[inst/doc/trees_with_root_edge.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:6:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L6) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:10:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L10) *style:* **Commented code should be removed.**
```r
## ----fig.width = 3, fig.height = 3---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:14:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L14) *style:* **Commented code should be removed.**
```r
## ----fig.width = 3, fig.height = 3---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:18:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L18) *style:* **Commented code should be removed.**
```r
## ----fig.width = 7, fig.height = 7---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:22:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L22) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:25:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L25) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/trees_with_root_edge.R:27:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/trees_with_root_edge.R#L27) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_get_average_nltt.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:3:9:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L3) *style:* **Variable and function names should be all lowercase.**
```r
library(nLTT)
        ^~~~
```
[inst/doc/vignette_get_average_nltt.R:6:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L6) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:12:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L12) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:14:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L14) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:16:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L16) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:22:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L22) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:24:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L24) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:26:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L26) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:29:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L29) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:32:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L32) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:33:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L33) *style:* **lines should not be more than 80 characters.**
```r
nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny1), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:35:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L35) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L36) *style:* **lines should not be more than 80 characters.**
```r
nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny2), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:38:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L38) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:41:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:44:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L44) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L46) *style:* **lines should not be more than 80 characters.**
```r
newick2 <- "((((XD:1,ZD:1):1,CE:2):1,(FE:2,EE:2):1):4,((AE:1,BE:1):1,(WD:1,YD:1):1):5);"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:50:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L50) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:52:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L52) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:54:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L54) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:57:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L57) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:60:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L60) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:62:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L62) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:64:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L64) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:67:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L67) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:70:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L70) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:71:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L71) *style:* **lines should not be more than 80 characters.**
```r
nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny1), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:73:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L73) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:74:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L74) *style:* **lines should not be more than 80 characters.**
```r
nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny2), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:76:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L76) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:79:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L79) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_average_nltt.R:81:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_average_nltt.R#L81) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_get_nltt_values.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:4:9:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
library(nLTT)
        ^~~~
```
[inst/doc/vignette_get_nltt_values.R:8:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L8) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:15:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L15) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:17:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L17) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:22:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L22) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:26:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L26) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:28:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L28) *style:* **lines should not be more than 80 characters.**
```r
qplot(time, N, data = df, geom = "step", ylim = c(0,1), direction = "vh", main = "NLTT plot of phylogeny 1")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:28:53:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L28) *style:* **Commas should always have a space after.**
```r
qplot(time, N, data = df, geom = "step", ylim = c(0,1), direction = "vh", main = "NLTT plot of phylogeny 1")
                                                    ^
```
[inst/doc/vignette_get_nltt_values.R:30:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L30) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:32:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L32) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:34:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L34) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:37:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L37) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:41:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L41) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L43) *style:* **lines should not be more than 80 characters.**
```r
qplot(time, N, data = df, geom = "step", ylim = c(0,1), direction = "vh", main = "NLTT plot of phylogeny 2")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:43:53:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L43) *style:* **Commas should always have a space after.**
```r
qplot(time, N, data = df, geom = "step", ylim = c(0,1), direction = "vh", main = "NLTT plot of phylogeny 2")
                                                    ^
```
[inst/doc/vignette_get_nltt_values.R:45:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L45) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L46) *style:* **lines should not be more than 80 characters.**
```r
t <- nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny1), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:49:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L49) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L50) *style:* **lines should not be more than 80 characters.**
```r
t <- nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny2), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:53:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L53) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:57:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L57) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:60:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L60) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:61:41:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L61) *style:* **Commas should always have a space after.**
```r
t <- nLTT::get_nltt_values(c(phylogeny1,phylogeny2), dt = 0.2)
                                        ^
```
[inst/doc/vignette_get_nltt_values.R:64:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L64) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:65:42:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L65) *style:* **Commas should always have a space after.**
```r
