[R/common.R:120:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
.toId <-
^~~~~
```
[R/common.R:131:50:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L131) *style:* **Only use double-quotes.**
```r
    return(paste("PacBio", "FileTypes", s, sep = '.'))
                                                 ^~~
```
[R/common.R:135:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
  return(.toId("task_options", s))
         ^~~~~
```
[R/common.R:139:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L139) *style:* **Variable and function names should be all lowercase.**
```r
  return(.toId("tasks", s))
         ^~~~~
```
[R/common.R:149:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L149) *style:* **Variable and function names should be all lowercase.**
```r
.toFileTypes <- function() {
^~~~~~~~~~~~
```
[R/common.R:151:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
  ^~~
```
[R/common.R:151:24:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
                       ^~~~~~~~
```
[R/common.R:151:34:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
                                 ^~~~~~~
```
[R/common.R:151:43:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
  toF <- function(idx, baseName, fileExt, mimeType) {
                                          ^~~~~~~~
```
[R/common.R:156:20:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L156) *style:* **Variable and function names should be all lowercase.**
```r
        baseName = baseName,
                   ^~~~~~~~
```
[R/common.R:158:11:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
          fileExt,
          ^~~~~~~
```
[R/common.R:159:20:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L159) *style:* **Variable and function names should be all lowercase.**
```r
        mimeType = mimeType
                   ^~~~~~~~
```
[R/common.R:172:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L172) *style:* **Variable and function names should be all lowercase.**
```r
  txt <- toF("txt", "file", "txt", "text/plain")
         ^~~
```
[R/common.R:173:12:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L173) *style:* **Variable and function names should be all lowercase.**
```r
  fasta <- toF("Fasta", "file", "fasta", "text/plain")
           ^~~
```
[R/common.R:174:12:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L174) *style:* **Variable and function names should be all lowercase.**
```r
  fastq <- toF("Fastq", "file", "fastq", "text/plain")
           ^~~
```
[R/common.R:175:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L175) *style:* **Variable and function names should be all lowercase.**
```r
  gff <- toF("Gff", "file", "gff", "text/plain")
         ^~~
```
[R/common.R:177:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L177) *style:* **Variable and function names should be all lowercase.**
```r
    toF("JsonReport", "file.report", "json", "application/json")
    ^~~
```
[R/common.R:179:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L179) *style:* **Variable and function names should be all lowercase.**
```r
  reseqCond = toF("COND_RESEQ",
  ^~~~~~~~~
```
[R/common.R:179:13:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L179) *style:* **Use <-, not =, for assignment.**
```r
  reseqCond = toF("COND_RESEQ",
            ^
```
[R/common.R:179:15:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L179) *style:* **Variable and function names should be all lowercase.**
```r
  reseqCond = toF("COND_RESEQ",
              ^~~
```
[R/common.R:190:18:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L190) *style:* **Variable and function names should be all lowercase.**
```r
    RESEQ_COND = reseqCond
                 ^~~~~~~~~
```
[R/common.R:196:14:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L196) *style:* **Variable and function names should be all lowercase.**
```r
FileTypes <- .toFileTypes()
             ^~~~~~~~~~~~
```
[R/common.R:198:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L198) *style:* **Variable and function names should be all lowercase.**
```r
.toSymbolTypes <- function() {
^~~~~~~~~~~~~~
```
[R/common.R:200:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L200) *style:* **Variable and function names should be all lowercase.**
```r
  symbolTypes <-
  ^~~~~~~~~~~
```
[R/common.R:202:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L202) *style:* **Variable and function names should be all lowercase.**
```r
  return(symbolTypes)
         ^~~~~~~~~~~
```
[R/common.R:209:16:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L209) *style:* **Variable and function names should be all lowercase.**
```r
SymbolTypes <- .toSymbolTypes()
               ^~~~~~~~~~~~~~
```
[R/common.R:211:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L211) *style:* **Variable and function names should be all lowercase.**
```r
.toResourceTypes <- function() {
^~~~~~~~~~~~~~~~
```
[R/common.R:212:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L212) *style:* **Variable and function names should be all lowercase.**
```r
  resourceTypes <-
  ^~~~~~~~~~~~~
```
[R/common.R:216:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L216) *style:* **Variable and function names should be all lowercase.**
```r
  return(resourceTypes)
         ^~~~~~~~~~~~~
```
[R/common.R:223:18:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/common.R#L223) *style:* **Variable and function names should be all lowercase.**
```r
ResourceTypes <- .toResourceTypes()
                 ^~~~~~~~~~~~~~~~
```
[R/driver.R:12:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L12) *style:* **lines should not be more than 80 characters.**
```r
  p <- argparser::add_argument(p, "mode", help = "Mode, emit-tc or run-rtc", type = "character")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:13:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L13) *style:* **lines should not be more than 80 characters.**
```r
  p <- argparser::add_argument(p, "rtc_or_output_dir", help = "run-rtc path/to/rtc.json OR emit-tc /path/to/output-dir",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:21:47:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
mainRegisteryMain <- function(registry, mode, rtcOrOutputDir) {
                                              ^~~~~~~~~~~~~~
```
[R/driver.R:22:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
  exitCode <- -1
  ^~~~~~~~
```
[R/driver.R:25:60:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
    logging::loginfo(paste("attempting to load RTC from ", rtcOrOutputDir))
                                                           ^~~~~~~~~~~~~~
```
[R/driver.R:26:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    rtcPath <- normalizePath(rtcOrOutputDir)
    ^~~~~~~
```
[R/driver.R:26:30:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    rtcPath <- normalizePath(rtcOrOutputDir)
                             ^~~~~~~~~~~~~~
```
[R/driver.R:27:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- registryRunner(registry, rtcPath)
    ^~~~~~~~
```
[R/driver.R:27:42:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- registryRunner(registry, rtcPath)
                                         ^~~~~~~
```
[R/driver.R:29:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L29) *style:* **Variable and function names should be all lowercase.**
```r
    outputDir <- normalizePath(rtcOrOutputDir)
    ^~~~~~~~~
```
[R/driver.R:29:32:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L29) *style:* **Variable and function names should be all lowercase.**
```r
    outputDir <- normalizePath(rtcOrOutputDir)
                               ^~~~~~~~~~~~~~
```
[R/driver.R:30:63:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L30) *style:* **Variable and function names should be all lowercase.**
```r
    logging::loginfo(paste("Emitting tool contracts to dir ", outputDir))
                                                              ^~~~~~~~~
```
[R/driver.R:31:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L31) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- emitRegistryToolContractsTo(registry, outputDir)
    ^~~~~~~~
```
[R/driver.R:31:55:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L31) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- emitRegistryToolContractsTo(registry, outputDir)
                                                      ^~~~~~~~~
```
[R/driver.R:33:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L33) *style:* **lines should not be more than 80 characters.**
```r
    cat(paste("Unsupported mode ", mode, " Suppored modes 'emit-tc', and 'run-rtc'"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:34:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
    exitCode <- 2
    ^~~~~~~~
```
[R/driver.R:38:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
  runTime <- 1
  ^~~~~~~
```
[R/driver.R:39:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L39) *style:* **lines should not be more than 80 characters.**
```r
  cat(paste("Exiting main with exit code ", exitCode, "in ", runTime, " secs\n"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/driver.R:39:45:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
  cat(paste("Exiting main with exit code ", exitCode, "in ", runTime, " secs\n"))
                                            ^~~~~~~~
```
[R/driver.R:39:62:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
  cat(paste("Exiting main with exit code ", exitCode, "in ", runTime, " secs\n"))
                                                             ^~~~~~~
```
[R/driver.R:40:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
  return(exitCode)
         ^~~~~~~~
```
[R/driver.R:55:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
  rtcOrOutputDir <- argv$rtc_or_output_dir
  ^~~~~~~~~~~~~~
```
[R/driver.R:56:44:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/driver.R#L56) *style:* **Variable and function names should be all lowercase.**
```r
  return(mainRegisteryMain(registry, mode, rtcOrOutputDir))
                                           ^~~~~~~~~~~~~~
```
[R/exampleTasks.R:7:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L7) *style:* **lines should not be more than 80 characters.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:7:36:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
                                   ^~~~~~~~~~~
```
[R/exampleTasks.R:7:49:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
                                                ^~~~~~~~~~~~~
```
[R/exampleTasks.R:7:64:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
examplefilterFastaTask <- function(pathToFasta, filteredFasta, minSequenceLength) {
                                                               ^~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:8:56:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("Writing filtered fasta to ", filteredFasta))
                                                       ^~~~~~~~~~~~~
```
[R/exampleTasks.R:9:40:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
  write(">r1\nACGT\n>r2\nACCCGGTTT\n", filteredFasta)
                                       ^~~~~~~~~~~~~
```
