[R/dEploidTools.R:1:22:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L1) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
fun.parse <- function( args ){
                     ^
```
[R/dEploidTools.R:1:28:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L1) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
fun.parse <- function( args ){
                           ^
```
[R/dEploidTools.R:2:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
    fun.local.checkAndIncreaseArgI <- function ( ){
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:2:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L2) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
    fun.local.checkAndIncreaseArgI <- function ( ){
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:2:48:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L2) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    fun.local.checkAndIncreaseArgI <- function ( ){
                                               ^
```
[R/dEploidTools.R:3:15:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L3) *style:* **Use <-, not =, for assignment.**
```r
        arg_i = arg_i+1
              ^
```
[R/dEploidTools.R:3:22:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L3) *style:* **Put spaces around all infix operators.**
```r
        arg_i = arg_i+1
                    ~^~
```
[R/dEploidTools.R:6:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
    outPrefix = "dataExplore"
    ^~~~~~~~~
```
[R/dEploidTools.R:6:15:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L6) *style:* **Use <-, not =, for assignment.**
```r
    outPrefix = "dataExplore"
              ^
```
[R/dEploidTools.R:7:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
    vcfFileName = ""
    ^~~~~~~~~~~
```
[R/dEploidTools.R:7:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L7) *style:* **Use <-, not =, for assignment.**
```r
    vcfFileName = ""
                ^
```
[R/dEploidTools.R:8:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
    refFileName = ""
    ^~~~~~~~~~~
```
[R/dEploidTools.R:8:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L8) *style:* **Use <-, not =, for assignment.**
```r
    refFileName = ""
                ^
```
[R/dEploidTools.R:9:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
    altFileName = ""
    ^~~~~~~~~~~
```
[R/dEploidTools.R:9:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L9) *style:* **Use <-, not =, for assignment.**
```r
    altFileName = ""
                ^
```
[R/dEploidTools.R:10:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L10) *style:* **Variable and function names should be all lowercase.**
```r
    plafFileName = ""
    ^~~~~~~~~~~~
```
[R/dEploidTools.R:10:18:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L10) *style:* **Use <-, not =, for assignment.**
```r
    plafFileName = ""
                 ^
```
[R/dEploidTools.R:11:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L11) *style:* **Variable and function names should be all lowercase.**
```r
    excludeFileName = ""
    ^~~~~~~~~~~~~~~
```
[R/dEploidTools.R:11:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L11) *style:* **Use <-, not =, for assignment.**
```r
    excludeFileName = ""
                    ^
```
[R/dEploidTools.R:12:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L12) *style:* **Variable and function names should be all lowercase.**
```r
    dEploidPrefix = ""
    ^~~~~~~~~~~~~
```
[R/dEploidTools.R:12:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L12) *style:* **Use <-, not =, for assignment.**
```r
    dEploidPrefix = ""
                  ^
```
[R/dEploidTools.R:13:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L13) *style:* **Variable and function names should be all lowercase.**
```r
    excludeBool = FALSE
    ^~~~~~~~~~~
```
[R/dEploidTools.R:13:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L13) *style:* **Use <-, not =, for assignment.**
```r
    excludeBool = FALSE
                ^
```
[R/dEploidTools.R:15:11:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L15) *style:* **Use <-, not =, for assignment.**
```r
    arg_i = 1
          ^
```
[R/dEploidTools.R:16:11:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L16) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    while ( arg_i < length(args) ){
          ^
```
[R/dEploidTools.R:16:33:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L16) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    while ( arg_i < length(args) ){
                                ^
```
[R/dEploidTools.R:17:14:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L17) *style:* **Use <-, not =, for assignment.**
```r
        argv = args[arg_i]
             ^
```
[R/dEploidTools.R:18:12:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L18) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( argv == "-vcf" ){
           ^
```
[R/dEploidTools.R:18:28:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L18) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( argv == "-vcf" ){
                           ^
```
[R/dEploidTools.R:19:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L19) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:19:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:19:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L19) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:19:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L19) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:20:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
            vcfFileName = args[arg_i]
            ^~~~~~~~~~~
```
[R/dEploidTools.R:20:25:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L20) *style:* **Use <-, not =, for assignment.**
```r
            vcfFileName = args[arg_i]
                        ^
```
[R/dEploidTools.R:21:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-plaf" ){
                  ^
```
[R/dEploidTools.R:21:36:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-plaf" ){
                                   ^
```
[R/dEploidTools.R:22:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L22) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:22:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:22:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L22) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:22:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L22) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:23:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
            plafFileName = args[arg_i]
            ^~~~~~~~~~~~
```
[R/dEploidTools.R:23:26:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L23) *style:* **Use <-, not =, for assignment.**
```r
            plafFileName = args[arg_i]
                         ^
```
[R/dEploidTools.R:24:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-ref" ){
                  ^
```
[R/dEploidTools.R:24:35:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-ref" ){
                                  ^
```
[R/dEploidTools.R:25:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L25) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:25:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:25:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L25) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:25:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L25) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:26:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
            refFileName = args[arg_i]
            ^~~~~~~~~~~
```
[R/dEploidTools.R:26:25:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L26) *style:* **Use <-, not =, for assignment.**
```r
            refFileName = args[arg_i]
                        ^
```
[R/dEploidTools.R:27:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L27) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-alt" ){
                  ^
```
[R/dEploidTools.R:27:35:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L27) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-alt" ){
                                  ^
```
[R/dEploidTools.R:28:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L28) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:28:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:28:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L28) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:28:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L28) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:29:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L29) *style:* **Variable and function names should be all lowercase.**
```r
            altFileName = args[arg_i]
            ^~~~~~~~~~~
```
[R/dEploidTools.R:29:25:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L29) *style:* **Use <-, not =, for assignment.**
```r
            altFileName = args[arg_i]
                        ^
```
[R/dEploidTools.R:30:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L30) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-exclude" ){
                  ^
```
[R/dEploidTools.R:30:39:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L30) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-exclude" ){
                                      ^
```
[R/dEploidTools.R:31:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L31) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:31:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L31) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:31:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L31) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:31:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:32:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L32) *style:* **Variable and function names should be all lowercase.**
```r
            excludeFileName = args[arg_i]
            ^~~~~~~~~~~~~~~
```
[R/dEploidTools.R:32:29:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L32) *style:* **Use <-, not =, for assignment.**
```r
            excludeFileName = args[arg_i]
                            ^
```
[R/dEploidTools.R:33:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L33) *style:* **Variable and function names should be all lowercase.**
```r
            excludeBool = TRUE
            ^~~~~~~~~~~
```
[R/dEploidTools.R:33:25:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L33) *style:* **Use <-, not =, for assignment.**
```r
            excludeBool = TRUE
                        ^
```
[R/dEploidTools.R:34:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L34) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-o" ){
                  ^
```
