[inst/site/direct_optimizer_test.R:17:15:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L17) *warning:* **no visible binding for global variable ‘train_labels’**
```r
  m <- length(train_labels)
              ^~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:18:22:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L18) *warning:* **no visible binding for global variable ‘train_labels’**
```r
  c <- length(unique(train_labels))
                     ^~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:20:12:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L20) *warning:* **no visible global function definition for ‘cvFolds’**
```r
  folds <- cvFolds(m, K = nfolds, type = "random")
           ^~~~~~~
```
[inst/site/direct_optimizer_test.R:20:27:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L20) *warning:* **no visible binding for global variable ‘nfolds’, Did you mean 'folds'?**
```r
  folds <- cvFolds(m, K = nfolds, type = "random")
                          ^~~~~~
```
[inst/site/direct_optimizer_test.R:28:32:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L28) *warning:* **no visible binding for global variable ‘train_labels’**
```r
    bags <- plyr::alply(unique(train_labels), 1, function(x){x})
                               ^~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:28:61:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L28) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    bags <- plyr::alply(unique(train_labels), 1, function(x){x})
                                                            ^
```
[inst/site/direct_optimizer_test.R:28:63:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L28) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    bags <- plyr::alply(unique(train_labels), 1, function(x){x})
                                                              ^
```
[inst/site/direct_optimizer_test.R:30:19:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L30) *warning:* **no visible binding for global variable ‘train_labels’**
```r
      ll <- which(train_labels[set_train] == unique(train_labels)[j])
                  ^~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:30:19:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L30) *warning:* **no visible binding for global variable ‘train_labels’**
```r
      ll <- which(train_labels[set_train] == unique(train_labels)[j])
                  ^~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:32:71:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L32) *style:* **Commas should always have a space after.**
```r
                  manyseries_to_wordbag( (train_data[set_train, ])[ll,], w, p, a, "exact", 0.01)
                                                                      ^
```
[inst/site/direct_optimizer_test.R:37:20:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L37) *warning:* **no visible binding for global variable ‘train_labels’**
```r
    labels_test <- train_labels[set_test]
                   ^~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:38:18:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L38) *warning:* **no visible binding for global variable ‘train_data’**
```r
    data_test <- train_data[set_test, ]
                 ^~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:43:16:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L43) *warning:* **no visible global function definition for ‘series_to_wordbag’**
```r
        bag <- series_to_wordbag(data_test[j, ], w, p, a, "exact", 0.01)
               ^~~~~~~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:45:16:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L45) *warning:* **no visible global function definition for ‘series_to_wordbag’**
```r
        bag <- series_to_wordbag(data_test, w, p, a, "exact", 0.01)
               ^~~~~~~~~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:47:18:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L47) *warning:* **no visible global function definition for ‘cosine_sim’**
```r
      cosines <- cosine_sim(list("bag" = bag, "tfidf" = tfidf))
                 ^~~~~~~~~~
```
[inst/site/direct_optimizer_test.R:55:27:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L55) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    error <- length(which((labels_test != labels_predicted))) / length(labels_test)
                          ^
```
[inst/site/direct_optimizer_test.R:60:15:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L60) *warning:* **no visible global function definition for ‘laply’, Did you mean 'lapply'?**
```r
  err <- mean(laply(errors,function(x){x}))
              ^~~~~
```
[inst/site/direct_optimizer_test.R:60:28:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L60) *style:* **Commas should always have a space after.**
```r
  err <- mean(laply(errors,function(x){x}))
                           ^
```
[inst/site/direct_optimizer_test.R:60:39:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L60) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  err <- mean(laply(errors,function(x){x}))