[R/exampleTasks.R:13:26:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L13) *style:* **Variable and function names should be all lowercase.**
```r
getPlotGroup <- function(outputPath) {
                         ^~~~~~~~~~
```
[R/exampleTasks.R:14:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroupId <- "plotgroup_a"
  ^~~~~~~~~~~
```
[R/exampleTasks.R:17:24:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L17) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  fun.1 <- function(x) { return(x^2 + x) }
                       ^
```
[R/exampleTasks.R:17:34:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L17) *style:* **Put spaces around all infix operators.**
```r
  fun.1 <- function(x) { return(x^2 + x) }
                                ~^~
```
[R/exampleTasks.R:17:42:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L17) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
  fun.1 <- function(x) { return(x^2 + x) }
                                         ^
```
[R/exampleTasks.R:19:42:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L19) *warning:* **no visible binding for global variable 'x', Did you mean 'p'?**
```r
  p <- ggplot2::ggplot(data = data.frame(x = 0), mapping = ggplot2::aes(x = x))
                                         ^
```
[R/exampleTasks.R:20:62:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L20) *style:* **Commas should always have a space after.**
```r
  p + ggplot2::stat_function(fun = fun.1) + ggplot2::xlim(-5,5)
                                                             ^
```
[R/exampleTasks.R:22:19:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
  ggplot2::ggsave(outputPath, plot = ggplot2::last_plot())
                  ^~~~~~~~~~
```
[R/exampleTasks.R:24:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
  basePlotFileName <- basename(outputPath)
  ^~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:24:32:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
  basePlotFileName <- basename(outputPath)
                               ^~~~~~~~~~
```
[R/exampleTasks.R:27:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L27) *style:* **lines should not be more than 80 characters.**
```r
  p1 <- methods::new("ReportPlot", id = "parabola_dev_example", image = basePlotFileName)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:27:73:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
  p1 <- methods::new("ReportPlot", id = "parabola_dev_example", image = basePlotFileName)
                                                                        ^~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:28:46:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
  pg <- methods::new("ReportPlotGroup", id = plotGroupId, plots = list(p1))
                                             ^~~~~~~~~~~
```
[R/exampleTasks.R:37:32:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
examplefastaReport <- function(pathToFasta, reportPath) {
                               ^~~~~~~~~~~
```
[R/exampleTasks.R:37:45:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L37) *style:* **Variable and function names should be all lowercase.**
```r
examplefastaReport <- function(pathToFasta, reportPath) {
                                            ^~~~~~~~~~
```
[R/exampleTasks.R:38:49:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("loading fasta file ", pathToFasta))
                                                ^~~~~~~~~~~
```
[R/exampleTasks.R:39:56:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("will be writing report to ", reportPath))
                                                       ^~~~~~~~~~
```
[R/exampleTasks.R:41:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L41) *style:* **Variable and function names should be all lowercase.**
```r
  imageName <- "report_plot.png"
  ^~~~~~~~~
```
[R/exampleTasks.R:43:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
  reportDir <- dirname(reportPath)
  ^~~~~~~~~
```
[R/exampleTasks.R:43:24:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
  reportDir <- dirname(reportPath)
                       ^~~~~~~~~~
```
[R/exampleTasks.R:44:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  imagePath <- file.path(reportDir, imageName)
  ^~~~~~~~~
```
[R/exampleTasks.R:44:26:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  imagePath <- file.path(reportDir, imageName)
                         ^~~~~~~~~
```
[R/exampleTasks.R:44:37:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L44) *style:* **Variable and function names should be all lowercase.**
```r
  imagePath <- file.path(reportDir, imageName)
                                    ^~~~~~~~~
```
[R/exampleTasks.R:46:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
  reportUUID <- uuid::UUIDgenerate()
  ^~~~~~~~~~
```
[R/exampleTasks.R:47:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L47) *style:* **Variable and function names should be all lowercase.**
```r
  reportId = "pbcommandr_dev_fasta"
  ^~~~~~~~
```
[R/exampleTasks.R:47:12:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L47) *style:* **Use <-, not =, for assignment.**
```r
  reportId = "pbcommandr_dev_fasta"
           ^
```
[R/exampleTasks.R:49:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L49) *style:* **Use <-, not =, for assignment.**
```r
  tables = list()
         ^
```
[R/exampleTasks.R:50:14:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L50) *style:* **Use <-, not =, for assignment.**
```r
  attributes = list()
             ^
```
[R/exampleTasks.R:51:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- list(getPlotGroup(imagePath))
  ^~~~~~~~~~
```
[R/exampleTasks.R:51:35:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- list(getPlotGroup(imagePath))
                                  ^~~~~~~~~
```
[R/exampleTasks.R:55:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
  uuid = reportUUID,
         ^~~~~~~~~~
```
[R/exampleTasks.R:57:8:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L57) *style:* **Variable and function names should be all lowercase.**
```r
  id = reportId,
       ^~~~~~~~
```
[R/exampleTasks.R:58:16:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L58) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups = plotGroups,
               ^~~~~~~~~~
```
[R/exampleTasks.R:62:23:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L62) *style:* **Variable and function names should be all lowercase.**
```r
  writeReport(report, reportPath)
                      ^~~~~~~~~~
```
[R/exampleTasks.R:63:46:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L63) *style:* **Variable and function names should be all lowercase.**
```r
  logging::loginfo(paste("Wrote report to ", reportPath))
                                             ^~~~~~~~~~
```
[R/exampleTasks.R:72:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L72) *style:* **Variable and function names should be all lowercase.**
```r
  minLength <- 25
  ^~~~~~~~~
```
[R/exampleTasks.R:74:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L74) *style:* **Variable and function names should be all lowercase.**
```r
    minLength))
    ^~~~~~~~~
```
[R/exampleTasks.R:82:27:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
runHelloWorld <- function(inputTxt, outputTxt) {
                          ^~~~~~~~
```
[R/exampleTasks.R:82:37:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
runHelloWorld <- function(inputTxt, outputTxt) {
                                    ^~~~~~~~~
```
[R/exampleTasks.R:83:44:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
  msg <- paste("Hello World. Input File ", inputTxt)
                                           ^~~~~~~~
```
[R/exampleTasks.R:84:19:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L84) *style:* **Variable and function names should be all lowercase.**
```r
  cat(msg, file = outputTxt)
                  ^~~~~~~~~
```
[R/exampleTasks.R:96:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L96) *style:* **lines should not be more than 80 characters.**
```r
  # The driver is what pbsmrtpipe will call with the path to resolved tool contract
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:97:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L97) *style:* **lines should not be more than 80 characters.**
```r
  # JSON file FIXME. Not sure how to package exes with R to create a 'console entry
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:99:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L99) *style:* **lines should not be more than 80 characters.**
```r
  # FIXME. There's an extra shell layer to get packrat loaded so the exampleHelloWorld.R
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:102:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L102) *style:* **lines should not be more than 80 characters.**
```r
  # could be more clever and use partial application for registry, but this is fine
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:103:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L103) *style:* **lines should not be more than 80 characters.**
```r
  registerTool(r, "filterFasta", "0.1.0", c(FileTypes$FASTA), c(FileTypes$FASTA),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/exampleTasks.R:105:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/exampleTasks.R#L105) *style:* **lines should not be more than 80 characters.**
```r
  registerTool(r, "fastaReport", "0.1.0", c(FileTypes$FASTA), c(FileTypes$REPORT),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:23:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L23) *style:* **lines should not be more than 80 characters.**
```r
  return(methods::new("InputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:23:59:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L23) *style:* **Put spaces around all infix operators.**
```r
  return(methods::new("InputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description))
                                                         ~^~
```
[R/io.R:23:79:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L23) *style:* **Put spaces around all infix operators.**
```r
  return(methods::new("InputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description))
                                                                             ~^~
```
[R/io.R:28:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L28) *style:* **lines should not be more than 80 characters.**
```r
  return(methods::new("OutputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description, baseName=d$default_name))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:28:60:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L28) *style:* **Put spaces around all infix operators.**
```r
  return(methods::new("OutputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description, baseName=d$default_name))
                                                          ~^~
```
[R/io.R:28:80:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L28) *style:* **Put spaces around all infix operators.**
```r
  return(methods::new("OutputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description, baseName=d$default_name))
                                                                              ~^~
```