df <- nLTT::get_nltt_values(c(phylogeny1,phylogeny2), dt = 0.01)
                                         ^
```
[inst/doc/vignette_get_nltt_values.R:67:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L67) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:68:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L68) *style:* **lines should not be more than 80 characters.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:68:54:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L68) *style:* **Commas should always have a space after.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
                                                     ^
```
[inst/doc/vignette_get_nltt_values.R:68:129:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L68) *style:* **Trailing whitespace is superfluous.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
                                                                                ^
```
[inst/doc/vignette_get_nltt_values.R:71:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L71) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:72:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L72) *style:* **lines should not be more than 80 characters.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:72:54:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L72) *style:* **Commas should always have a space after.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
                                                     ^
```
[inst/doc/vignette_get_nltt_values.R:72:102:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L72) *style:* **Trailing whitespace is superfluous.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
                                                                                ^
```
[inst/doc/vignette_get_nltt_values.R:75:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L75) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:77:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L77) *style:* **lines should not be more than 80 characters.**
```r
newick2 <- "((((XD:1,ZD:1):1,CE:2):1,(FE:2,EE:2):1):4,((AE:1,BE:1):1,(WD:1,YD:1):1):5);"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:82:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L82) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:84:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L84) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:86:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L86) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:89:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L89) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:93:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L93) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:95:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L95) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:97:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L97) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:100:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L100) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:104:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L104) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:105:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L105) *style:* **lines should not be more than 80 characters.**
```r
t <- nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny1), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:108:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L108) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:109:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L109) *style:* **lines should not be more than 80 characters.**
```r
t <- nLTT::stretch_nltt_matrix(nLTT::get_phylogeny_nltt_matrix(phylogeny2), dt = 0.20, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:112:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L112) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:116:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L116) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:117:41:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L117) *style:* **Commas should always have a space after.**
```r
t <- nLTT::get_nltt_values(c(phylogeny1,phylogeny2), dt = 0.2)
                                        ^
```
[inst/doc/vignette_get_nltt_values.R:120:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L120) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:121:42:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L121) *style:* **Commas should always have a space after.**
```r
df <- nLTT::get_nltt_values(c(phylogeny1,phylogeny2), dt = 0.01)
                                         ^
```
[inst/doc/vignette_get_nltt_values.R:123:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L123) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:124:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L124) *style:* **lines should not be more than 80 characters.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:124:54:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L124) *style:* **Commas should always have a space after.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
                                                     ^
```
[inst/doc/vignette_get_nltt_values.R:124:129:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L124) *style:* **Trailing whitespace is superfluous.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
                                                                                ^
```
[inst/doc/vignette_get_nltt_values.R:127:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L127) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:128:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L128) *style:* **lines should not be more than 80 characters.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:128:54:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L128) *style:* **Commas should always have a space after.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
                                                     ^
```
[inst/doc/vignette_get_nltt_values.R:128:102:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L128) *style:* **Trailing whitespace is superfluous.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
                                                                                ^
```
[inst/doc/vignette_get_nltt_values.R:131:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L131) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:140:53:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L140) *style:* **Trailing whitespace is superfluous.**
```r
phylogenies <- c(phylogeny1, phylogeny2, phylogeny3,
                                                    ^
```
[inst/doc/vignette_get_nltt_values.R:143:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L143) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:147:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L147) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:148:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L148) *style:* **lines should not be more than 80 characters.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:148:54:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L148) *style:* **Commas should always have a space after.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
                                                     ^
```
[inst/doc/vignette_get_nltt_values.R:148:129:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L148) *style:* **Trailing whitespace is superfluous.**
```r
qplot(t, nltt, data = df, geom = "point", ylim = c(0,1), main = "Average nLTT plot of phylogenies", color = id, size = I(0.1)) +
                                                                                ^
```
[inst/doc/vignette_get_nltt_values.R:151:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L151) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:152:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L152) *style:* **lines should not be more than 80 characters.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_get_nltt_values.R:152:54:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L152) *style:* **Commas should always have a space after.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
                                                     ^
```
[inst/doc/vignette_get_nltt_values.R:152:102:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L152) *style:* **Trailing whitespace is superfluous.**
```r
qplot(t, nltt, data = df, geom = "blank", ylim = c(0,1), main = "Average nLTT plot of phylogenies") +
                                                                                ^
```
[inst/doc/vignette_get_nltt_values.R:154:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_get_nltt_values.R#L154) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_nltt_statistic.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:2:9:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
library(nLTT)
        ^~~~
```
[inst/doc/vignette_nltt_statistic.R:4:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L4) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:7:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L7) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:10:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L10) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:13:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L13) *style:* **Commented code should be removed.**