                                      ^
```
[inst/site/direct_optimizer_test.R:60:41:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L60) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
  err <- mean(laply(errors,function(x){x}))
                                        ^
```
[inst/site/direct_optimizer_test.R:92:3:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/direct_optimizer_test.R#L92) *style:* **Commented code should be removed.**
```r
# nloptr.print.options()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[inst/site/makedata.R:3:2:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L3) *style:* **Commented code should be removed.**
```r
## makes a gun-point dataset
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/site/makedata.R:8:14:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L8) *style:* **Use <-, not =, for assignment.**
```r
labels_train = unlist(dtrain[,1])
             ^
```
[inst/site/makedata.R:8:31:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L8) *style:* **Commas should always have a space after.**
```r
labels_train = unlist(dtrain[,1])
                              ^
```
[inst/site/makedata.R:9:13:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L9) *style:* **Use <-, not =, for assignment.**
```r
labels_test = unlist(dtest[,1])
            ^
```
[inst/site/makedata.R:9:29:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L9) *style:* **Commas should always have a space after.**
```r
labels_test = unlist(dtest[,1])
                            ^
```
[inst/site/makedata.R:11:37:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L11) *style:* **Commas should always have a space after.**
```r
data_train <- matrix(unlist(dtrain[,-1]), nrow = length(labels_train))
                                    ^
```
[inst/site/makedata.R:12:35:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L12) *style:* **Commas should always have a space after.**
```r
data_test <- matrix(unlist(dtest[,-1]), nrow = length(labels_test))
                                  ^
```
[inst/site/makedata.R:24:32:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L24) *style:* **Commas should always have a space after.**
```r
labels_train <- unlist(dtrain[,1])
                               ^
```
[inst/site/makedata.R:25:30:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L25) *style:* **Commas should always have a space after.**
```r
labels_test <- unlist(dtest[,1])
                             ^
```
[inst/site/makedata.R:27:37:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L27) *style:* **Commas should always have a space after.**
```r
data_train <- matrix(unlist(dtrain[,-1]), nrow = length(labels_train))
                                    ^
```
[inst/site/makedata.R:28:35:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/makedata.R#L28) *style:* **Commas should always have a space after.**
```r
data_test <- matrix(unlist(dtest[,-1]), nrow = length(labels_test))
                                  ^
```
[inst/site/readme_examples.R:14:16:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L14) *style:* **Commas should always have a space after.**
```r
abline(h = c(1,-1), lty = 2, col = "gray50")
               ^
```
[inst/site/readme_examples.R:15:36:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L15) *style:* **Commas should always have a space after.**
```r
legend(0, -4, c("scaled sine wave","z-normalized wave"),
                                   ^
```
[inst/site/readme_examples.R:16:18:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L16) *style:* **Commas should always have a space after.**
```r
       lty = c(1,1), lwd = c(1,1), col = c("blue","red"), cex = 0.8)
                 ^
```
[inst/site/readme_examples.R:16:32:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L16) *style:* **Commas should always have a space after.**
```r
       lty = c(1,1), lwd = c(1,1), col = c("blue","red"), cex = 0.8)
                               ^
```
[inst/site/readme_examples.R:16:51:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L16) *style:* **Commas should always have a space after.**
```r
       lty = c(1,1), lwd = c(1,1), col = c("blue","red"), cex = 0.8)
                                                  ^
```
[inst/site/readme_examples.R:24:27:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L24) *style:* **Commas should never have a space before.**
```r
abline(v = c(1, 1 + 7 / 3 , 1 + 7 / 3 * 2, 8), lty = 3, lwd = 2, col = "gray50")
                         ~^
```
[inst/site/readme_examples.R:38:13:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L38) *style:* **Commas should always have a space after.**
```r
y <- seq(-2,2, length = 100)
            ^
```
[inst/site/readme_examples.R:40:9:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L40) *style:* **Commas should always have a space after.**
```r
lines(x,y, type = "l", lwd = 5, col = "magenta")
        ^
```
