[R/cache.R:16:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/cache.R#L16) *warning:* **no visible binding for global variable ‘cache_env’**
```r
  cache_env[[model$id]][[name]]
  ^~~~~~~~~
```
[R/feature_growth.R:44:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_growth.R#L44) *warning:* **no visible binding for global variable ‘growth_class’**
```r
  growth_class$new(rate, population, time)
  ^~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:28:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_ignore_singletons.R#L28) *warning:* **no visible binding for global variable ‘ign_singletons_class’**
```r
  ign_singletons_class$new()
  ^~~~~~~~~~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:40:29:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_ignore_singletons.R#L40) *warning:* **no visible global function definition for ‘get_snps’**
```r
    is_singleton <- colSums(get_snps(segsites)) == 1
                            ^~~~~~~~
```
[R/feature_ignore_singletons.R:41:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_ignore_singletons.R#L41) *style:* **Commas should never have a space before.**
```r
    segsites[ , !is_singleton]
             ~^
```
[R/feature_ignore_singletons.R:52:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_ignore_singletons.R#L52) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_msms_arg.ign_singletons <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:56:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_ignore_singletons.R#L56) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_scrm_arg.ign_singletons <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_ignore_singletons.R:60:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_ignore_singletons.R#L60) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_seqgen_arg.ign_singletons <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_migration.R:72:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_migration.R#L72) *warning:* **no visible binding for global variable ‘migration_class’**
```r
    return(migration_class$new(rate, time = time, symmetric = TRUE))
           ^~~~~~~~~~~~~~~
```
[R/feature_migration.R:74:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_migration.R#L74) *warning:* **no visible binding for global variable ‘migration_class’**
```r
    return(migration_class$new(rate, pop_from, pop_to, time))
           ^~~~~~~~~~~~~~~
```
[R/feature_mutation.R:178:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_mutation.R#L178) *warning:* **no visible global function definition for ‘conv_to_ms_arg.mutation’**
```r
  conv_to_ms_arg.mutation(feature, model)
  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_outgroup.R:31:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_outgroup.R#L31) *warning:* **no visible binding for global variable ‘outgroup_class’**
```r
  outgroup_class$new(population)
  ^~~~~~~~~~~~~~
```
[R/feature_outgroup.R:40:34:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_outgroup.R#L40) *warning:* **no visible binding for global variable ‘is_feat_outgroup’**
```r
  mask <- vapply(model$features, is_feat_outgroup, logical(1))
                                 ^~~~~~~~~~~~~~~~
```
[R/feature_outgroup.R:49:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_outgroup.R#L49) *warning:* **no visible global function definition for ‘get_outgroup’**
```r
  outgroup <- get_outgroup(model)
              ^~~~~~~~~~~~
```
[R/feature_outgroup.R:51:20:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_outgroup.R#L51) *warning:* **no visible global function definition for ‘get_sample_size’**
```r
  outgroup_size <- get_sample_size(model, for_sim)[outgroup]
                   ^~~~~~~~~~~~~~~
```
[R/feature_pop_merge.R:47:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_pop_merge.R#L47) *warning:* **no visible binding for global variable ‘pop_merge_class’**
```r
  pop_merge_class$new(time, pop_source, pop_target)
  ^~~~~~~~~~~~~~~
```
[R/feature_recombination.R:35:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_recombination.R#L35) *warning:* **no visible binding for global variable ‘recombination_class’**
```r
  recombination_class$new(rate)
  ^~~~~~~~~~~~~~~~~~~
```
[R/feature_recombination.R:54:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_recombination.R#L54) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_seqgen_arg.recombination <- ignore_par
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_sample.R:44:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L44) *warning:* **no visible binding for global variable ‘sample_class’**
```r
  sample_class$new(individuals, ploidy, time)
  ^~~~~~~~~~~~
```
[R/feature_sample.R:59:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L59) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.logical(for_sim))
  ^~~~~~~~~~~
```
[R/feature_sample.R:60:18:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L60) *warning:* **no visible global function definition for ‘read_cache’**
```r
  sample_size <- read_cache(model, paste0("sample_size_", for_sim))
                 ^~~~~~~~~~
```
[R/feature_sample.R:63:40:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L63) *warning:* **no visible binding for global variable ‘is_feat_sample’**
```r
    feat_mask <- sapply(model$feature, is_feat_sample)
                                       ^~~~~~~~~~~~~~
```
[R/feature_sample.R:68:36:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L68) *warning:* **no visible global function definition for ‘get_ploidy’**
```r
      sample_size <- sample_size * get_ploidy(model)
                                   ^~~~~~~~~~
```
[R/feature_sample.R:70:36:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L70) *warning:* **no visible global function definition for ‘get_samples_per_ind’**
```r
      sample_size <- sample_size * get_samples_per_ind(model)
                                   ^~~~~~~~~~~~~~~~~~~
```
[R/feature_sample.R:72:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L72) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, paste0("sample_size_", for_sim), sample_size)
    ^~~~~
```
[R/feature_sample.R:80:34:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L80) *warning:* **no visible binding for global variable ‘is_feat_sample’**
```r
  mask <- vapply(model$features, is_feat_sample, logical(1))
                                 ^~~~~~~~~~~~~~
```
[R/feature_sample.R:91:18:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sample.R#L91) *warning:* **no visible global function definition for ‘get_sample_size’**
```r
  sample_size <- get_sample_size(model, TRUE)
                 ^~~~~~~~~~~~~~~
```
[R/feature_selection.R:176:21:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_selection.R#L176) *warning:* **no visible global function definition for ‘get_populations’**
```r
    n_pop <- length(get_populations(model))
                    ^~~~~~~~~~~~~~~
```
[R/feature_selection.R:191:36:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_selection.R#L191) *style:* **Commas should never have a space before.**
```r
                        n_pop, " " , paste(start_freq, collapse = " "), " ",
                                  ~^
```
[R/feature_size_change.R:47:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_size_change.R#L47) *warning:* **no visible binding for global variable ‘size_change_class’**
```r
  size_change_class$new(new_size, population, time)
  ^~~~~~~~~~~~~~~~~
```
[R/feature_sumstats.R:18:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sumstats.R#L18) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_msms_arg.seg_sites_feat <- conv_to_ms_arg.seg_sites_feat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_sumstats.R:22:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sumstats.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_scrm_arg.seg_sites_feat <- conv_to_ms_arg.seg_sites_feat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_sumstats.R:26:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_sumstats.R#L26) *style:* **Variable and function names should not be longer than 30 characters.**
```r
conv_to_seqgen_arg.seg_sites_feat <- conv_to_ms_arg.seg_sites_feat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/feature_unphased.R:52:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_unphased.R#L52) *warning:* **no visible binding for global variable ‘unphased_class’**
```r
  unphased_class$new(samples_per_ind)
  ^~~~~~~~~~~~~~
```
[R/feature_unphased.R:60:34:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_unphased.R#L60) *warning:* **no visible binding for global variable ‘is_feat_unphased’**
```r
  mask <- vapply(model$features, is_feat_unphased, logical(1))
                                 ^~~~~~~~~~~~~~~~
```
[R/feature_unphased.R:68:11:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_unphased.R#L68) *warning:* **no visible global function definition for ‘get_feature_unphased’**
```r
  feat <- get_feature_unphased(model)
          ^~~~~~~~~~~~~~~~~~~~
```
[R/feature_unphased.R:69:29:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/feature_unphased.R#L69) *warning:* **no visible global function definition for ‘get_ploidy’**
```r
  if (is.null(feat)) return(get_ploidy(model))
                            ^~~~~~~~~~
```
[R/import_popgenome.R:19:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/import_popgenome.R#L19) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.segsites.GENOME <- function(data, only_synonymous = FALSE, ...) {
^~~~~~~~~~~~~~~~~~
```
[R/import_popgenome.R:20:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/import_popgenome.R#L20) *warning:* **no visible global function definition for ‘require_package’**
```r
  require_package("PopGenome")
  ^~~~~~~~~~~~~~~
```
[R/import_popgenome.R:43:43:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/import_popgenome.R#L43) *style:* **Commas should never have a space before.**
```r
      seg_sites <- bam[c(pops, outgroup), , drop = FALSE]
                                         ~^
```
[R/import_popgenome.R:49:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/import_popgenome.R#L49) *warning:* **no visible global function definition for ‘create_segsites’**
```r
    create_segsites(seg_sites, pos)
    ^~~~~~~~~~~~~~~
```
[R/import_popgenome.R:56:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/import_popgenome.R#L56) *warning:* **no visible global function definition for ‘require_package’**
```r
  require_package("PopGenome")
  ^~~~~~~~~~~~~~~
```
[R/interface_abc.R:80:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/interface_abc.R#L80) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  sumstats <- get_summary_statistics(model)
              ^~~~~~~~~~~~~~~~~~~~~~
```
[R/interface_abc.R:84:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/interface_abc.R#L84) *warning:* **no visible global function definition for ‘assert_that’**
```r
      assert_that(is.numeric(value))
      ^~~~~~~~~~~
```
[R/interface_abc.R:86:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/interface_abc.R#L86) *style:* **lines should not be more than 80 characters.**
```r
        warning("Value of the ", stat$get_name(), " statistic is not a vector. ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/locus.R:84:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/locus.R#L84) *warning:* **no visible binding for global variable ‘locus_class’**
```r
  locus_class$new(length, 1)
