[inst/doc/trees_with_root_edge.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/trees_with_root_edge.R:6:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L6) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/trees_with_root_edge.R:10:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L10) *style:* **Commented code should be removed.**
```r
## ----fig.width = 3, fig.height = 3---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:14:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L14) *style:* **Commented code should be removed.**
```r
## ----fig.width = 3, fig.height = 3---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:18:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L18) *style:* **Commented code should be removed.**
```r
## ----fig.width = 7, fig.height = 7---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:22:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L22) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/trees_with_root_edge.R:25:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L25) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/trees_with_root_edge.R:27:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/trees_with_root_edge.R#L27) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_get_average_nltt.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:3:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L3) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:9:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L9) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:13:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L13) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:16:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L16) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:23:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L23) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:26:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L26) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:29:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L29) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:36:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L36) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:43:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L43) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:46:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L46) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:49:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L49) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:57:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L57) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:61:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L61) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:64:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L64) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:67:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L67) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:71:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L71) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:74:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L74) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:77:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L77) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:84:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L84) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:91:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L91) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:94:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L94) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_average_nltt.R:100:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_average_nltt.R#L100) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_get_nltt_values.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:8:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L8) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:15:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L15) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:22:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L22) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:26:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L26) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:33:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L33) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:37:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L37) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:40:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L40) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:44:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L44) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:51:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L51) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:57:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L57) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:63:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L63) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:67:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L67) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:70:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L70) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:74:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L74) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:77:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L77) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:84:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L84) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:90:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L90) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:99:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L99) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:103:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L103) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:106:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L106) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:110:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L110) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:114:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L114) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:117:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L117) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:121:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L121) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:127:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L127) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:133:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L133) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:137:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L137) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:141:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L141) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:144:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L144) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:151:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L151) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:157:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L157) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:169:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L169) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:173:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L173) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
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```