[R/dEploidTools.R:34:33:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L34) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-o" ){
                                ^
```
[R/dEploidTools.R:35:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L35) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:35:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:35:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L35) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:35:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L35) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:36:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
            outPrefix = args[arg_i]
            ^~~~~~~~~
```
[R/dEploidTools.R:36:23:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L36) *style:* **Use <-, not =, for assignment.**
```r
            outPrefix = args[arg_i]
                      ^
```
[R/dEploidTools.R:37:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-dEprefix" ){
                  ^
```
[R/dEploidTools.R:37:40:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        } else if ( argv == "-dEprefix" ){
                                       ^
```
[R/dEploidTools.R:38:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L38) *style:* **Use <-, not =, for assignment.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                  ^
```
[R/dEploidTools.R:38:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:38:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L38) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:38:52:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
            arg_i = fun.local.checkAndIncreaseArgI ( )
                                                   ^
```
[R/dEploidTools.R:39:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
            dEploidPrefix = args[arg_i]
            ^~~~~~~~~~~~~
```
[R/dEploidTools.R:39:27:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L39) *style:* **Use <-, not =, for assignment.**
```r
            dEploidPrefix = args[arg_i]
                          ^
```
[R/dEploidTools.R:44:15:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L44) *style:* **Use <-, not =, for assignment.**
```r
        arg_i = arg_i + 1
              ^
```
[R/dEploidTools.R:51:8:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( plafFileName == "" ){
       ^
```
[R/dEploidTools.R:51:10:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L51) *style:* **Variable and function names should be all lowercase.**
```r
    if ( plafFileName == "" ){
         ^~~~~~~~~~~~
```
[R/dEploidTools.R:51:28:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( plafFileName == "" ){
                           ^
```
[R/dEploidTools.R:58:12:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L58) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    return ( list ( vcfFileName = vcfFileName,
           ^
```
[R/dEploidTools.R:58:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L58) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    return ( list ( vcfFileName = vcfFileName,
                  ^
```
[R/dEploidTools.R:58:35:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L58) *style:* **Variable and function names should be all lowercase.**
```r
    return ( list ( vcfFileName = vcfFileName,
                                  ^~~~~~~~~~~
```
[R/dEploidTools.R:59:35:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
                    refFileName = refFileName,
                                  ^~~~~~~~~~~
```
[R/dEploidTools.R:60:35:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L60) *style:* **Variable and function names should be all lowercase.**
```r
                    altFileName = altFileName,
                                  ^~~~~~~~~~~
```
[R/dEploidTools.R:61:36:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L61) *style:* **Variable and function names should be all lowercase.**
```r
                    plafFileName = plafFileName,
                                   ^~~~~~~~~~~~
```
[R/dEploidTools.R:62:33:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L62) *style:* **Variable and function names should be all lowercase.**
```r
                    outPrefix = outPrefix,
                                ^~~~~~~~~
```
[R/dEploidTools.R:63:37:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L63) *style:* **Variable and function names should be all lowercase.**
```r
                    dEploidPrefix = dEploidPrefix,
                                    ^~~~~~~~~~~~~
```
[R/dEploidTools.R:64:39:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L64) *style:* **Variable and function names should be all lowercase.**
```r
                    excludeFileName = excludeFileName,
                                      ^~~~~~~~~~~~~~~
```
[R/dEploidTools.R:65:35:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L65) *style:* **Variable and function names should be all lowercase.**
```r
                    excludeBool = excludeBool) )
                                  ^~~~~~~~~~~
```
[R/dEploidTools.R:65:47:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L65) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                    excludeBool = excludeBool) )
                                              ^
```
[R/dEploidTools.R:69:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L69) *style:* **Variable and function names should be all lowercase.**
```r
fun.dEploidPrefix <- function ( prefix ){
^~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:81:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L81) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
fun.extract.coverage <- function ( inputs ){
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:82:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
    if ( inputs$vcfFileName != "" ){
                ^~~~~~~~~~~
```
[R/dEploidTools.R:83:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
        return (extractCoverageFromVcf (inputs$vcfFileName))
                ^~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:83:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L83) *warning:* **no visible global function definition for ‘extractCoverageFromVcf’**
```r
        return (extractCoverageFromVcf (inputs$vcfFileName))
                ^~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:83:48:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
        return (extractCoverageFromVcf (inputs$vcfFileName))
                                               ^~~~~~~~~~~
```
[R/dEploidTools.R:85:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L85) *style:* **Variable and function names should be all lowercase.**
```r
        return (extractCoverageFromTxt (inputs$refFileName, inputs$altFileName))
                ^~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:85:17:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L85) *warning:* **no visible global function definition for ‘extractCoverageFromTxt’**
```r
        return (extractCoverageFromTxt (inputs$refFileName, inputs$altFileName))
                ^~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:85:48:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L85) *style:* **Variable and function names should be all lowercase.**
```r
        return (extractCoverageFromTxt (inputs$refFileName, inputs$altFileName))
                                               ^~~~~~~~~~~
```
[R/dEploidTools.R:85:68:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L85) *style:* **Variable and function names should be all lowercase.**
```r
        return (extractCoverageFromTxt (inputs$refFileName, inputs$altFileName))
                                                                   ^~~~~~~~~~~
```
[R/dEploidTools.R:109:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L109) *style:* **Variable and function names should be all lowercase.**
```r
extractCoverageFromTxt <- function ( refFileName, altFileName ){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:109:38:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L109) *style:* **Variable and function names should be all lowercase.**
```r
extractCoverageFromTxt <- function ( refFileName, altFileName ){
                                     ^~~~~~~~~~~
```
[R/dEploidTools.R:109:51:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L109) *style:* **Variable and function names should be all lowercase.**
```r
extractCoverageFromTxt <- function ( refFileName, altFileName ){
                                                  ^~~~~~~~~~~
```
[R/dEploidTools.R:110:9:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L110) *style:* **Use <-, not =, for assignment.**
```r
    ref = read.table(refFileName, header = TRUE, comment.char = "")
        ^
```
[R/dEploidTools.R:110:22:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L110) *style:* **Variable and function names should be all lowercase.**
```r
    ref = read.table(refFileName, header = TRUE, comment.char = "")
                     ^~~~~~~~~~~
```
[R/dEploidTools.R:111:9:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L111) *style:* **Use <-, not =, for assignment.**
```r
    alt = read.table(altFileName, header = TRUE, comment.char = "")
        ^
```
[R/dEploidTools.R:111:22:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L111) *style:* **Variable and function names should be all lowercase.**
```r
    alt = read.table(altFileName, header = TRUE, comment.char = "")
                     ^~~~~~~~~~~
```
[R/dEploidTools.R:112:39:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L112) *style:* **Commas should always have a space after.**
```r
    return ( data.frame( CHROM = ref[,1],
                                      ^
```
[R/dEploidTools.R:113:37:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L113) *style:* **Commas should always have a space after.**
```r
                         POS = ref[,2],
                                    ^
```
[R/dEploidTools.R:114:42:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L114) *style:* **Commas should always have a space after.**
```r
                         refCount = ref[,3],
                                         ^
```
[R/dEploidTools.R:115:42:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L115) *style:* **Commas should always have a space after.**
```r
                         altCount = alt[,3] )
                                         ^
```
[R/dEploidTools.R:120:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L120) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
fun.extract.exclude <- function (excludeFileName, excludeBool){
^~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:120:34:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