  ^~~~~~~~~~~
```
[R/locus.R:92:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/locus.R#L92) *warning:* **no visible binding for global variable ‘locus_class’**
```r
  locus_class$new(round(length), number)
  ^~~~~~~~~~~
```
[R/locus.R:151:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/locus.R#L151) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  llm <- get_locus_length_matrix(model)
         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/locus.R:152:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/locus.R#L152) *warning:* **no visible global function definition for ‘get_locus_group’**
```r
  group <- get_locus_group(model, locus)
           ^~~~~~~~~~~~~~~
```
[R/model_build.R:10:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L10) *warning:* **no visible global function definition for ‘is.model’**
```r
  if (is.model(e1)) return(add_to_model(e2, e1, e2name))
      ^~~~~~~~
```
[R/model_build.R:10:28:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L10) *warning:* **no visible global function definition for ‘add_to_model’**
```r
  if (is.model(e1)) return(add_to_model(e2, e1, e2name))
                           ^~~~~~~~~~~~
```
[R/model_build.R:48:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L48) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_build.R:54:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L54) *warning:* **no visible global function definition for ‘add_variation’**
```r
  model <- add_variation(model)
           ^~~~~~~~~~~~~
```
[R/model_build.R:56:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L56) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_build.R:79:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L79) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_build.R:86:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_build.R#L86) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_check.R:18:16:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_check.R#L18) *warning:* **no visible global function definition for ‘get_simulator’**
```r
    simprog <- get_simulator(simprog_name)
               ^~~~~~~~~~~~~
```
[R/model_getters.R:15:13:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L15) *warning:* **no visible global function definition for ‘is.model’**
```r
  stopifnot(is.model(model))
            ^~~~~~~~
```
[R/model_getters.R:17:16:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L17) *warning:* **no visible global function definition for ‘read_cache’**
```r
  par_table <- read_cache(model, "par_table")
               ^~~~~~~~~~
```
[R/model_getters.R:35:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L35) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "par_table", par_table)
    ^~~~~
```
[R/model_getters.R:45:13:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L45) *warning:* **no visible global function definition for ‘is.model’**
```r
  stopifnot(is.model(model))
            ^~~~~~~~
```
[R/model_getters.R:59:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L59) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  llm <- get_locus_length_matrix(model)
         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:71:14:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L71) *warning:* **no visible global function definition for ‘get_locus_group’**
```r
    group <- get_locus_group(model, locus)
             ^~~~~~~~~~~~~~~
```
[R/model_getters.R:75:21:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L75) *style:* **Commas should never have a space before.**
```r
  if (sum(llm[group , c(1:2, 4:5)]) == 0) return(llm[group , 3])
                   ~^
```
[R/model_getters.R:75:60:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L75) *style:* **Commas should never have a space before.**
```r
  if (sum(llm[group , c(1:2, 4:5)]) == 0) return(llm[group , 3])
                                                          ~^
```
[R/model_getters.R:81:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L81) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  llm <- get_locus_length_matrix(model)
         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:82:25:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L82) *style:* **Commas should never have a space before.**
```r
  min(which(cumsum(llm[ , "number"]) >= locus))
                       ~^
```
[R/model_getters.R:87:8:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L87) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  nrow(get_locus_length_matrix(model))
       ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:94:49:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L94) *warning:* **no visible binding for global variable ‘is_feat_sample’**
```r
  feat <- model$features[vapply(model$features, is_feat_sample, logical(1))]
                                                ^~~~~~~~~~~~~~
```
[R/model_getters.R:96:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L96) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(pop_number > 0)
  ^~~~~~~~~~~
```
[R/model_getters.R:105:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L105) *warning:* **no visible global function definition for ‘read_cache’**
```r
  llm <- read_cache(model, "llm")
         ^~~~~~~~~~
```
[R/model_getters.R:107:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L107) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(length(model$loci) >= 0)
    ^~~~~~~~~~~
```
[R/model_getters.R:115:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L115) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "llm", llm)
    ^~~~~
```
[R/model_getters.R:125:14:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L125) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  numbers <- get_locus_length_matrix(model)[ , "number"]
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model_getters.R:125:46:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L125) *style:* **Commas should never have a space before.**
```r
  numbers <- get_locus_length_matrix(model)[ , "number"]
                                            ~^
```
[R/model_getters.R:127:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L127) *warning:* **no visible global function definition for ‘has_variation’**
```r
  if (has_variation(model) && !ignore_variation) return(1)
      ^~~~~~~~~~~~~
```
[R/model_getters.R:144:18:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L144) *warning:* **no visible global function definition for ‘get_sample_size’**
```r
  sample_size <- get_sample_size(model)
                 ^~~~~~~~~~~~~~~
```
[R/model_getters.R:145:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L145) *warning:* **no visible global function definition for ‘get_outgroup’**
```r
  outgroup <- get_outgroup(model)
              ^~~~~~~~~~~~
```
[R/model_getters.R:152:47:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L152) *warning:* **no visible global function definition for ‘get_ploidy’**
```r
  if (!haploids) sample_size <- sample_size / get_ploidy(model)
                                              ^~~~~~~~~~
```
[R/model_getters.R:155:17:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L155) *warning:* **no visible global function definition for ‘get_populations’**
```r
  if (!pop %in% get_populations(model)) stop("Invalid population")
                ^~~~~~~~~~~~~~~
```
[R/model_getters.R:163:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L163) *warning:* **no visible global function definition for ‘get_parameter’**
```r
  param <- get_parameter(model)
           ^~~~~~~~~~~~~
```
[R/model_getters.R:166:35:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L166) *warning:* **no visible binding for global variable ‘is.prior_par’**
```r
    param <- param[!vapply(param, is.prior_par, numeric(1))]
                                  ^~~~~~~~~~~~
```
[R/model_getters.R:174:28:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_getters.R#L174) *warning:* **no visible global function definition for ‘select_simprog’**
```r
  suppressWarnings(prog <- select_simprog(model))
                           ^~~~~~~~~~~~~~
```
[R/model_print.R:17:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_print.R#L17) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "features", "Features")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:20:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_print.R#L20) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "parameter", "Parameter")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:23:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_print.R#L23) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "loci", "Loci")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:26:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_print.R#L26) *warning:* **no visible global function definition for ‘print_model_part’**
```r
  print_model_part(x, "sum_stats", "Summary Statistics")
  ^~~~~~~~~~~~~~~~
```
[R/model_print.R:29:31:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_print.R#L29) *warning:* **no visible global function definition for ‘select_simprog’**
```r
  suppressWarnings(simprog <- select_simprog(x))
                              ^~~~~~~~~~~~~~
```
[R/model_print.R:35:23:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_print.R#L35) *warning:* **no visible global function definition for ‘get_cmd’**
```r
    cmd <- try(cmd <- get_cmd(x), silent = TRUE)
                      ^~~~~~~
```
[R/model.R:72:20:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L72) *warning:* **no visible global function definition for ‘feat_sample’**
```r
  model <- model + feat_sample(sample_size, ploidy)
                   ^~~~~~~~~~~
```
[R/model.R:76:22:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L76) *warning:* **no visible global function definition for ‘locus_averaged’**
```r
    model <- model + locus_averaged(loci_number, loci_length)
                     ^~~~~~~~~~~~~~
```
[R/model.R:92:11:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L92) *warning:* **no visible global function definition for ‘read_cache’**
```r
  name <- read_cache(model, "simprog")
          ^~~~~~~~~~
```
[R/model.R:98:18:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L98) *warning:* **no visible global function definition for ‘get_simulator’**
```r
      simprog <- get_simulator(simprog_name)
                 ^~~~~~~~~~~~~
```
[R/model.R:109:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L109) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "simprog", name)
    ^~~~~
```
[R/model.R:126:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L126) *warning:* **no visible global function definition for ‘get_locus_length_matrix’**
```r
  sum(get_locus_length_matrix(model)[ , c(1:2, 4:5)]) > 0
      ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/model.R:126:39:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L126) *style:* **Commas should never have a space before.**
```r
  sum(get_locus_length_matrix(model)[ , c(1:2, 4:5)]) > 0
                                     ~^
```
[R/model.R:132:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L132) *warning:* **no visible global function definition for ‘get_positions’**
```r
    pos <- get_positions(seg_sites[[locus]])
           ^~~~~~~~~~~~~
```
[R/model.R:133:21:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L133) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