[inst/site/readme_examples.R:62:82:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L62) *style:* **Commas should always have a space after.**
```r
cylinder <- manyseries_to_wordbag(CBF[["data_train"]][CBF[["labels_train"]] == 1,],
                                                                                ^
```
[inst/site/readme_examples.R:64:78:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L64) *style:* **Commas should always have a space after.**
```r
bell <- manyseries_to_wordbag(CBF[["data_train"]][CBF[["labels_train"]] == 2,],
                                                                             ^
```
[inst/site/readme_examples.R:66:80:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L66) *style:* **Commas should always have a space after.**
```r
funnel <- manyseries_to_wordbag(CBF[["data_train"]][CBF[["labels_train"]] == 3,],
                                                                               ^
```
[inst/site/readme_examples.R:71:7:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L71) *style:* **Use <-, not =, for assignment.**
```r
tfidf = bags_to_tfidf(
      ^
```
[inst/site/readme_examples.R:77:59:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L77) *style:* **Commas should always have a space after.**
```r
sample <- (CBF[["data_train"]][CBF[["labels_train"]] == 3,])[1,]
                                                          ^
```
[inst/site/readme_examples.R:77:64:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L77) *style:* **Commas should always have a space after.**
```r
sample <- (CBF[["data_train"]][CBF[["labels_train"]] == 3,])[1,]
                                                               ^
```
[inst/site/readme_examples.R:87:34:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L87) *style:* **Commas should always have a space after.**
```r
  pattern <- weighted_patterns[i,]
                                 ^
```
[inst/site/readme_examples.R:101:56:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L101) *style:* **Commas should always have a space after.**
```r
  scale_colour_gradientn(name = "Class specificity:  ",limits = c(0,1),
                                                       ^
```
[inst/site/readme_examples.R:101:69:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L101) *style:* **Commas should always have a space after.**
```r
  scale_colour_gradientn(name = "Class specificity:  ",limits = c(0,1),
                                                                    ^
```
[inst/site/readme_examples.R:109:47:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L109) *style:* **Commas should always have a space after.**
```r
        axis.text.x = element_text(size = 12),axis.text.y = element_blank(),
                                              ^
```
[inst/site/readme_examples.R:118:33:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L118) *style:* **Commas should always have a space after.**
```r
for (i in c(1:length(data_test[,1]))) {
                                ^
```
[inst/site/readme_examples.R:119:25:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L119) *style:* **Commas should always have a space after.**
```r
  series <- data_test[i,]
                        ^
```
[inst/site/readme_examples.R:127:23:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L127) *style:* **Place a space before left parenthesis, except in a function call.**
```r
error <- length(which((labels_test != labels_predicted))) / length(labels_test)
                      ^
```
[inst/site/readme_examples.R:132:7:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/readme_examples.R#L132) *style:* **Place a space before left parenthesis, except in a function call.**
```r
which((labels_test != labels_predicted))
      ^
```
[inst/site/test_RRA.R:15:25:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/test_RRA.R#L15) *style:* **Commas should always have a space after.**
```r
sax_df <- ldply(ecg_sax,function(x){x})
                        ^
```
[inst/site/test_RRA.R:15:36:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/test_RRA.R#L15) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
sax_df <- ldply(ecg_sax,function(x){x})
                                   ^
```
[inst/site/test_RRA.R:15:38:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/test_RRA.R#L15) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
sax_df <- ldply(ecg_sax,function(x){x})
                                     ^
```
[inst/site/test_RRA.R:16:26:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/test_RRA.R#L16) *style:* **Commas should always have a space after.**
```r
names(sax_df) <- c("idx","word")
                         ^
```
[inst/site/test_RRA.R:31:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/site/test_RRA.R#L31) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/test_data/bugs.R:1:108:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L1) *style:* **Use two spaces to indent, never tabs.**
```r