[inst/doc/vignette_get_nltt_values.R:179:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L179) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:184:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_get_nltt_values.R#L184) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_stretch_nltt_matrix.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:6:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L6) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:12:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L12) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:15:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L15) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:23:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L23) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:30:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L30) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:35:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L35) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:41:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L41) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:44:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L44) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:48:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L48) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:52:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L52) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:59:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L59) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:64:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L64) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:72:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L72) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:75:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L75) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:79:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L79) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:83:2:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L83) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:91:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/inst/doc/vignette_stretch_nltt_matrix.R#L91) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/ABC_SMC.R:280:26:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L280) *style:* **Trailing whitespace is superfluous.**
```r
  #check data type of phy
                         ^
```
[R/ABC_SMC.R:287:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L287) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ABC_SMC.R:293:5:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L293) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(parameters[2] < 0) {
    ^
```
[R/ABC_SMC.R:295:24:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L295) *style:* **Trailing whitespace is superfluous.**
```r
    stop("mcmc_nltt: ",
                       ^
```
[R/ABC_SMC.R:297:20:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L297) *style:* **Commas should always have a space after.**
```r
     "but mu was ",parameters[2]," instead")
                   ^
```
[R/ABC_SMC.R:297:34:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L297) *style:* **Commas should always have a space after.**
```r
     "but mu was ",parameters[2]," instead")
                                 ^
```
[R/ABC_SMC.R:340:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L340) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/ABC_SMC.R:341:11:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L341) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        if(parameters[j] >= 0 & parameters[1] > 0) {
          ^
```
[R/ABC_SMC.R:341:52:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L341) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        if(parameters[j] >= 0 & parameters[1] > 0) {
                                                   ^
```
[R/ABC_SMC.R:341:53:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L341) *style:* **Trailing whitespace is superfluous.**
```r
        if(parameters[j] >= 0 & parameters[1] > 0) {
                                                    ^~~~~~~~
```
[R/ABC_SMC.R:343:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/R/ABC_SMC.R#L343) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[tests/testthat/test_calculate_weight.R:7:6:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L7) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  for(i in 1:2) {
     ^
```
[tests/testthat/test_calculate_weight.R:12:20:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L12) *style:* **Put spaces around all infix operators.**
```r
    dunif(x[1], min=0, max=1000) *
                  ~^~
```
[tests/testthat/test_calculate_weight.R:12:27:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L12) *style:* **Put spaces around all infix operators.**
```r
    dunif(x[1], min=0, max=1000) *
                         ~^~
```
[tests/testthat/test_calculate_weight.R:13:20:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L13) *style:* **Put spaces around all infix operators.**
```r
    dunif(x[2], min=0, max=1000) }
                  ~^~
```
[tests/testthat/test_calculate_weight.R:13:27:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L13) *style:* **Put spaces around all infix operators.**
```r
    dunif(x[2], min=0, max=1000) }
                         ~^~
```
[tests/testthat/test_calculate_weight.R:13:34:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L13) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    dunif(x[2], min=0, max=1000) }
                                 ^
```
[tests/testthat/test_calculate_weight.R:14:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L14) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[tests/testthat/test_calculate_weight.R:16:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L16) *style:* **lines should not be more than 80 characters.**
```r
    calculate_weight(weights, particles, current=c(5, 5), sigma, prior_density_function), #log(5) - log(10) == -1 * (log(20) - log(10))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_calculate_weight.R:16:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L16) *style:* **Put spaces around all infix operators.**
```r
    calculate_weight(weights, particles, current=c(5, 5), sigma, prior_density_function), #log(5) - log(10) == -1 * (log(20) - log(10))
                                               ~^~
```
[tests/testthat/test_calculate_weight.R:16:92:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L16) *style:* **Commented code should be removed.**
```r
    calculate_weight(weights, particles, current=c(5, 5), sigma, prior_density_function), #log(5) - log(10) == -1 * (log(20) - log(10))
                                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_calculate_weight.R:17:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L17) *style:* **lines should not be more than 80 characters.**
```r
    calculate_weight(weights, particles, current=c(20, 20), sigma, prior_density_function), #so these should be equal, because jumping densities are symmetric (dnorm)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_calculate_weight.R:17:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L17) *style:* **Put spaces around all infix operators.**
```r
    calculate_weight(weights, particles, current=c(20, 20), sigma, prior_density_function), #so these should be equal, because jumping densities are symmetric (dnorm)
                                               ~^~
```
[tests/testthat/test_calculate_weight.R:20:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L20) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[tests/testthat/test_calculate_weight.R:22:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L22) *style:* **lines should not be more than 80 characters.**
```r
    calculate_weight(weights, particles, current=c(5, 5), sigma, prior_density_function),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_calculate_weight.R:22:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L22) *style:* **Put spaces around all infix operators.**
```r
    calculate_weight(weights, particles, current=c(5, 5), sigma, prior_density_function),
                                               ~^~
```
[tests/testthat/test_calculate_weight.R:22:90:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L22) *style:* **Trailing whitespace is superfluous.**
```r
    calculate_weight(weights, particles, current=c(5, 5), sigma, prior_density_function),
                                                                                ^
```
[tests/testthat/test_calculate_weight.R:23:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L23) *style:* **lines should not be more than 80 characters.**
```r
    calculate_weight(weights, particles, current=c(5.0, 5.0), sigma, prior_density_function),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_calculate_weight.R:23:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L23) *style:* **Put spaces around all infix operators.**
```r
    calculate_weight(weights, particles, current=c(5.0, 5.0), sigma, prior_density_function),
                                               ~^~
```
[tests/testthat/test_calculate_weight.R:26:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L26) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[tests/testthat/test_calculate_weight.R:27:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_calculate_weight.R#L27) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[tests/testthat/test_mcmc_nltt.R:7:29:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Put spaces around all infix operators.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                           ~^~
```
[tests/testthat/test_mcmc_nltt.R:7:32:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Commas should always have a space after.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                               ^
```
[tests/testthat/test_mcmc_nltt.R:7:37:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Put spaces around all infix operators.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                   ~^~
