[R/common.R:120:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
.toId <-
^~~~~
```
[R/common.R:131:50:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L131) *style:* **Only use double-quotes.**
```r
    return(paste("PacBio", "FileTypes", s, sep = '.'))
                                                 ^~~
```
[R/common.R:135:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
  return(.toId("task_options", s))
         ^~~~~
```
[R/common.R:139:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L139) *style:* **Variable and function names should be all lowercase.**
```r
  return(.toId("tasks", s))
         ^~~~~
```
[R/common.R:149:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L149) *style:* **Variable and function names should be all lowercase.**
```r
.toFileTypes <- function() {
^~~~~~~~~~~~
```
[R/common.R:151:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
  ^~~
```
[R/common.R:151:24:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
                       ^~~~~~~~
```
[R/common.R:151:34:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
                                 ^~~~~~~
```
[R/common.R:151:43:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
                                          ^~~~~~~~
```
[R/common.R:156:20:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L156) *style:* **Variable and function names should be all lowercase.**
```r
        baseName = baseName,
                   ^~~~~~~~
```
[R/common.R:158:11:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
          fileExt,
          ^~~~~~~
```
[R/common.R:159:20:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L159) *style:* **Variable and function names should be all lowercase.**
```r
        mimeType = mimeType
                   ^~~~~~~~
```
[R/common.R:172:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L172) *style:* **Variable and function names should be all lowercase.**
```r
  txt <- toF("txt", "file", "txt", "text/plain")
         ^~~
```
[R/common.R:173:12:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L173) *style:* **Variable and function names should be all lowercase.**
```r
  fasta <- toF("Fasta", "file", "fasta", "text/plain")
           ^~~
```
[R/common.R:174:12:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L174) *style:* **Variable and function names should be all lowercase.**
```r
  fastq <- toF("Fastq", "file", "fastq", "text/plain")
           ^~~
```
[R/common.R:175:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L175) *style:* **Variable and function names should be all lowercase.**
```r
  gff <- toF("Gff", "file", "gff", "text/plain")
         ^~~
```
[R/common.R:177:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L177) *style:* **Variable and function names should be all lowercase.**
```r
    toF("JsonReport", "file.report", "json", "application/json")
    ^~~
```
[R/common.R:179:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L179) *style:* **Variable and function names should be all lowercase.**
```r
  reseqCond = toF("COND_RESEQ",
  ^~~~~~~~~
```
[R/common.R:179:13:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L179) *style:* **Use <-, not =, for assignment.**
```r
  reseqCond = toF("COND_RESEQ",
            ^
```
[R/common.R:179:15:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L179) *style:* **Variable and function names should be all lowercase.**
```r
  reseqCond = toF("COND_RESEQ",
              ^~~
```
[R/common.R:190:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L190) *style:* **Variable and function names should be all lowercase.**
```r
    RESEQ_COND = reseqCond
                 ^~~~~~~~~
```
[R/common.R:196:14:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L196) *style:* **Variable and function names should be all lowercase.**
```r
FileTypes <- .toFileTypes()
             ^~~~~~~~~~~~
```
[R/common.R:198:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L198) *style:* **Variable and function names should be all lowercase.**
```r
.toSymbolTypes <- function() {
^~~~~~~~~~~~~~
```
[R/common.R:200:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L200) *style:* **Variable and function names should be all lowercase.**
```r
  symbolTypes <-
  ^~~~~~~~~~~
```
[R/common.R:202:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L202) *style:* **Variable and function names should be all lowercase.**
```r
  return(symbolTypes)
         ^~~~~~~~~~~
```
[R/common.R:209:16:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L209) *style:* **Variable and function names should be all lowercase.**
```r
SymbolTypes <- .toSymbolTypes()
               ^~~~~~~~~~~~~~
```
[R/common.R:211:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L211) *style:* **Variable and function names should be all lowercase.**
```r
.toResourceTypes <- function() {
^~~~~~~~~~~~~~~~
```
[R/common.R:212:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L212) *style:* **Variable and function names should be all lowercase.**
```r
  resourceTypes <-
  ^~~~~~~~~~~~~
```
[R/common.R:216:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L216) *style:* **Variable and function names should be all lowercase.**
```r
  return(resourceTypes)
         ^~~~~~~~~~~~~
```
[R/common.R:223:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/common.R#L223) *style:* **Variable and function names should be all lowercase.**
```r
ResourceTypes <- .toResourceTypes()
                 ^~~~~~~~~~~~~~~~
```
[R/driver.R:12:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L12) *style:* **lines should not be more than 80 characters.**
```r
  p <- argparser::add_argument(p, "mode", help = "Mode, emit-tc or run-rtc", type = "character")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:13:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L13) *style:* **lines should not be more than 80 characters.**
```r
  p <- argparser::add_argument(p, "rtc_or_output_dir", help = "run-rtc path/to/rtc.json OR emit-tc /path/to/output-dir",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:21:47:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
mainRegisteryMain <- function(registry, mode, rtcOrOutputDir) {
                                              ^~~~~~~~~~~~~~
```
[R/driver.R:22:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
  exitCode <- -1
  ^~~~~~~~
```
[R/driver.R:25:60:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
    logging::loginfo(paste("attempting to load RTC from ", rtcOrOutputDir))
                                                           ^~~~~~~~~~~~~~
```
[R/driver.R:26:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    rtcPath <- normalizePath(rtcOrOutputDir)
    ^~~~~~~
```
[R/driver.R:26:30:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    rtcPath <- normalizePath(rtcOrOutputDir)
                             ^~~~~~~~~~~~~~
```
[R/driver.R:27:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- registryRunner(registry, rtcPath)
    ^~~~~~~~
```
[R/driver.R:27:42:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- registryRunner(registry, rtcPath)
                                         ^~~~~~~
```
[R/driver.R:29:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L29) *style:* **Variable and function names should be all lowercase.**
```r
    outputDir <- normalizePath(rtcOrOutputDir)
    ^~~~~~~~~
```
[R/driver.R:29:32:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L29) *style:* **Variable and function names should be all lowercase.**
```r
    outputDir <- normalizePath(rtcOrOutputDir)
                               ^~~~~~~~~~~~~~
```
[R/driver.R:30:63:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L30) *style:* **Variable and function names should be all lowercase.**
```r
    logging::loginfo(paste("Emitting tool contracts to dir ", outputDir))
                                                              ^~~~~~~~~
```
[R/driver.R:31:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L31) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- emitRegistryToolContractsTo(registry, outputDir)
    ^~~~~~~~
```
[R/driver.R:31:55:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L31) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- emitRegistryToolContractsTo(registry, outputDir)
                                                      ^~~~~~~~~
```
[R/driver.R:33:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L33) *style:* **lines should not be more than 80 characters.**
```r
    cat(paste("Unsupported mode ", mode, " Suppored modes 'emit-tc', and 'run-rtc'"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:34:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- 2
    ^~~~~~~~
```
[R/driver.R:38:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
  runTime <- 1
  ^~~~~~~
```
[R/driver.R:39:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L39) *style:* **lines should not be more than 80 characters.**
```r
  cat(paste("Exiting main with exit code ", exitCode, "in ", runTime, " secs\n"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:39:45:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
  cat(paste("Exiting main with exit code ", exitCode, "in ", runTime, " secs\n"))
                                            ^~~~~~~~
```
[R/driver.R:39:62:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
  cat(paste("Exiting main with exit code ", exitCode, "in ", runTime, " secs\n"))
                                                             ^~~~~~~
```
[R/driver.R:40:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
  return(exitCode)
         ^~~~~~~~
```
[R/driver.R:55:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
  rtcOrOutputDir <- argv$rtc_or_output_dir
  ^~~~~~~~~~~~~~
```
[R/driver.R:56:44:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/driver.R#L56) *style:* **Variable and function names should be all lowercase.**
```r
  return(mainRegisteryMain(registry, mode, rtcOrOutputDir))
                                           ^~~~~~~~~~~~~~
```
[R/exampleTasks.R:7:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L7) *style:* **lines should not be more than 80 characters.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:7:36:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
                                   ^~~~~~~~~~~
```
[R/exampleTasks.R:7:49:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
                                                ^~~~~~~~~~~~~
```
[R/exampleTasks.R:7:64:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
                                                               ^~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:8:56:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("Writing filtered fasta to ", filteredFasta))
                                                       ^~~~~~~~~~~~~
```
[R/exampleTasks.R:9:40:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
  write(">r1\nACGT\n>r2\nACCCGGTTT\n", filteredFasta)
                                       ^~~~~~~~~~~~~
```
[R/exampleTasks.R:13:26:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L13) *style:* **Variable and function names should be all lowercase.**
```r
getPlotGroup <- function(outputPath) {
                         ^~~~~~~~~~
```
[R/exampleTasks.R:14:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroupId <- "plotgroup_a"
  ^~~~~~~~~~~
```
[R/exampleTasks.R:17:24:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L17) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  fun.1 <- function(x) { return(x^2 + x) }
                       ^
```
[R/exampleTasks.R:17:34:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L17) *style:* **Put spaces around all infix operators.**
```r
  fun.1 <- function(x) { return(x^2 + x) }
                                ~^~
```
[R/exampleTasks.R:17:42:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L17) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
  fun.1 <- function(x) { return(x^2 + x) }
                                         ^
```
[R/exampleTasks.R:19:42:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L19) *warning:* **no visible binding for global variable 'x', Did you mean 'p'?**
```r
  p <- ggplot2::ggplot(data = data.frame(x = 0), mapping = ggplot2::aes(x = x))
                                         ^
```
[R/exampleTasks.R:20:62:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L20) *style:* **Commas should always have a space after.**
```r
  p + ggplot2::stat_function(fun = fun.1) + ggplot2::xlim(-5,5)
                                                             ^
```
[R/exampleTasks.R:22:19:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
  ggplot2::ggsave(outputPath, plot = ggplot2::last_plot())
                  ^~~~~~~~~~
```
[R/exampleTasks.R:24:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
  basePlotFileName <- basename(outputPath)
  ^~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:24:32:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
  basePlotFileName <- basename(outputPath)
                               ^~~~~~~~~~
```
[R/exampleTasks.R:27:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L27) *style:* **lines should not be more than 80 characters.**
```r
  p1 <- methods::new("ReportPlot", id = "parabola_dev_example", image = basePlotFileName)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:27:73:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