```r
## ----fig.width = 7, fig.height = 4---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:21:22:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L21) *style:* **Trailing whitespace is superfluous.**
```r
  ape::rcoal(n = 10),
                     ^
```
[inst/doc/vignette_nltt_statistic.R:22:22:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L22) *style:* **Trailing whitespace is superfluous.**
```r
  ape::rcoal(n = 10),
                     ^
```
[inst/doc/vignette_nltt_statistic.R:23:16:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L23) *style:* **Trailing whitespace is superfluous.**
```r
  species_tree,
               ^
```
[inst/doc/vignette_nltt_statistic.R:27:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L27) *style:* **Commented code should be removed.**
```r
## ----fig.width = 7, fig.height = 10--------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:35:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L35) *style:* **Commented code should be removed.**
```r
## ----fig.width = 7, fig.height = 7---------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:39:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L39) *style:* **lines should not be more than 80 characters.**
```r
rect(par("usr")[1],par("usr")[3],par("usr")[2],par("usr")[4], col = colors()[240])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:39:20:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L39) *style:* **Commas should always have a space after.**
```r
rect(par("usr")[1],par("usr")[3],par("usr")[2],par("usr")[4], col = colors()[240])
                   ^
```
[inst/doc/vignette_nltt_statistic.R:39:34:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L39) *style:* **Commas should always have a space after.**
```r
rect(par("usr")[1],par("usr")[3],par("usr")[2],par("usr")[4], col = colors()[240])
                                 ^
```
[inst/doc/vignette_nltt_statistic.R:39:48:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L39) *style:* **Commas should always have a space after.**
```r
rect(par("usr")[1],par("usr")[3],par("usr")[2],par("usr")[4], col = colors()[240])
                                               ^
```
[inst/doc/vignette_nltt_statistic.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L45) *style:* **lines should not be more than 80 characters.**
```r
  nLTT::nltt_lines(p, lwd = 3, lty = 2, col = grDevices::heat.colors(n = 4)[col_index])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:49:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L49) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:54:27:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L54) *style:* **Variable and function names should be all lowercase.**
```r
  nltt_stats_exact[i]  <- nLTTstat_exact(species_tree, p)
                          ^~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:55:27:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
  nltt_stats_approx[i] <- nLTTstat(species_tree, p)
                          ^~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:59:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L59) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:62:38:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L62) *style:* **Trailing whitespace is superfluous.**
```r
  nltt_stat_exact = nltt_stats_exact,
                                     ^
```
[inst/doc/vignette_nltt_statistic.R:67:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L67) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:69:14:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L69) *style:* **Trailing whitespace is superfluous.**
```r
  nltt_stats,
             ^
```
[inst/doc/vignette_nltt_statistic.R:70:21:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L70) *style:* **Trailing whitespace is superfluous.**
```r
  id.vars = c("id"),
                    ^
```
[inst/doc/vignette_nltt_statistic.R:76:13:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L76) *style:* **Trailing whitespace is superfluous.**
```r
  df$method,
            ^
```
[inst/doc/vignette_nltt_statistic.R:80:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L80) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_nltt_statistic.R:82:13:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L82) *style:* **Trailing whitespace is superfluous.**
```r
  data = df,
            ^
```
[inst/doc/vignette_nltt_statistic.R:89:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_nltt_statistic.R#L89) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/vignette_stretch_nltt_matrix.R:1:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L1) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:3:9:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L3) *style:* **Variable and function names should be all lowercase.**
```r
library(nLTT)
        ^~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:6:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L6) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:10:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L10) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:12:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L12) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:15:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L15) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:19:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L19) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:21:27:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L21) *style:* **Put spaces around all infix operators.**
```r
points(nltt, pch = 19, col="red")
                         ~^~
```
[inst/doc/vignette_stretch_nltt_matrix.R:23:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L23) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:25:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L25) *style:* **lines should not be more than 80 characters.**
```r
stretch_matrix <- nLTT::stretch_nltt_matrix(nltt, dt = 0.25, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:28:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L28) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:30:27:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L30) *style:* **Put spaces around all infix operators.**
```r
points(nltt, pch = 19, col="red")
                         ~^~
```
[inst/doc/vignette_stretch_nltt_matrix.R:31:37:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L31) *style:* **Put spaces around all infix operators.**
```r
points(stretch_matrix, pch = 19, col="blue")
                                   ~^~
```
[inst/doc/vignette_stretch_nltt_matrix.R:33:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L33) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:37:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L37) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:39:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L39) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:42:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L42) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:46:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L46) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:48:27:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L48) *style:* **Put spaces around all infix operators.**
```r
points(nltt, pch = 19, col="red")
                         ~^~
```
[inst/doc/vignette_stretch_nltt_matrix.R:50:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L50) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:52:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L52) *style:* **lines should not be more than 80 characters.**
```r
stretch_matrix <- nLTT::stretch_nltt_matrix(nltt, dt = 0.25, step_type = "upper")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:55:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L55) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:57:27:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L57) *style:* **Put spaces around all infix operators.**
```r
points(nltt, pch = 19, col="red")
                         ~^~
```
[inst/doc/vignette_stretch_nltt_matrix.R:58:37:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L58) *style:* **Put spaces around all infix operators.**
```r
points(stretch_matrix, pch = 19, col="blue")
                                   ~^~
```
[inst/doc/vignette_stretch_nltt_matrix.R:60:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L60) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:61:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L61) *style:* **lines should not be more than 80 characters.**
```r
newick <- "((((XD:1,ZD:1):1,CE:2):1,(FE:2,EE:2):1):4,((AE:1,BE:1):1,(WD:1,YD:1):1):5);"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:64:1:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L64) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
add.scale.bar()
^~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:66:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L66) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/vignette_stretch_nltt_matrix.R:69:2:](https://github.com/richelbilderbeek/nLTT/blob/72fec5bbf9851195b423f564d1e7a662f0ea1f60/inst/doc/vignette_stretch_nltt_matrix.R#L69) *style:* **Commented code should be removed.**
```r
## ------------------------------------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