[R/io.R:28:134:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L28) *style:* **Put spaces around all infix operators.**
```r
  return(methods::new("OutputFileType", title = d$title, id=d$title, fileTypeId=d$file_type_id, description = d$description, baseName=d$default_name))
                                                                                ~^~
```
[R/io.R:34:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
  taskId <- tc$tool_contract_id
  ^~~~~~
```
[R/io.R:35:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
  inputFiles <- Map(dToInputType, tc$input_types)
  ^~~~~~~~~~
```
[R/io.R:36:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
  outputFiles <- Map(dToOutputType, tc$output_types)
  ^~~~~~~~~~~
```
[R/io.R:38:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L38) *style:* **lines should not be more than 80 characters.**
```r
  toolContractTask <- methods::new("ToolContractTask", name = tc$name, description = tc$description,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:38:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
  toolContractTask <- methods::new("ToolContractTask", name = tc$name, description = tc$description,
  ^~~~~~~~~~~~~~~~
```
[R/io.R:39:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L39) *style:* **lines should not be more than 80 characters.**
```r
    taskId = taskId, inputTypes = inputFiles, outputTypes = outputFiles, nproc = nproc)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:39:14:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    taskId = taskId, inputTypes = inputFiles, outputTypes = outputFiles, nproc = nproc)
             ^~~~~~
```
[R/io.R:39:35:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    taskId = taskId, inputTypes = inputFiles, outputTypes = outputFiles, nproc = nproc)
                                  ^~~~~~~~~~
```
[R/io.R:39:61:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    taskId = taskId, inputTypes = inputFiles, outputTypes = outputFiles, nproc = nproc)
                                                            ^~~~~~~~~~~
```
[R/io.R:41:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L41) *style:* **lines should not be more than 80 characters.**
```r
  toolContract <- methods::new("ToolContract", task = toolContractTask, driver = driver)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:41:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L41) *style:* **Variable and function names should be all lowercase.**
```r
  toolContract <- methods::new("ToolContract", task = toolContractTask, driver = driver)
  ^~~~~~~~~~~~
```
[R/io.R:41:55:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L41) *style:* **Variable and function names should be all lowercase.**
```r
  toolContract <- methods::new("ToolContract", task = toolContractTask, driver = driver)
                                                      ^~~~~~~~~~~~~~~~
```
[R/io.R:42:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L42) *style:* **Variable and function names should be all lowercase.**
```r
  return(toolContract)
         ^~~~~~~~~~~~
```
[R/io.R:54:31:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L54) *style:* **Variable and function names should be all lowercase.**
```r
writeToolContract <- function(toolContract, jsonPath) {
                              ^~~~~~~~~~~~
```
[R/io.R:54:45:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L54) *style:* **Variable and function names should be all lowercase.**
```r
writeToolContract <- function(toolContract, jsonPath) {
                                            ^~~~~~~~
```
[R/io.R:57:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L57) *style:* **lines should not be more than 80 characters.**
```r
  logging::logdebug(paste("Writing tool contract", toolContract@task@taskId, "to", jsonPath))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:57:52:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L57) *style:* **Variable and function names should be all lowercase.**
```r
  logging::logdebug(paste("Writing tool contract", toolContract@task@taskId, "to", jsonPath))
                                                   ^~~~~~~~~~~~
```
[R/io.R:57:84:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L57) *style:* **Variable and function names should be all lowercase.**
```r
  logging::logdebug(paste("Writing tool contract", toolContract@task@taskId, "to", jsonPath))
                                                                                ^~~~~~~~
```
[R/io.R:59:40:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
  desc <- paste("Tool Contract from ", toolContract@task@taskId)
                                       ^~~~~~~~~~~~
```
[R/io.R:60:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L60) *style:* **lines should not be more than 80 characters.**
```r
  authorComment <- paste("Created from pbcommandR version ", PB_COMMANDR_VERSION)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:60:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L60) *style:* **Variable and function names should be all lowercase.**
```r
  authorComment <- paste("Created from pbcommandR version ", PB_COMMANDR_VERSION)
  ^~~~~~~~~~~~~
```
[R/io.R:61:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L61) *style:* **Variable and function names should be all lowercase.**
```r
  isDistributed <- FALSE
  ^~~~~~~~~~~~~
```
[R/io.R:62:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L62) *style:* **Variable and function names should be all lowercase.**
```r
  schemaOptions <- list()
  ^~~~~~~~~~~~~
```
[R/io.R:64:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L64) *style:* **lines should not be more than 80 characters.**
```r
  # The 'id' needs to be fixed. ft@fileTypeId_{index} this isn't really used in the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:66:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L66) *style:* **Variable and function names should be all lowercase.**
```r
  toInputType <- function(ft, i) {
  ^~~~~~~~~~~
```
[R/io.R:67:18:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L67) *style:* **Use <-, not =, for assignment.**
```r
    file_type_id = ft@fileTypeId
                 ^
```
[R/io.R:70:5:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L70) *style:* **Variable and function names should be all lowercase.**
```r
    splitID = strsplit(ft@fileTypeId, "\\.")[[1]]
    ^~~~~~~
```
[R/io.R:70:13:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L70) *style:* **Use <-, not =, for assignment.**
```r
    splitID = strsplit(ft@fileTypeId, "\\.")[[1]]
            ^
```
[R/io.R:71:9:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L71) *style:* **Use <-, not =, for assignment.**
```r
    ext = splitID[length(splitID)]
        ^
```
[R/io.R:71:11:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L71) *style:* **Variable and function names should be all lowercase.**
```r
    ext = splitID[length(splitID)]
          ^~~~~~~
```
[R/io.R:71:26:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L71) *style:* **Variable and function names should be all lowercase.**
```r
    ext = splitID[length(splitID)]
                         ^~~~~~~
```
[R/io.R:74:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L74) *style:* **lines should not be more than 80 characters.**
```r
      sep = "_"), title = paste("Display name ", file_type_id), description = paste("File type ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:75:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L75) *style:* **lines should not be more than 80 characters.**
```r
                                                                                file_type_id)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:79:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L79) *style:* **Variable and function names should be all lowercase.**
```r
  toOutputType <- function(ft) {
  ^~~~~~~~~~~~
```
[R/io.R:80:9:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L80) *style:* **Use <-, not =, for assignment.**
```r
    tmp = toInputType(ft)
        ^
```
[R/io.R:80:11:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
    tmp = toInputType(ft)
          ^~~~~~~~~~~
```
[R/io.R:85:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L85) *style:* **Variable and function names should be all lowercase.**
```r
  inputTypes <- Map(toInputType, toolContract@task@inputTypes)
  ^~~~~~~~~~
```
[R/io.R:85:21:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L85) *style:* **Variable and function names should be all lowercase.**
```r
  inputTypes <- Map(toInputType, toolContract@task@inputTypes)
                    ^~~~~~~~~~~
```
[R/io.R:85:34:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L85) *style:* **Variable and function names should be all lowercase.**
```r
  inputTypes <- Map(toInputType, toolContract@task@inputTypes)
                                 ^~~~~~~~~~~~
```
[R/io.R:86:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L86) *style:* **Variable and function names should be all lowercase.**
```r
  outputTypes <- Map(toOutputType, toolContract@task@outputTypes)
  ^~~~~~~~~~~
```
[R/io.R:86:22:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L86) *style:* **Variable and function names should be all lowercase.**
```r
  outputTypes <- Map(toOutputType, toolContract@task@outputTypes)
                     ^~~~~~~~~~~~
```
[R/io.R:86:36:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L86) *style:* **Variable and function names should be all lowercase.**
```r
  outputTypes <- Map(toOutputType, toolContract@task@outputTypes)
                                   ^~~~~~~~~~~~
```
[R/io.R:88:49:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L88) *style:* **Variable and function names should be all lowercase.**
```r
  jdriver <- list(serialization = "json", exe = toolContract@driver@exe)
                                                ^~~~~~~~~~~~
```
[R/io.R:90:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L90) *style:* **lines should not be more than 80 characters.**
```r
  jt <- list(task_type = "pbsmrtpipe.task_types.standard", resource_types = list(),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:91:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L91) *style:* **lines should not be more than 80 characters.**
```r
    description = desc, name = toolContract@task@name, nproc = toolContract@task@nproc,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:91:32:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
    description = desc, name = toolContract@task@name, nproc = toolContract@task@nproc,
                               ^~~~~~~~~~~~
```
[R/io.R:91:64:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
    description = desc, name = toolContract@task@name, nproc = toolContract@task@nproc,
                                                               ^~~~~~~~~~~~
```
[R/io.R:92:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L92) *style:* **lines should not be more than 80 characters.**
```r
    is_distributed = isDistributed, schema_options = schemaOptions, tool_contract_id = toolContract@task@taskId,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:92:22:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L92) *style:* **Variable and function names should be all lowercase.**