str_to_repair_grammar("adcc ccbb bbbd bbcb bdbb cbbc accb ccbb daba cbbc bbdb bcbb dabc bbcb adcc ccbc dabb	cbbd bbcb cdbb cbbc bbdc adcc cbcb bbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb cdab cbbc accb ccbb dabb cbbd bbcb bdbb cbbc accb ccbb cbbd bbcb bdbb cbbc accb ccbb dabb cbbd bbcb bdbb cbbc accc ccbc dacb bbbd 	bbcb bdbb cbbc accb ccbc dbba cbbc bbdb bcbb dbbc bbcb adcc ccbc daba cbbc bbdb bcbb dbbc bbcb adcb bdac dcbb cbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb bdab cbbc accb cdbb dbbb cbbd bbcb bdbb cbbc accc ccbb cbbd bbcb bdbb cbbc accb")
                                                                                ^
```
[inst/test_data/bugs.R:1:319:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L1) *style:* **Use two spaces to indent, never tabs.**
```r
str_to_repair_grammar("adcc ccbb bbbd bbcb bdbb cbbc accb ccbb daba cbbc bbdb bcbb dabc bbcb adcc ccbc dabb	cbbd bbcb cdbb cbbc bbdc adcc cbcb bbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb cdab cbbc accb ccbb dabb cbbd bbcb bdbb cbbc accb ccbb cbbd bbcb bdbb cbbc accb ccbb dabb cbbd bbcb bdbb cbbc accc ccbc dacb bbbd 	bbcb bdbb cbbc accb ccbc dbba cbbc bbdb bcbb dbbc bbcb adcc ccbc daba cbbc bbdb bcbb dbbc bbcb adcb bdac dcbb cbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb bdab cbbc accb cdbb dbbb cbbd bbcb bdbb cbbc accc ccbb cbbd bbcb bdbb cbbc accb")
                                                                                ^
```
[inst/test_data/bugs.R:2:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L2) *style:* **Use two spaces to indent, never tabs.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
^
```
[inst/test_data/bugs.R:6:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L6) *style:* **lines should not be more than 100 characters.**
```r
str_to_repair_grammar("adcc ccbb bbbd bbcb bdbb cbbc accb ccbb daba cbbc bbdb bcbb dabc bbcb adcc ccbc dabb	cbbd bbcb cdbb cbbc bbdc adcc cbcb bbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb cdab cbbc accb ccbb dabb cbbd bbcb bdbb cbbc accb ccbb cbbd bbcb bdbb cbbc accb ccbb dabb cbbd bbcb bdbb cbbc accc ccbc dacb bbbd 	bbcb bdbb cbbc accb ccbc dbba cbbc bbdb bcbb dbbc bbcb adcc ccbc daba cbbc bbdb bcbb dbbc bbcb adcb bdac dcbb cbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb bdab cbbc accb cdbb dbbb cbbd bbcb bdbb cbbc accc ccbb cbbd bbcb bdbb cbbc accb")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/test_data/bugs.R:11:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L11) *style:* **lines should not be more than 100 characters.**
```r
str_to_repair_grammar("dacb bbbd bbcb bdbb cbbc accb ccbc dbba cbbc bbdb bcbb dbbc bbcb adcc ccbc daba cbbc bbdb bcbb dbbc bbcb adcb bdac dcbb cbbd bbcb bdbb cbbc accb cdbb dbbb cbbd bccb bdab cbbc accb cdbb dbbb cbbd bbcb bdbb cbbc accc ccbb cbbd bbcb bdbb cbbc accb")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/test_data/bugs.R:14:6:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L14) *style:* **Use <-, not =, for assignment.**
```r
data = fread("/Users/psenin/workspace/grammarviz2_src/data/mitdb__100_180.txt")
     ^
```
[inst/test_data/bugs.R:14:15:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L14) *warning:* **Do not use absolute paths.**
```r
data = fread("/Users/psenin/workspace/grammarviz2_src/data/mitdb__100_180.txt")
              ^~~~~~
```
[inst/test_data/bugs.R:15:5:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L15) *style:* **Use <-, not =, for assignment.**
```r
sax = sax_via_window(data$V1, 160, 4, 4, "exact", 0.001)
    ^
```
[inst/test_data/bugs.R:16:5:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L16) *style:* **Use <-, not =, for assignment.**
```r
str = paste(unlist(sax), collapse =" ")
    ^
```
[inst/test_data/bugs.R:16:35:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L16) *style:* **Put spaces around all infix operators.**
```r
str = paste(unlist(sax), collapse =" ")
                                  ^~
```
[inst/test_data/bugs.R:17:9:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L17) *style:* **Use <-, not =, for assignment.**
```r
grammar = str_to_repair_grammar(str)
        ^
```
[inst/test_data/bugs.R:19:6:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L19) *style:* **Use <-, not =, for assignment.**
```r
str1 = grammar[[1]]$rule_string
     ^
```
[inst/test_data/bugs.R:20:4:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L20) *style:* **Place a space before left parenthesis, except in a function call.**
```r
for(i in c(2:95)){
   ^
```
[inst/test_data/bugs.R:21:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L21) *style:* **lines should not be more than 100 characters.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/test_data/bugs.R:21:14:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L21) *style:* **Use <-, not =, for assignment.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
             ^
```
[inst/test_data/bugs.R:21:14:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L21) *style:* **Put spaces around all infix operators.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