  p1 <- methods::new("ReportPlot", id = "parabola_dev_example", image = basePlotFileName)
                                                                        ^~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:28:46:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
  pg <- methods::new("ReportPlotGroup", id = plotGroupId, plots = list(p1))
                                             ^~~~~~~~~~~
```
[R/exampleTasks.R:37:32:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
examplefastaReport <- function(pathToFasta, reportPath) {
                               ^~~~~~~~~~~
```
[R/exampleTasks.R:37:45:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
examplefastaReport <- function(pathToFasta, reportPath) {
                                            ^~~~~~~~~~
```
[R/exampleTasks.R:38:49:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("loading fasta file ", pathToFasta))
                                                ^~~~~~~~~~~
```
[R/exampleTasks.R:39:56:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("will be writing report to ", reportPath))
                                                       ^~~~~~~~~~
```
[R/exampleTasks.R:41:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L41) *style:* **Variable and function names should be all lowercase.**
```r
  imageName <- "report_plot.png"
  ^~~~~~~~~
```
[R/exampleTasks.R:43:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
  reportDir <- dirname(reportPath)
  ^~~~~~~~~
```
[R/exampleTasks.R:43:24:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
  reportDir <- dirname(reportPath)
                       ^~~~~~~~~~
```
[R/exampleTasks.R:44:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  imagePath <- file.path(reportDir, imageName)
  ^~~~~~~~~
```
[R/exampleTasks.R:44:26:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  imagePath <- file.path(reportDir, imageName)
                         ^~~~~~~~~
```
[R/exampleTasks.R:44:37:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  imagePath <- file.path(reportDir, imageName)
                                    ^~~~~~~~~
```
[R/exampleTasks.R:46:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
  reportUUID <- uuid::UUIDgenerate()
  ^~~~~~~~~~
```
[R/exampleTasks.R:47:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L47) *style:* **Variable and function names should be all lowercase.**
```r
  reportId <- "pbcommandr_dev_fasta"
  ^~~~~~~~
```
[R/exampleTasks.R:51:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- list(getPlotGroup(imagePath))
  ^~~~~~~~~~
```
[R/exampleTasks.R:51:35:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- list(getPlotGroup(imagePath))
                                  ^~~~~~~~~
```
[R/exampleTasks.R:55:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
  uuid = reportUUID,
         ^~~~~~~~~~
```
[R/exampleTasks.R:57:8:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L57) *style:* **Variable and function names should be all lowercase.**
```r
  id = reportId,
       ^~~~~~~~
```
[R/exampleTasks.R:58:16:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L58) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups = plotGroups,
               ^~~~~~~~~~
```
[R/exampleTasks.R:62:23:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L62) *style:* **Variable and function names should be all lowercase.**
```r
  writeReport(report, reportPath)
                      ^~~~~~~~~~
```
[R/exampleTasks.R:63:46:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L63) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("Wrote report to ", reportPath))
                                             ^~~~~~~~~~
```
[R/exampleTasks.R:72:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L72) *style:* **Variable and function names should be all lowercase.**
```r
  minLength <- 25
  ^~~~~~~~~
```
[R/exampleTasks.R:74:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L74) *style:* **Variable and function names should be all lowercase.**
```r
    minLength))
    ^~~~~~~~~
```
[R/exampleTasks.R:82:27:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
runHelloWorld <- function(inputTxt, outputTxt) {
                          ^~~~~~~~
```
[R/exampleTasks.R:82:37:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
runHelloWorld <- function(inputTxt, outputTxt) {
                                    ^~~~~~~~~
```
[R/exampleTasks.R:83:44:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
  msg <- paste("Hello World. Input File ", inputTxt)
                                           ^~~~~~~~
```
[R/exampleTasks.R:84:19:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L84) *style:* **Variable and function names should be all lowercase.**
```r
  cat(msg, file = outputTxt)
                  ^~~~~~~~~
```
[R/exampleTasks.R:96:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L96) *style:* **lines should not be more than 80 characters.**
```r
  # The driver is what pbsmrtpipe will call with the path to resolved tool contract
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:97:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L97) *style:* **lines should not be more than 80 characters.**
```r
  # JSON file FIXME. Not sure how to package exes with R to create a 'console entry
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:99:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L99) *style:* **lines should not be more than 80 characters.**
```r
  # FIXME. There's an extra shell layer to get packrat loaded so the exampleHelloWorld.R
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:102:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L102) *style:* **lines should not be more than 80 characters.**
```r
  # could be more clever and use partial application for registry, but this is fine
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:103:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L103) *style:* **lines should not be more than 80 characters.**
```r
  registerTool(r, "filterFasta", "0.1.0", c(FileTypes$FASTA), c(FileTypes$FASTA),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:105:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/exampleTasks.R#L105) *style:* **lines should not be more than 80 characters.**
```r
  registerTool(r, "fastaReport", "0.1.0", c(FileTypes$FASTA), c(FileTypes$REPORT),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:51:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
  taskId <- tc$tool_contract_id
  ^~~~~~
```
[R/io.R:52:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L52) *style:* **Variable and function names should be all lowercase.**
```r
  inputFiles <- Map(dToInputType, tc$input_types)
  ^~~~~~~~~~
```
[R/io.R:53:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L53) *style:* **Variable and function names should be all lowercase.**
```r
  outputFiles <- Map(dToOutputType, tc$output_types)
  ^~~~~~~~~~~
```
[R/io.R:55:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
  toolContractTask <-
  ^~~~~~~~~~~~~~~~
```
[R/io.R:60:16:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L60) *style:* **Variable and function names should be all lowercase.**
```r
      taskId = taskId,
               ^~~~~~
```
[R/io.R:61:20:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L61) *style:* **Variable and function names should be all lowercase.**
```r
      inputTypes = inputFiles,
                   ^~~~~~~~~~
```
[R/io.R:62:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L62) *style:* **Variable and function names should be all lowercase.**
```r
      outputTypes = outputFiles,
                    ^~~~~~~~~~~
```
[R/io.R:66:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L66) *style:* **Variable and function names should be all lowercase.**
```r
  toolContract <-
  ^~~~~~~~~~~~
```
[R/io.R:67:41:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L67) *style:* **Variable and function names should be all lowercase.**
```r
    methods::new("ToolContract", task = toolContractTask, driver = driver)
                                        ^~~~~~~~~~~~~~~~
```
[R/io.R:68:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L68) *style:* **Variable and function names should be all lowercase.**
```r
  return(toolContract)
         ^~~~~~~~~~~~
```
[R/io.R:80:31:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
writeToolContract <- function(toolContract, jsonPath) {
                              ^~~~~~~~~~~~
```
[R/io.R:80:45:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
writeToolContract <- function(toolContract, jsonPath) {
                                            ^~~~~~~~
```
[R/io.R:84:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L84) *style:* **Variable and function names should be all lowercase.**
```r
    toolContract@task@taskId,
    ^~~~~~~~~~~~
```
[R/io.R:86:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L86) *style:* **Variable and function names should be all lowercase.**
```r
    jsonPath
    ^~~~~~~~
```
[R/io.R:89:40:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L89) *style:* **Variable and function names should be all lowercase.**
```r
  desc <- paste("Tool Contract from ", toolContract@task@taskId)
                                       ^~~~~~~~~~~~
```
[R/io.R:90:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L90) *style:* **Variable and function names should be all lowercase.**
```r
  authorComment <-
  ^~~~~~~~~~~~~
```
[R/io.R:92:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L92) *style:* **Variable and function names should be all lowercase.**
```r
  isDistributed <- FALSE
  ^~~~~~~~~~~~~
```
[R/io.R:93:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
  schemaOptions <- list()
  ^~~~~~~~~~~~~
```
[R/io.R:95:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L95) *style:* **lines should not be more than 80 characters.**
```r
  # The 'id' needs to be fixed. ft@fileTypeId_{index} this isn't really used in the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:97:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L97) *style:* **Variable and function names should be all lowercase.**
```r
  toInputType <- function(ft, i) {
  ^~~~~~~~~~~
```
[R/io.R:101:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    splitID <- strsplit(ft@fileTypeId, "\\.")[[1]]
    ^~~~~~~
```
[R/io.R:102:12:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L102) *style:* **Variable and function names should be all lowercase.**
```r
    ext <- splitID[length(splitID)]
           ^~~~~~~
```
[R/io.R:102:27:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L102) *style:* **Variable and function names should be all lowercase.**
```r
    ext <- splitID[length(splitID)]
                          ^~~~~~~
```
[R/io.R:114:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L114) *style:* **Variable and function names should be all lowercase.**
```r
  toOutputType <- function(ft) {
  ^~~~~~~~~~~~
```
[R/io.R:115:9:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L115) *style:* **Use <-, not =, for assignment.**
```r
    tmp = toInputType(ft)
        ^
```
[R/io.R:115:11:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L115) *style:* **Variable and function names should be all lowercase.**
```r
    tmp = toInputType(ft)
          ^~~~~~~~~~~
```
[R/io.R:120:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
  inputTypes <- Map(toInputType, toolContract@task@inputTypes)
  ^~~~~~~~~~
```
[R/io.R:120:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
  inputTypes <- Map(toInputType, toolContract@task@inputTypes)
                    ^~~~~~~~~~~
```
[R/io.R:120:34:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
  inputTypes <- Map(toInputType, toolContract@task@inputTypes)
                                 ^~~~~~~~~~~~
```
[R/io.R:121:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
  outputTypes <- Map(toOutputType, toolContract@task@outputTypes)
  ^~~~~~~~~~~
```
[R/io.R:121:22:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
  outputTypes <- Map(toOutputType, toolContract@task@outputTypes)
                     ^~~~~~~~~~~~
```
[R/io.R:121:36:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
  outputTypes <- Map(toOutputType, toolContract@task@outputTypes)
                                   ^~~~~~~~~~~~
```
[R/io.R:124:40:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L124) *style:* **Variable and function names should be all lowercase.**
```r
    list(serialization = "json", exe = toolContract@driver@exe)
                                       ^~~~~~~~~~~~
```
[R/io.R:131:14:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L131) *style:* **Variable and function names should be all lowercase.**
```r
      name = toolContract@task@name,
             ^~~~~~~~~~~~
```
[R/io.R:132:15:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L132) *style:* **Variable and function names should be all lowercase.**
```r
      nproc = toolContract@task@nproc,
              ^~~~~~~~~~~~
```
[R/io.R:133:24:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L133) *style:* **Variable and function names should be all lowercase.**
```r
      is_distributed = isDistributed,
                       ^~~~~~~~~~~~~
```
[R/io.R:134:24:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L134) *style:* **Variable and function names should be all lowercase.**