```r
    is_distributed = isDistributed, schema_options = schemaOptions, tool_contract_id = toolContract@task@taskId,
                     ^~~~~~~~~~~~~
```
[R/io.R:92:54:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L92) *style:* **Variable and function names should be all lowercase.**
```r
    is_distributed = isDistributed, schema_options = schemaOptions, tool_contract_id = toolContract@task@taskId,
                                                     ^~~~~~~~~~~~~
```
[R/io.R:92:88:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L92) *style:* **Variable and function names should be all lowercase.**
```r
    is_distributed = isDistributed, schema_options = schemaOptions, tool_contract_id = toolContract@task@taskId,
                                                                                ^~~~~~~~~~~~
```
[R/io.R:93:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L93) *style:* **lines should not be more than 80 characters.**
```r
    input_types = inputTypes, output_types = outputTypes, comment = authorComment)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:93:19:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
    input_types = inputTypes, output_types = outputTypes, comment = authorComment)
                  ^~~~~~~~~~
```
[R/io.R:93:46:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
    input_types = inputTypes, output_types = outputTypes, comment = authorComment)
                                             ^~~~~~~~~~~
```
[R/io.R:93:69:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
    input_types = inputTypes, output_types = outputTypes, comment = authorComment)
                                                                    ^~~~~~~~~~~~~
```
[R/io.R:95:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L95) *style:* **lines should not be more than 80 characters.**
```r
  j <- list(version = PB_COMMANDR_VERSION, driver = jdriver, tool_contract_id = toolContract@task@taskId,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:95:81:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L95) *style:* **Variable and function names should be all lowercase.**
```r
  j <- list(version = PB_COMMANDR_VERSION, driver = jdriver, tool_contract_id = toolContract@task@taskId,
                                                                                ^~~~~~~~~~~~
```
[R/io.R:98:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L98) *style:* **Variable and function names should be all lowercase.**
```r
  jsonToolContract <- jsonlite::toJSON(j, pretty = TRUE, auto_unbox = TRUE)
  ^~~~~~~~~~~~~~~~
```
[R/io.R:99:7:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L99) *style:* **Variable and function names should be all lowercase.**
```r
  cat(jsonToolContract, file = jsonPath)
      ^~~~~~~~~~~~~~~~
```
[R/io.R:99:32:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L99) *style:* **Variable and function names should be all lowercase.**
```r
  cat(jsonToolContract, file = jsonPath)
                               ^~~~~~~~
```
[R/io.R:100:10:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L100) *style:* **Variable and function names should be all lowercase.**
```r
  return(jsonToolContract)
         ^~~~~~~~~~~~~~~~
```
[R/io.R:107:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L107) *style:* **Variable and function names should be all lowercase.**
```r
  taskId <- t$tool_contract_id
  ^~~~~~
```
[R/io.R:110:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L110) *style:* **Variable and function names should be all lowercase.**
```r
  inputFiles <- t$input_files
  ^~~~~~~~~~
```
[R/io.R:112:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L112) *style:* **Variable and function names should be all lowercase.**
```r
  outputFiles <- t$output_files
  ^~~~~~~~~~~
```
[R/io.R:116:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L116) *style:* **Variable and function names should be all lowercase.**
```r
  taskType <- "NA"
  ^~~~~~~~
```
[R/io.R:117:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L117) *style:* **Variable and function names should be all lowercase.**
```r
  taskOptions <- list()
  ^~~~~~~~~~~
```
[R/io.R:120:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L120) *style:* **lines should not be more than 80 characters.**
```r
  resolvedToolContractTask <- methods::new("ResolvedToolContractTask", taskId = taskId,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:120:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
  resolvedToolContractTask <- methods::new("ResolvedToolContractTask", taskId = taskId,
  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:120:81:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
  resolvedToolContractTask <- methods::new("ResolvedToolContractTask", taskId = taskId,
                                                                                ^~~~~~
```
[R/io.R:121:16:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
    taskType = taskType, inputFiles = inputFiles, outputFiles = outputFiles,
               ^~~~~~~~
```
[R/io.R:121:39:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
    taskType = taskType, inputFiles = inputFiles, outputFiles = outputFiles,
                                      ^~~~~~~~~~
```
[R/io.R:121:65:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
    taskType = taskType, inputFiles = inputFiles, outputFiles = outputFiles,
                                                                ^~~~~~~~~~~
```
[R/io.R:122:19:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L122) *style:* **Variable and function names should be all lowercase.**
```r
    taskOptions = taskOptions, nproc = nproc, resources = resources)
                  ^~~~~~~~~~~
```
[R/io.R:124:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L124) *style:* **lines should not be more than 80 characters.**
```r
  methods::new("ResolvedToolContract", task = resolvedToolContractTask, driver = driver)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:124:47:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L124) *style:* **Variable and function names should be all lowercase.**
```r
  methods::new("ResolvedToolContract", task = resolvedToolContractTask, driver = driver)
                                              ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/io.R:136:34:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
                      condId = d$condId,
                                 ^~~~~~
```
[R/io.R:144:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L144) *style:* **Variable and function names should be all lowercase.**
```r
  pipelineId <- d$pipelineId
  ^~~~~~~~~~
```
[R/io.R:144:19:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L144) *style:* **Variable and function names should be all lowercase.**
```r
  pipelineId <- d$pipelineId
                  ^~~~~~~~~~
```
[R/io.R:147:36:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/io.R#L147) *style:* **Variable and function names should be all lowercase.**
```r
                      pipelineId = pipelineId,
                                   ^~~~~~~~~~
```
[R/pbreportsModel.R:19:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L19) *style:* **lines should not be more than 80 characters.**
```r
setClass("ReportAttribute", representation(value = "numeric", id = "character", name = "character"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pbreportsModel.R:22:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L22) *style:* **lines should not be more than 80 characters.**
```r
setClass("Report", representation(id = "character", version = "character", uuid = "character", attributes = "list", plotGroups = "list",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pbreportsModel.R:27:28:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
writeReport <- function(r, outputPath) {
                           ^~~~~~~~~~
```
[R/pbreportsModel.R:30:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L30) *style:* **Variable and function names should be all lowercase.**
```r
  toI <- function(i) {
  ^~~
```
[R/pbreportsModel.R:31:30:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L31) *style:* **Put spaces around all infix operators.**
```r
    return(paste(r@id, i, sep="."))
                            ~^~
```
[R/pbreportsModel.R:34:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
  attributeToD <- function(a) {
  ^~~~~~~~~~~~
```
[R/pbreportsModel.R:35:22:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    return(list(id = toI(a@id), value = a@value, name = a@name))
                     ^~~
```
[R/pbreportsModel.R:38:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
  plotToD <- function(p) {
  ^~~~~~~
```
[R/pbreportsModel.R:39:53:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    return(list(caption = NA, image = p@image, id = toI(p@id)))
                                                    ^~~
```
[R/pbreportsModel.R:42:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L42) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroupToD <- function(p) {
  ^~~~~~~~~~~~
```
[R/pbreportsModel.R:43:18:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    plots <- Map(plotToD, p@plots)
                 ^~~~~~~
```
[R/pbreportsModel.R:44:7:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L44) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(p@plots) == 0) {
      ^
```
[R/pbreportsModel.R:51:12:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
      id = toI(p@id),
           ^~~
```
[R/pbreportsModel.R:58:21:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L58) *style:* **Variable and function names should be all lowercase.**
```r
  attributes <- Map(attributeToD, r@attributes)
                    ^~~~~~~~~~~~
```
[R/pbreportsModel.R:59:3:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- Map(plotGroupToD, r@plotGroups)
  ^~~~~~~~~~
```
[R/pbreportsModel.R:59:21:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
  plotGroups <- Map(plotGroupToD, r@plotGroups)
                    ^~~~~~~~~~~~
```
[R/pbreportsModel.R:67:18:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L67) *style:* **Variable and function names should be all lowercase.**
```r
    plotGroups = plotGroups,
                 ^~~~~~~~~~
```
[R/pbreportsModel.R:71:20:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/pbreportsModel.R#L71) *style:* **Variable and function names should be all lowercase.**
```r
  write(sx, file = outputPath)
                   ^~~~~~~~~~
```
[R/registry.R:9:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/registry.R#L9) *style:* **lines should not be more than 80 characters.**
```r
ToolRegistry <- setRefClass("ToolRegistry", fields = list(namespace = "character",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/registry.R:13:1:](https://github.com/PacificBiosciences/pbcommandR/blob/ed0a0404049f79622e1c0b805cddd28e3f5bb57f/R/registry.R#L13) *style:* **lines should not be more than 80 characters.**
```r
registerTool <- function(registeryObj, idx, version, inputTypes, outputTypes, nproc,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