            ~^~
```
[inst/test_data/bugs.R:21:35:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L21) *style:* **Put spaces around all infix operators.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
                                  ^~
```
[inst/test_data/bugs.R:21:49:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L21) *style:* **Put spaces around all infix operators.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
                                                ^~
```
[inst/test_data/bugs.R:21:111:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L21) *style:* **Put spaces around all infix operators.**
```r
	str1 = gsub(paste(" R", i - 1, " ", sep = ""), paste(" ", grammar[[i]]$expanded_rule_string, " ", sep = ""), str1)
                                                                                ^~
```
[inst/test_data/bugs.R:26:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/inst/test_data/bugs.R#L26) *error:* **unexpected '>'**
```r
> library(jmotif)
^
```
[R/jmotif.R:25:27:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/jmotif.R#L25) *style:* **Commas should always have a space after.**
```r
        distance_matrix[i,j] <- (cutlines[i] - cutlines[j - 1]) * (cutlines[i] - cutlines[j - 1])
                          ^
```
[R/jmotif.R:27:27:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/jmotif.R#L27) *style:* **Commas should always have a space after.**
```r
        distance_matrix[j,i] <- distance_matrix[i,j]
                          ^
```
[R/jmotif.R:27:51:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/jmotif.R#L27) *style:* **Commas should always have a space after.**
```r
        distance_matrix[j,i] <- distance_matrix[i,j]
                                                  ^
```
[R/jmotif.R:34:72:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/jmotif.R#L34) *style:* **Commas should always have a space after.**
```r
    stop(paste("unable to get a distance matrix for the alphabet size",a_size))
                                                                       ^
```
[R/jmotif.R:62:21:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/jmotif.R#L62) *warning:* **no visible global function definition for ‘sax_distance_matrix’**
```r
      dist_table <- sax_distance_matrix(alphabet_size)
                    ^~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:67:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L67) *style:* **lines should not be more than 100 characters.**
```r
    .Call('jmotif_find_discords_hotsax', PACKAGE = 'jmotif', ts, w_size, paa_size, a_size, n_threshold, discords_num)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:123:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L123) *style:* **lines should not be more than 100 characters.**
```r
find_discords_rra <- function(series, w_size, paa_size, a_size, nr_strategy, n_threshold, discords_num) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:124:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L124) *style:* **lines should not be more than 100 characters.**
```r
    .Call('jmotif_find_discords_rra', PACKAGE = 'jmotif', series, w_size, paa_size, a_size, nr_strategy, n_threshold, discords_num)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:143:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L143) *style:* **lines should not be more than 100 characters.**
```r
    .Call('jmotif_series_to_wordbag', PACKAGE = 'jmotif', ts, w_size, paa_size, a_size, nr_strategy, n_threshold)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:162:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L162) *style:* **lines should not be more than 100 characters.**
```r
    .Call('jmotif_manyseries_to_wordbag', PACKAGE = 'jmotif', data, w_size, paa_size, a_size, nr_strategy, n_threshold)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:269:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L269) *style:* **lines should not be more than 100 characters.**
```r
    .Call('jmotif_sax_via_window', PACKAGE = 'jmotif', ts, w_size, paa_size, a_size, nr_strategy, n_threshold)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/RcppExports.R:381:1:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/R/RcppExports.R#L381) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test_cosine_sim.R:1:3:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosine_sim.R#L1) *style:* **Use <-, not =, for assignment.**
```r
a = c(2, 1, 0, 2, 0, 1, 1, 1)
  ^
```
[tests/testthat/test_cosine_sim.R:6:58:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosine_sim.R#L6) *style:* **Commas should always have a space after.**
```r
  expect_equal(0.1784162, as.numeric(cosine_dist(rbind(a,b))), tolerance = 1e-6)
                                                         ^
```
[tests/testthat/test_cosines.R:4:78:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosines.R#L4) *style:* **Commas should always have a space after.**