fun.extract.exclude <- function (excludeFileName, excludeBool){
                                 ^~~~~~~~~~~~~~~
```
[R/dEploidTools.R:120:51:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L120) *style:* **Variable and function names should be all lowercase.**
```r
fun.extract.exclude <- function (excludeFileName, excludeBool){
                                                  ^~~~~~~~~~~
```
[R/dEploidTools.R:121:10:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
    if ( excludeBool ) {
         ^~~~~~~~~~~
```
[R/dEploidTools.R:122:39:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L122) *style:* **Variable and function names should be all lowercase.**
```r
        return ( list ( excludeBool = excludeBool,
                                      ^~~~~~~~~~~
```
[R/dEploidTools.R:123:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L123) *style:* **lines should not be more than 80 characters.**
```r
                        excludeTable = read.table(excludeFileName, header = TRUE, comment.char = "")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:123:51:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L123) *style:* **Variable and function names should be all lowercase.**
```r
                        excludeTable = read.table(excludeFileName, header = TRUE, comment.char = "")))
                                                  ^~~~~~~~~~~~~~~
```
[R/dEploidTools.R:125:39:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L125) *style:* **Variable and function names should be all lowercase.**
```r
        return ( list ( excludeBool = excludeBool ))
                                      ^~~~~~~~~~~
```
[R/dEploidTools.R:147:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L147) *style:* **Variable and function names should be all lowercase.**
```r
extractCoverageFromVcf <- function ( vcfName, ADFieldIndex = 2 ){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:147:38:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L147) *style:* **Variable and function names should be all lowercase.**
```r
extractCoverageFromVcf <- function ( vcfName, ADFieldIndex = 2 ){
                                     ^~~~~~~
```
[R/dEploidTools.R:147:47:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L147) *style:* **Variable and function names should be all lowercase.**
```r
extractCoverageFromVcf <- function ( vcfName, ADFieldIndex = 2 ){
                                              ^~~~~~~~~~~~
```
[R/dEploidTools.R:150:12:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L150) *style:* **Place a space before left parenthesis, except in a function call.**
```r
         if( any( grepl( "gzfile connection", w) ) )
           ^
```
[R/dEploidTools.R:154:9:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L154) *style:* **Use <-, not =, for assignment.**
```r
    gzf = gzfile(vcfFile, open = "rb")
        ^
```
[R/dEploidTools.R:154:18:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L154) *style:* **Variable and function names should be all lowercase.**
```r
    gzf = gzfile(vcfFile, open = "rb")
                 ^~~~~~~
```
[R/dEploidTools.R:154:18:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L154) *warning:* **no visible binding for global variable ‘vcfFile’**
```r
    gzf = gzfile(vcfFile, open = "rb")
                 ^~~~~~~
```
[R/dEploidTools.R:155:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L155) *style:* **Variable and function names should be all lowercase.**
```r
    skipNum = 0
    ^~~~~~~
```
[R/dEploidTools.R:155:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L155) *style:* **Use <-, not =, for assignment.**
```r
    skipNum = 0
            ^
```
[R/dEploidTools.R:156:10:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L156) *style:* **Use <-, not =, for assignment.**
```r
    line = withCallingHandlers( readLines(gzf, n=1), warning=h)
         ^
```
[R/dEploidTools.R:156:49:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L156) *style:* **Put spaces around all infix operators.**
```r
    line = withCallingHandlers( readLines(gzf, n=1), warning=h)
                                               ~^~
```
[R/dEploidTools.R:156:61:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L156) *style:* **Put spaces around all infix operators.**
```r
    line = withCallingHandlers( readLines(gzf, n=1), warning=h)
                                                           ~^~
```
[R/dEploidTools.R:158:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L158) *style:* **Commented code should be removed.**
```r
        if (grepl("##", line )){
                    ^~~~~~~~~~~~
```
[R/dEploidTools.R:159:13:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L159) *style:* **Variable and function names should be all lowercase.**
```r
            skipNum = skipNum+1
            ^~~~~~~
```
[R/dEploidTools.R:159:21:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L159) *style:* **Use <-, not =, for assignment.**
```r
            skipNum = skipNum+1
                    ^
```
[R/dEploidTools.R:159:23:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L159) *style:* **Variable and function names should be all lowercase.**
```r
            skipNum = skipNum+1
                      ^~~~~~~
```
[R/dEploidTools.R:159:30:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L159) *style:* **Put spaces around all infix operators.**
```r
            skipNum = skipNum+1
                            ~^~
```
[R/dEploidTools.R:163:14:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L163) *style:* **Use <-, not =, for assignment.**
```r
        line = withCallingHandlers( readLines(gzf, n=1), warning=h)
             ^
```
[R/dEploidTools.R:163:53:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L163) *style:* **Put spaces around all infix operators.**
```r
        line = withCallingHandlers( readLines(gzf, n=1), warning=h)
                                                   ~^~
```
[R/dEploidTools.R:163:65:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L163) *style:* **Put spaces around all infix operators.**
```r
        line = withCallingHandlers( readLines(gzf, n=1), warning=h)
                                                               ~^~
```
[R/dEploidTools.R:167:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **lines should not be more than 80 characters.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:167:10:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Use <-, not =, for assignment.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
         ^
```
[R/dEploidTools.R:167:31:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Variable and function names should be all lowercase.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
                              ^~~~~~~
```
[R/dEploidTools.R:167:45:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Put spaces around all infix operators.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
                                           ~^~
```
[R/dEploidTools.R:167:46:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Variable and function names should be all lowercase.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
                                             ^~~~~~~
```
[R/dEploidTools.R:167:61:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Put spaces around all infix operators.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
                                                           ~^~
```
[R/dEploidTools.R:167:77:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Put spaces around all infix operators.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
                                                                           ~^~
```
[R/dEploidTools.R:167:119:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L167) *style:* **Put spaces around all infix operators.**
```r
    vcf  = read.table( gzfile(vcfName), skip=skipNum, header=T, comment.char="", stringsAsFactors = FALSE, check.names=FALSE)
                                                                                ~^~
```
[R/dEploidTools.R:169:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L169) *style:* **Variable and function names should be all lowercase.**
```r
    sampleName = names(vcf)[10]
    ^~~~~~~~~~
```
[R/dEploidTools.R:169:16:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L169) *style:* **Use <-, not =, for assignment.**
```r
    sampleName = names(vcf)[10]
               ^
```
[R/dEploidTools.R:171:9:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L171) *style:* **Use <-, not =, for assignment.**
```r
    tmp = vcf[[sampleName]]
        ^
```
[R/dEploidTools.R:171:16:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L171) *style:* **Variable and function names should be all lowercase.**
```r
    tmp = vcf[[sampleName]]
               ^~~~~~~~~~
```
[R/dEploidTools.R:172:11:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L172) *style:* **Use <-, not =, for assignment.**
```r
    field = strsplit(as.character(tmp),":")
          ^
```
[R/dEploidTools.R:172:40:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L172) *style:* **Commas should always have a space after.**
```r
    field = strsplit(as.character(tmp),":")
                                       ^
```
[R/dEploidTools.R:174:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L174) *style:* **Variable and function names should be all lowercase.**
```r
    tmpCovStr = unlist(lapply(field, `[[`, ADFieldIndex))
    ^~~~~~~~~
```
[R/dEploidTools.R:174:15:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L174) *style:* **Use <-, not =, for assignment.**
```r
    tmpCovStr = unlist(lapply(field, `[[`, ADFieldIndex))
              ^
```
[R/dEploidTools.R:174:44:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L174) *style:* **Variable and function names should be all lowercase.**
```r
    tmpCovStr = unlist(lapply(field, `[[`, ADFieldIndex))
                                           ^~~~~~~~~~~~
```
[R/dEploidTools.R:175:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L175) *style:* **Variable and function names should be all lowercase.**
```r
    tmpCov = strsplit(as.character(tmpCovStr),",")
    ^~~~~~
```
[R/dEploidTools.R:175:12:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L175) *style:* **Use <-, not =, for assignment.**
```r
    tmpCov = strsplit(as.character(tmpCovStr),",")
           ^
```
[R/dEploidTools.R:175:36:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L175) *style:* **Variable and function names should be all lowercase.**
```r
    tmpCov = strsplit(as.character(tmpCovStr),",")
                                   ^~~~~~~~~
```