No, @ncorai is correct, there *is* a `version-1.3.0` branch (not the `version-1-3-0` branch which has since been deleted).
And really, new features should not be committed *in the middle of a release* (!) without the person doing so being willing to run *all* tests themselves to prove this didn't break anything.


没有return任何值，check的结果每次都是不成立的吧


Prepared statements, sold it!
I took for granted that it was using it.
Thanks for the quick answers ;)


@SofiaMargariti Are you sure? The framework version is defined in manifest.json, which btw is "1.0", so given that the version was 1.2.3 and not 1.0 (as defined in the manifest), I thought it was referring to the plugin version, like the one definded in package.json, no?

Also this header is for our own use and I think it should be aligned with the plugin version, so that on our API endpoints can track the version of the plugin used, no?


@Fasse fixed: 16b5042d6b7b909103bb9227b9f61c5432ed65ec


bindevent为啥需要把Covering返回，要链式调用吗？


**HW 1 Feedback**

**More tasty**
- Nice job with meticulous EDA, sanity checking, and comments for readability.
- #2 - This is both creative and accurate way of approaching this question. Haven't seen this approach before.
- #4 - Don't forget to label your chart.

**A Little More Morbid**
- #11 - Good job visualizing with a for statement. Alternatively, as we did in class, you can try: killings.age.hist(by=killings.race, figsize = (12,8), sharex = True, sharey = True)

**Less Morbid**
- #8 - Similarly for this: majors['Median'].hist(by=majors['Major_category'], sharex = True, sharey = True, figsize=(15,10))
- #10 - We were also looking for unemployment rates on this.

Nice work Vivek, or shall I say datasciencefreak! I learned some things from your approaches to these questions.


没注释呀 亲 你这么深的逻辑结构和这么深的回调嵌套，怎么一句注释都木有呢？


of course I didn't make these files in my repo >< hehe
I pushed my first pass at the Prime Palindrome problem _finally_. I have to admit, I ended up doing a bit of research for the integer reversal *but* I guess that's the point of this anyway? :) Let me know what you think!


OK


这是啥？


I tested this on 10.11.6. The documentation says it is called either when animation completes or when the animation is removed, in our case we do not remove it until completion, hence I think the behavior I was seeing is “correct”.