```r
bag1 <- manyseries_to_wordbag(CBF[["data_train"]][CBF[["labels_train"]] == 1,],
                                                                             ^
```
[tests/testthat/test_cosines.R:6:78:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosines.R#L6) *style:* **Commas should always have a space after.**
```r
bag2 <- manyseries_to_wordbag(CBF[["data_train"]][CBF[["labels_train"]] == 2,],
                                                                             ^
```
[tests/testthat/test_cosines.R:8:78:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosines.R#L8) *style:* **Commas should always have a space after.**
```r
bag3 <- manyseries_to_wordbag(CBF[["data_train"]][CBF[["labels_train"]] == 3,],
                                                                             ^
```
[tests/testthat/test_cosines.R:11:57:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosines.R#L11) *style:* **Commas should always have a space after.**
```r
sample <- (CBF[["data_test"]][CBF[["labels_test"]] == 3,])[1,]
                                                        ^
```
[tests/testthat/test_cosines.R:11:62:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_cosines.R#L11) *style:* **Commas should always have a space after.**
```r
sample <- (CBF[["data_test"]][CBF[["labels_test"]] == 3,])[1,]
                                                             ^
```
[tests/testthat/test_discord_brute_force.R:18:50:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_brute_force.R#L18) *style:* **Commas should always have a space after.**
```r
  expect_equal(discords[discords$position == 411,]$nn_distance, 1.5045846602966542)
                                                 ^
```
[tests/testthat/test_discord_hot_sax.R:16:50:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_hot_sax.R#L16) *style:* **Commas should always have a space after.**
```r
  expect_equal(discords[discords$position == 430,]$nn_distance, 5.252618285620532)
                                                 ^
```
[tests/testthat/test_discord_hot_sax.R:17:50:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_hot_sax.R#L17) *style:* **Commas should always have a space after.**
```r
  expect_equal(discords[discords$position == 318,]$nn_distance, 4.154825115936453)
                                                 ^
```
[tests/testthat/test_discord_hot_sax.R:18:51:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_hot_sax.R#L18) *style:* **Commas should always have a space after.**
```r
  expect_equal(discords[discords$position == 2080,]$nn_distance, 2.381003269560112)
                                                  ^
```
[tests/testthat/test_discord_hot_sax.R:19:49:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_hot_sax.R#L19) *style:* **Commas should always have a space after.**
```r
  expect_equal(discords[discords$position == 25,]$nn_distance, 2.363633774221037)
                                                ^
```
[tests/testthat/test_discord_rra.R:3:26:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_rra.R#L3) *style:* **Commas should always have a space after.**
```r
  expect_true(discords[1,]$start < 420)
                         ^
```
[tests/testthat/test_discord_rra.R:4:26:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_discord_rra.R#L4) *style:* **Commas should always have a space after.**
```r
  expect_true(discords[1,]$end > 420)
                         ^
```
[tests/testthat/test_early_abandoned_dist.R:3:38:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_early_abandoned_dist.R#L3) *style:* **Commas should always have a space after.**
```r
test_dist <- as.numeric(dist(rbind(a,b)))
                                     ^
```
[tests/testthat/test_early_abandoned_dist.R:7:44:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_early_abandoned_dist.R#L7) *style:* **Commas should always have a space after.**
```r
  expect_error(early_abandoned_dist(a, c(1,2), 1))
                                           ^
```
[tests/testthat/test_min_dist_equal.R:16:22:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist_equal.R#L16) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  expect_equal( sqrt((min_dist(str1, str2, 3)) ^ 2 / 2), 0.7421040279 )
                     ^
```
[tests/testthat/test_min_dist_equal.R:18:22:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist_equal.R#L18) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  expect_equal( sqrt((min_dist(str2, str3, 3)) ^ 2), 0.7421040279 )
                     ^
```
[tests/testthat/test_min_dist.R:3:14:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist.R#L3) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  expect_true( is_equal_mindist("aaa", "bbb")  )
             ^
```
[tests/testthat/test_min_dist.R:3:47:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist.R#L3) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  expect_true( is_equal_mindist("aaa", "bbb")  )
                                              ^
```