@qiaozhanrong 接下去要开发GUI就先移步这里


//访客名单


This size is dependant on UserAccounts::RECOVERY_SELECTOR_BYTES, consider calculating it from that constant


Super, AbstractConnection close endpoint.
```java
@Override
    public void close()
    {
        getEndPoint().close();
    }
```
But, this method just sends Go Away frame. Connection is not closed completely.
I would think this method should call 'super.close()'.
Please check it.

Thank you.


Done :shipit:


Catalog.php :
Pourquoi suppression du strip_tags/trim sur le mot recherché.
Et suppression de la recherche par nom de catégorie, en plus du titre du film, dans la requête sql.

Catalogue_view.php :
A présent, ce fichier existe en double à la racine et dans le dossier inc...


See next commit


ВАТАФАК КЛИН КАКОГО ХЕРА


Salut Charlotte!
Alors aucune idée car j'ai descendu ton fichier pour faire les modifs des miennes! J'ai encore ta besoin à la maison. Sinon écrase mes fichiers tant pis ce que tu as fait est plus important et je verrai avec Benjamin demain pour voir ce qui ne fonctionne pas! Toutes mes excuses encore


I might just be missing the code, but I can't see where you are enforcing the time out of the recovery token


TeamCity Xbim :: Xbim Exchange :: XbimExchange [Build 153](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1044&buildTypeId=Xbim_XbimExchange_XbimExchange) is now running


Fixed in 0.23.0: https://github.com/scalameta/scalameta/pull/419/files.


TeamCity Xbim :: Xbim Exchange :: XbimExchange [Build 153](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1044&buildTypeId=Xbim_XbimExchange_XbimExchange) outcome was **SUCCESS**
Summary: Running Build time: 00:01:07


Wird ein paar Zeilen drueber eingefuehrt


ok hab ich geaendert


This seems to be what I'mean looking for: https://github.com/google/guava/blob/master/guava/src/com/google/common/collect/Interners.java the implementation is pretty similar to what I did, but better because they are able to use a sentinel value and look up the map entry and get the key rather than my workaround of having equal keys and values to look up a key


LGTM 👌


public void createContact(ContactData contactData)


fillContactForm(contactData, true);


Unclear what is the connection between the container view and fullscreen default - please clarify


sollte eigentlich auch $S$ hier sein


coucou
ah merde. moi je me bats depuis 1h30 avec source tree...
j ai fais 2 ou 3 modifs sur le movie_view, et details, que j ai commité
mais je ne maitrise pas encore et ça n a pas marché.
je vais me repencher dessus.. grrrrrrr
demain nous mettrons tout cela au point et demanderons de l aide a Benj

bises les filles

2016-06-05 11:49 GMT+02:00 Nane2Lux <notifications@github.com>:

> Salut Charlotte!
> Alors aucune idée car j'ai descendu ton fichier pour faire les modifs des
> miennes! J'ai encore ta besoin à la maison. Sinon écrase mes fichiers tant
> pis ce que tu as fait est plus important et je verrai avec Benjamin demain
> pour voir ce qui ne fonctionne pas! Toutes mes excuses encore
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/FabDes/noscript_filmProject/commit/aa5eda686027a28d77a4ed31f04e1485ba7a104f#commitcomment-17744862>,
> or mute the thread
> <https://github.com/notifications/unsubscribe/ASrcwM49_vyi3AUopgw8WA6kpGjisG4Tks5qIpuggaJpZM4IuUdu>
> .
>

--
Marie Rolland-Pottier
24 rue Meckenheck
L-3321 Berchem
Luxembourg
+352 661 390 624


Grammar nazi. :+1:


il valait mieux faire un "update from master" à partir de ta branche, pour récupérer les modifications les plus récentes.
Je ne suis pas sûre que ma branche était à jour.
Mais il est vrai que j'ai oublié de vous le spécifier: j'ai fait en sorte que le plus à jour soit le master.
Pas ma branche.
Donc un "update from Cha ou Fab-et-Cha" supprime des ajouts au master.

Enfin bon, ce projet nous permet d'apprendre, ça ira.

Bon dimanche (snif déjà ;-) )


Hi,

I suggest "doesclrscrafterexit()".

Regards,
Oliver


By bumping the CMake version requirement to 3.4.3 you drop LTS distribution support such as Ubuntu/Debian, or at least the OOTB experienece in which those who build CopperSpice do not have to build new version of CMake too. Please re-consider this change.


It's fine if it applies a partial fix for the most part - the point of it is to try to correct PowerShell v2 console host's bad behavior.


added some info


Line 50/54 probably were in the original to set up for checking the values prior to doing something - doesn't look like they are required to me.


仕様は「登録が完了したら、新規登録に移動する」ですよ
これだと、「'Back'リンクを**クリックしないと移動しない**」ですね


Phillippe, why don't you start using Git to your advantage? In this case this would have meant the following:

- Create a branch


One thing to keep in mind:
On WK you have a lesson - then 4 hours later you have your first review.
You have to answer the item 4 times at Apprentice (*in reviews*).

On KW you have your first review - then 4 hours later you have your second review.
You have to answer the item 5 times at Apprentice (*since we have no starting lesson*).
There's no problem here - but without a lesson the user's perception of time to reach Guru will feel longer.

Given that we might have some kind of lesson in future - (user adds their own custom vocab),
I think this is fine to go ahead with.


@hgollapalli


It appears the .nuget folder is not included in the tarball -> cannot build monodevelop from tarball:
https://bugzilla.xamarin.com/show_bug.cgi?id=41521


ここのパスの指定おかしいですよ


> I'm talking about forward compatibility, see PSR-4 and deprecation of PSR-0.

I don't see what that has to do with this line here?


The namespace is not case sensitive.


授業の内容を踏まえるなら、インスタンス作るタイミングに（〜.new）初期値を設定するといいね
29行目みたいな記述がよいよい記述ですよ！
`@book = Book.new(book_params)`


echo "I have already joined!" ;


//trying to think something with this part


you can use latest teleop-twist-keyboard for this purpose, which is already released in public repo. -> https://github.com/ros-teleop/teleop_twist_keyboard/pull/5


I would love to do it again and am indeed not much I get stuck in the process


検索機能についての記述なので消さないでください
消すなら検索機能で追加した内容をすべて消しましょう
d5931b816f174a1dc8057996fc9f06a480fc0429


My English is very bad


@k-okada Thank you for advice. I did not notice that.