```r
      schema_options = schemaOptions,
                       ^~~~~~~~~~~~~
```
[R/io.R:135:26:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
      tool_contract_id = toolContract@task@taskId,
                         ^~~~~~~~~~~~
```
[R/io.R:136:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
      input_types = inputTypes,
                    ^~~~~~~~~~
```
[R/io.R:137:22:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L137) *style:* **Variable and function names should be all lowercase.**
```r
      output_types = outputTypes,
                     ^~~~~~~~~~~
```
[R/io.R:138:17:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L138) *style:* **Variable and function names should be all lowercase.**
```r
      comment = authorComment
                ^~~~~~~~~~~~~
```
[R/io.R:145:26:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L145) *style:* **Variable and function names should be all lowercase.**
```r
      tool_contract_id = toolContract@task@taskId,
                         ^~~~~~~~~~~~
```
[R/io.R:149:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L149) *style:* **Variable and function names should be all lowercase.**
```r
  jsonToolContract <-
  ^~~~~~~~~~~~~~~~
```
[R/io.R:151:7:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  cat(jsonToolContract, file = jsonPath)
      ^~~~~~~~~~~~~~~~
```
[R/io.R:151:32:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  cat(jsonToolContract, file = jsonPath)
                               ^~~~~~~~
```
[R/io.R:152:10:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L152) *style:* **Variable and function names should be all lowercase.**
```r
  return(jsonToolContract)
         ^~~~~~~~~~~~~~~~
```
[R/io.R:158:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
  taskId <- t$tool_contract_id
  ^~~~~~
```
[R/io.R:161:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L161) *style:* **Variable and function names should be all lowercase.**
```r
  inputFiles <- t$input_files
  ^~~~~~~~~~
```
[R/io.R:163:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L163) *style:* **Variable and function names should be all lowercase.**
```r
  outputFiles <- t$output_files
  ^~~~~~~~~~~
```
[R/io.R:167:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L167) *style:* **Variable and function names should be all lowercase.**
```r
  taskType <- "NA"
  ^~~~~~~~
```
[R/io.R:168:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L168) *style:* **Variable and function names should be all lowercase.**
```r
  taskOptions <- list()
  ^~~~~~~~~~~
```
[R/io.R:171:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L171) *style:* **Variable and function names should be all lowercase.**
```r
  resolvedToolContractTask <-
  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:174:16:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L174) *style:* **Variable and function names should be all lowercase.**
```r
      taskId = taskId,
               ^~~~~~
```
[R/io.R:175:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L175) *style:* **Variable and function names should be all lowercase.**
```r
      taskType = taskType,
                 ^~~~~~~~
```
[R/io.R:176:20:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L176) *style:* **Variable and function names should be all lowercase.**
```r
      inputFiles = inputFiles,
                   ^~~~~~~~~~
```
[R/io.R:177:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L177) *style:* **Variable and function names should be all lowercase.**
```r
      outputFiles = outputFiles,
                    ^~~~~~~~~~~
```
[R/io.R:178:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L178) *style:* **Variable and function names should be all lowercase.**
```r
      taskOptions = taskOptions,
                    ^~~~~~~~~~~
```
[R/io.R:183:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L183) *style:* **lines should not be more than 80 characters.**
```r
  methods::new("ResolvedToolContract", task = resolvedToolContractTask, driver = driver)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:183:47:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L183) *style:* **Variable and function names should be all lowercase.**
```r
  methods::new("ResolvedToolContract", task = resolvedToolContractTask, driver = driver)
                                              ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:197:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L197) *style:* **Variable and function names should be all lowercase.**
```r
      condId = d$condId,
                 ^~~~~~
```
[R/io.R:207:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L207) *style:* **Variable and function names should be all lowercase.**
```r
  pipelineId <- d$pipelineId
  ^~~~~~~~~~
```
[R/io.R:207:19:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L207) *style:* **Variable and function names should be all lowercase.**
```r
  pipelineId <- d$pipelineId
                  ^~~~~~~~~~
```
[R/io.R:211:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/io.R#L211) *style:* **Variable and function names should be all lowercase.**
```r
    pipelineId = pipelineId,
                 ^~~~~~~~~~
```
[R/pbreportsModel.R:42:28:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L42) *style:* **Variable and function names should be all lowercase.**
```r
writeReport <- function(r, outputPath) {
                           ^~~~~~~~~~
```
[R/pbreportsModel.R:44:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  toI <- function(i) {
  ^~~
```
[R/pbreportsModel.R:48:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L48) *style:* **Variable and function names should be all lowercase.**
```r
  attributeToD <- function(a) {
  ^~~~~~~~~~~~
```
[R/pbreportsModel.R:50:12:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L50) *style:* **Variable and function names should be all lowercase.**
```r
      id = toI(a@id),
           ^~~
```
[R/pbreportsModel.R:56:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L56) *style:* **Variable and function names should be all lowercase.**
```r
  plotToD <- function(p) {
  ^~~~~~~
```
[R/pbreportsModel.R:60:12:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L60) *style:* **Variable and function names should be all lowercase.**
```r
      id = toI(p@id)
           ^~~
```
[R/pbreportsModel.R:64:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L64) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroupToD <- function(p) {
  ^~~~~~~~~~~~
```
[R/pbreportsModel.R:65:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L65) *style:* **Variable and function names should be all lowercase.**
```r
    plots <- Map(plotToD, p@plots)
                 ^~~~~~~
```
[R/pbreportsModel.R:73:12:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L73) *style:* **Variable and function names should be all lowercase.**
```r
      id = toI(p@id),
           ^~~
```
[R/pbreportsModel.R:81:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L81) *style:* **Variable and function names should be all lowercase.**
```r
  attributes <- Map(attributeToD, r@attributes)
                    ^~~~~~~~~~~~
```
[R/pbreportsModel.R:82:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- Map(plotGroupToD, r@plotGroups)
  ^~~~~~~~~~
```
[R/pbreportsModel.R:82:21:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- Map(plotGroupToD, r@plotGroups)
                    ^~~~~~~~~~~~
```
[R/pbreportsModel.R:90:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L90) *style:* **Variable and function names should be all lowercase.**
```r
    plotGroups = plotGroups,
                 ^~~~~~~~~~
```
[R/pbreportsModel.R:95:20:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/pbreportsModel.R#L95) *style:* **Variable and function names should be all lowercase.**
```r
  write(sx, file = outputPath)
                   ^~~~~~~~~~
```
[R/registry.R:9:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L9) *style:* **lines should not be more than 80 characters.**
```r
ToolRegistry <- setRefClass("ToolRegistry", fields = list(namespace = "character",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:13:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L13) *style:* **lines should not be more than 80 characters.**
```r
registerTool <- function(registeryObj, idx, version, inputTypes, outputTypes, nproc,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:13:26:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L13) *style:* **Variable and function names should be all lowercase.**
```r
registerTool <- function(registeryObj, idx, version, inputTypes, outputTypes, nproc,
                         ^~~~~~~~~~~~
```
[R/registry.R:13:54:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L13) *style:* **Variable and function names should be all lowercase.**
```r
registerTool <- function(registeryObj, idx, version, inputTypes, outputTypes, nproc,
                                                     ^~~~~~~~~~
```
[R/registry.R:13:66:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L13) *style:* **Variable and function names should be all lowercase.**
```r
registerTool <- function(registeryObj, idx, version, inputTypes, outputTypes, nproc,
                                                                 ^~~~~~~~~~~
```
[R/registry.R:14:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
  isDistributed, rtcRunnerFunc) {
  ^~~~~~~~~~~~~
```
[R/registry.R:14:18:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
  isDistributed, rtcRunnerFunc) {
                 ^~~~~~~~~~~~~
```
[R/registry.R:18:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L18) *style:* **Variable and function names should be all lowercase.**
```r
  taskId <- paste(registeryObj$namespace, "tasks", idx, sep = ".")
  ^~~~~~
```
[R/registry.R:18:19:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L18) *style:* **Variable and function names should be all lowercase.**
```r
  taskId <- paste(registeryObj$namespace, "tasks", idx, sep = ".")
                  ^~~~~~~~~~~~
```
[R/registry.R:20:31:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
  name <- paste("Task Name ", taskId)
                              ^~~~~~
```
[R/registry.R:21:37:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
  desc <- paste("Description for ", taskId)
                                    ^~~~~~
```
[R/registry.R:22:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
  taskOptions <- list()
  ^~~~~~~~~~~
```
[R/registry.R:24:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
  taskType <- "stuff"
  ^~~~~~~~
```
[R/registry.R:26:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L26) *style:* **lines should not be more than 80 characters.**
```r
  tcTask <- methods::new("ToolContractTask", taskId = taskId, taskType = taskType, inputTypes = inputTypes,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:26:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
  tcTask <- methods::new("ToolContractTask", taskId = taskId, taskType = taskType, inputTypes = inputTypes,
  ^~~~~~
```
[R/registry.R:26:55:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
  tcTask <- methods::new("ToolContractTask", taskId = taskId, taskType = taskType, inputTypes = inputTypes,
                                                      ^~~~~~
```
[R/registry.R:26:74:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
  tcTask <- methods::new("ToolContractTask", taskId = taskId, taskType = taskType, inputTypes = inputTypes,
                                                                         ^~~~~~~~
```
[R/registry.R:26:97:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
  tcTask <- methods::new("ToolContractTask", taskId = taskId, taskType = taskType, inputTypes = inputTypes,
                                                                                ^~~~~~~~~~
```
[R/registry.R:27:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L27) *style:* **lines should not be more than 80 characters.**
```r
    outputTypes = outputTypes, taskOptions = taskOptions, nproc = nproc, resourceTypes = resources,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:27:19:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    outputTypes = outputTypes, taskOptions = taskOptions, nproc = nproc, resourceTypes = resources,
                  ^~~~~~~~~~~
```
[R/registry.R:27:46:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    outputTypes = outputTypes, taskOptions = taskOptions, nproc = nproc, resourceTypes = resources,
                                             ^~~~~~~~~~~
```
[R/registry.R:30:5:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L30) *style:* **Commented code should be removed.**
```r
  # emit-tool-contract /path/to/output-tool-contract.json
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:31:46:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L31) *style:* **Variable and function names should be all lowercase.**
```r
  driver <- methods::new("ToolDriver", exe = registeryObj$driver)
                                             ^~~~~~~~~~~~
```
[R/registry.R:32:45:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L32) *style:* **Variable and function names should be all lowercase.**
```r
  tc <- methods::new("ToolContract", task = tcTask, driver = driver)