Challenge: https://www.codeeval.com/open_challenges/3/


fuck u ,sb


说实话，完全看不懂syncIs是啥英语语法


This is a branch 1 - testing


map和each各种瞎整，想起哪个用哪个


They're doing a workaround in the Linux kernel and in future chips, so future platforms should work correctly. Hopefully we won't need to worry about this again. AFAIK Samsung's Mongoose is the only ARM core that uses 128-byte cache lines.


Corrigé via 2c71374c35053e8ad2b3ddff64c5cf4a52fd59d9


Leave a line note


5626-Plant-HX-min-DT (mjwitte) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-IntegrationCoverage-Debug: OK (1763 of 1764 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.94%25-yellow.svg) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-70.89%25-green.svg)


Can you please paste the script for silent installer


Can we have constants for these?


On TW, the 'classic' modes are not installed by default - so the test needs to take care to install the package as needed

additionally, TW is not based on SLE and SLE-Classic is not available for Tumbleweed


I think it's OK to have it here, if this is a utility function that can be used in more than one place


Thats not right. For some reason my viewgroups were cut out.
The posts are missing the layouts. Here is how it should be.

<?xml version="1.0" encoding="utf-8"?>
<FrameLayout xmlns:android="http://schemas.android.com/apk/res/android"
    xmlns:tools="http://schemas.android.com/tools"
    android:layout_width="match_parent"
    android:layout_height="match_parent"
    tools:context="com.example.android.sunshine.app.MainActivity"
    android:id="@+id/container">
</FrameLayout>

and also fragment_main.xml

<FrameLayout xmlns:android="http://schemas.android.com/apk/res/android"
    xmlns:tools="http://schemas.android.com/tools"
    android:layout_width="match_parent"
    android:layout_height="match_parent"
    tools:context=".ForecastFragment">

    <!-- TODO: Update blank fragment layout -->
    <ListView
        android:layout_width="match_parent"
        android:layout_height="match_parent"
        android:id="@+id/listview_forecast" />

</FrameLayout>

and lastly list_item_forcast.xml

?xml version="1.0" encoding="utf-8"?>
<TextView xmlns:android="http://schemas.android.com/apk/res/android"
    android:layout_width="match_parent"
    android:layout_height="wrap_content"
    android:id="@+id/list_item_forecast_textview"
    android:gravity="center_vertical"
    android:minHeight="?android:attr/listPreferredItemHeight">

</TextView>


Very similar - there is work going on to not have icewm  installed on a default GNOME setup, so switching to it will only be possible after instllation


添田さん

お忙しい中、添削して頂きありがとうございます。
フローチャートの課題９、１０またアルゴリズムの課題１（バブルソート）のPDFを修正致しました。
お時間のある時にご確認頂ければと思います。

山内

2016年9月14日 14:02 gg-soeda <notifications@github.com>:

> 添田です。
> まず、フローチャートの分岐についてなのですが、ひし形の左側に分岐するのではなく、右側に分岐するようにお願いします。（PDF修正しなくても良いです。）
> ┌◇ ⇒ ◇┐
>
> 課題9について
> 最初に、入力値をXという箱で受けてますが、このXという箱は「TOPという文字が入っているか」のチェックの後、
> 数字のカウントアップに利用しています。なので、できれば最初の入力値を受ける箱は別名にしたいですね。
>
> 課題10について
> わかり辛くて申し訳ないのですが、「1に1加算してから表示」なので、数値のカウントアップのタイミングを繰り返し処理の最初に実施し
> てください。1～7ではなく、2～7が表示される形ですね。また、偶数奇数の判定後、表示以外の処理は一緒なので、
> 表示後の処理は１つにしても問題ありませんよ。
>
> 課題11について
> 自販機のフローとして、出来てます。時間があれば、それぞれの処理についてもっと細かく考えてみてください。
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/a-yamauchi217/Camp-Challenge/commit/9566c8d211deb9fb6c83b314d6839da1cd015cc4#commitcomment-19012773>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AVHZboMoRn_feHZExzMvkt6kkaB9VVXTks5qp4AAgaJpZM4J8Zua>
> .
>


versionNumbers (mitchute) - Win64-Windows-7-VisualStudio-12: OK (2333 of 2334 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.svg)


Nytt.