    locus_length <- get_locus_length(model, locus, total = FALSE)
                    ^~~~~~~~~~~~~~~~
```
[R/model.R:142:19:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model.R#L142) *warning:* **no visible global function definition for ‘get_trio_locus’**
```r
    trio_locus <- get_trio_locus(seg_sites[[locus]])
                  ^~~~~~~~~~~~~~
```
[R/model_scale.R:23:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_scale.R#L23) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/model_scale.R:23:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_scale.R#L23) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/model_scale.R:24:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_scale.R#L24) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.numeric(scaling_factor))
  ^~~~~~~~~~~
```
[R/model_scale.R:25:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_scale.R#L25) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(length(scaling_factor) == 1)
  ^~~~~~~~~~~
```
[R/model_scale.R:27:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_scale.R#L27) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/model_simulate.R:40:14:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_simulate.R#L40) *warning:* **no visible global function definition for ‘select_simprog’**
```r
  simprog <- select_simprog(object)
             ^~~~~~~~~~~~~~
```
[R/model_simulate.R:44:21:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/model_simulate.R#L44) *warning:* **no visible global function definition for ‘prepare_pars’**
```r
    current_pars <- prepare_pars(pars, object)
                    ^~~~~~~~~~~~
```
[R/onLoad.R:3:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/onLoad.R#L3) *warning:* **no visible global function definition for ‘activate_scrm’**
```r
  activate_scrm()
  ^~~~~~~~~~~~~
```
[R/parameter_prior.R:30:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter_prior.R#L30) *warning:* **no visible binding for global variable ‘prior_par_class’**
```r
  prior_par_class$new(name, as.expression(substitute(prior)))
  ^~~~~~~~~~~~~~~
```
[R/parameter_prior.R:38:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter_prior.R#L38) *warning:* **no visible global function definition for ‘get_parameter’**
```r
  par <- get_parameter(model)
         ^~~~~~~~~~~~~
```
[R/parameter_prior.R:39:32:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter_prior.R#L39) *warning:* **no visible binding for global variable ‘is.prior_par’**
```r
  prior_par <- par[vapply(par, is.prior_par, logical(1))]
                               ^~~~~~~~~~~~
```
[R/parameter.R:123:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L123) *warning:* **no visible binding for global variable ‘parameter_class’**
```r
  parameter_class$new(as.expression(substitute(expr)))
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:135:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L135) *warning:* **no visible binding for global variable ‘parameter_class’**
```r
  parameter_class$new(as.expression(constant))
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:144:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L144) *warning:* **no visible binding for global variable ‘named_par_class’**
```r
  named_par_class$new(name)
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:166:11:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L166) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if ((!is.numeric(value)) || length(value) != 1) {
          ^
```
[R/parameter.R:192:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L192) *warning:* **no visible binding for global variable ‘range_par_class’**
```r
  range_par_class$new(lower, upper, name)
  ^~~~~~~~~~~~~~~
```
[R/parameter.R:203:25:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L203) *warning:* **no visible binding for global variable ‘par_eval_func’**
```r
    par_env[["par"]] <- par_eval_func
                        ^~~~~~~~~~~~~
```
[R/parameter.R:209:25:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L209) *warning:* **no visible binding for global variable ‘par_print_func’**
```r
    par_env[["par"]] <- par_print_func
                        ^~~~~~~~~~~~~~
```
[R/parameter.R:225:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L225) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.numeric(pars))
  ^~~~~~~~~~~
```
[R/parameter.R:229:18:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L229) *warning:* **no visible global function definition for ‘get_par_names’**
```r
    par_names <- get_par_names(model, without_priors = TRUE)
                 ^~~~~~~~~~~~~
```
[R/parameter.R:237:11:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter.R#L237) *warning:* **no visible global function definition for ‘sample_par_priors’**
```r
  c(pars, sample_par_priors(model))
          ^~~~~~~~~~~~~~~~~
```
[R/parameter_variation.R:59:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/parameter_variation.R#L59) *warning:* **no visible binding for global variable ‘variation_par_class’**
```r
  variation_par_class$new(par, variance)
  ^~~~~~~~~~~~~~~~~~~
```
[R/segsites.R:47:11:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L47) *warning:* **no visible global function definition for ‘get_snps’**
```r
  snps <- get_snps(x)
          ^~~~~~~~
```
[R/segsites.R:48:28:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L48) *warning:* **no visible global function definition for ‘get_positions’**
```r
  colnames(snps) <- format(get_positions(x), scientific = FALSE)
                           ^~~~~~~~~~~~~
```
[R/segsites.R:62:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L62) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.matrix.segsites <- function(x, ...) get_snps(x)
^~~~~~~~~~~~~~~~~~
```
[R/segsites.R:75:19:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L75) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  create_segsites((matrix(c(1, 1, 0, 1, 1,
                  ^
```
[R/segsites.R:83:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L83) *warning:* **no visible global function definition for ‘create_segsites’**
```r
  create_segsites(matrix(0, n_ind, 0), numeric(0))
  ^~~~~~~~~~~~~~~
```
[R/segsites.R:103:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L103) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.list(left) && is.list(middle) && is.list(right))
  ^~~~~~~~~~~
```
[R/segsites.R:104:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L104) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(length(left) == length(middle))
  ^~~~~~~~~~~
```
[R/segsites.R:105:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L105) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(length(left) == length(right))
  ^~~~~~~~~~~
```
[R/segsites.R:142:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L142) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.segsites.default <- function(data, ...) {
^~~~~~~~~~~~~~~~~~~
```
[R/segsites.R:147:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L147) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
as.segsites.list <- function(data, ...) {
^~~~~~~~~~~~~~~~
```
[R/segsites.R:148:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L148) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(all(vapply(data, is_segsites, logical(1))))
  ^~~~~~~~~~~
```
[R/segsites.R:148:32:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/segsites.R#L148) *warning:* **no visible binding for global variable ‘is_segsites’**
```r
  assert_that(all(vapply(data, is_segsites, logical(1))))
                               ^~~~~~~~~~~
```
[R/simulator_class.R:28:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L28) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is_simulator(simulator))
  ^~~~~~~~~~~
```
[R/simulator_class.R:28:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L28) *warning:* **no visible global function definition for ‘is_simulator’**
```r
  assert_that(is_simulator(simulator))
              ^~~~~~~~~~~~
```
[R/simulator_class.R:33:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L33) *warning:* **no visible binding for global variable ‘simulators’**
```r
  simulators[[name]]
  ^~~~~~~~~~
```
[R/simulator_class.R:40:19:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L40) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
  locus_length <- get_locus_length(model, group = locus_group)
                  ^~~~~~~~~~~~~~~~
```
[R/simulator_class.R:41:25:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L41) *warning:* **no visible global function definition for ‘get_locus_number’**
```r
  total_locus_number <- get_locus_number(model, locus_group, TRUE)
                        ^~~~~~~~~~~~~~~~
```
[R/simulator_class.R:64:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L64) *warning:* **no visible global function definition for ‘reduce_sim_commands’**
```r
  reduce_sim_commands(sim_cmds)
  ^~~~~~~~~~~~~~~~~~~
```
[R/simulator_class.R:70:44:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L70) *style:* **Commas should never have a space before.**
```r
  grouped_commands <- unique(sim_commands[ , 2])
                                          ~^
```
[R/simulator_class.R:73:36:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L73) *style:* **Commas should never have a space before.**
```r
    sum(sim_commands[sim_commands[ , 2] == cmd, 1])
                                  ~^
```
[R/simulator_class.R:90:13:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_class.R#L90) *warning:* **no visible global function definition for ‘get_simulator’**
```r
    info <- get_simulator(simulator)$get_info()
            ^~~~~~~~~~~~~
```
[R/simulator_msms.R:109:41:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_msms.R#L109) *style:* **Commas should never have a space before.**
```r
        paste("msms", sample_size, cmd[ , 1], cmd[ , 2])
                                       ~^
```
[R/simulator_msms.R:109:52:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_msms.R#L109) *style:* **Commas should never have a space before.**
```r
        paste("msms", sample_size, cmd[ , 1], cmd[ , 2])
                                                  ~^
```
[R/simulator_msms.R:158:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_msms.R#L158) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/simulator_ms.R:67:37:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_ms.R#L67) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        paste("ms", sample_size, cmd[ , 1], cmd[ , 2])
                                    ^
```
[R/simulator_ms.R:87:39:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_ms.R#L87) *style:* **Commas should never have a space before.**
```r
        paste("ms", sample_size, cmd[ , 1], cmd[ , 2])
                                     ~^
```
[R/simulator_ms.R:87:50:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_ms.R#L87) *style:* **Commas should never have a space before.**
```r
        paste("ms", sample_size, cmd[ , 1], cmd[ , 2])
                                                ~^
```
[R/simulator_ms.R:136:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_ms.R#L136) *warning:* **no visible global function definition for ‘register_simulator’**
```r
  register_simulator(ms_class$new(priority))
  ^~~~~~~~~~~~~~~~~~
```
[R/simulator_ms.R:136:22:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_ms.R#L136) *warning:* **no visible binding for global variable ‘ms_class’**