                                            ^~~~~~
```
[R/registry.R:34:56:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("Registering tool contract ", taskId))
                                                       ^~~~~~
```
[R/registry.R:35:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$toolContracts[[taskId]] <- tc
  ^~~~~~~~~~~~
```
[R/registry.R:35:16:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$toolContracts[[taskId]] <- tc
               ^~~~~~~~~~~~~
```
[R/registry.R:35:31:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$toolContracts[[taskId]] <- tc
                              ^~~~~~
```
[R/registry.R:37:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$rtcRunners[[taskId]] <- rtcRunnerFunc
  ^~~~~~~~~~~~
```
[R/registry.R:37:16:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$rtcRunners[[taskId]] <- rtcRunnerFunc
               ^~~~~~~~~~
```
[R/registry.R:37:28:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$rtcRunners[[taskId]] <- rtcRunnerFunc
                           ^~~~~~
```
[R/registry.R:37:40:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
  registeryObj$rtcRunners[[taskId]] <- rtcRunnerFunc
                                       ^~~~~~~~~~~~~
```
[R/registry.R:44:29:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
registryBuilder <- function(toolNamespace, driverBase) {
                            ^~~~~~~~~~~~~
```
[R/registry.R:44:44:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
registryBuilder <- function(toolNamespace, driverBase) {
                                           ^~~~~~~~~~
```
[R/registry.R:46:1:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L46) *style:* **lines should not be more than 80 characters.**
```r
  r <- ToolRegistry$new(namespace = toolNamespace, driver = driverBase, toolContracts = list(),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:46:37:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
  r <- ToolRegistry$new(namespace = toolNamespace, driver = driverBase, toolContracts = list(),
                                    ^~~~~~~~~~~~~
```
[R/registry.R:46:61:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
  r <- ToolRegistry$new(namespace = toolNamespace, driver = driverBase, toolContracts = list(),
                                                            ^~~~~~~~~~
```
[R/registry.R:53:38:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L53) *style:* **Variable and function names should be all lowercase.**
```r
registryRunner <- function(registry, rtcPath) {
                                     ^~~~~~~
```
[R/registry.R:57:43:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L57) *style:* **Variable and function names should be all lowercase.**
```r
  rtc <- loadResolvedToolContractFromPath(rtcPath)
                                          ^~~~~~~
```
[R/registry.R:59:20:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
  func <- registry$rtcRunners[[tid]]
                   ^~~~~~~~~~
```
[R/registry.R:61:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L61) *style:* **Variable and function names should be all lowercase.**
```r
  exitCode <- func(rtc)
  ^~~~~~~~
```
[R/registry.R:61:3:](https://github.com/PacificBiosciences/pbcommandR/blob/dfccfeb062fc87446b40b924b616be14b8e92fda/R/registry.R#L61) *warning:* **local variable 'exitCode' assigned but may not be used**
```r
  exitCode <- func(rtc)
  ^~~~~~~~
```


That's cool. A straight port from C++ is exactly what it was, with all the fixed-point math still in place for no good reason, and just a quick shim between the SDL calls and Javascript's canvas. I never got around to trying other levels or doing anything with the player select screen, so I'll check out your work.


Oh! Ok


See https://github.com/mxe/mxe/pull/1336#issuecomment-222380052
Without `-O2` the build of x86_64-w64-mingw32.static is broken because of compiler internal error. This commit brings back `-O2 -g` overwritten by https://github.com/mxe/mxe/commit/b247344bdc579b2bd8b6a54e213f4ddf4081f187#diff-404c34f4f4cb71976798dddb76d87966R29

`-g` is not needed to fix the build, but MXE defaults to build with debug info. Those who doesn't need it, can apply `strip` to an executable or a library. As an exception, some huge libraries (e.g. qt) are built without `-g`.

By the way, I can't find the line in MXE sources which sets default compile mode to "-g -O2".

See also https://github.com/mxe/mxe/issues/985


Thanks, I only built qt and it indeed doesn't contain the debug info so I thought that's the default behavior.


OK, So, I add them ;)


@UniqMartin Thanks for the quickfix! I hate to nitpick, but I expect this to cause some breakage (turn keg-only formulas into normal ones) on some old CLT-only systems.

`MacOS::Xcode.version` can be non-null even if `MacOS::Xcode.installed?` is false but `MacOS::CLT.installed?` is true. So right now I'd expect you need
`(MacOS::Xcode.installed? || MacOS::CLT.installed?) && MacOS::Xcode.version < ???`.

That still relies on [this "hack"](https://github.com/Homebrew/brew/blob/master/Library/Homebrew/os/mac/xcode.rb#L103-L107), but I don't see how to avoid that without adding some `MacOS::CLT.equivalent_Xcode_version` method).

I suspect affected systems are very few; it seems you need to use a CLT mapping to Xcode < 5.0 and install CVS or untapped formula, the only `:provided_until_xcode5` formula I found. But I'd still fix this.
```
$ ack ':provided_until_xcode5' /usr/local/Library/Taps/
/usr/local/Library/Taps/homebrew/homebrew-core/Formula/cvs.rb
21:  keg_only :provided_until_xcode5
```


Should we revert those obsolete commits then? I know Eelco doesn't like propagatedBuildInputs in general, but IMHO, this is one of those times when it makes sense to use it.


good enough to become the new BEAM


Zostawię to na płytce stykowej. Postaram się ze wszystkim zdążyć do końca tygodnia.


delete


sej sem hotu popravt takoj, ko sm ugotovu, da ne dela, sam si me ti prehitu.


       Inbetween 437 and 438

         public void update() {
            loadShowBatteryTextSetting();
            updateBatteryLevelText();
            mBatteryLevel.setVisibility(mShowBatteryText ? View.VISIBLE : View.GONE);
        }


import android.provider.Settings;


Reverting should be fine. I had thought about pruning inputs even more, because I suspect that some deps on e.g., `libjpeg` are only to accommodate `gd` and are not used directly ... but that's more work than I care to put into this. In the end it makes little practical difference for existing, working builds.


no crc32?


Better include `crc32` in file. So that validation can be taken when recovered from shutdown.


10 copper coin = 1 silver coin
the 9 for 1 was because the "bank" takes a tax


TFs published at low frequency take up negligible bandwidth, even less if you use `tf_static`, which IIRC, has no timeout, so is only published once/as needed. If you don't use `tf_static`, be sure to future-date your static transforms because TF refuses to extrapolate into the future.


         public void update() {
        }
    }


I tried it locally and it worked :(


ok


En el cas del for, sí que és correcte usar només una variable anomenada i (no baixa punts, només t'ho dic perquè ho sàpigues).


prometheus client statistics seem to be broken :(

meshnodes_total 1095
meshnodes_online_total 930
clients_total undefined
clients_online_total undefined


为啥去掉const。。


Am I right in thinking that the changes in logger-ui had nothing to do with the js policy fixes for linked issue (#171) ?


Right, that's true.

Also if we do things "properly" we probably should configure automatic releases on Github as well. https://developer.github.com/v3/repos/releases/#create-a-release


Regels toegevoegd volgens testplan AAA


        @Override
        public void onChange(boolean selfChange, Uri uri) {


I can sympathise how masses of bad arguments can make one ignore a good argument that is similar to the bad arguments. But what I am doing in this thread, is trying to explore the *specific* details of the OWS position that "allowing LS will be costly". Please, do spend some time reading the exact wording and points that I wrote, instead of assuming they are the same as what was said before. I have also read some of those discussions, and not seen any *specific* discussion of the actual *underlying issues*, which is why I am bothering to spend time on a Sunday to talk about it here.

I can understand OWS' *fears* that LS *might be costly*. When you run a business, you have to think about risk. So yes, I do understand OWS' desire to restrict LS, as a *conservative risk estimate*, and other companies would do likelwise. I can understand that you guys are "not evil", and am not trying to argue that.

However, other companies that give more weight to the ideals of freedom, think through this risk estimate a bit more, and find out that actually, the original conservative risk estimate was too conservative, and that in practise the real costs are not actually that much - you get the benefit of both worlds, you can preserve user freedom and also your own costs. This is what I am trying to show in the above arguments. I encourage OWS to adopt this latter approach, and they are (as advertised) not trying to be like typical companies.

Sorry (and you too moxie) if my previous points came across as aggressive, it takes time to re-read and re-write my words to lessen that impression. The remaining undiscussed points are UX consistency, and the risk of developmental costs associated with that. I'm about ready to stop here, and we're probably not going to agree on these particular topics, but the discussion has been useful - it helps to clarify some OWS positions, such as not being too worried about LS popularity, or infrastructural cost, etc.


saliktas arī pogas tur kur vēl vajadzēja un izveidoti un izlaboti teksti:)


@varlesh  https://github.com/PapirusDevelopmentTeam/PKGBUILDs/commit/773ee83a1d643ca25f199a6f0e05060a7b9a1362


why uppercase?


Rename this file to `kernel_pool.rb`.


Dark magic


Great project! :trollface:


Maybe generic vector addition & subtraction would be better? I don't see a need for addition or subtraction besides this case in our server, hence the specialised method.


thanks


you're right, I'm sorry!
Should be fixed with #45


Wat? Zakaj sem pod contributorji? In 2 commita??? Sem mogoče pustil na katerm računalniku v git config moj username?


Found a solution, basically two lines to add up clients_total and  clients_online_total are missing:

diff --git a/modules/provider/prometheus-metrics.js b/modules/provider/prometheus-metrics.js
index 3d6aebd..608f5c1 100644
--- a/modules/provider/prometheus-metrics.js
+++ b/modules/provider/prometheus-metrics.js
@@ -88,16 +88,21 @@ module.exports = function(receiver, config) {
       if (_.has(n, 'nodeinfo.network.mesh')) {
         for (let bat in n.nodeinfo.network.mesh) {
           for (let type in n.nodeinfo.network.mesh[bat].interfaces) {
             n.nodeinfo.network.mesh[bat].interfaces[type].forEach((d) => {
               typeTable[d] = type
             })

           }
         }
       }
       counter.meshnodes.total++
+      counter.clients.total += get(n, 'statistics.clients.total')

-      if (isOnline(n))
+      if (isOnline(n)) {
         counter.meshnodes.online++
+        counter.clients.online += get(n, 'statistics.clients.total')
+      }

       var labels = {}
       labels['nodeid'] = k

--------

meshnodes_total 1096
meshnodes_online_total 921
clients_total 3016
clients_online_total 2774


Addressed this in https://github.com/Homebrew/brew/issues/317#issuecomment-223809560 as that's easier to find later than a comment attached to a commit.


Closed the project, Twisted is not the solutions!


这const并无卵用


@jonesra

Your name does not appear in the file. You did not proceed but doing a pull request that I can merge.
https://github.com/paceuniversity/courses


Nice. Now only remains add Papirus as default style on KaOS 😄
gtk-icon-theme not needed for KDE-based distro


Twisted is not event driven/


this.coordinates.get(i).setCoordinate(0 + first.getGridX(), 0 + first.getGridZ());  WTF?!?!


Yeah, I figured out how to fix this problem. Thanks.


Hello @ricarda42 ,
I think you didn't intended to left **getDelay property** out as comment while committing this commit.
for more information have a look at #55 .

Regards,
Hafiz


Extraneous space


ServerController is constructor or not? If it is, remove "void", if not rename method name.


This broke puppet on cp[12] and mw[12]. The private key was never added to private key.


skinfill?


@varlesh this is Your move... ;)


ja


na xubuntuju v delavnici zavoda 404


MEDICOO


`<td align="center";><h1> MEDICOO </h1></td>`


@rajukalagiri we have to cahnge name to medicoo as everyone will do for apt, i am unable to understand how to edit this code


вот тут можно разбить строчку по запятым и тире, вытянуть цену и тип размещения


Congratz for this first and not little commits list and welcome to our community.


Unfortunately the issue is not completely fixed with this commit as the number of online clients is only summed as long as statistics are available for the node.
Therefor I propose the following fix:

```
diff --git a/modules/provider/prometheus-metrics.js b/modules/provider/prometheus-metrics.js
index 50695a5..b74e5d7 100644
--- a/modules/provider/prometheus-metrics.js
+++ b/modules/provider/prometheus-metrics.js
@@ -86,16 +86,21 @@ module.exports = function(receiver, config) {
       if (_.has(n, 'nodeinfo.network.mesh')) {
         for (let bat in n.nodeinfo.network.mesh) {
           for (let type in n.nodeinfo.network.mesh[bat].interfaces) {
             n.nodeinfo.network.mesh[bat].interfaces[type].forEach((d) => {
               typeTable[d] = type
             })
           }
         }
       }
       counter.meshnodes.total++
+      counter.clients.total += get(n, 'statistics.clients.total')

-      if (isOnline(n))
-        counter.meshnodes.online++
+      if (isOnline(n)) {
+         counter.meshnodes.online++
+        counter.clients.online += get(n, 'statistics.clients.total')
+      }

       var labels = {}
       labels['nodeid'] = k
@@ -138,11 +143,8 @@ module.exports = function(receiver, config) {
         save(n, stream, labels, 'statistics.traffic.mgmt_rx.bytes', 'statistics_traffic')
         labels['type'] = 'tx'
         save(n, stream, labels, 'statistics.traffic.mgmt_tx.bytes', 'statistics_traffic')
-
-        counter.clients.online += get(n, 'statistics.clients.total')
       }