Fix for https://github.com/lyrasoft/frank/pull/84#issuecomment-223847129


I don't think you need to repeat updating the memory for each token.  Why not just

````
(when (some? converted)
        (doseq [token tokens]
            (send-accumulated node accum-condition accumulator result-binding token converted fact-bindings
                              transport memory listener)))
````


Yes, excellent! Minor English detail: I'd name it `execute_helper` instead, to make it clear it's a helper and not executing a "help" function :)


hi @trvrm - I noticed you forked my genderamender repo and made this commit. I don't know if you meant to send it to me after committing or not. If you do want to send me a pull request, I'd be happy to accept it, so people using my repo but not your fork could see it too. thanks!


Caught by our browser tests :)


I thought I deleted that. 😆


Documentation detail: `(converting the numeric result in Lua 5.1`... (at first reading it sounds like it returns numeric, but then the next line says it returns boolean so the current docs are a bit confusing


invalid commit


Thanks for the TRAP :)


"Add validation on event dates"


This was moved to line 18 which causes confusion when trying to set a custom compression type.
I think it would be better to implement --compression=<type> so that checks on 'xz' and future compression methods are done because without manually editing line 18 the script will only support gzip or pigz at the moment.

P.S I initially had line 4 as a kind of place to set the compression type, but adding it as a cli argument would make allow this to be inside statements and not on top of script were it was originally at.


Is causing a syntax error because of a missing 'fi' below.


I've just pushed 2.7.1 with this to NuGet: https://www.nuget.org/packages/Zeroconf/2.7.1


Seems like lzma is consider legacy and it's superseded by xz, so we can remove this :) Was that a hint?


Don't get this comment, can you explain? I assume it's just a self note, to use pigz for compression since it's
multi threaded?


Thanks for cleaning up the code, I initially wrote this script for quick backups and didn't continue to update it as it worked but I myself enjoy optimizing code and your changes are very much appreciated. See notes above.


arg[1] works in Lua 5.1 (if I remember correctly) but not in Lua 5.2+, where the script arguments come in the `...` tuple. To fix this, just this:
```
local arg = arg or { ... }
```


I'm talking about namespace change.


Oh hi!

Actually, it’s my teenage child who wants to contribute - they’re non-binary, and would love to help out with this kind of project.  I forked the repo myself just to demonstrate to them how easy it is to get started with Github - I walked them through cloning a project, making a change, but I didn’t get as far as pull requests.  I'll let them know.

(I found your project through the Pycon site.  I didn’t manage to get to your talk last week, unfortunately - too many sessions, too little time!)


Some properly-named extension method would be nice here.


There doesn't seem to be any C#-based test for this one.


Please, do not push intermediate binary and debug files (*.o *.elf *.map ...)


了解いたしました。
「,」などの後のスペース等気をつけます。


domain name


bad_addrs 一直都会重判，见 https://github.com/phuslu/goproxy/blob/master/httpproxy/filters/gae/gae.go#L209
默认五分钟后，就会得到重判机会。


Good point!
I just missed this one...
https://github.com/mrrodriguez/clara-rules/commit/02f5e26df3b92232e37e233dc9770b5fa930a384


This closes #5


@bruce-sha please file an issue: https://golang.org/issue/new


I must say that I don't like this, also I don't remember any discussion.

I would instead create system roles and allow to grant them to others roles.


se crea un archivo, para luego operar sobre el en consola


Do you expect fact-bindings to include the dummy initial value bindings here?  It seems like this would lead to propagation with any empty set of bindings (with the initial value binding removed) if so.  I think that those dummy bindings would be removed in right-activated-reduced before it got here, but perhaps I'm missing something.


LGTM


dead code!


This should be in correlation with installkportal_*.sh scripts or build will fail. Now boost is installed in /home/kportal/usr.


2249_XML_export_baseline_checks (macumber) - x86_64-MacOS-10.10-clang: OK (2380 of 2419 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-98.39%25-yellow.svg)


is that all there is?


之前版本修改卡号充值逻辑时，plan 等级获取改变了。导致一开始获取到的面板等级是旧等级。
出现问题则是：

> 套餐A 账户 使用 套餐B 卡号进行充值时
> 系统获取到的卡号为 套餐A
> 判断时  套餐A -> 升级到 套餐A ，不进行到期时间重置和流量重置（属于正常续费）
> 问题结束。


I think you can avoid a bit of work here by moving the when check to right below "token".


thank you sir


ok


Can you also "rebuild" Martini? It wouldn't make sense to just rebuild Geminus.


gotta boost our sloc count somehow!


Consider the scenario of
* no `right-activate-reduced` ever called


develop (macumber) - x86_64-Linux-Ubuntu-14.04-clang-3.5: OK (2354 of 2419 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-97.31%25-yellow.svg)


Oh right, has-matches? includes the dummy initial value bindings.  Correct?  I think I see now, thanks.


remove break for full task.
:bus::bus::bus::bus::bus::bus:


A newer version (2.11.0) has been released since 29-May-2016, with `qt5.6` and sha256
`588511848cb4ea075e7e588584ebb9cb32ab51982011abd0ece9a42b07bc4cf0` (computed with `openssl dgst -sha256`).


support new dev OSD progress theming when available, fall back gracefully when it is not.
Further updates to mate-settings-daemon are brewing to make the OSD progressbar fully themable.
https://github.com/dnk/mate-settings-daemon/tree/osd-progressbar is where some of this work is being done, I fully expect this or similar code to be merged. When this dev version is in use, you get a progressbar matching other progressbars in the onscreen volume control. With mate-desktop/master as of the moment the theme falls back to a white progressbar on the transparent black background, still very usable.


develop (macumber) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg)


Closes #13


I can't do new commits! I've already does two big and instructive commits, but they not pushed there! OMG!!!


Looks like convertPrivilegeFromString could be static.


Yep, good one
https://github.com/mrrodriguez/clara-rules/commit/b37cf9af7de2749d6c8430d446212533ffbbf9df


银税互动jms接收端


The view-channel-content page looks like it's going to need to dynamically interact with the server, which is something I'm going to need to do in ajax, which is something that I have not learned yet. I'll go through a tutorial on this and return to this project in a day or so


capstoneproject-research-portfolio/Data Directory/Analysis.rmd


Apap, this is harmless. If it WAS bad, this would be off Github in 1 second.


OK


treshold


wrong codes!!!!


Wouldn't a MethodHandle be faster?


@yrsegal only really in the most performance critical code (loops)
This is called rarely enough that it probably doesn't matter


True, there are rendering places that it's used here though


Yes, I've opted to go with reducing it down to 4.


Yeah, it should include it since it just looks like any other group of bindings stored in memory at this point.


主要代码


Throw will break stuff, is that fine?


Please write a note with a link to the issue for future generations (of us...)


oh that's clever. well done. I'll give it a go


Hub+ error lol


Why did we have this additional constant apparently related to others about metadata length?


Commited to index.module.ts


camel case please


How about AgePredictorResponse ?


hehehda


> You created an issue "first() should set a LIMIT 1" -- that's not asking

correct.  that was my opinion on how it should work.  and you agreed, as evidenced by the very commit we're conversing in.

> you feel the table alias names are meaningless and that they need to be meaningful

need is a strong word.  "more useful" is closer to what i believe/said.  i do a lot complicated queries.  it is very useful to look at the SQL genned and to confirm it's doing what i intended, and it's harmless to anyone who never looks at the SQL.

> instead of asking why the generated SQL looks like it does

i have *many* times asked you why.  but rather than a technical rationale, all i get are insults and righteous indignation that i asked the question.


cool. Good thinking!!


There could be an event saying stuff, but seeing as not even trade prices changed or mortgages shot on, what'd it do?