[tests/testthat/test_min_dist.R:5:15:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist.R#L5) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  expect_false( is_equal_mindist("aaa", "bbba")  )
              ^
```
[tests/testthat/test_min_dist.R:5:49:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist.R#L5) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  expect_false( is_equal_mindist("aaa", "bbba")  )
                                                ^
```
[tests/testthat/test_min_dist.R:7:15:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist.R#L7) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  expect_false( is_equal_mindist("aaa", "aca")  )
              ^
```
[tests/testthat/test_min_dist.R:7:48:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_min_dist.R#L7) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  expect_false( is_equal_mindist("aaa", "aca")  )
                                               ^
```
[tests/testthat/test_RePair_via_decompression.R:1:12:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_RePair_via_decompression.R#L1) *style:* **Use <-, not =, for assignment.**
```r
sax_string = paste(
           ^
```
[tests/testthat/test_RePair_via_decompression.R:10:19:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_RePair_via_decompression.R#L10) *style:* **Use <-, not =, for assignment.**
```r
  uncompressed_R0 = paste(grammar[[1]]$rule_string, " ", sep = "")
                  ^
```
[tests/testthat/test_RePair_via_decompression.R:14:23:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_RePair_via_decompression.R#L14) *style:* **Use <-, not =, for assignment.**
```r
      uncompressed_R0 = gsub(
                      ^
```
[tests/testthat/test_SAX_simple.R:16:53:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_SAX_simple.R#L16) *style:* **Commas should always have a space after.**
```r
                             nrow = 10, byrow = T)[,1], collapse = "")
                                                    ^
```
[tests/testthat/test_SAX_simple.R:18:53:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_SAX_simple.R#L18) *style:* **Commas should always have a space after.**
```r
                             nrow = 14, byrow = T)[,1], collapse = "")
                                                    ^
```
[tests/testthat/test_SAX_simple.R:20:52:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_SAX_simple.R#L20) *style:* **Commas should always have a space after.**
```r
                             nrow = 9, byrow = T)[,1], collapse = "")
                                                   ^
```
[tests/testthat/test_SAX_strategies.R:12:3:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_SAX_strategies.R#L12) *style:* **Commented code should be removed.**
```r
# plot(as.numeric(dat),t="l")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_SAX_via_window.R:12:3:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_SAX_via_window.R#L12) *style:* **Commented code should be removed.**
```r
# plot(as.numeric(dat),t="l")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_wordbag.R:17:61:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_wordbag.R#L17) *style:* **Commas should always have a space after.**
```r
  words <- table(matrix(unlist(sax1), ncol = 1, byrow = T)[,1])
                                                            ^
```
[tests/testthat/test_wordbag.R:22:44:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_wordbag.R#L22) *style:* **Commas should always have a space after.**
```r
                    wb1[wb1$words == "bca",]$counts)
                                           ^
```
[tests/testthat/test_wordbag.R:30:46:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_wordbag.R#L30) *style:* **Commas should always have a space after.**
```r
  wb2 <- manyseries_to_wordbag(t(t(rbind(dat,dat))), 6, 3, 3, "none", 0.01)
                                             ^
```
[tests/testthat/test_wordbag.R:41:61:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_wordbag.R#L41) *style:* **Commas should always have a space after.**
```r
  words <- table(matrix(unlist(sax1), ncol = 1, byrow = T)[,1])
                                                            ^
```
[tests/testthat/test_wordbag.R:46:39:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_wordbag.R#L46) *style:* **Commas should always have a space after.**
```r
               wb1[wb1$words == "bca",]$counts)
                                      ^
```
[tests/testthat/test_wordbag.R:54:46:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_wordbag.R#L54) *style:* **Commas should always have a space after.**
```r
  wb2 <- manyseries_to_wordbag(t(t(rbind(dat,dat))), 6, 3, 3, "mindist", 0.01)
                                             ^
```
[tests/testthat/test_znorm.R:1:3:](https://github.com/jMotif/jmotif-R/blob/bacb90a889089fa4b9d300f3a9d6ea99ebc92c50/tests/testthat/test_znorm.R#L1) *style:* **Use <-, not =, for assignment.**
```r
X = c(-1, -2, -1, 0, 2, 1, 1, 0)
  ^
```