-      counter.clients.total += get(n, 'statistics.clients.total')
       counter.traffic.forward += get(n, 'statistics.traffic.forward.bytes')
       counter.traffic.rx += get(n, 'statistics.traffic.rx.bytes')
       counter.traffic.tx += get(n, 'statistics.traffic.tx.bytes')
```


1. If something doesn't work, don't put it into the `master` branch, please. Work on your own fork and make a pull request once it works. We don't need broken code.
2. The huge images are now duplicated in `graphics/` and `mpmp/raw/`.
3. The images in `mpmp/raw/` have the old names outdated since commit 1e4762d237ce6e2a25e46e3eb8531ce731a5bef7.


redis


I can't do it right now as it would be compatibility breaking change. There is a different programming pattern that does not store such methods and fields in a document instance and instead you invoke them like that:
```js
var product = new Product();
product.name = 'New Name';

entityManager.persist(product);
entityManager.flush();
```
So all the methods are store in the entity manager and you won't have any naming conflicts. However, I will consider introducing something like that in a version compatible with GraphQL/Apollo which will probably be a separate version.


@tronatula  It used to. That must be an introduced bug recently


Nice spot merging


Thank you. Feels good to be here.


it's a nonsens it's not like this on official and reput need to be > 0


Good job! :)) Jāmēģina ratiņi uztaisīt :D
2016. gada 5. jūn. 13:57, "kristapsnamejs" <notifications@github.com>
rakstīja:

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>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
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> or mute the thread
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>


master


Why is the text on the mockup "Weimar*er* Republi*c* Edition"? It should either be "Weimar Republic Edition" (English) or "Weimarer Republi*k-*Edition" (German).


The patch seems to break mob spawning at all :/ @frash23


root@hopglass:~# successfully parsed config file "./config.json"
purge old node 020038030100
purge old node 020038031000
purge old node 020038030700
purge old node 020038030702
purge old node 020038030800
purge old node 020038030802
purge old node 020038030501
purge old node 020038030502
purge old node 020038030503
collector listening on port 45123
webserver listening on port 4000
/home/hopglass/hopglass-server/modules/provider/prometheus-metrics.js:147
      counter.clients.total += get(n, 'statistics.clients.total')
                            ^

TypeError: Cannot create property 'total' on number '0'
    at /home/hopglass/hopglass-server/modules/provider/prometheus-metrics.js:147:29
    at Object.async.forEachOf.async.eachOf (/home/hopglass/hopglass-server/node_modules/async/lib/async.js:233:13)
    at Object.getMetrics [as metrics] (/home/hopglass/hopglass-server/modules/provider/prometheus-metrics.js:85:11)
    at Server.<anonymous> (/home/hopglass/hopglass-server/modules/webserver.js:38:20)
    at emitTwo (events.js:106:13)
    at Server.emit (events.js:191:7)
    at HTTPParser.parserOnIncoming [as onIncoming] (_http_server.js:543:12)
    at HTTPParser.parserOnHeadersComplete (_http_common.js:105:23)


@haendel7 src 속성이 뒤에 있던 앞에 있던, 알려주신 소스 코드의 동작에는 전혀 영향을 미치지 않습니다. 다른 원인이 있는 듯 합니다.


We could extract this data generation into a function for reuse :)


It would be nice to extract the javascript code into a .js file, and then link it in with a script tag's src attribute :)


```
diff --git a/modules/provider/prometheus-metrics.js b/modules/provider/prometheus-metrics.js
index 50695a5..0615530 100644
--- a/modules/provider/prometheus-metrics.js
+++ b/modules/provider/prometheus-metrics.js
@@ -72,7 +72,9 @@ module.exports = function(receiver, config) {
     counter.meshnodes = {}
     counter.meshnodes.online = 0
     counter.meshnodes.total = 0
-    counter.clients = 0
+    counter.clients = {}
+    counter.clients.online = 0
+    counter.clients.total = 0
     counter.traffic = {}
     counter.traffic.forward = 0
     counter.traffic.rx = 0
@@ -178,7 +182,8 @@ module.exports = function(receiver, config) {
       }, function() {
         stream.write('meshnodes_total ' + counter.meshnodes.total + '\n')
         stream.write('meshnodes_online_total ' + counter.meshnodes.online + '\n')
-        stream.write('total_clients ' + counter.clients + '\n')
+        stream.write('clients_total ' + counter.clients.total + '\n')
+        stream.write('clients_online_total ' + counter.clients.online + '\n')

         var labels = {}
```


I like the use of the random helper function


Line 15 could be broken up onto multiple lines to make it clearer


Иван Халков


Indentation is nice for readability :)


@Ad5001 please revert. Doing this completely messes up Travis. It is not set up yet, which is why I want it to be left as ImagicalCorp for now.


@neon22

This change filters the invisible components from the download.

To omit the transformation (scale) from the download I should implement dynamic links, otherwise making downloadable would cause a zoom action as side effect. Dynamic links would be better anyway: less to explain. For now you can set the scale to one (or whatever you like) with the advanced options and press the show button before make-downloadable.


Hmmm.... I'm not sure? I know one thing: ya have to have monster spawner files in multiple spots. One file just cannot cut it


This is good and 100% works here, but I personally think it's better to just put the script tag at the bottom of the file, that way it's guarenteed to load last.


Did anyone test the code before hitting pull/commit?

The number of online clients reported by prometheus is now way lower than the number shown in hopglass (for ffs: hopglass 2752 vs. prometheus 1141).

If the amount of clients online is summed in the "if(isOnline()) "block as proposed by me, the numbers match.


Can also use the `mySVG.width = 800` shorthand if you prefer.


Yes you right. Probably these changes were meant for another commit and I mistakenly committed them here.


``
diff --git a/modules/provider/prometheus-metrics.js b/modules/provider/prometheus-metrics.js
index 50695a5..03db804 100644
--- a/modules/provider/prometheus-metrics.js
+++ b/modules/provider/prometheus-metrics.js
@@ -72,7 +72,9 @@ module.exports = function(receiver, config) {
     counter.meshnodes = {}
     counter.meshnodes.online = 0
     counter.meshnodes.total = 0
-    counter.clients = 0
+    counter.clients = {}
+    counter.clients.online = 0
+    counter.clients.total = 0
     counter.traffic = {}
     counter.traffic.forward = 0
     counter.traffic.rx = 0
@@ -86,16 +88,21 @@ module.exports = function(receiver, config) {
       if (_.has(n, 'nodeinfo.network.mesh')) {
         for (let bat in n.nodeinfo.network.mesh) {
           for (let type in n.nodeinfo.network.mesh[bat].interfaces) {
             n.nodeinfo.network.mesh[bat].interfaces[type].forEach((d) => {
               typeTable[d] = type
             })
           }
         }
       }
       counter.meshnodes.total++
+      counter.clients.total += get(n, 'statistics.clients.total')

-      if (isOnline(n))
+      if (isOnline(n)) {
         counter.meshnodes.online++
+        counter.clients.online += get(n, 'statistics.clients.total')
+      }

       var labels = {}
       labels['nodeid'] = k
@@ -138,11 +145,8 @@ module.exports = function(receiver, config) {
         save(n, stream, labels, 'statistics.traffic.mgmt_rx.bytes', 'statistics_traffic')
         labels['type'] = 'tx'
         save(n, stream, labels, 'statistics.traffic.mgmt_tx.bytes', 'statistics_traffic')
-
-        counter.clients.online += get(n, 'statistics.clients.total')
       }

-      counter.clients.total += get(n, 'statistics.clients.total')
       counter.traffic.forward += get(n, 'statistics.traffic.forward.bytes')
       counter.traffic.rx += get(n, 'statistics.traffic.rx.bytes')
       counter.traffic.tx += get(n, 'statistics.traffic.tx.bytes')
@@ -178,7 +182,8 @@ module.exports = function(receiver, config) {
       }, function() {
         stream.write('meshnodes_total ' + counter.meshnodes.total + '\n')
         stream.write('meshnodes_online_total ' + counter.meshnodes.online + '\n')
-        stream.write('total_clients ' + counter.clients + '\n')
+        stream.write('clients_total ' + counter.clients.total + '\n')
+        stream.write('clients_online_total ' + counter.clients.online + '\n')

         var labels = {}
```