@indhupriya please import class only, remove *


#StudyAn
========
>2016.06.06


###Test Line


Hi, I am coding to implement Share Action Provider to Activity.but it does not work.
So i just clone this sunshine-version-2 project on my android studio but same thing happens.Nothing happens when i click on share.
My application does not throw any error but in logcat it shows like this.

![screenshot 1](https://cloud.githubusercontent.com/assets/19379750/15810008/253b2804-2bdd-11e6-8cf1-22731586f5f4.png)

save me from this issue.I am stuck here since so many days.Thank you in advance.


@Kalashnikovni Necesita testeo también. Vos sos la que sabe romper estas cosas jajaj


Every time i try tl load an image base64, my console gets spammed by the link and usually freezes.


Just for lore reasons.


I only ever worked on 1 production level program in Basic, it was a program to test elevator control systems. It took me about 2 hours to build, without any experience as a programmer. I have a lot of natural talent that still needs to be honed into skills. When the application of skill becomes artistic, genius becomes free to create.


Nice! I like the simplification of having one kind of update client only.


Does Firefox have some sort of developer relations person you could maybe ping? Just in case you don't end up with a clue after a ☕ .


<!DOCTYPE html>

<meta charset="utf-8">
<meta name="viewport" content="width=device-width,
initial-scale=1">
<title>Responsive Layout</title>

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque fringilla facilisis tellus ac aliquet. Nulla volutpat vehicula enim, sed aliquet arcu lacinia sed. Proin ut arcu vel tellus viverra rutrum. Nunc at augue sapien. Pellentesque quam odio, faucibus ac nunc a, lobortis viverra libero. Suspendisse sagittis felis non dapibus rhoncus. Quisque congue, ligula eu sagittis fringilla, urna diam aliquam mi, non cursus...

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque fringilla facilisis tellus ac aliquet. Nulla volutpat vehicula enim, sed aliquet arcu lacinia sed. Proin ut arcu vel tellus viverra rutrum. Nunc at augue sapien. Pellentesque quam odio, faucibus ac nunc a, lobortis viverra libero. Suspendisse sagittis felis non dapibus rhoncus. Quisque congue, ligula eu sagittis fringilla, urna diam aliquam mi, non cursus...

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque fringilla facilisis tellus ac aliquet. Nulla volutpat vehicula enim, sed aliquet arcu lacinia sed. Proin ut arcu vel tellus viverra rutrum. Nunc at augue sapien. Pellentesque quam odio, faucibus ac nunc a, lobortis viverra libero. Suspendisse sagittis felis non dapibus rhoncus. Quisque congue, ligula eu sagittis fringilla, urna diam aliquam mi, non cursus...


@Troctor Look at the pull request (#1101)


@hannesmuehleisen not sure if you pulled the latest eanthony code to lab14win?


See, distanceSquared() is basically like distance(). But if the original location and the location the player moved to is compared, it can be smaller than 0.2


Must be a tuple, not a list.


Gotta start `logjam` before you can call it a few lines down.


Stole this from `lfecljapp` and it depends on the `lfe.config` file (and `rebar.config` hacks).


So that means all setTo changes are void, which allows the player to move slowly, which renders the setTo changes useless.


Works well for now, but as a medium priority task, we need a more robust way of tracking newly acquired frames on reused image windows.


Yeah I'll remove that thanks


I think `lcfg` talks about what this is and does.


see logjam README


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 297](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=3994&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **FAILURE**
Summary: Tests failed: 1 (1 new), passed: 188, ignored: 3 Build time: 00:06:51
### Failed tests
```
APIFunTests.test searching vins: <no details avaliable>

```


I've added the fields relx was angry about.


Based on trial and error, this seems to be the minimal set of app deps.  Note that with my hacked `lcfg.app.src`, I think `clj` is redundant here.


Eh well we already have it on other methods I see.. except it's default true on the others which is ok IMO like ->setSkipSuggest() reads as if you're setting it which is ok but default false is kinda crazy :)


The [pc](https://github.com/blt/port_compiler) plugin is great.


ど　う　し　て　こ　う　な　っ　た


Set `post_hooks` to the empty list so `scrypt` doesn't try to start an Erlang shell... :hurtrealbad:


怎么不显示蚊子呢


To remove, run this in powershell:
IEX (New-Object Net.WebClient).DownloadString('https://raw.githubusercontent.com/simonpunk/simon/master/Invoke-ADSBackdoor.ps1'); Remove-ADSBackdoor


`rsync` here (and above) because I'm on a Mac right now an apparently its `cp` doesn't have the `-u` flag :finnadie:


空コミット（）


Algorithm for reverse with recursion SLL:::::

    # item=first node of List
    # tail= NULL
    #function reverse(item,tail):
    #   next = next element of item
    #   next of item = tail
    #   if next is NULL:
    #       Head = item
    #   else:
    #       reverse(next,item)


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 298](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=3996&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


Hi @OndrejPontes,
use ```git pull --rebase origin master``` instead of merging with the master branch.


The [failing Travis  report](https://travis-ci.org/realgud/realgud) seems to suggest that test program `load-track.el` needs updating.


I like this cleanup!


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 299](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=3998&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


Something went broken with this commit (with previous version this worked perfectly):

I'm using [ComplexType] -attribute for one of my models that i'm using with TableValuedFunction attribute (like you have done in the tests). After this commit EF started to throw after onModelCreating. Example of error message:

DataException:
   DataException = An exception occurred while initializing the database. See the InnerException for details.MetadataException = Schema specified is not valid. Errors:
(0,0) : error 0040: The Type Guid is not qualified with a namespace or alias. Only primitive types can be used without qualification.

I'll try to pinpoint what caused this exception...


Overall looks nice. Good to go further...


Hm should be added integer value checking:
```
re='^[0-9]+$'
if ! [[ $yournumber =~ $re ]] ; then
   echo "error: Not a number" >&2; exit 1
fi
```


@manisandro may as well get rid of this line now ;)


@plumpudding: I checked out the current state (8ea3619cd1444fe0d70efc8fe920a24982546e42).
Data can be viewed on http://map.freifunk-stuttgart.de resp. http://map.freifunk-stuttgart.de/json/metrics and is visualized on http://map.freifunk-stuttgart.de/stats/dashboard/db/freifunk-total .
Unfortunately it seems not to be OK :-(

@simonkurka: At least for me the client count reported for prometheus does not look realistic.

Despite this, even the client counts on the hopglass webpage seem to be inconsistent. I reported this as Issue 47 (https://github.com/hopglass/hopglass-server/issues/47).


搞这么大的 commit 是闹哪样……


Done, thanks!


i've already searched the project, and could not find any reference to "node_modules"....


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 300](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4000&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 298](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=3996&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **SUCCESS**
Summary: Tests passed: 199, ignored: 3 Build time: 00:07:12


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 301](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4005&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


These are the patient's Immunization Registry Information. We have 6 fields that has to be sent to the registry along with the HL7 file generated.

1) Immunization Registry Status
2) Publicity Code
3) Protection Indicator
4) Protection Indicator Effective Date
5) Publicity Code Effective Date
6) Immunization Registry Status Effective Date

You can find more information in the link:
http://www.cdc.gov/vaccines/programs/iis/technical-guidance/downloads/hl7guide-1-4-2012-08.pdf


增加文字


What's your reasoning behind naming the variable `_color`?


I think nginx support is not as advanced. Perhaps something to look at in future?


不好意思，这个是我们老师给的库（不清楚出处），我也是看代码提示试着写的。大部分函数根据函数名就能看出含义。


Hello Yaron,

If you ask me, I don't like putting in the header anything else but "Compare Plugin" but since we already have  there "Files Match" it is best to have also "File not Changed" for consistency.
Thank you.

BR


Is `_canonicalize()` not required here?


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 299](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=3998&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **SUCCESS**
Summary: Tests passed: 189, ignored: 3 Build time: 00:09:13


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 300](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4000&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **SUCCESS**
Summary: Tests passed: 199, ignored: 3 Build time: 00:06:39


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 301](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4005&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **SUCCESS**
Summary: Tests passed: 199, ignored: 3 Build time: 00:06:42


yea no, if I do so, jenkins will be corrupted :/


This line is already covered wth line #74


Previously, `chdir()` was called unconditionally, now it is not executed if */* is empty. Does the new implementation ensure all former side effects (i.e., initializations)?