[R/dEploidTools.R:175:47:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L175) *style:* **Commas should always have a space after.**
```r
    tmpCov = strsplit(as.character(tmpCovStr),",")
                                              ^
```
[R/dEploidTools.R:177:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L177) *style:* **Variable and function names should be all lowercase.**
```r
    refCount = as.numeric(unlist(lapply(tmpCov, `[[`, 1)))
    ^~~~~~~~
```
[R/dEploidTools.R:177:14:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L177) *style:* **Use <-, not =, for assignment.**
```r
    refCount = as.numeric(unlist(lapply(tmpCov, `[[`, 1)))
             ^
```
[R/dEploidTools.R:177:41:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L177) *style:* **Variable and function names should be all lowercase.**
```r
    refCount = as.numeric(unlist(lapply(tmpCov, `[[`, 1)))
                                        ^~~~~~
```
[R/dEploidTools.R:178:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L178) *style:* **Variable and function names should be all lowercase.**
```r
    altCount = as.numeric(unlist(lapply(tmpCov, `[[`, 2)))
    ^~~~~~~~
```
[R/dEploidTools.R:178:14:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L178) *style:* **Use <-, not =, for assignment.**
```r
    altCount = as.numeric(unlist(lapply(tmpCov, `[[`, 2)))
             ^
```
[R/dEploidTools.R:178:41:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L178) *style:* **Variable and function names should be all lowercase.**
```r
    altCount = as.numeric(unlist(lapply(tmpCov, `[[`, 2)))
                                        ^~~~~~
```
[R/dEploidTools.R:180:39:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L180) *style:* **Commas should always have a space after.**
```r
    return ( data.frame( CHROM = vcf[,1],
                                      ^
```
[R/dEploidTools.R:181:37:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L181) *style:* **Commas should always have a space after.**
```r
                         POS = vcf[,2],
                                    ^
```
[R/dEploidTools.R:182:37:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L182) *style:* **Variable and function names should be all lowercase.**
```r
                         refCount = refCount,
                                    ^~~~~~~~
```
[R/dEploidTools.R:183:37:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L183) *style:* **Variable and function names should be all lowercase.**
```r
                         altCount = altCount )
                                    ^~~~~~~~
```
[R/dEploidTools.R:204:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L204) *style:* **Variable and function names should be all lowercase.**
```r
extractPLAF<- function ( plafName ){
^~~~~~~~~~~
```
[R/dEploidTools.R:204:12:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L204) *style:* **Put spaces around all infix operators.**
```r
extractPLAF<- function ( plafName ){
          ~^
```
[R/dEploidTools.R:204:26:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L204) *style:* **Variable and function names should be all lowercase.**
```r
extractPLAF<- function ( plafName ){
                         ^~~~~~~~
```
[R/dEploidTools.R:205:25:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L205) *style:* **Variable and function names should be all lowercase.**
```r
    return ( read.table(plafName, header=T)$PLAF )
                        ^~~~~~~~
```
[R/dEploidTools.R:205:41:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L205) *style:* **Put spaces around all infix operators.**
```r
    return ( read.table(plafName, header=T)$PLAF )
                                       ~^~
```
[R/dEploidTools.R:210:11:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L210) *style:* **Put spaces around all infix operators.**
```r
    f.samp<-f.samp+err*(1-2*f.samp);
         ~^~~
```
[R/dEploidTools.R:210:19:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L210) *style:* **Put spaces around all infix operators.**
```r
    f.samp<-f.samp+err*(1-2*f.samp);
                 ~^~
```
[R/dEploidTools.R:210:23:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L210) *style:* **Put spaces around all infix operators.**
```r
    f.samp<-f.samp+err*(1-2*f.samp);
                     ~^~
```
[R/dEploidTools.R:210:24:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L210) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    f.samp<-f.samp+err*(1-2*f.samp);
                       ^
```
[R/dEploidTools.R:210:26:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L210) *style:* **Put spaces around all infix operators.**
```r
    f.samp<-f.samp+err*(1-2*f.samp);
                        ~^~
```
[R/dEploidTools.R:210:28:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L210) *style:* **Put spaces around all infix operators.**
```r
    f.samp<-f.samp+err*(1-2*f.samp);
                          ~^~
```
[R/dEploidTools.R:211:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **lines should not be more than 80 characters.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:211:8:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
      ~^~~
```
[R/dEploidTools.R:211:23:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                     ~^~
```
[R/dEploidTools.R:211:30:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                            ~^~
```
[R/dEploidTools.R:211:43:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                         ~^~
```
[R/dEploidTools.R:211:44:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                           ^
```
[R/dEploidTools.R:211:46:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                            ~^~
```
[R/dEploidTools.R:211:54:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                    ~^~
```
[R/dEploidTools.R:211:59:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                         ~^~
```
[R/dEploidTools.R:211:72:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                                      ~^~
```
[R/dEploidTools.R:211:77:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Commas should always have a space after.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                                            ^
```
[R/dEploidTools.R:211:77:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                                            ^
```
[R/dEploidTools.R:211:79:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                                             ~^~
```
[R/dEploidTools.R:211:87:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L211) *style:* **Put spaces around all infix operators.**
```r
    llk<-lbeta(cov.alt+f.samp*fac, cov.ref+(1-f.samp)*fac)-lbeta(f.samp*fac,(1-f.samp)*fac);
                                                                                ~^~
```
[R/dEploidTools.R:212:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L212) *style:* **lines should not be more than 80 characters.**
```r
    #  llk<-lgamma(fac*f.samp+cov.alt)+lgamma(fac*(1-f.samp)+cov.ref)-lgamma(fac*f.samp)-lgamma(fac*(1-f.samp));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:212:8:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L212) *style:* **Commented code should be removed.**
```r
    #  llk<-lgamma(fac*f.samp+cov.alt)+lgamma(fac*(1-f.samp)+cov.ref)-lgamma(fac*f.samp)-lgamma(fac*(1-f.samp));
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:213:25:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L213) *style:* **Put spaces around all infix operators.**
```r
    if (sum(is.nan(llk))>1){
                       ~^~
```
[R/dEploidTools.R:220:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L220) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
fun.dic.by.llk.var <- function ( tmpllk ){
^~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:221:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L221) *style:* **lines should not be more than 80 characters.**
```r
     return (  mean(-2*tmpllk) + var(-2*tmpllk)/2 )# D_bar + 1/2 var (D_theta), where D_theta = -2*tmpllk, and D_bar = mean(D_theta)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:221:23:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L221) *style:* **Put spaces around all infix operators.**
```r
     return (  mean(-2*tmpllk) + var(-2*tmpllk)/2 )# D_bar + 1/2 var (D_theta), where D_theta = -2*tmpllk, and D_bar = mean(D_theta)
                     ~^~
```
[R/dEploidTools.R:221:40:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L221) *style:* **Put spaces around all infix operators.**
```r
     return (  mean(-2*tmpllk) + var(-2*tmpllk)/2 )# D_bar + 1/2 var (D_theta), where D_theta = -2*tmpllk, and D_bar = mean(D_theta)
                                      ~^~
```
[R/dEploidTools.R:221:48:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L221) *style:* **Put spaces around all infix operators.**
```r
     return (  mean(-2*tmpllk) + var(-2*tmpllk)/2 )# D_bar + 1/2 var (D_theta), where D_theta = -2*tmpllk, and D_bar = mean(D_theta)
                                              ~^~
```
[R/dEploidTools.R:225:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L225) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
fun.dic.by.theta <- function ( tmpllk, thetallk ){
^~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:226:5:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L226) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**
```r
    DIC.WSAF.bar = -2 * sum(thetallk)
    ^~~~~~~~~~~~
```
[R/dEploidTools.R:226:18:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L226) *style:* **Use <-, not =, for assignment.**
```r
    DIC.WSAF.bar = -2 * sum(thetallk)
                 ^
```
[R/dEploidTools.R:227:1:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L227) *style:* **lines should not be more than 80 characters.**
```r
    return (  mean(-2*tmpllk) + (mean(-2*tmpllk) - DIC.WSAF.bar) ) # D_bar + pD, where pD = D_bar - D_theta, and D_bar = mean(D_theta)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/dEploidTools.R:227:22:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L227) *style:* **Put spaces around all infix operators.**
```r
    return (  mean(-2*tmpllk) + (mean(-2*tmpllk) - DIC.WSAF.bar) ) # D_bar + pD, where pD = D_bar - D_theta, and D_bar = mean(D_theta)
                    ~^~
```
[R/dEploidTools.R:227:41:](https://github.com/mcveanlab/DEploid-r/blob/1104a26f75529c05847f7d7fe745390cfc491134/R/dEploidTools.R#L227) *style:* **Put spaces around all infix operators.**
```r
    return (  mean(-2*tmpllk) + (mean(-2*tmpllk) - DIC.WSAF.bar) ) # D_bar + pD, where pD = D_bar - D_theta, and D_bar = mean(D_theta)
                                       ~^~
```