This doesn't really work. The `CoverabilityGraph` instance is cached as an extension on the `PetriNet` and a new one is only created if the cache doesn't provide one. However, this means that this function now only sometimes returns a `CoverabilityGraph` with the given `interrupter`. If the cache is non-empty, then the `interrupter` is ignored.

Thus, I fear/guess that for `CoverabilityGraph` the `ModuleInterrupter` cannot be given as an argument to the constructor, but needs to be an (optional?) argument to `calculateNodes`, `toReachabilityLTS()` and `toCoverabilityLTS()`.


??? what are you fuck for?


error


Related to: backdrop/backdrop-issues#1568


> http://api.jquery.com/jQuery.each/

> http://api.jquery.com/jQuery.map/

拿走不写


To avoid all the null checks, does it make sense to have a `NoOpInterrupter` which never throws? That one could be used instead of a null pointer where needed.


input_processor_refactor (mbadams5) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg)


The advantages of HTTPS sort of dissolve if you just fall back to HTTP if the security fails, though.


What do you suggest when they are not parent and child scopes? using a service?


I know, I'm just too lazy+busy to take time to setup it for now :)


Currently this is printing empty messages in my console every time I switch tabs:

    qml:


WYSIHTML editors created on textareas inside (eg) dialog boxes were not being properly destroyed when the dialog is closed.

Browser stacktrace after destroying the dialog/container was:
> wysihtml.js:10009 Uncaught TypeError: Cannot read property 'document' of null
>     getDocument @ wysihtml.js:10009
>     wysihtml.Editor.wysihtml.lang.Dispatcher.extend.parse @ wysihtml.js:16047
>     wysihtml.views.Textarea.wysihtml.views.View.extend.setValue @ wysihtml.js:15793
>     wysihtml.views.Synchronizer.Base.extend.fromComposerToTextarea @ wysihtml.js:15638
>     (anonymous function) @ wysihtml.js:15678

Note:
Adding `DOMNodeRemovedFromDocument` to the array passed to the `addEventListener` call on line 599 is insufficient for this fix.


Yes, it should be public in JVM


In addition to the above comment, I also worked on the _outlay_ of my code.

I.e. to start out a _chunk_ of code by `<- dataframe %<%`

This helps to read and understand the code better for myself to follow-up on. It took me quite a while to get into the swing of things this morning purely because my own _code_ is all over the place


i think, it would be better to send the log directly to you.


Alter! Mach Urlaub :D LGTM!


Hello,
any idea/code/comment is welcome...
I do not see the need of a new branch...  but as you prefer...


xxxxxxxxxxxx


I can't upload a file with same name as previous uploaded file after this change. Nothing happens when pressing continue after the upload. I don't know how to fix that. Can you please verify that?


typo in the name ;) s/Lats/Last/


Having this alternative done locally until PR 778 in upstream repo is added, or an alternative fix.


@axelchalon But the Catch on line 34 throws a new error which I assume then triggers the catch on line 47 directly, or is that wrong? So we catch the error here and bounce it to the catch on line 47 directly.


Yeah I wonder as well. Most compilers (and likely all the ones lodepng was made to work with) support it and it's less error prone (obligatory SO question http://stackoverflow.com/questions/1143936/pragma-once-vs-include-guards). I do wonder though why in this header file the pragma isn't at the top?


Hi,

the redraw_pending flag is not reset. If you play a second video from the same application (e.g. usign gst-play-1.0), it will lock up when switching to the second video because it waits for a frame forever


https://ci.appveyor.com/project/lotem/librime/build/feature/charset%20build%2013
has this build error on Windows

    C:\projects\librime\src\gear\charset_translator.cc(8): fatal error C1083: Cannot open include file: 'endian.h': No such file or directory [C:\projects\librime\build\src\rime.vcxproj]


Please use ```CHECK(...)``` instead:
```
CHECK(utils::MasterSlave::_masterMode || utils::MasterSlave::_slaveMode,
               "You can only use a point-to-point communication between two participants which both use a master. Please use distribution-type gather-scatter instead.");
```
Just like preciceCheck, but without the second argument ```methodname```.