@nllong @henryHorsey which name should be in measure_attributes.json?  class name or measure dir name?


@sud80 this seems to introduce a very very bad behaviour (https://github.com/ParsePlatform/parse-server/issues/2570)

I believe when an object is created it should return all the values, not only the values updated with a beforeSave...


Epvp whois command


Add link to this trello board in the README.md


Please create a pull request


Working on it.
I'll add isort check to travis run.


Thanks for these, @parkjc!


This fixed the superstar error spamming, but I am still having issues with https. Using https causes the program to lose too many packets from the kinect. I think something is causing https to time-out, because with the initial openssl inclusion commit it is able to work normally with https.


Well now I'm not sure!!!


113837787-High-Temp-Radiant-Energy-Loss-2 (RKStrand) - Win64-Windows-7-VisualStudio-12: OK (2332 of 2332 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg)


I'm using it on the stealth layla and it looks good to me, its losing
packets but it still tracks my skeleton and the audio seems to work.

On Aug 23, 2016 14:54, "Ryker Dial" <notifications@github.com> wrote:

> This fixed the superstar error spamming, but I am still having issues with
> https. Using https causes the program to lose too many packets from the
> kinect. I think something is causing https to time-out, because with the
> initial openssl inclusion commit it is able to work normally with https.
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/robotmoose/robotmoose/commit/0606d31c9de2c730209bf7ea13d924abbbd128bf#commitcomment-18751755>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ABvm0wOh8BhFfl_mPTgXWJU3hWvZ5aTGks5qi3o6gaJpZM4JrX6A>
> .
>


FYI: the list maintainer asked for actual site examples:
https://forums.lanik.us/viewtopic.php?p=100775&sid=96f527341573178ed91e5eb4c3ea16bb#p100775


Thanks for the speedy fix!


(I was talking about the difference between the source-code operand and the Machine Language operand that the assembler outputs for branch instructions.)

I wrote my message before I read Commodore's "preliminary" C65 document.  It says something that I did not expect.  It says that the ML operand is offset from the _**last**_ byte of the long-branch instructions (instead of the first byte of the next instruction [as with the short-branch instructions])!  If that is true, then what you wrote above is correct:  an offset of $3131 will jump to `*+$3133`.

I am confused.  Has that description been verified on a real C65?  Does "$13,$31,$31" jump to `*+$3133` or `*+$3134`?


This code was generated by acsim?


Looks like the version 3.5.1 archive contains no source code.