TaskCluster: https://tools.taskcluster.net/task-graph-inspector/#BDPvDV-aS1Cs_fKOrQKijA/


Now we defined a module called artists and injected it into our tunr module. It is a bit overkill to have the artists module in its own file (we could've just put empty brakets as a second argument in line 1 of index.controller.js) because were only dealing with a single model. But it may be wise when dealing with bigger apps to seperate things out. We define a controller on the artist module in js/artists/index.controller.js. The indexControllerCallback is basically a constructor function with a name property. Now in our tunr module routerfunction, we add that controller to be associated with the state we defined. ControllerAs is the string we use to refer to the instance of that controllers Constructor Function when we are inside the template that is also associated with that state. Thus in the template we can just say vm.name and it knows were talking about an instance of the ArtistsIndexController constuctor function which has the property name.


I definitely dig this.


@jakogut, cool, I wanted to mention them. I'm wondering whether or not to add `period_ns` and `duty_cycle_ns` properties to preserve the nanosecond integer interface, or to just keep it simple with the one float interface.


I seem to remember a complexity count issue where matrices would have a ton of zero entries, hence the eliminate_zeros(). But, this may have been due to the bug in filter_operator.. Did you test any with this?


this should be moved outside of the foreach as $canBeRead will be set to true if the very first row can be read (but won't be set back to false if other lines can't be read)


oi oi


But nothing leaks if either one of them are done by themselves, correct? (daemonize thread OR add shutdown hook)
If I'm wrong about that, I really just masked the original problem and made a new one.
Appreciate the feedback.


@niel fixed it


i think we should not return here


> Then that code will compile again. I'm sure that's not the correct way to do it, but I'm equally sure Walter will know the right thing to do in a matter of minutes, whereas it'd take me a few hours so I'm just leaving this for him to pick up.

Somewhat of a misunderstanding, we're not much faster than everybody else (as you can see by the regression and weird error message). As for anyone, a correct understanding of the problem is necessary to fix it.
Grepping in the source code helps,
```sh
git grep -nC2 MODimplicitConv | grep -C2 MODwild
```
to find a hint for a correct solution in callMatch.
Your hack is broken, b/c it actually modifies the function type's mod from inout to the modifier of this, even though the function might get called from elsewhere.
Also we deduplicate types, so this modification would change all types of all such inout functions.