```r
  register_simulator(ms_class$new(priority))
                     ^~~~~~~~
```
[R/simulator_ms.R:137:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_ms.R#L137) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/simulator_scrm.R:11:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L11) *warning:* **no visible global function definition for ‘read_cache’**
```r
  cmd <- read_cache(model, "scrm_cmd")
         ^~~~~~~~~~
```
[R/simulator_scrm.R:17:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L17) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "scrm_cmd", cmd)
    ^~~~~
```
[R/simulator_scrm.R:83:41:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L83) *style:* **Commas should never have a space before.**
```r
        paste("scrm", sample_size, cmd[ , 1], cmd[ , 2])
                                       ~^
```
[R/simulator_scrm.R:83:52:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L83) *style:* **Commas should never have a space before.**
```r
        paste("scrm", sample_size, cmd[ , 1], cmd[ , 2])
                                                  ~^
```
[R/simulator_scrm.R:129:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L129) *warning:* **no visible global function definition for ‘register_simulator’**
```r
  register_simulator(scrm_class$new(priority))
  ^~~~~~~~~~~~~~~~~~
```
[R/simulator_scrm.R:129:22:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L129) *warning:* **no visible binding for global variable ‘scrm_class’**
```r
  register_simulator(scrm_class$new(priority))
                     ^~~~~~~~~~
```
[R/simulator_scrm.R:130:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_scrm.R#L130) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/simulator_seqgen.R:5:17:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L5) *warning:* **no visible global function definition for ‘read_cache’**
```r
  tree_model <- read_cache(model, "tree_model")
                ^~~~~~~~~~
```
[R/simulator_seqgen.R:20:29:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L20) *warning:* **no visible global function definition for ‘create_sumstat_container’**
```r
    tree_model$sum_stats <- create_sumstat_container()
                            ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:21:32:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L21) *warning:* **no visible global function definition for ‘sumstat_sg_trees’**
```r
    tree_model <- tree_model + sumstat_sg_trees()
                               ^~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:23:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L23) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "tree_model", tree_model)
    ^~~~~
```
[R/simulator_seqgen.R:41:20:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L41) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
  locus_lengths <- get_locus_length(model, group = locus, total = FALSE)
                   ^~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:47:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L47) *warning:* **no visible global function definition for ‘sg_generate_opt_cmd’**
```r
  cmd <- sg_generate_opt_cmd(model)
         ^~~~~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:61:10:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L61) *warning:* **no visible global function definition for ‘read_cache’**
```r
  cmd <- read_cache(model, "seqgen_cmd")
         ^~~~~~~~~~
```
[R/simulator_seqgen.R:74:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L74) *warning:* **no visible global function definition for ‘cache’, Did you mean 'cycle'?**
```r
    cache(model, "seqgen_cmd", cmd)
    ^~~~~
```
[R/simulator_seqgen.R:222:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L222) *warning:* **no visible global function definition for ‘register_simulator’**
```r
  register_simulator(seqgen_class$new(binary, priority))
  ^~~~~~~~~~~~~~~~~~
```
[R/simulator_seqgen.R:222:22:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L222) *warning:* **no visible binding for global variable ‘seqgen_class’**
```r
  register_simulator(seqgen_class$new(binary, priority))
                     ^~~~~~~~~~~~
```
[R/simulator_seqgen.R:223:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/simulator_seqgen.R#L223) *warning:* **no visible global function definition for ‘reset_cache’**
```r
  reset_cache()
  ^~~~~~~~~~~
```
[R/sumstat_dna.R:40:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_dna.R#L40) *warning:* **no visible binding for global variable ‘stat_dna_class’**
```r
  stat_dna_class$new(name, transformation)
  ^~~~~~~~~~~~~~
```
[R/sumstat_file.R:46:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_file.R#L46) *warning:* **no visible binding for global variable ‘stat_file_class’**
```r
  stat_file_class$new(folder)
  ^~~~~~~~~~~~~~~
```
[R/sumstat_four_gamete.R:73:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_four_gamete.R#L73) *warning:* **no visible binding for global variable ‘stat_four_gamete_class’**
```r
  stat_four_gamete_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat_ihh.R:53:45:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_ihh.R#L53) *style:* **Commas should never have a space before.**
```r
                      iHS = data.frame(ihh[ , 1:2], iHS = rep(NA, n_snps))))
                                           ~^
```
[R/sumstat_ihh.R:61:55:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_ihh.R#L61) *style:* **Commas should never have a space before.**
```r
            data.frame(ihh2ihs(ihh, freqbin)$res.ihs[ , -4])
                                                     ~^
```
[R/sumstat_ihh.R:148:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_ihh.R#L148) *warning:* **no visible binding for global variable ‘stat_ihh_class’**
```r
  stat_ihh_class$new(name, population, max_snps, calc_ihs, transformation)
  ^~~~~~~~~~~~~~
```
[R/sumstat_jsfs.R:60:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_jsfs.R#L60) *warning:* **no visible binding for global variable ‘stat_jsfs_class’**
```r
  stat_jsfs_class$new(name, populations, per_locus, transformation)
  ^~~~~~~~~~~~~~~
```
[R/sumstat_mcmf.R:44:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_mcmf.R#L44) *warning:* **no visible binding for global variable ‘stat_mcmf_class’**
```r
  stat_mcmf_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~~
```
[R/sumstat_nucleotide_div.R:46:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_nucleotide_div.R#L46) *warning:* **no visible binding for global variable ‘stat_pi_class’**
```r
  stat_pi_class$new(name, population, transformation)
  ^~~~~~~~~~~~~
```
[R/sumstat_omega.R:156:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_omega.R#L156) *warning:* **no visible binding for global variable ‘stat_omega_class’**
```r
  stat_omega_class$new(name, min_win, max_win, grid, binary, transformation)
  ^~~~~~~~~~~~~~~~
```
[R/sumstat_omega.R:160:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_omega.R#L160) *warning:* **no visible global function definition for ‘search_executable’**
```r
  !is.null(search_executable("OmegaPlus", envir_var = "OMEGAPLUS"))
           ^~~~~~~~~~~~~~~~~
```
[R/sumstat.R:71:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L71) *warning:* **no visible global function definition for ‘get_id’, Did you mean 'getwd'?**
```r
  model$id <- get_id()
              ^~~~~~
```
[R/sumstat.R:87:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L87) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/sumstat.R:87:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L87) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/sumstat.R:89:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L89) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(!is.null(segsites_list))
    ^~~~~~~~~~~
```
[R/sumstat.R:90:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L90) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(all(vapply(segsites_list, is_segsites, logical(1))))
    ^~~~~~~~~~~
```
[R/sumstat.R:90:43:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L90) *warning:* **no visible binding for global variable ‘is_segsites’**
```r
    assert_that(all(vapply(segsites_list, is_segsites, logical(1))))
                                          ^~~~~~~~~~~
```
[R/sumstat.R:93:24:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L93) *warning:* **no visible global function definition for ‘remove_singletons’**
```r
      segsites_list <- remove_singletons(segsites_list)
                       ^~~~~~~~~~~~~~~~~
```
[R/sumstat.R:96:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L96) *warning:* **no visible global function definition for ‘requires_trees’**
```r
  if (requires_trees(model)) assert_that(!is.null(trees))
      ^~~~~~~~~~~~~~
```
[R/sumstat.R:96:30:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L96) *warning:* **no visible global function definition for ‘assert_that’**
```r
  if (requires_trees(model)) assert_that(!is.null(trees))
                             ^~~~~~~~~~~
```
[R/sumstat.R:97:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L97) *warning:* **no visible global function definition for ‘requires_files’**
```r
  if (requires_files(model)) assert_that(!is.null(files))
      ^~~~~~~~~~~~~~
```
[R/sumstat.R:97:30:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L97) *warning:* **no visible global function definition for ‘assert_that’**
```r
  if (requires_files(model)) assert_that(!is.null(files))
                             ^~~~~~~~~~~
```
[R/sumstat.R:111:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L111) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/sumstat.R:111:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L111) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/sumstat.R:120:20:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L120) *warning:* **no visible global function definition for ‘conv_for_trios’**
```r
      seg_sites <- conv_for_trios(seg_sites, model)
                   ^~~~~~~~~~~~~~
```
[R/sumstat.R:176:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L176) *warning:* **no visible global function definition for ‘assert_that’**
```r
  assert_that(is.model(model))
  ^~~~~~~~~~~
```
[R/sumstat.R:176:15:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L176) *warning:* **no visible global function definition for ‘is.model’**
```r
  assert_that(is.model(model))
              ^~~~~~~~
```
[R/sumstat.R:179:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L179) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(is.list(trios))
    ^~~~~~~~~~~
```
[R/sumstat.R:180:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L180) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(!is.null(segsites_list))
    ^~~~~~~~~~~
```
[R/sumstat.R:186:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L186) *warning:* **no visible global function definition for ‘assert_that’**
```r
      assert_that(is.numeric(trio))
      ^~~~~~~~~~~
```
[R/sumstat.R:188:7:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L188) *warning:* **no visible global function definition for ‘assert_that’**
```r
      assert_that(length(trio) == 3)
      ^~~~~~~~~~~
```
[R/sumstat.R:196:22:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L196) *warning:* **no visible global function definition for ‘as.segsites’**
```r
    segsites_list <- as.segsites(segsites_list, ...)