Nice


nice skill


this matching of colors is good


awesome


Фабрики не должно быть внутри ДАО, оно не должно знать что ее порождает фабрика. Мы позже не сможем отказаться от фабрики, если на нее будут ссылки.


не используй конкретную имплементацию для типа ссылок, достаточно  оставить List
Чем руководствовался когда выбирал LinkedList? он в 80% случаем медленнее ArrayList


Is this now a line comment?


سلام


خوبی


\cc @josevalim 👍


зачем оставил старые параметры?


This is hard to read. I think I would extract the code that builds the `d` string up into a function.

```javascript
function pathAttrD(d) {
  return (
    "M" + d.x + "," +
    d.y + "c" + d.s*-6 + "," +
    d.s*22.5 + "," +
    d.s*36 + "," +
    d.s*22.5 + "," +
    d.s*30 + "," +
    d.s*0 + "l" + d.s*-15 + "," +
    d.s*-30
  );
}

svgPath.setAttribute("d", pathAttrD(data[i]));
```

The function could be made clearer with well named variables, but I don't really know what any of those things are.


Since added 5 minutes after I commented above.


I managed to get my phone to soft reboot. This commit as well as other VM changes still need to be tested for longer.


Commented commit


NullPointerExeption回避


9 because craft -> https://github.com/MinetestForFun/server-minetestforfun/blob/master/mods/maptools/craftitems.lua#L54
otherwise the craft should be removed.


inv <- solve (mat, ...) produces an error ... use inv <- solve(mat) instead


Attachment original name is: Image-1.jpg
Subject of email is : UDisc iOS Scorecard - McClain Park (Default Layout - 05-28-2016 08:35 AM)
I would like the attachment to be renamed: McClain Park 05-28-2016 08:35 AM
I would think removing the "(Default Layout - " might be harder but to remove the "UDisc iOS Scorecard - " should be easy like remove the first 22 characters of the subject before the rename. I googled some and I could not find anything but I also have never scripted so ..... any help would be greatly appreciated.


Will have to load MASS package at beginning of the session.


Do have 16.04 with cinnamon 3.0.1 64 bit and and its working fine.

file structure:
 ls -a  .local/share/cinnamon/applets/
.  ..  StarkMenu@mintystark
ls -a  .local/share/cinnamon/applets/*
.  ..  applet.js  metadata.json  settings-schema.json  stylesheet.css

perhaps the files are in the wrong folder, had that issue and try using
3.0.1 and a cinnamon theme supporting it.

regards bluedxca93

On Sun, Jun 5, 2016 at 12:23 PM, Christian Medel <notifications@github.com>
wrote:

> @bluexdca93 the code you have in the repo
>
> Yeah, but what site? Deviant art?
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/bluedxca93/starkmenu/commit/af9a8d440444b373a32d658605d471ce863ffd2b#commitcomment-17744912>,
> or mute the thread
> <https://github.com/notifications/unsubscribe/AEJmrxFZVf0ew_Yym0AozwNlzRgypNm0ks5qIqOugaJpZM4Gz4qQ>
> .
>


This combined change, resolved the unbalanced irq 61 wakeup for LG G2.
and no issues with DATA traffic.


test


![2016-06-05_14-23-39](https://cloud.githubusercontent.com/assets/19761049/15805683/94bf1b18-2b29-11e6-948d-8d57d28e3dd3.png)

i have something bothering me in the latest fmd versions
The members in the picture i wont to get rid of them but i don't find the option to do so
so can you help ?


Ja to szanuję.


QuickStart-GettingStarted 這個部份我會幫忙簡轉繁！


nema potrebe ovako, moze direktno da vrati 302 redirect. samo mu stavi success:302  (vidi ovo: https://github.com/claudiajs/example-projects/blob/master/web-serving-html/web.js#L28)


Sure. Tell me what you need.


Where is your interface?


Opravena e ! Trqbva da se promeni navsqkude !


Can you give a more precise name for `firstStack` and `secondStack`?


Can you elaborate on this different programming pattern (or a link to read about it)? I am curious. Thank you.


eee


public static void main(String[] args){
System.out.println("hello world!");
}


Zeile ~~ 342, da fehlt noch das auch ne Tag-Liste geupdated wird, da man später im GET (alle Tags) aus dieser Liste läd.


How to improve this algorithm from `O(len(secondStack))` to `O(1)`?


疑 不用啦 我們已經有繁體的啦


Always use generics. Using object's results in cast operations and boxing/unboxing of value-types. Because of these reasons generics are faster and more elegant (no casting). And - the main reason - you won't get InvalidCastExceptions using generics.

So, generics are faster and errors are visible at compile-time. System.Object means runtime exceptions and casting which in general results in lower performance (sometimes MUCH lower).


主要程式為app.c


我個人不偏好把我們做的翻譯 PR 到 relay official repo，因為不同的檔案會增加 sync 的難度
除非我們有更好的做法


[R/nLTTDiff.R:44:38:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/R/nLTTDiff.R#L44) *style:* **Commas should always have a space after.**
```r
      lins1 <- lineages_N[max(index1,1)];
                                     ^
```
[R/nLTTDiff.R:46:39:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/R/nLTTDiff.R#L46) *style:* **Commas should always have a space after.**
```r
      lins2 <- lineages2_N[max(index2,1)];
                                      ^
```
[R/nLTTDiff.R:135:1:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/R/nLTTDiff.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
nLTTstat <- function( tree1, tree2, distance_method = "abs") {
^~~~~~~~
```
[R/nLTTDiff.R:153:11:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/R/nLTTDiff.R#L153) *warning:* **no visible global function definition for ‘nltt_diff’**
```r
  diff <- nltt_diff( tree1, tree2, distance_method);
          ^~~~~~~~~
```
[R/nLTTDiff.R:172:1:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/R/nLTTDiff.R#L172) *style:* **Variable and function names should be all lowercase.**
```r
nLTTstat_exact <- function(tree1, tree2, distance_method = "abs")   {
^~~~~~~~~~~~~~
```
[R/nLTTDiff.R:189:11:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/R/nLTTDiff.R#L189) *warning:* **no visible global function definition for ‘nltt_diff_exact’**
```r
  diff <- nltt_diff_exact( tree1, tree2, distance_method);
          ^~~~~~~~~~~~~~~
```
[tests/testthat.R:2:9:](https://github.com/richelbilderbeek/nLTT/blob/6fd2d884962992f5ed0d63fdfd1fa9df90525117/tests/testthat.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
library(nLTT)
        ^~~~
```


google is always help, it's proved again


Little mistake. The description starts with lower case here.


Another place you can clean up is the iffy grammar in basic brews.