@bdenlinger This is good! I don't think we want to push up log files though


haha


r+


Added an option to Execute.Sql() to enable/disable (default=false) echoing command (comment) to output file, because command may have comments and it sometimes messes with the execution of the file.
Changed .NET-generated timestamp into SQL-generated timestamp for VersionInfo table inserts (better representation of when migrations are actually applied, especially when they are exported to an output file instead of instantly executed – a.k.a. Preview Mode).


Reading from file is not working.  If statement always returns false even if file exists and permissions are 777 for file and folder.  Seeking expert advise.


Hi,

Is there anything I can help?

One thing I plan to test is using NuGet so we don't need to maintain the 3rd party packages. I plan to download the nuget executables. With packages.config of the windows branch, nuget can download all libraries. I wish that it can also automatically download the ones for current visual studio.


Watch out for the "s" at the beginning.


Well, we need some branch where stuff can be tested, unstable seems appropriate just by the name.
I would really question a bit if it is wise to run with different tools versions, such thing makes sense with full projects, eg CAL, but its unnecessarily complicates stuff with script tools.


closes #40.


Last refactor is complete. This is the smallest one by far. Switched from a switch statement for printing to the formatted visitor pattern.


I think I was told on linux mutexes are very cheap when the process was the last holder of the mutex, and no new thread has hold the mutex, however it has overhead else.
In your case, the two threads do access the mutexes all the time. Reducing the amount of mutexes access should help then.


How so? :0)


Macros for the win! Funny thing I just wrote a function to generate the __WEAPONHOLDER lines from existing weapons by DLC =D


saw approval from jedmccaleb
at https://github.com/vogel/stellar-core/commit/6bf54bde60fd86472efa059101f4edd21785fb53


merging vogel/stellar-core/fix-history-testnet-catchup = 6bf54bde into auto


vogel/stellar-core/fix-history-testnet-catchup = 6bf54bde merged ok, testing candidate = d27797cb


I seriously think we need urgently boxit improvements. Having all unstable packages moved to testing instead of selectively moving them doesn't really work out.


Hi neubig, sorry for breaking this. Thanks for fixing it. I'm surprised that adding -fPIC via "APPEND CUDA_NVCC_FLAGS" didn't end up being the same as doing it via "OPTIONS".


update_standards_gem (asparke2) - x86_64-MacOS-10.10-clang: OK (2389 of 2452 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-97.43%25-yellow.svg)


Ahh.. need to fix this I believe: spaces after commas in macro functions are not good.
"__WEAPONHOLDER(hlc_rifle_M1903A1OMR, hlc_5rnd_3006_1903, M1903A1(One-Man Revolution), Niarms_M1903, Toadie, SniperRifles);" ->
__WEAPONHOLDER(hlc_rifle_M1903A1OMR,hlc_5rnd_3006_1903,M1903A1(One-Man Revolution),Niarms_M1903,Toadie,SniperRifles);


@gixbit Nowhere because:
1) This isn't maintained anymore, so you *should not* expect issues to be fixed.
2) Your complaints were simply insulting as if you had taken the time, you would see that this issue has been raised in the previous comment and overall your tone was extremely condescending.

If you really care so much, you obviously know what you are doing so go ahead and just fork this and compile your own version with the fix instead of wasting time complaining on a dead project's repo just because you don't understand that panda and I have better things to do than to support a deprecated project like this.


Ah - thanks very much for the reply. I had grabbed the latest development branch build, which looks like it has the -no-lock-index update but not the git upgrade.  Will keep an eye out for the next merge/build to take the latest git and this improvement.  👍


Attention, on a dit qu'on évitait spécifiquement de matcher directement nos opcodes pour pouvoir faire de la récursion dessus. C'est même pour ça qu'on les stock dans un autre module


but doesnt radiant read only the normal etmain? I just see when I add custom ETL texturepack and models I always put them in etmain in gameinstall


@shorowit Not sure what you mean. This is in the ddy file. Do you mean update all the unit test resource osm files so that they have sizing based on 99%?


Dear Piyali,

please try with the updated version of pc_varcontent.

  Do you think adding the ldownsample flag and corresponding changes in pc_varcontent may have created an

   error? What does this flag do?

The function of this flag is to signalize that a downsampled snapshot instead of a normal one is read.

pc_read_var is detecting this from the name of the varfile (VARd<number> vs. VAR<number>).

Best wishes,

Matthias


Changes look good


besser es merken 2 als keiner ... brindosch hat mich auf die spur gebracht. in der effekt.cpp is auch noch nen haken drin. hab den auch schon gefixed


Thanks a lot Nissim. I got the file.

On 14 Oct 2016 11:56 pm, "Nissim Nabar" <notifications@github.com> wrote:

>
>
> Hi,
>
>
> The loan.csv file was in the dataset I received as part of a recruitment
> process.
>
>
> I believe it is available on kaggle as part of Lending Club loan data.
>
>
> https://www.kaggle.com/wendykan/lending-club-loan-data
>
>
> I am traveling till October 25th. Please let me know if you find the
> dataset, else I can send it once I am back. Let me know your email ID.
>
>
> Regards,
>
> Nisseem
>
>
> Get Outlook for Android
>
>
> From: Dr. Shiulee Chakraborty
>
> Sent: Friday, 14 October, 19:48
>
> Subject: Re: [nissimnabar/lending-club-loan-data] initial data analysis,
> logistic model and random forests (a3438fe)
>
> To: nissimnabar/lending-club-loan-data
>
> Cc: Nissim Nabar, Author
>
>
> Hello,
>
> I follow your coding but unable to fetch loan.csv file. Would you please
> help me in this matter?
>
>
> —
>
> You are receiving this because you authored the thread.
>
> Reply to this email directly, view it on GitHub, or mute the thread.
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/nissimnabar/lending-club-loan-data/commit/a3438fe83d1c51f872ea103c1b5025cff07c7367#commitcomment-19432540>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ASuW1uRZv_8ymg4PVG0HsS9Jxv9yMy5nks5qz8k2gaJpZM4KXRKg>
> .
>


Don't add the section and ui-search attributes, just add autocomplete and ui-type. Adding section="pahma" will cause the field not to save, because it will think the field is in the pahma extension part (not the common part, where it actually is). Adding ui-search won't break anything, but it's not needed -- the field wasn't searchable before, and it doesn't need to be searchable now.

In general every field tag you change should look the same as it did before, but with autocomplete and ui-type added.


I think that happens when script can't fetch auctions. Need to add a friendly error message or something


but exe is etl?


T


@Paulchen-Panther FYI


Also see [Issue 315](http://github.com/weidai11/cryptopp/issues/315).


When saving migrations to an output file, it was written using UTF-8 encoding, but BOM (Byte Order Mark) wasn't written at file beginning, which could make some text editors and/or SQL clients open the file using other encoding (e.g. ANSI), causing some Unicode characters (e.g. diacritics) to be messed up. Forcing encoding in StreamWriter makes it to write BOM, avoiding that issue.