Same for ```preciceInfo````, use ```INFO(message)```.


Related to: backdrop/backdrop-issues#1361


that solves the issue :)


Louis, can you please revert this commit and check for a different approach?! This breaks template backward compatibility.


What's wrong with u200b?


同上面某处，{}不会改变上下文；

另外，你这个方法既然叫做escPressed，e.which的判断不是应该在外面做好吗？你这样写，这个方法就应该叫做onKeyDown才对


This fix `Session_write_close();` also applies to download.php, right?


Since this is in the default externs - does any browser support all of those (even most of those)?


Hiiiiiii, pull request plz ;)@ecodonohoe


Right.


We've added an accelerometer for motion detection and logging and are also checking GPS speed periodically to determine if the vehicle is moving ( some newer vehicle manufacturers don't like when you attach to their loom to sense ignition )

installers suggested we try to sense ignition by monitoring fluctuations on the vehicle battery line ( been messing around with dueTimer to get "deterministic" ADC samples ) -some of teh existing indusrty players have resorted to this - but it doesn't work on hybrid or EV :( - so motion sense hysteresis is the default.


hehe


为啥不拼好了字符串，一次性渲染，你这样页面得重绘多少次？而且，每次都得重新查找'.ui-top-bar-view'这个元素

```
this.$mod.find( '.ui-top-bar-view' ).append($.map(topBarData.submit_info.current_wave_info, function ( wave ) {
    return  T.compile( tpls.topBar )( _this.monitoringModel.gatherTopBarData( wave , topBarData ) );
});
```


No need to override this function.


This class is not necessary. Use `UniqueTranslation` directly?


Add reCaptcha


Need more work:
Find/write a cross-platform replacement.


ReadableStream is supported in Chrome 52+ and Opera 39+. WritableStream is still in development.


I do this at the release sometimes. Exactly like @oscargus said.


希望@sentsin 大神能说说对这套 **jQuery 抽象视图接口**的意见、建议，若能和大神一起完善这个 **jQuery 插件通用底层库**，形成类似 require.js **AMD 规范**的东西，想必可以造福 **jQuery 生态圈**~


Can we have that fix for 2.06LTS as well please!?


Seems like a typo.


Ditto.


Because v9 implements an CSRF validation on any HTTP request. In this case, Mailgun connects to Odoo via HTTP GET with no csrf-token. This flags disables CSRF validation, this addon implements a HTTP validation using mailgun.apikey system parameters.


https://www.chromestatus.com/feature/6605041225957376
https://www.chromestatus.com/feature/4531143755956224


you could use very good lib named dini instead own https://github.com/robik/DIni


Contains a bug :/
Will have a look at it...


Fixes issue #15


Thank, I forgot to update that. Why do we actually have a .lkshp file when it could be generated the first time?


right


Our use dub native config format https://sdlang.org/


I think a UI component never should be responsible for attaching itself to a parent. I.e, returning HTML or a reference to a dom element is a better approach than the current appendTo-way. Getting a reference to the parent should not be necessary and might lead to unexpected problems. E.g the component might update the parent's attributes, delete siblings and so on.


I also think this branch will do -- there are already a few speed
improvements in this branch I'd like to merge ASAP, and this tiny extra
feature of
a timer was intended to replace some hacky timing calls that I had
included.
Of course I do not intend to keep speed-tweaking in this branch before a
merge has happened, but really I feel that until we have chopped off as
many
messy feature branches as possible it makes little sense to switch to
micro-pull-requests (that of course should be good target to aim at).
My 2 cents.

As for the timer, Ondrej, are you doing this any differently? I think it
would help to put developments on a shared branch just as they're started,
to avoid
duplication of efforts.

On 14 September 2016 at 09:44, Riccardo Petraglia <notifications@github.com>
wrote:

> Hello,
> any idea/code/comment is welcome...
> I do not see the need of a new branch... but as you prefer...
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/epfl-cosmo/i-pi-dev/commit/61270a30fa61fa4e7b52e11acbdda3e26b600839#commitcomment-19013942>,
> or mute the thread
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> .
>


But can this be a security hole?