                     ^~~~~~~~~~~
```
[R/sumstat.R:200:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L200) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(length(segsites_list) == get_locus_number(model))
    ^~~~~~~~~~~
```
[R/sumstat.R:200:42:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L200) *warning:* **no visible global function definition for ‘get_locus_number’**
```r
    assert_that(length(segsites_list) == get_locus_number(model))
                                         ^~~~~~~~~~~~~~~~
```
[R/sumstat.R:209:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L209) *warning:* **no visible global function definition for ‘calc_sumstats’**
```r
  calc_sumstats(model, segsites_list, tree_list)
  ^~~~~~~~~~~~~
```
[R/sumstat.R:214:14:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L214) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  any(sapply(get_summary_statistics(model), function(x) x$requires_segsites()))
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat.R:219:14:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L219) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  any(sapply(get_summary_statistics(model), function(x) x$requires_trees()))
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat.R:224:14:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat.R#L224) *warning:* **no visible global function definition for ‘get_summary_statistics’**
```r
  any(sapply(get_summary_statistics(model), function(x) x$requires_files()))
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:30:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_seg_sites.R#L30) *warning:* **no visible binding for global variable ‘stat_segsites_class’**
```r
  stat_segsites_class$new(name, transformation)
  ^~~~~~~~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:36:21:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_seg_sites.R#L36) *warning:* **no visible global function definition for ‘get_locus_length’**
```r
    locus_length <- get_locus_length(model, i, total = FALSE)
                    ^~~~~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:42:12:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_seg_sites.R#L42) *warning:* **no visible global function definition for ‘get_positions’**
```r
    pos <- get_positions(seg_sites[[i]])
           ^~~~~~~~~~~~~
```
[R/sumstat_seg_sites.R:51:38:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_seg_sites.R#L51) *style:* **Commas should never have a space before.**
```r
    trio_segsites <- seg_sites[[i]][ , left | middle | right]
                                    ~^
```
[R/sumstat_seg_sites.R:60:5:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_seg_sites.R#L60) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(nrow(seg_sites[[i]]) > 0)
    ^~~~~~~~~~~
```
[R/sumstat_sfs.R:38:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_sfs.R#L38) *warning:* **no visible binding for global variable ‘stat_sfs_class’**
```r
  stat_sfs_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~
```
[R/sumstat_tajimas_d.R:62:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_tajimas_d.R#L62) *warning:* **no visible binding for global variable ‘stat_tajimas_d_class’**
```r
  stat_tajimas_d_class$new(name, population, transformation)
  ^~~~~~~~~~~~~~~~~~~~
```
[R/sumstat_trees.R:28:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_trees.R#L28) *warning:* **no visible binding for global variable ‘stat_trees_class’**
```r
  stat_trees_class$new(name, identity)
  ^~~~~~~~~~~~~~~~
```
[R/sumstat_trees.R:57:3:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/R/sumstat_trees.R#L57) *warning:* **no visible binding for global variable ‘stat_sg_trees_class’**
```r
  stat_sg_trees_class$new("trees", identity)
  ^~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-feature-ign-singletons.R:13:45:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-feature-ign-singletons.R#L13) *style:* **Commas should never have a space before.**
```r
               list(create_test_segsites()[ , -c(1, 3)],
                                           ~^
```
[tests/testthat/test-feature-ign-singletons.R:14:45:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-feature-ign-singletons.R#L14) *style:* **Commas should never have a space before.**
```r
                    create_test_segsites()[ , -c(1, 3)]))
                                           ~^
```
[tests/testthat/test-model-cache.R:47:1:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-model-cache.R#L47) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-model-class.R:241:44:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-model-class.R#L241) *style:* **Commas should always have a space after.**
```r
               data.frame(name = c("theta","tau"),
                                           ^
```
[tests/testthat/test-segsites-class.R:30:31:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-segsites-class.R#L30) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  segsites <- create_segsites((matrix(c(1, 1, 0, 1, 1,
                              ^
```
[tests/testthat/test-segsites-class.R:36:26:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-segsites-class.R#L36) *style:* **Commas should never have a space before.**
```r
  ss_subset <- segsites[ , 1:2]
                        ~^
```
[tests/testthat/test-segsites-class.R:38:64:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-segsites-class.R#L38) *style:* **Commas should never have a space before.**
```r
  expect_equivalent(as.matrix(ss_subset), as.matrix(segsites)[ , 1:2])
                                                              ~^
```
[tests/testthat/test-segsites-class.R:41:30:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-segsites-class.R#L41) *style:* **Commas should never have a space before.**
```r
  expect_equal(dim(segsites[ , 1]), c(3, 1))
                            ~^
```
[tests/testthat/test-segsites-class.R:42:33:](https://github.com/statgenlmu/coala/blob/16cd9b6f02bfdefe8fa2b305a77074b16064cb93/tests/testthat/test-segsites-class.R#L42) *style:* **Commas should never have a space before.**
```r
  expect_equal(dim(segsites[1:2 , ]), c(2, 3))
                               ~^
```


Finally had another rollover, and this print failed again. :/

    print('Warning: last line of data incomplete?! '+data[-1].encode('utf-8'))
TypeError: Can't convert 'bytes' object to str implicitly

Bit confused about that, since I assumed all it would need was that encode to utf-8. Guess not...

Trying this now:
    print('Warning: last line of data incomplete?! ',data[-1].encode('utf-8'))

Tested printing that kind of thing during the "for line in data" loop, and it does just seem to show the byte array (i.e. "line.encode('utf-8')" without error. That's good enough just for rollover info for now.

Will let you know when I see an actual successful rollover!


@gertvr Lost dit het probleem op?


i can do that, indeed


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 15036](https://teamcity.mesosphere.io/viewLog.html?buildId=129641&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 225 Build time: 00:03:44


スマートによく書けていると思います！

プラス以下の点も改善してみましょう。
- エラー表示もhtmlのbodyの中に表示されるようにしましょう
- 「計算」ボタンを押下した時に、以前の入力が残っているように改善してみましょう


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 15035](https://teamcity.mesosphere.io/viewLog.html?buildId=129640&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 225 Build time: 00:04:25


@lots0logs : A user was complaining about this. I haven't checked it at all... sorry if it's a mistake to change this.


Thanks. I just brought in your 2 additional fix commits into the codebase.
-brady


Почему не записать это в файл `web/game.html`? Тогда не пришлось-бы исправлять `Pages.cpp`.


Ah, ok. I understand.


Oh.. Good idea, I didn't think about other logging types


I've added a comment to make this clear


`note taht` is not really an improvement ;-)


Makes sense to point to the stable version, `http://tarballs.openstack.org/nova/nova-stable-liberty.tar.gz`? Or is only tested for 12.0.0?


Test


added test


I don't know if your on IRC, but in case:
[03:28] <Elv13_> psychon: Here is the new version of the code you just commented on https://github.com/Elv13/awesome-1/blob/upstream_dynamic_complete/lib/awful/layout/dynamic/base.lua (still using the big surface), but most of your other concerns are addressed. Can you check it out before I update the other PR?
[03:30] <Elv13_> It remove most of the internal state handling you were concened about and do a state "diff" everytime awful.layout.init tell it something changed rather than track individual properties. It also handle multi-tag selection and tiled clients properly.
[03:30] <Elv13_> Other than that, the resize code is now much, much complete and mostly bug free. It even work better than the current stateless one in the vast majority of cases
[03:31] <Elv13_> (like being able to resize any layouts, including when you have many columns or other corner case the old code never correctly handled)
[03:32] <Elv13_> There is an issue left when there is more than 2 sub levels in the same axis. But I know how to fix it


import java.io.*;
import java.rmi.*;
import java.rmi.activation.*;
import java.util.*;
import javax.naming.*;

public class WarehouseActivator {

  public static void main(String[] args) throws RemoteException, NamingException, ActivationException. IOException{

    System.out.println("Constructing activation descriptors...");

    Properties props = new Properties();
    // use the server.policy file in the current directory
    props.put("java.security.policy", new File("server policy").getCanonicalPath());
    ActivationGroupDesc group = new ActivationGroupDesc(props, null);
    ActivationGroupID id = ActivationGroup.getSystem().registerGroup(group);

    Map<String, Double> prices = new HashMap<>();
    prices.put("Blackwell Toaster", 24.95);
    prices.put("ZapXpress Microwave Oven", 49.95);
    MarshalledObject<Map<String, Double>> param = new MarshalledObject<Map<String, Double>>(prices);

    String codebase = "http://localhost:8080/";

    ActivationDesc = new ActivationDesc(id, "WarehouseImpl", codebase, param);
    Context namingContext = new InitialContext();
    namingContext.bind("rmi:central_warehouse", centralWarehouse);
    System.out.println("Exiting...");
   }
 }


I forgot to disable it by default


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 15037](https://teamcity.mesosphere.io/viewLog.html?buildId=129642&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 225 Build time: 00:04:11


Correct, it is a typo. :) (Will fix it.)


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 15038](https://teamcity.mesosphere.io/viewLog.html?buildId=129643&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 225 Build time: 00:03:58


@davidjgonzalez  please take a look. This fixes the broken test


Yes, I think that is all. I deleted the index.html file (it is auto generated), this file isn't visible here but i am not sure if should


Looks good! Reference implementation looks good. We should update the assignment writeup, see https://github.com/caltechcs2/concurrency/issues/1.


Re bracketing, I am strongly opinionated towards always using them:
- uniform look/style (exception: both `$1`/`$@` and `${1}`/`${@}` are OK)
- safe concatenation with the surrounding letters/words
  (you may need that in the future if not already, then you would
   break the style anyway, cf. previous point, so either way, it's
   better to use the from the beginning if possible)
- easily extensible to use `Parameter Expansion` (at least with bash)

Re whispace changes as separate commit:
- thought that NOOP/style-only change is OK to be accumulated


LAMA should not be needed for the networking API


shourly the network api would be a daemon, does it need to know this?


Блин, это такие мелочи.


футер визуально получился пикселей на 10 ниже чем нужно, но сначала нужно всё что выше него исправить, и потом уже корректировать его положение.


The [redux-slider-monitor](https://github.com/calesce/redux-slider-monitor/blob/master/src/Slider.js#L166) is  also used `zIndex`.


@malirod see https://github.com/LuxoftSDL/sdl_core/commit/dd83246bbda360556f99769cf3307709b6942d40


FYI: http://stackoverflow.com/questions/3462784/how-to-check-if-a-string-matches-an-ip-adress-pattern-in-python


No, for now linear is ok, I'll open a enhancement issue, where we can discuss an option that enables non-linear interpolations and plotting.

It is possible to draw an interpolation instead of the points with an option (not exactly sure, if hard coded or command line). But AFAIK there is only the linear option.