@scottbrady91: I appreciate that this is an old(er) commit, but would you mind explaining the rationale behind preferring the sync over the async API? Thanks!


@shs96c btw, this creates a circular dependency with maven. Since htmlunit depends on selenium (and currently a different version of selenium).


I'm not sure version 1.2.3 is on npm yet...


You don't need this because you are requiring in the appjs


This material is the video clips, background research, stills and related materials for the film and the film management effort


No te olvides de agregar los modificadores de acceso: private o protected.


Class names starts with capital letter by convention


Esto debería ir en el constructor.


Can a new tag be created for the update to version 4.0.0? The most recent tag is 3.1.0.


@tytrip I just pushed a .gitignore change to fix that.


Введите переменные a,b,c,d из квадратного уравнения: ax^2+bx+c=d\n


Нет решений этого уравнения


"/^>>>$/"

probably hardcode


Thanks for committing your code, but in the future you should create your own 1900R folder to hold code related to your robot


i guess we want to use something like dx11 defered context. You create command lists and submit them. We would use something similar, but include minimal state and submit command list on functions that require a result . Dx11 slices have nice tips for that.


This folder is to hold the notes of DNA_Seq analysis.


Nevermind my last, it actually seems to binarize just fine even with those spaces.


sorry, hab das return vergessen.


Quillo, esta línea es una mierda eh, está mal indentada.


I don't know dx11 defered context, but that sounds like what I was saying.


all tests pass:
success: https://travis-ci.org/stellar/stellar-core/builds/167727314


Vielen Dank. Das passiert mir leider öfters. Bin halt nur Hausmeister. :-)


Sure, just pushed 4.0.0 and 4.0.1.


Please do not push directly to this repository. Create a pull request if you want any changes to take place.


You could delete these both if you wanted


I just set them both to empty strings initially. Then once they start typing into the textboxes the fields will change to whatever the user types


Doesn't make sens. boolean do not have lowest and highest values. But in other languages usually true is represented by 1 and false by 0.


fast-forwarding next-db-and-proto to auto = d27797cb


This should be called handleNameChange() since it only is updating the name. Its confusing that the key is called `value`. It should be called `name` since that is what it's actually representing. Change it to `name` here and online 10 in the initial state.


Spot on :)


If you change the field to `name` like I said above, you'll also have to change this one too `name`


Char may be also categorized as integer
http://stackoverflow.com/questions/11671908/can-the-char-type-be-categorized-as-an-integer


For posterity, this is the change that fixed verification of messages with blank subjects.


saw approval from jedmccaleb
at https://github.com/vogel/stellar-core/commit/d16a59190fdfa6dabdc7714be05ac913029be2ac


merging vogel/stellar-core/fix-slow-delete-old-entries = d16a5919 into auto


merging vogel/stellar-core/fix-slow-delete-old-entries = d16a5919 into auto failed


Thanks


`getServerMixinConfigs()`


Not Tested, just added basic code


nathan.vangheem your emails are not known to GithHb and thus it is impossible to know if you have signed the Plone Contributor Agreement, which is required to merge this pull request.

Learn about the Plone Contributor Agreement: http://docs.plone.org/develop/coredev/docs/contributors_agreement_explained.html How to add more emails to your GitHub account: https://help.github.com/articles/adding-an-email-address-to-your-github-account/


Maybe you have compiled against Python2.7?

```
$ mkdir build
$ cd build
$ cmake \
       -DWITH_PYTHON=1 \
       -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 \
       -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.5 \
       -DPYTHON_INCLUDE_PATH:PATH=/usr/include/python3.5 \
       -DPYTHON_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libpython3.5m.so \
       ..
```


![](https://github.trello.services/images/mini-trello-icon.png) [Trello add-ons](https://trello.com/c/xbmRvDiW/16-trello-add-ons)


@ronaldheft this fix has been crashing for our users who have Shared Albums turned on.  We upgraded from 0.33 (before this fix these albums were being ignored) to 0.35.1.

Specifically, it crashes here: https://github.com/facebook/react-native/blob/0.35-stable/Libraries/CameraRoll/RCTCameraRollManager.m#L193 saying image cannot be nil.  Upon further inspection: `filename=nil, width=0, height=0`.

My guess is that photo isn't on phone so this data is empty, but addObject complains with nil image.  Although I would think it should be displaying rest of metadata (which it has) and just skip image unless requested.  I'm doing a getPhotos to read in library.

I may a CameraRoll module to use PHAsset instead of older ALAsset if nothing exists.


@fluxusfrequency I've no idea whether this change to `cmd` from 'alt` is better for mac, but this follows a similar proposal for a vanilla processing mode can you help?


Reverting to 1521802f


Use TextUtils.isEmpty() for such checks


Open yourself a note/issue for the future (whenever it materializes), that you in fact can usefully introspect custom conds via https://github.com/dbsrgits/dbix-class/commit/7293955e14a24ad5abecc41e0ec485ccdfb3d2f0#diff-14a995427a39511927479ae4ffbbb9c7R2308

Cheers


Reducing the rate feedback gain makes it less sensitive to little shocks


**[unitTests_php_branches run failed](http://jenkins.wikia-prod:8080/job/unitTests_php_branches/37147/testReport/) for this commit**


Angle (integrated rate) is less affected by rate disturbances


We inject ngResource into our 'artists' module. This allows us to use $resource whenever we are using that module. Added a factory to artists module which uses $resource to make a request to our rails api. To understand why we pass an object with an update property, check out the documentation for $resource. Basically it already returns an object that has all the other http methods we care about and we're just adding that one that's missing. We inject the artist factory into our controller so that we can get the data from the request into our controller. The $resource query method gets called in ArtistsIndexControllerCallback when we put ArtistFactory.query. This returns an array of all of our artist objects.


i can share an album with you if you dont have any way to reproduce.
Test code below.  You need to set groupName to a shared album on your device then run on device.

```
let testParams1 = {first: 200, groupTypes: 'All', groupName: "SHARED_ALBUM_NAME", assetType: 'Photos'}
CameraRoll.getPhotos(testParams1)
  .then((res) => {
      console.log('this will crash', res);
  })
  .catch((err)=> {
      console.error('Error: '+err+'........ using camParams: '+JSON.stringify(testParams1));
  });
```


wtf?!


The ng-repeat directive essentially makes a div for each object in vm.artists and we choose to refer to each singular object as 'artist'. Thus each artist's name is rendered for this template.