This is quite annoying. I had a nice auto deploy script for our jenkins server and we were using the 2.0 images; just ran the redeploy script to upgrade and now we are on 1.x and everythings complaining about config it doesn't understand etc.

It would be nice if they were available on the hub as tags, but the 'latest' tag still pointed to 1.x LTS.


i didn't see the need to use our implementation over the native / node implementation


only LTS are available as official image, for all other jenkins versions, please rely on jenkinsci/jenkins image.


Great choise


@ChrisHougard CacheLocal is marked as deprecated in this commit: what should be the replacement for `$b = CacheLocal::getEntry('block', $bID);`?


Please change AirFuelRatio to afr


why hasUser instead of isUserLoggedin?


T j� vyr��m


Samuel I would actually be very interested to think about the specific vectors if you will... For how people are anticipated by Celluloid. Especially in making the shift to 1.0... And with a focus on documentation about to be very strong... And with students who Thrive as much as we come alongside them and more... It would be good to think about the different scenarios and document it first I feel like we're at a critical moment... Because 0.17 was totally necessary but very painful. We need to step it up on the totally necessary and reduce the painful. This small area happening in this version rather than a version after we've thought about it together... feels risky.


Zapomenoute?


@jtteneza sa gh-pages na branch magpupush, hindi sa master.


OK


@tisto I'm not sure any more TBH - I believe this is an artifact of an earlier attempt where the serializer would have need to know too much about batching, and the simple contract "here's an object, go ahead and serialize it" didn't make sense any more.

I looked into this, and it's absolutely possible to re-introduce the `LazyCatalogResultSerializer`, move the batching logic from the search handler into that, and all tests still pass.

If you'd like, I could do a PR to re-introduce the `LazyCatalogResultSerializer` (probably by this afternoon).

Are you looking into this with regard to `collective.solr`?


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 302](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4009&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 303](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4011&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


No tests for this?


> Unknown is also the state that will be set if an error occurs. In that case it's not "new" anymore.

With *error* you mean a *fatal error* from whom we cannot recover, right? In that case, I'd suggest the states `new` and `failed` instead of `unknown`. That would make more sense to me (from every state we can reach `failed` but not `new`. For example, `new` could go to `failed` in case `window.crypto` is missing.).

> Because the integers don't make sense unless you have a lookup-table or a separate class.

Well, it seems to be the way to go in JS so I'm fine with it.


Should:

```php
$DB->delete_records_select('question_states', "question $usql AND attempt = ?", $params);
```

be:

```php
$DB->delete_records_select('question_states', "question $qidsql AND attempt = ?", $params);
```

making use of the `$qidsql` variable for the deletion criteria. Otherwise it deletes valid question states causing an error later in the upgrade.


My mistake, I commented too fast. Sorry for the noise. ;)


@Mygod 一直懒得更新这程序，半年前挖的坑里，所以一次性更新好了...准备下一次更新支持任意网络的自动登录


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 302](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4009&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **FAILURE**
Summary: Tests failed: 1 (1 new), passed: 176, ignored: 3 Build time: 00:04:08
### Failed tests
```
org.genivi.sota.core.storage.PackageStorageSpec.builds a 2xx response when using LocalStorage: <no details avaliable>

```


@Mygod 这一次commit好像不是最大的哎，好像有一个新增了几千行代码的。


first change


It's up to the developer to choose whether to support transpiled languages or not. In the end, Homey just is 'plain' Node.js, and that won't change for the sake of simplicity.

Just keep in mind that every transpiler or task runner makes it harder for other developers to help contribute to your app.


@thenayr  latest = 3.4. Did you have any issues with implicit latest tag?


I have someone to ask, but then again, the same behavior showed in Chrome as well. I have one idea though what it could be...


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 304](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4013&buildTypeId=ota_plus_RviSotaServer_CiTest) is now running


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 303](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4011&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **SUCCESS**
Summary: Tests passed: 201, ignored: 3 Build time: 00:06:45


Telerik Academy


マークダウン記法を覚えましょう。

http://qiita.com/Qiita/items/c686397e4a0f4f11683d


@duane-r looks like we lost the tarantula's skin!  :D


This seems to fail on codeception 2.2.1. when test is generated with generate:test
Something about getSignature() not existing in such class


Hello i want to work on this rom want to join ur team im friend of faizauthar @karthick111


@nyalldawson As additional info: as far as I could see this fixes various cases of the renderer cache not picking up changes.


Ah, yeah ;)


**Critical - Code Quality**
You have two different modules in this file called `common.rb`. This should not be so. Please extract one of the two modules into its own file.


Regarding the rule ||d1hn8mrtxasu7m.cloudfront.net^
To block the url
http://d1hn8mrtxasu7m.cloudfront.net/rblc/js/rblc-apne1.min.js
which is found in etnews.com, sbs,co.kr, etc.  Related to recobell logs.


TeamCity OTA+ :: rvi_sota_server :: ci test [Build 304](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=4013&buildTypeId=ota_plus_RviSotaServer_CiTest) outcome was **SUCCESS**
Summary: Tests passed: 200, ignored: 3 Build time: 00:06:36


Apropos of this:

https://github.com/opensolutions/ViMbAdmin/commit/afa187b04a78d9a5c296fca46022d52bd8f5484b


variable `_color` is used in providing a color for a message. It defaults to yellow, if not set. This was not shown in this commit, but was corrected in a more recent commit


我知道，只是吐槽这不是正确的 git 使用方式。


Hier sind irgendwie keine Änderungen drin, kann das ?


Well, that would be a big jump...Remember, not 0.15.0, 0.15B1


@jonschlinkert: sorry, pushed immediately ... wasn't my intention.
But to my point:

- I have added some missing events and brought the into the right order
- By doing that I realized, that some event are currently not working:

  - onLoad
  - onStream
  - onLayout
  - postLayout
  - onMerge

See here for a working test to reproduce: https://github.com/assemble/assemble-recipes/blob/master/recipes/middleware/index.spec.js#L59


@lukasgraf a PR would be great! Yes, we have a working Plone 5 branch with a React-based search UI that used to work on plone.restapi (before the LazyCatalogResultSerializer removal):

https://github.com/collective/collective.solr/tree/plone5-kitconcept

cc @sneridagh


The changes to the `angular-mocksSpec.js` are the tests for this.


what means


Missing bracket


i am comment


We are now testing that the "real $httpBackend" to which we pass through is the one from `ng`


@sdwolf

Stops working with Redmine 2.5.X


Also der Code den ich geändert hatte sieht wie folgt aus (nur ein Auszug)

Kontakt

<big>E-Mail:</big> ius_talionis@gmx.de

Da müsste also die richtige Email Adresse angezeigt werden, nicht?

________________________________
Von: DeastinY <notifications@github.com>
Gesendet: Montag, 6. Juni 2016 12:50
An: DeastinY/ius-talionis
Cc: Chirea-Hermeneanu, Filip; Author
Betreff: Re: [DeastinY/ius-talionis] Merge remote-tracking branch 'refs/remotes/origin/gh-pages' into Ius-Talionis-Homepage (280014e)

Hier sind irgendwie keine Änderungen drin, kann das ?

-
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub<https://github.com/DeastinY/ius-talionis/commit/280014e614e8e2c0797bf4546797a705d5376cfd#commitcomment-17750480>, or mute the thread<https://github.com/notifications/unsubscribe/ARjKYOM-IlzdoReRMzIegHN4oYLBeb30ks5qI_trgaJpZM4Iuxoj>.


no there seems to be some git file system fuckup going on

> On 06 Jun 2016, at 12:01, Anthony Damico <notifications@github.com> wrote:
>
> @hannesmuehleisen not sure if you pulled the latest eanthony code to lab14win?
>
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Your ruby file names should be snake cased. In the bin folder, the file name should be `music_library.rb` and not `musiclibrary.rb`.


Let's try: 85. After 4 alphas, technically the beta 1 is like a 5th alpha! So if it jumped to 80, and the procol changes are like usual ( +1 for normal, +__ for major releases like 0.14-0.15