```
[tests/testthat/test_mcmc_nltt.R:7:41:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Commas should always have a space after.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                        ^
```
[tests/testthat/test_mcmc_nltt.R:7:44:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Put spaces around all infix operators.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                          ~^~
```
[tests/testthat/test_mcmc_nltt.R:7:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Commas should always have a space after.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                ^
```
[tests/testthat/test_mcmc_nltt.R:7:55:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Put spaces around all infix operators.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                     ~^~
```
[tests/testthat/test_mcmc_nltt.R:7:60:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Commas should always have a space after.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                           ^
```
[tests/testthat/test_mcmc_nltt.R:7:62:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L7) *style:* **Put spaces around all infix operators.**
```r
  p <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                            ~^~
```
[tests/testthat/test_mcmc_nltt.R:8:29:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Put spaces around all infix operators.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                           ~^~
```
[tests/testthat/test_mcmc_nltt.R:8:32:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Commas should always have a space after.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                               ^
```
[tests/testthat/test_mcmc_nltt.R:8:37:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Put spaces around all infix operators.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                   ~^~
```
[tests/testthat/test_mcmc_nltt.R:8:41:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Commas should always have a space after.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                        ^
```
[tests/testthat/test_mcmc_nltt.R:8:44:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Put spaces around all infix operators.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                          ~^~
```
[tests/testthat/test_mcmc_nltt.R:8:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Commas should always have a space after.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                ^
```
[tests/testthat/test_mcmc_nltt.R:8:55:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Put spaces around all infix operators.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                     ~^~
```
[tests/testthat/test_mcmc_nltt.R:8:60:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Commas should always have a space after.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                           ^
```
[tests/testthat/test_mcmc_nltt.R:8:62:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L8) *style:* **Put spaces around all infix operators.**
```r
  q <- TESS::tess.sim.taxa(n=1,nTaxa=50,max=100,lambda=1.0,mu=0.0)[[1]]
                                                            ~^~
```
[tests/testthat/test_mcmc_nltt.R:24:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **lines should not be more than 80 characters.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_mcmc_nltt.R:24:26:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                         ^
```
[tests/testthat/test_mcmc_nltt.R:24:32:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                               ^
```
[tests/testthat/test_mcmc_nltt.R:24:36:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                   ^
```
[tests/testthat/test_mcmc_nltt.R:24:42:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                         ^
```
[tests/testthat/test_mcmc_nltt.R:24:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                ^
```
[tests/testthat/test_mcmc_nltt.R:24:55:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                      ^
```
[tests/testthat/test_mcmc_nltt.R:24:65:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                               ~^~
```
[tests/testthat/test_mcmc_nltt.R:24:72:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                       ^
```
[tests/testthat/test_mcmc_nltt.R:24:78:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                            ~^~
```
[tests/testthat/test_mcmc_nltt.R:24:84:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ^
```
[tests/testthat/test_mcmc_nltt.R:24:92:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ~^~
```
[tests/testthat/test_mcmc_nltt.R:24:95:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ^
```
[tests/testthat/test_mcmc_nltt.R:24:100:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L24) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(p,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ~^~
```
[tests/testthat/test_mcmc_nltt.R:30:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **lines should not be more than 80 characters.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_mcmc_nltt.R:30:26:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                         ^
```
[tests/testthat/test_mcmc_nltt.R:30:32:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                               ^
```
[tests/testthat/test_mcmc_nltt.R:30:36:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                   ^
```
[tests/testthat/test_mcmc_nltt.R:30:42:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                         ^
```
[tests/testthat/test_mcmc_nltt.R:30:49:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                ^
```
[tests/testthat/test_mcmc_nltt.R:30:55:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                      ^
```
[tests/testthat/test_mcmc_nltt.R:30:65:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                               ~^~
```
[tests/testthat/test_mcmc_nltt.R:30:72:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                       ^
```
[tests/testthat/test_mcmc_nltt.R:30:78:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                            ~^~
```
[tests/testthat/test_mcmc_nltt.R:30:84:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ^
```
[tests/testthat/test_mcmc_nltt.R:30:92:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ~^~
```
[tests/testthat/test_mcmc_nltt.R:30:95:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Commas should always have a space after.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ^
```
[tests/testthat/test_mcmc_nltt.R:30:100:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L30) *style:* **Put spaces around all infix operators.**
```r
    colMeans(mcmc_nltt(q,LL_BD,c(1,0.01),c(TRUE,TRUE),iterations=10000,burnin=1000,thinning=1,sigma=0.5))[[1]],
                                                                                ~^~
```
[tests/testthat/test_mcmc_nltt.R:35:1:](https://github.com/richelbilderbeek/nLTT/blob/13537edf1eeda33ba34b7140465f37506073b09b/tests/testthat/test_mcmc_nltt.R#L35) *style:* **lines should not be more than 80 characters.**
```r
  expect_equal( #compare jumps in log space with jumps in normal space, should yield similar results
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


忽略release，取消忽略release/res


Projeto 1 - POO


It presents
![1](https://cloud.githubusercontent.com/assets/21981102/18510544/31bead80-7ab1-11e6-8b28-ec9f3515ff9b.png)


It has the potential to use mutliprocessing better... I'm a bit meh about it, but it's not a bad thing. It's also not release-critical, so you can leave it in the PR space and people can vote :)


TeamCity OTA+ :: rvi_sota_server :: ci [Build 994](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=13234&buildTypeId=ota_plus_RviSotaServer_Ci) outcome was **SUCCESS**
Summary: Tests passed: 237, ignored: 3 Build time: 00:08:25


TeamCity OTA+ :: rvi_sota_server :: ci [Build 995](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=13238&buildTypeId=ota_plus_RviSotaServer_Ci) outcome was **SUCCESS**
Summary: Tests passed: 237, ignored: 3 Build time: 00:08:20


You might use preload here :smile:


former recent graph, now only for <8.1.5
![image](https://cloud.githubusercontent.com/assets/4181164/18510503/b170c582-7a7e-11e6-998d-c5060d68a3d7.png)

new 8.1.5 graph
![image](https://cloud.githubusercontent.com/assets/4181164/18510512/c4a816be-7a7e-11e6-8673-cc978837edc0.png)

new 9.1.7+ graph
![image](https://cloud.githubusercontent.com/assets/4181164/18510605/36b5f12c-7a7f-11e6-8938-3dba2fa9d701.png)


I doubt this is correct :wink:


Why not uppercase though? It would make it more obvious that it is a constant