@malirod see https://github.com/LuxoftSDL/sdl_core/commit/01619fe2887c22ed72d8e10cc0b2c5605f744ffb


For forward compatibility, replace with const ```hive.SLAVE```


Два последних элемента, span и button должны иметь какую-то общую обёртку, и если на странице магазина её нет - то и там тоже. Эту обёртку надо задать, логично назвать её, и расположить её на этой странице в нужное место, ну и рамочки сделать, или, я бы конечно предпочёл просто фоновый цвет :)


Exit code of the script = exit code of the last statement.  Unfortunately if-statement resets it to 0. Hence we make sure that the last statement evaluates to the exit code of the original comparison. Hence `make best-match.sh return nonzero on fail`.


It seems using autoCommit transaction, is it ok here? Without error handling If two concurrent insert cause a primary key error, neither will be lockout.


^^ :8ball:


Needs comments
https://github.com/CC-Hive/Main#contributing-guide


Тот код в pages.cpp вроде бы совсем не нужен, т.к есть, код отдающий любую статическую страницу по прямлму обращению к ней


Needs comments: https://github.com/CC-Hive/Main#contributing-guide


Heh. I think the entire header needs to be reviewed incl. the copyrights etc


please update the release notes on the wiki https://wiki.jenkins-ci.org/display/JENKINS/HockeyApp+Plugin


Oh never mind. Sorry for the noise, I was checking commit by commit


заменить на normal+bold, cyriliic-ext на просто cyrilic


В соответствии с [Google C++ Style Guide](https://google.github.io/styleguide/cppguide.html) дефайн должен быть вида `<PROJECT>_<PATH>_<FILE>_H_`.


There's a typo `deifne` :)


can we use `default[:openstack][:tarball_branch]` to interpolate and deduce the name for `default[:openstack][:nova][:file]`, `default[:openstack][:neutron][:file]` and so on?


:+1: good job


Мне кажется, что можно обойтись и без отдельного файла макроса.


@timler done


И за одно: С архитектурной точки зрения там не везде все гладко. Где-то я даже добавил коментарии с наставлениями ). Временами я включал голову, но чаще всего нет(это так, что-бы вопросов не возникало, почему это именно там лежит). Модуль сцены нужно разделить на два: Низкоуровневую часть, и клиентскую(компоненты, ...).


Ha,  you still have :+1:

How's the superbowl ? I think it should be around now, right ?

On Mon, Feb 8, 2016 at 8:38 PM, Mario Giovacchini <notifications@github.com>
wrote:

> I was just impulsively looking for the "Like" button for this note. I need
> to spend less time on Facebook.
>
> —
> Reply to this email directly or view it on GitHub
> <https://github.com/NationalGenomicsInfrastructure/ngi_pipeline/commit/b93f52500a4e77d5173cb5e3da78e50ecc8abd11#commitcomment-15956493>
> .
>


It exists for that, so that's good.


C'est réglé pour CAS en retirant _once. J'avais pas relancé de session hier...


@charvolant will this cause the download of the image to always happen ? This will have a impact on harvesting from Volunteer portal + sources such as flickr which take a long time to reharvest from (days). It might be better to keep the check and provide a command line override that forces the image download.


Both RDEPENDS and SYSTEMD_SERVICE needs to go below do_install, they get used in do_package*.


я кстати пытался особо не колбасить уже существющий код(даже не удалял лишнего). Да, есть грешок: безмозгло перетащил view.


ha, I didn't realize that the visitor is used as many times as there are hashes in the array. Will revert.


Just for reference, it's more Pythonic to write:

```python

if variable:
    # code
```

Than it is to check for truthiness with `variable == true`.


согласен. лишнее.


That's also an option, but
- thought that history of `nvset.rng` is already complicated enough (it was named `options.rng`, IIRC)
- wasn't sure `-1.0` is completely appropriate (would expect it would be renamed at the first place otherwise)
- the change would have to be propagated down the line (`pacemaker*.rng`) and hence adding a new content incompatibility for files that should already have been stable
- one can checkout such new `Makefile.am` and `best-match.sh` from within the older revision and still have it reasonably working


Surely we should just follow the suggestion and use a while loop with conditional statements within


Где-то я делал спустя рукова, в надежде что кто-нибудь потом расширит функционал, если нужно.


@romw Any idea about my previous question? Thanks.


Откуда эти изображения?


сам делал


там альфа канал


ты запускал?


基本的に担当範囲は en/ja だけですが、軽微なので、
ko/zh_tw の方の修正もできたりしますでしょうか？


It looks ready to be merged. Have you tested the Prob scan option with the tutorial?


This seems wrong


should drop the plural in the message


well actually I'm wrong. It should be the other way around:

`process.CmdInternalError(Exception)` and `process.CmdError(CmdInternalError)` to allow users react on the internal vs. cmd error.


Oops no, thanks for catching this!


Yes. error is an instance of TestResult (see above)


Good question, I did that because of `pacemaker-%.rng` target requires it.
We should perhaps drop it everywhere instead.


Great, glad it's working! :)


Я завел отдельный html в views, т.к. я думаю что так все-таки будет шаблон


You are referring to the section above I suppose? Migrating the logic to `loci.common.DebugTools.isEnabled()` would certainly be sensible to me (and simplify unit testing!)


Oh, right! Good catch!!
I was waiting until the wiki page auto-updated (normal "up to 24 hrs") so as to avoid confusion, but then forgot :(
Just tried logging in but getting all sorts of weird LDAP and "communication error occurred" messages, so I'll try again tomorrow.


It's better to use a complete sentence to describe the test case, e.g. "A node with no existing pods can match a pod that has no required pod affinity scheduling requirements"


@pippercameron my personal blog is running on ProjectNami, I deployed it using the ARM button "Deply to Azure" so I assume it should be against master


Thanks for the patch, actually i already fixed it in my WIP as someone mentioned it on SpritesMind forum ;)


Yeah I know. I just did a (Ctrl h) replace of all (= 1) to (= True)


Yes, it is. Seems to be a legit fix, so I integrated it. Any issues with that?


varrr


OK, I have moved QgsGrassModule::findExec() to QgsGrass::findModule() and used it in QgsGrass::runModule() in 58beed2.


It was initially going to transition for width but I couldn't get it working so I just did background-color instead.


General comment - please remove all console outputs and all the commented code.


Right, so we have a test that fails if every outcome isn't visited, so we either add new outcomes to ```marriage-abroad-responses-and-expected-results.yml``` or we update the next_node value to the new outcome if tests for the country are already there.


Hi @rowanmiller ,

Thanks for taking up this so quickly :) .

Since this will be a common provider across all IBM data servers for ex: DB2 for z/OS, IDS, DB2 for IBM i, DB2 for LUW, we would like to replace **DB2 **with **DB ** .
Currently this beta release only supports DB2 for z/OS and we have plan to support other servers too.

The following are my review comments:
1)  docs/providers/**ibm-db2**/index.rst changed to(-->)  docs/providers/**IBMDB**/index.rst

2) In docs/providers/ibm-db2/index.rst file :
   a) IBM DB2 Data Server  --> **IBM Data Servers**

   b) +Supported Database Engines
+--------------------------
+
+IBM DB2 Database Server   --> **IBM Data Servers **

c)
+Supported Platforms
+-------------------
+
+ * Full .NET (4.5.1 onwards)
+ * DNX/ASP.NET 5 (dnx451 only) --> **remove this line. We only support FULL .Net(4.5.1 onwards) .**

3) in docs/providers/index.rst file :
ibm-db2/index  --> **IBMDB**/index

Additional info: for bug reports , users will need to post a question in the forum: .Net Development with DB2 and IDS
https://www.ibm.com/developerworks/community/forums/html/forum?id=11111111-0000-0000-0000-000000000467&ps=

Thanks,
Prashanth


haha good :eyes:


`Bsc` already stands for "Bin Sizes Configuration" as I understand so there is no need in the second `configuration` in the name.


You're right. I will change it back and make a new release, shouldn't be a big deal.


hmm shouldn't we configure those properties in the pom for all modules so that users just need to run mvn release:prepare and mvn release:perform?


I did it until 50. xD


Noob mak kra


Boom, done


TestTest


Hate mung kaaaaaaa


fixed


Have update that to ```_pay_by_cash_or_credit_card_no_cheque_nor_amex.govspeak.erb```


確かに現行の方が分かりやすいと思いますが、
今後、この関数を利用してコードを書く場合は、
「関数名が長くて pep8 を守るのが大変！」
にならなければいいんだけど...
と思っただけです。

(ご参考)
関数名の変更は PyCharm を使うと、１ステップです。
関数名の上で右クリック「Refactore」→「Rename」


`class_exists` doesn't return `TRUE` for interfaces. Did you mean `interface_exists`?


Domoticz does not receive data ...
![image](https://cloud.githubusercontent.com/assets/8523569/12911911/7e887952-cf26-11e5-8613-a3266638c6ef.png)

Tell me I'm doing the right thing? What you need to press the "save to ESP" or "Upload ..."? Library (bh1750.lua) to pour in esp8266?