BAsic Operations in R Assignment 2


You will have `Unhandled Exception: System.InvalidOperationException: Stack empty at System.Collections.Stack.Pop()` if you call `Dequeue()` before `Enqueue()`.
Please, create more useful unit tests.


sorry，我以為這是新增的檔案！XD
PR 到 relay official repo？


Its online as well ^


修正しました
ff1a9acc2fb26d449de5b72f254600a1672cebbb
043cabeb14d47a336bdc9210b924efa2a2e43800


修正しました
ff1a9acc2fb26d449de5b72f254600a1672cebbb


Damit ich das aber nicht jedes Mal selbst nachpflegen muss, mache ich dich einmalig drauf aufmerksam, damit du nächstes mal drauf achtest (;


Aber wozu brauche ich dann noch die Auswahlmöglichkeit dafür?


Changed aliases again, :)


Is it correct version ? I can't find photoshop 17.0. The latest version is 16.*.* according to photoshop's wiki page


@Kalashnikovni Todavía no tengo Control.Paralell xD, asi que esto necesita testeo. Lo único que hice fue ponerle los _ donde iban así le gusta a Martín jaja, y agregar la definición de scanS que nos había faltado despues de hacer los cambios.


Cool. :D


Wtf why


Do sega e davalo error connecting zashtoto purovoto v if e bilo mApiClient.isConnected()  . mApiClient e null za sega (ne e inicializirano) ,zatova hvurlq null pointer exeption !!!


社长，一个讨论，你就把2小时改成8小时。。。

又，
![2016-06-05_220011](https://cloud.githubusercontent.com/assets/18194126/15805875/f336846c-2b68-11e6-8772-9cdd6f3d7623.png)

我这一直都是有增无减，这里的IP到底是“封杀”多久的？


Each times move the shorter


Whooops... In the handleBroadcastReceived method there is a refernce left. Code would not compile


這些簡體的是直接 PR 過去，不過我覺得這樣更新很辛苦


Modify typo 'jupiter'


Fixed locally. I'm probably going to outright stop the game from booting on pre-GL2.1+FBO hardware, though.


this might be useful ... an allocator that can implement the same logic
that Jeff outlined.

https://howardhinnant.github.io/stack_alloc.html

On Wed, Jun 1, 2016 at 6:56 AM, robertjharrison <notifications@github.com>
wrote:

> I just pushed a new[]/delete[] fix so that this is not holding people up.
> Will install a better solution down the road.
>
> On Tue, May 31, 2016 at 5:06 PM, Jeff Hammond <notifications@github.com>
> wrote:
>
> > Rather than alloca, I would just have a fixed-size stack allocation that
> > is large enough for all of the common cases, and fall back to malloc if
> > necessary.
> >
> > if (m*n < 10000) {
> > double x[10000];
> > } else {
> > double * x = malloc(m*n*sizeof(double));
> > }
> >
> > —
> > You are receiving this because you authored the thread.
> > Reply to this email directly, view it on GitHub
> > <
> https://github.com/m-a-d-n-e-s-s/madness/commit/1fe04a89eeafa8e269c014d98ed8ee269e6cee9e#commitcomment-17686514
> >,
> > or mute the thread
> > <
> https://github.com/notifications/unsubscribe/AHMgPR3ZuKEJMO0jV1zWEBoXa_KLemlzks5qHKLYgaJpZM4Iq592
> >
> > .
> >
>
>
>
> --
> Robert J. Harrison
> tel: 865-272-9262
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/m-a-d-n-e-s-s/madness/commit/1fe04a89eeafa8e269c014d98ed8ee269e6cee9e#commitcomment-17694260>,
> or mute the thread
> <https://github.com/notifications/unsubscribe/ACF0Z5U-Bp1Dt9OSuUT3qbX49yfVEPVpks5qHWVygaJpZM4Iq592>
> .
>

--
web: valeyev.net


ご指摘ありがとうございます。/dom と合わせました。
ff1a9acc2fb26d449de5b72f254600a1672cebbb

動詞 `negotiate` は、TLSの仕様書などをみると特にアルゴリズムや鍵、セッションの交渉をする、という意味で使われるようです。今回目的語が不明確ではありますが。。

> One such encapsulated protocol, the TLS Handshake Protocol, allows the server and client to authenticate each other and to **negotiate** an encryption algorithm and cryptographic keys before the application protocol transmits or receives its first byte of data.

[英語](https://www.ipa.go.jp/security/rfc/RFC5246EN.html)

> そのようなカプセル化されたプロトコルのひとつとして、TLS ハンドシェイクプロトコルは、そのサーバおよびクライアントが相互に認証（authenticate）し、そのアプリケーションプロトコルが、データの最初のバイトを転送もしくは受信する前に、暗号化アルゴリズムおよび暗号鍵を**交渉**できるようにする。

[日本語](https://www.ipa.go.jp/security/rfc/RFC5246-01JA.html)


hey mate.
I use those 2 libs to avoid logcat spam:

https://github.com/JDCTeam/proprietary_vendor_samsung/commit/bc57a4cb7184c4622249e1808263a7f75118bbd3

https://github.com/JDCTeam/proprietary_vendor_samsung/commit/eb55e37d34826333deb0b795f9d99e9334275e5f

Works fine :) No adb spam anymore.i dont know if affects battery life


Thanks.  I added tests specifically to exercise getIndexOfPath before I made changes to it.  I think it is reasonably well covered already for cases involved a GitChangeSet.  I included some GitChangeSet's from the git-plugin history, including merges, changesets with no files, and changesets with multiple files.

The hypothetical case is purely a thought experiment, not anything I would ever expect to see in a GitChangeSet.  Git (and JGit) are unlikely to ever place the same file in a change set more than once, if only because they are content trackers and there is no need to track the same file (and its content) more than once in a change set.


#execute GITHUB.  Not just the local GIT.


I am running this on Visual studio 2015. There is a database connectivity issue in this. It gives error HTTP 404.0 after I try to login. Need help urgently.
Can you give me facebook or any contact number where I can explain it ?


@philmmanjaro i want update this pkg ( is too old ) .. but i need to add a dependence .. this is the right place or move to community ? :smile:


sudo_users = {Bl4ck_Nightmare},--Sudo users


Success !!


@steventran127 Could you share how to get the link? Thanks.


Please give me step by step instructions on how to make this work seamlessly. Please. Much needed help.


Hello @rpanichkin

I see that these changes are not related to what stated in the name of this commit.
Next time could you please place such changes in separate commits with more related name and description?
This would allow us to have more accurate commits history and find possible issues easier.

Thanks!


bad_addrs 和这里的“封杀”完全无关。

bad_addrs 是被墙掉的 IP，无法联通
这里的“封杀”是指可以联通，但是暂时不能当作 gws/gvs 使用的 google ip.


啊原來是這樣！這樣感覺不優。
我覺得還是像 C.T 你的作法比較好，另外開一個 branch 設為 default。


What's the reason for this `if`?


实现功能有限,暂且将这个定为1.0版本吧


from web


再问一个问题，

![2016-06-05_221327](https://cloud.githubusercontent.com/assets/18194126/15805975/4d5e8820-2b6b-11e6-9f0c-7eef8ef18ea2.png)

像 live.github.com 这种，它是 websockets 的， gae 应该不能搞定吧。
老是这样 get DEADLINE_EXCEEDED, retry...  刷屏。


Why was the other one removed?


@sanikoyes
I found this commit of ``label.cpp`` makes invisible last line of label.
So, it causes #5046.


suggest PV-TABLEs and PVs here (no apostrophe)


It's a little unusual in sbcl source to see keywords as loop keywords, if you see what I mean.


是啊，但是没有很好的办法，只能这样了。目前每次 DEADLINE_EXCEEDED 只会 retry 一次吧？


"... is used to implement the default method.", maybe?


Faltou a extensão .java neste arquivo.
Já foi resolvido no commit [5cfd6aadf55eaca3ab8d42cb5d22a3cae7d7ac07](https://github.com/julianomfferreira/INE5605-Trabalho-01/commit/5cfd6aadf55eaca3ab8d42cb5d22a3cae7d7ac07)


a couple of TODO items here: the probably-remove one is easy to resolve, but what does not work about (eq (generic-function-method-combination ...) *or-method-combination*)?  Bootstrapping issues, or something else?


--amend comming


可以把 live.github.com 添到 autoproxy.json 让它直连
但是一开 SiteFilters，GOP的内存占用就会上升一倍。。。


why doesnt it work for me?


This is wrong. It prevents usage of the SDK on a different application (such as MapTiler).


I'm not very sure that we want to use the ```else``` statement here.
There might be cases where we want to trigger JustSummoned for the summoner and the original caster at the same time.


@mjkkirschner We have a build 06/04 17:45, build 1.0.1.1557.


Trick or Treat disappeared in Cataclysm: http://us.battle.net/wow/en/forum/topic/3413141379


WHAT THE

REVERT


Is there any reason to not use dojo-core's streams? Or is that too meta to use our own stream implementation to build our code?