@bcosca I'm for reverting this change.


input_processor_refactor (mbadams5) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-UnitTestsCoverage-Debug: OK (1192 of 1211 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-98.43%25-yellow.svg) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-31.96%25-green.svg)


Yes, but this is one small API, you have many APIs here that are not supported. Most of those externs are unsupported by any browser, if I understand correctly. This misleads developers and it is generally not the usual process in Closure Compiler (first a browser ships, then externs are added).
It might be better to move every currently globally unsupported API to the `contrib` externs folder.


There might be others in the future and the cost is negligible, but I won't argue the point (too much) either way. Would you accept a patch?


I meant to say either `forgot two dots` or `forgot to introduce two dots` :)


Will change it so it will retrieve it from the registry


Fixes #49 , right?


It's used as a word separator in the Kamer language. So basically we trimmed their spaces. :)


Hi MrNukealizer,
i need a new Uptade of this tool.
Work further on an update


Thanks for your updates. But the function of "knox_mc" still has something wrong, which results of “p_value” are always display “0”. (No matter what to change the "perm" or dataset). Looking forward to your feedback.


Yeah I think you're right, but then this behaviour is the same as what would happen if we did not have this catch.


Sure, but they totally depend on Zendesk... I.e. these are not constants but variables created when you create a new "custom field"


:D I didn't mean to change the name of the `Logger`, I meant you should log `Exception`s properly.


model的方法为什么叫做check什么什么，而且返回的东西也不对


True, that's kind of silly. I will remove it. Thanks ^_^
I also changed the get request to a head one, for some weird reason I retained the memory that the proxy doesn't do head requests yet :D


Perhaps it would be better to split off the mailing function as well. I.e. make a email_to_support( ) function that does kind of the same as the zendesk one. That way the view would be much cleaner and less if/else/then stuff in there.


Try the following:

1. Resize your browser, so the editor becomes i.e 500px wide
2. Add a textbox as poster, and make it use 100% width and height
3. Resize the browser window, so it becomes i.e 800px wide.

You should now see what I see, i.e. the textbox does not scale, and will no longer use 100% width and height


This is just a performance issue rewriting (better use integer indices than push)


Done


setter和getter的定义区分不出来，有的明明是setter，却有返回值，有的明明是getter，却啥都不返回.


git commit --amend may help here :) Also, I notice that Microsoft SmartQuotes(tm) are creeping into the HTML.


The thing is with many time series there's a good chance that a user wouldn't catch them of all in their dashboards/alerts, and so miss a problem. By having one big bucket of "your url parameters are wrong" that's less likely to happen.

https://prometheus.io/docs/practices/instrumentation/#logging


This was a real issue, yes. getocollisions does not return a boolean, as fastgetocollisions do. It returns an object. This has been corrected in later version.


这样并不能确认orderList是个数组


Related to: backdrop/backdrop-issues#1568


use the driveletter that you already have, there is no need for the $iso object


set constraints on the parameter: mandatory and string


“添加一部分”


it's not the right way


Thought it was needed but you are right changed it.


nice :)


done


Fixed 'referer' to be 'HTTP_REFERER' in https://github.com/backdrop/backdrop/commit/9a003450c5004390539a38295c751f693a3ea6a3.


Very nice ;)


If this is something that is needed from Spring, then a better approach is to define it as autowired in the template engine:

https://github.com/grails/grails-views/blob/master/core/src/main/groovy/grails/views/ResolvableGroovyTemplateEngine.groovy#L144

And then inject it into the view template:

https://github.com/grails/grails-views/blob/master/core/src/main/groovy/grails/views/ResolvableGroovyTemplateEngine.groovy#L198

Using `Holders` should be avoided and if I could I would delete that class altogether, unfortunately it is still needed for some corner cases of the framework


Do not use `Holders` or reference the applicationContext directly please


is this needed?


Need to check with @smiklosovic . Do you remember why in this line https://github.com/arquillian/arquillian-governor/blob/master/jira/src/main/java/org/arquillian/extension/governor/jira/impl/JiraTestExecutionDecider.java#L108 uses GovernorRegistry instead of getting the annotation from the `event.getTestMethod` and `event.getTestClass` ?


if no regionId it can be empty because for example netherlands does not have a region field in apple details.