Can I look in the console ESPlorer making esp8266?

I send the rows in esp8266 and after the command "end)" get "ь!m•†я1д)Mф1д)]†1¤сш" and then reboot ... (
![image](https://cloud.githubusercontent.com/assets/8523569/12911836/31374bc4-cf26-11e5-9fc3-5b1b98a11983.png)


done


So label is not dynamic, huh?


Mark the designated initializer with `NS_DESIGNATED_INITIALIZER` as described [here](https://developer.apple.com/library/ios/releasenotes/ObjectiveC/ModernizationObjC/AdoptingModernObjective-C/AdoptingModernObjective-C.html#//apple_ref/doc/uid/TP40014150-CH1-SW8).
I also suggest to turn off the NSObject designated initializer adding `NS_UNAVAILABLE`.
i.e:
`- (instancetype)init NS_UNAVAILABLE;`


Actually that is a good question, I am wondering if we should not got with Java 8 since our first target is the Studio 6.2 and the PRD specify it is java 8.

De : Francis Upton IV <notifications@github.com<mailto:notifications@github.com>>
Répondre à : Talend/daikon <reply@reply.github.com<mailto:reply@reply.github.com>>
Date : lundi 8 février 2016 21:01
À : Talend/daikon <daikon@noreply.github.com<mailto:daikon@noreply.github.com>>
Cc : Sebastien Gandon <sgandon@talend.com<mailto:sgandon@talend.com>>
Objet : Re: [daikon] TDKN-6 Move extended types stuff to Daikon (359da45)

Yes, it's not intended to go in as it is, needs a bunch of work that Ryan and I will do. Is Daikon Java 8 now?

—
Reply to this email directly or view it on GitHub<https://github.com/Talend/daikon/commit/359da4561bb02c9097d92b67d62cbfbd083149af#commitcomment-15957617>.


if there are some leaves, those will be combined with simplified expression into logical expression of the same type (AND in our case), see line 248


Wracając do SMARTY, to w composerze chyba da się wymusić konkretną wersją do pobrania


The main API decision I wanted to discuss was whether `bfInitLogging(level)` should override the current logging levels while `bfInitLogging()` would only check if loggers have been initialized.

The alternative would be to stick to the behavior `logging.basicConfig` and let advanced users use `loci.common.DebugTools.enableLogging(level)` to tune the logging level.


Hi,
Could we make it as boolean? What do you think? I would like to be strict with listing home content.


should have different description since this test case is different with the one above.


Tracking the gist for starting h2 database via maven.
https://gist.github.com/Ameausoone/4714699


В `GameHandler.hpp` объявляются классы, которые используются только в `GameHandler.cpp`. Почему нельзя было полностью перенести?


How does it work? Oo


We are, the aim is to have a while loop checking all sensors and the sensors generate events when conditions are met. We can then add any number of actions to them and modify them at runtime (eg depending on location)


зачем ты убрал методы update и collision? и как это теперь работает?


duplicated white-spaces:
```
labelselector  with
```


If I'm reading this correctly, this now seems to say that if there are *any* `contact_details`, but none of those with `type` of "twitter", we don't look in `links` any more? Previously it would have fallen through the `links` check in every case where it hadn't already found a match in `contact_details`…


What should happen if `default.json` does not exist ?


@danielstuart14 Got an updated screenshot? <3


**The code does not comply to PEP8.**
*PEP8Bear, severity 1, section `autopep8`.* *Related to file `setup.py`, line 51.*

The issue can be fixed by applying the following patch:

```diff
--- a/setup.py
+++ b/setup.py
@@ -49,6 +49,7 @@
         self.run_command('build_manpage')
         self.run_command('build_dbus')
         setuptools.command.build_py.build_py.run(self)
+

 class PyTestCommand(TestCommand):

```


(strlen(n_token) == 0) can be simplified to (*n_token == '\0')


Good one! Will do.


Because all social networks are at the bottom and YT was missing.


Hey. Unfortunately we frequently bump the versions of these assets, which means this won't work for long, as the URLs will have to change.


Hi:

after run bin/plugin -install elasticsearch/elasticsearch-hadoop/1.2.0 it say an ERROR: not plugin descriptor.properties is there.

Any other solution to store the data and index into hdfs?? i donw want snapshop, i want store the data al indexing from hdfs

thanks


Ah, I did not see that. Will include that next time.


I'll add constants in favor of readability (even though my personal opinion is that a developer that is uncertain should be able to read the fairly straight forward class documentation). I'm concerned that it will affect performance slightly though. Ruby is likely slower doing this:
```
guard.add_this(self) & RecursionGuard::SELF_RECURSION_IN_THIS) == 0
```
than this
```
guard.add_this(self) & 1) == 0
```
since there's no such thing as immutable constants in Ruby.


remove commented out code?


@danielstuart14 File: hud_stats.hpp

I'm OCD.


I will not agree with this way of injections. Think about agents as about isolated modules.
In future will be possible to register and inject your own agents. (Part of plugins feature)
So each agent should delegate possibility of injecting by itself.

Also it is preferable to keep InjectorClient logic in isolated module (most simple testing).


Another remark is that by using constants, it's much harder to read the actual implementation and understand that the binary & and | is combining bits in the same integer.


@etyrrill Shouldn't example in ApiModelProperty.class be changed to Object as well?


Hm, maybe we should add a comment on why we need this code?


Copy of code on line 51. Also, `strchr` is more simple way to split string to two parts.


.hotel-search-form {
    position: absolute;
    left: 0;
    right: 0;
    width: 570px;
    margin-left: auto;
    margin-right: auto;
}


This actually is a breaking change...


добавить сюда position: relative;


You should maybe add a comment here saying that this condition if for BC and should be removed in 4.0


In theory, not capturing tokens we're not looking to be using after the regex has been processed is good, however in practice the performance gain is very small, and it clutters the regular expressions a lot. I think we should avoid doing this on big highlighters such as this one, in the future.


testt


Hello, I check your branch.
Equal changes now in master.


Родитель нашей формы -
блок с классом offer, поэтому:
.offer { position: relative; }


Question:
Is the time mentioned in the tranport evidence protocol exactly the same as the time mentioned in the REM Evidence?


Also, you can use `is` instead `==/===` and `unless` instead `!condition`


Do we need `projectScopedName` when we already have a unique `path` to every component?


Typo, I think.


FYI I've reverted this change because it hides a true functional change.

It's up to the CSS plugin maintainers to decide whether or not they're happy with the new SQ 5.4 behavior (and change theirs integration tests), or if they're not change the way the plugin computes complexity.

Meanwhile, it's fine to leave the integration tests and the build failing - there is no obligation to fix anything immediately.

cc @kalidasya @racodond


Это нужно оставить до следующих коммитов. Как я понимаю, у нас одностраничное приложение и только главная страница должна собираться с помощью шаблонизатора.


Thanks for the explanation and insight @friedelwolff. That would mean having a `MIN_SIMILARITY` setting instead of `MAX_DISTANCE`; if that's in par with the rest of the tools I have no objections to make it consistent here and will adjust accordingly.


new SignatureBinder(typeManager, operator.getSignature(), false).extractBoundedVariables(actualSignature)


As discussed, the bug with the blood typing status being set to COMPLETE before the pending tests have been done has to do with the saved status of the donation. The rules engine is able to calculate the correct status eventually, but it appears that when the initial outcome is saved it is not correct and the COMPLETE status is persisted.

This means COMPLETED is shown in the table on the `Manage Test Batch` screen, but the correct status (NO_MATCH) is shown if you return to the page 'Record Blood Group Serology Results'.


This list is not initiated.


Working now :)


Should we be using SystemEnvironment for this?


баннеру можешь задать второй фон, с белой "ёлочкой"
Он будет хитро спозиционирован, чтобы нормально резиниться


ack


TeamCity OSS :: Kubernetes Mesos :: 4 - Smoke Tests [Build 15039](https://teamcity.mesosphere.io/viewLog.html?buildId=129648&buildTypeId=Oss_KubernetesMesos_5SmokeTestsDockerMesos&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 1, ignored: 225 Build time: 00:08:34


I did not want to make too many changes, can clean it up post 16.2.


Nice work!


Have split this into three commits now


This is causing errors for me on Python 2.7.10 x64 on Windows 8:

```
Traceback (most recent call last):
  File "C:\Program Files (x86)\Red Bull Technology\RBT VDG Python (x64)\lib\threading.py", line 810, in __bootstrap_inner
    self.run()
  File "C:\Program Files (x86)\Red Bull Technology\RBT VDG Python (x64)\lib\threading.py", line 763, in run
    self.__target(*self.__args, **self.__kwargs)
  File "C:\Program Files (x86)\Red Bull Technology\RBT VDG Python (x64)\lib\site-packages\concurrent\futures\process.py", line 235, in _queue_management_worker
    p.join(sys.maxint)
  File "C:\Program Files (x86)\Red Bull Technology\RBT VDG Python (x64)\lib\multiprocessing\process.py", line 145, in join
    res = self._popen.wait(timeout)
  File "C:\Program Files (x86)\Red Bull Technology\RBT VDG Python (x64)\lib\multiprocessing\forking.py", line 297, in wait
    res = _subprocess.WaitForSingleObject(int(self._handle), msecs)
OverflowError: Python int too large to convert to C long
```

Seems to be because sys.maxint is multiplied by 1000 in forking.py just before the call to WaitForSingleObject.


This method isn't related to the LoaderAdapter though. If moved, then I think it should go to the Loaders class.


fjklsadhfjkhslakjfhsjkadfhljksdhafjkd


sdfsdf


sadfsdfsdf


@LordUsagi
http://wowwiki.wikia.com/wiki/Critical_strike

Notable about critical strikes is that any non-spell attack on a sitting target will always result with a critical hit(taking into the account that you are more vulnerable sitting or lying down than you are standing face-to-face with your enemy).

This should also work on ranged spells, not only on meleehits :)


I have filed https://github.com/Microsoft/TypeScript-TmLanguage/issues/37 against the TypeScript grammar to not use the `keyword.operator` for above keywords. `keyword.operator` is also used for operators like `===`, `!=`


Картинка в баннере не должна резиниться, так что можно ей смело задать в Html и высоту тоже :)


So if we delete the `deb` file this will happen on every run? This will work properly for upgrading from the old supervisor task to the new one but should we change this to check what version of supervisor is installed instead? So the deb file can disappear and it won't trigger a download?


:+1: I wonder if this is change of location is something that ubuntu do when they make their packages?


Чудненько :)


What version of ansible supports this syntax? Do we need to update that in `meta/main.yaml`?


this commit lgtm


Does this mean this feature is incomplete? Why isn't this developed in a feature branch? This would also have avoided breaking master once more, a trap in which we just fell again...


I need to complete the timer module implementation.


#Derp. Indeed, will fix


missing 'l' in internalNote


this should reduce the amout of logs for some "normal" failures like wrong http code or timeout, while still showing us the info when something bad on consumer side might be happening


There seems to be two terms here: "defaults" set at initialization that users can override, and "fallbacks" that step in during finalization (whatever that is) if the user hasn't specified a value.


Ништяк!
Но раз уж используешь js - для блага последующих верстальщиков которые в теории могли бы над этим проектом работать - можешь вместо создания новой картинки и добавляения её в html добавить её в html сразу, и если
if (foundGoogle) {
  document.getElementById('.image_class').classList.add('.is-hidden');
  initialize();
} // else тут тогда даже не понадобится, но код который написал можешь закомментить, тчобы сохранился - он хороший.


<!DOCTYPE html>

        <meta charset="UTF-8">
        <title>Ponomarev</title>
    <link href="css/styles.css" rel="stylesheet">

Пономарев Юрий Георгиевич

Временно не работаю

Я хочу учить фронтэнд, потому что:

Мне это интересно

Мне это нравится

В продажах я себя исчерпал

Мой номер телефона
+380676386003

Mой профиль в фейсбук

            Fasebook

Мой фидбек:
Буду рекомендавать ваш курс своим друзьям и знакомым


I was hit by the same error as well. Hopefully this could be merged soon.


Ok, here is my output from the batchexporter2:

>------------- Starting Shaderbatcher -------------
>Compiling: animated.fx
>Compiling: astatic.fx
>Compiling: averagelum.fx
>Compiling: billboard.fx
>Compiling: blur_2d_rg16f_cs.fx
>Compiling: blur_2d_rg32f_cs.fx
>Compiling: blur_2d_rgba16f_cs.fx
>Compiling: blur_cube_rg16f_cs.fx
>Compiling: blur_cube_rg32f_cs.fx
>Compiling: blur_cube_rgba16f_cs.fx
>Compiling: box3taphori.fx
>Compiling: box3tapvert.fx
>Compiling: brightpass.fx
>Compiling: copy.fx
>Compiling: csmblur.fx
>Compiling: downscale.fx
>Compiling: emissive.fx
>Compiling: empty.fx
>Compiling: finalize.fx
>Compiling: finalize_simple.fx
>Compiling: foliage.fx
>Compiling: gather.fx
>Compiling: gatheralpha.fx
>Compiling: gaussianblur.fx
>Compiling: gaussianblur_cs_rgba16f.fx
>Compiling: gaussianblur_cs_rgba32f.fx
>Compiling: gaussianblur_cs_rgba8.fx
>Compiling: grid.fx
>Compiling: gui.fx
>Compiling: hbao.fx
>Compiling: hbaoblur.fx
>Compiling: hbaoblur_cs.fx
>Compiling: hbao_cs.fx
>Compiling: horizontalbloom.fx
>Compiling: imgui.fx
>Compiling: lightmapped.fx
>Compiling: lights.fx
>Compiling: lightscatter.fx
>Compiling: multilayered.fx
>Compiling: particle.fx
>Fragment shader failed to compile with the following errors:
>OpenGL warning in function 'ComputeCornerVertex' at row 65: error(#206) Assigning non-constant to: const 4X4 matrix of mat4 in file lib/particles.fxh.

>Compiling: picking.fx
>Compiling: placeholder.fx
>Compiling: reflectionprojector.fx
>Compiling: shadow.fx
>Compiling: shared.fx
>Compiling: silhouette.fx
>Compiling: simple.fx
>Compiling: skinned.fx
>Vertex shader failed to compile with the following errors:
>OpenGL warning in function 'SimpleColor' at row 8: error(#279) Invalid layout qualifier "xfb_buffer" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 8: error(#279) Invalid layout qualifier "xfb_offset" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 9: error(#279) Invalid layout qualifier "xfb_buffer" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 9: error(#279) Invalid layout qualifier "xfb_offset" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 10: error(#279) Invalid layout qualifier "xfb_buffer" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 10: error(#279) Invalid layout qualifier "xfb_offset" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 11: error(#279) Invalid layout qualifier "xfb_buffer" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 11: error(#279) Invalid layout qualifier "xfb_offset" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 12: error(#279) Invalid layout qualifier "xfb_buffer" in file lib/geometrybase.fxh.

>OpenGL warning in function 'SimpleColor' at row 12: error(#279) Invalid layout qualifier "xfb_offset" in file lib/geometrybase.fxh.

>Compiling: skybox.fx
>Compiling: sprite.fx
>Compiling: ssr_cs.fx
>Compiling: static.fx
>Compiling: subsurface.fx
>Compiling: subsurfacehorizontal.fx
>Compiling: subsurfacevertical.fx
>Compiling: text.fx
>Compiling: unlit.fx
>Compiling: verticalbloom.fx
>Compiling: volumefog.fx
>Compiling: volumelight.fx
>Compiling: water.fx
>Copied base frame shader: toolkit:work/frame/win32/csmshadowmapping.xml ---> dst:frame/csmshadowmapping.xml
>Copied base frame shader: toolkit:work/frame/win32/dx11default.xml ---> dst:frame/dx11default.xml
>Copied base frame shader: toolkit:work/frame/win32/dx9default.xml ---> dst:frame/dx9default.xml
>Copied base frame shader: toolkit:work/frame/win32/esmshadowmapping.xml ---> dst:frame/esmshadowmapping.xml
>Copied base frame shader: toolkit:work/frame/win32/godrays.xml ---> dst:frame/godrays.xml
>Copied base frame shader: toolkit:work/frame/win32/grassattributes.xml ---> dst:frame/grassattributes.xml
>Copied base frame shader: toolkit:work/frame/win32/grassheightmap.xml ---> dst:frame/grassheightmap.xml
>Copied base frame shader: toolkit:work/frame/win32/horizonambientocclusion.xml ---> dst:frame/horizonambientocclusion.xml
>Copied base frame shader: toolkit:work/frame/win32/ogl4default.xml ---> dst:frame/ogl4default.xml
>Copied base frame shader: toolkit:work/frame/win32/picking.xml ---> dst:frame/picking.xml
>Copied base frame shader: toolkit:work/frame/win32/reflection.xml ---> dst:frame/reflection.xml
>Copied base frame shader: toolkit:work/frame/win32/shadowmapping.xml ---> dst:frame/shadowmapping.xml
>Copied base material template table: toolkit:work/materials/base.xml ---> dst:materials/base.xml

particles.fxh can easily fixed...

I havn't looked in the skinned.fx in detail.

If I try to start the *contentbrowser* it could not load the compiled *shd:animated*. It crashes here: [https://github.com/gscept/nebula-trifid/blob/master/code/render/coregraphics/ogl4/ogl4uniformbuffer.cc#L65](url)

I tested under Win8.1 VS 2013 with an OpenGL 4.3 (ATI FirePro V(FireGL V) Graphics Adapter with 271 ext.)


no, i was enabling it always manually ...


can we put in a pkg/ in docker/docker and use it from there?


please set the price of paymentData to zero or something smalls since it represents a fee which the customer has to pay for using this payment method....no one would choose a specific payment method if there would be extra costs of about 200 euros....


Should we be using SystemEnvironment for this?


Is there a particular reason why the recently added items limit is used for here?

A limit makes sense for recently added because "Recent" is a nebulous concept - the list is sorted by date and some cut-off needs to be defined.

But a show is either "In progress" or not.  The list is sorted by title, it shouldn't stop at an arbitrary point down the alphabet.