возраст.html

Опять имя переменной, которое ни о чем не говорит(


I noticed something that i haven't explained before and the omission can cause errors : The arduino 1 is powered by the USB port , and the arduino 2 is powered by the same source of ic's unl2803 (12 vcc., 2 AMP.). However,  Arduino's 1 pin 8 SHOULD be connected  to GND. of 12vcc source. (The same that suply the arduino 2).  Don't ask me why. I can 't explain, just know it works !!!!


c++ ifstream good() method used together with std::getline read in the EOF as last line (empty)


возраст.html

Стиль кода должен быть един. Лучше если скобочка будет либо на новой строке всегда, либо на той же строке где и else.


I like this line in `~/.tigrc`:

```
bind status + !git commit --amend
```

– in status view (`s`), it allows to commit via --amend when typing `+` instead of `c`.


возраст.html

Нет завершающей строки(


I am working on more intelligent compile time evaluation code in the IR branch.

this code will be compile time evaluatable when that is done.


Thanks a lot for adding this. I look forward to checking the mailbox on my next new Death Knight character.  :-)


**[unitTests_php_branches run failed](http://jenkins.wikia-prod:8080/job/unitTests_php_branches/37148/testReport/) for this commit**


I can check your code out this weekend @alexiusacademia. Do you have any ideas in functions we can add? Right now I'm currently exploring utilizing numpy arrays for hydrology distributions instead of tuples/lists


угадай число.html

Во избежание багов, лучше всегда использовать строгое сравнение. В данном случае это не строгое неравенство, в котором применяется приведение типов.. 0==undefined, но 0 !== undefined


@sdumitriu should we remove second or first?


угадай число.html

Отступы не правильные. Лишние пробелы перед скобкой. Кстати, не видно в github, используешь ли ты табы или пробелы.. Общепринято использовать 2 или 4 пробела в качестве отступов. notepad++ и phpstorm можно настроить так, что при нажатии клавиши tab будет вставляться нужное количество пробелов для отступа.


.Net codestyle detected😎


__[API Description file `normalgh`](https://app.apiary.dev:9000/normalgh/editor) has not been updated in Apiary.io__ due to server timeout.
Please try it later by trying to redeliver the associated [web hook in settings](api.github.com/tully-test/test666/settings/hooks) of this repository. (Autogenerated message from apiary.io)


угадай число.html

А здесь наоборот не хватает отступа. Любой блок делается с дополнительным отступом. Если скобки с новой строки - то они на том же уровне, что и код вне блока - а блочный код с отступом.


Complete


угадай число.html

После html должна быт только одна завершающая строка. Без лишних отступов. phpstorm настраивается, что бы лишние отступы автоматом удалялись. А еще там можно настроить что бы табы и пробелы отображались - очень удобно.


Please give name to your api and any other object or class in your code with regards to its pupose.


Wasn't there some feature like that done a little while ago for NetRadiant? (I think I recall)


Roboto - разве стандартный шрифт? Не стандартные шрифты нужно подгружать с помощью font-face


Nice!


А если монитор меньше 1280px?


Copy/paste detected😁


what if we add password and enabled columns to the table : public.user.  There we already have username that holds the email.  Is it the same for the api?


额，表述有误，是 ` getAvatar 学生头像id获取后 加入性别赋值。。。 `


有什么建议，请发我的邮箱：2625086962@qq.com，谢谢您的支持！


inicio


Can we print the exception? so that we can know how dirty the data are.


The old, outdated, and archived "jquery-alert-dialogs" is completely different from this project. I discontinued it years ago and will not be updating it ever again.

You're welcome to use this plugin instead, which does work on all modern browsers including iOS.


Haven't gotten around to putting in the binary though


just add comment to this function. otherwise all is great!


@wonderwoman13, well shoot, I might have to manually enter game scores. This is what I found:
- SportRadar says they limit QPS for trial accounts. Need to pay to get full access (which limits total calls but doesn't throttle QPS). This API is way too expensive for me at $5000/mo
- FantasyData has a real nice API and doesn't throttle QPS. However, for trial accounts, it 'scrambles' the data. Yep, this includes scores. Auuuggh!

I'm not going to worry about past weeks because I've already populated losses up through week 5. For future weeks, I'll manually enter game scores (there's only 16 per week) and have the app calculate pick losses. So, I'll still have a rake task, it just will only run to populate losses in the Pick model.

This is so disappointing but doable. When millions of people adopt this I'll be able to afford the API. ;)


At this moment we are not planning to have multiple roles by users.  Maybe in the future is an improvement.
Why not avoiding the creation of a new table and getting roles from public.users in WebSecurityConfig # getAuthoritiesQuery() like :
`select email as username, role from public.user`


TaskHelper 的 taskImps 需要同步。


Or can you justify why the need of adding a new table now?


cool


-g does the same as NSGlobalDomain, and is less prone to problems due to future changes on Apple's side.


Out of question


Categorical + alphabetical ordering makes stuff a bit more organized and easier to find.


first


@lc4t build 的时候就会跑 lint，eslint 不成功会报错（


USE [GD2C2016]
GO

/****** Object:  Table [dbo].[AfiliadoTest]    Script Date: 13/10/2016 23:09:04 ******/
SET ANSI_NULLS ON
GO

SET QUOTED_IDENTIFIER ON
GO

SET ANSI_PADDING ON
GO

CREATE TABLE [dbo].[AfiliadoTest](
	[IdAfiliado] [int] IDENTITY(1,1) NOT NULL,
	[varNombre] [varchar](50) NULL,
	[varApellido] [varchar](50) NULL,
	[intNroAfiliado] [int] NULL,
	[varTipoDocumento] [varchar](5) NULL,
	[intNroDocumento] [int] NULL,
	[datFechaNacimiento] [datetime] NULL,
	[varSexo] [varchar](15) NULL,
	[varDireccion] [varchar](150) NULL,
	[intTelefono] [int] NULL,
	[varMail] [varchar](100) NULL,
	[varEstadoCivil] [varchar](20) NULL,
 CONSTRAINT [PK_AfiliadoTest] PRIMARY KEY CLUSTERED
(
	[IdAfiliado] ASC
)WITH (PAD_INDEX = OFF, STATISTICS_NORECOMPUTE = OFF, IGNORE_DUP_KEY = OFF, ALLOW_ROW_LOCKS = ON, ALLOW_PAGE_LOCKS = ON) ON [PRIMARY]
) ON [PRIMARY]

GO

SET ANSI_PADDING OFF
GO

corranse ese script para probarlo en la BD


`sudo nvram boot-args="mbasd=1"` results in the error `nvram: Error setting variable - 'boot-args': (iokit/common) general error`. The other's don't exit with an error, but they don't do anything anymore either..


Another changes


equal signs


Cái này t validate r mà, ô làm cái đặt min, max vào ô nhập của khung đăng nhập thôi nhé, reset cái này đi


Was now able to install torch on mac sierra... Although I had to comment out Line 82 to make this work.


j


@dugjason You having any success with this? I've been trying to upgrade to 0.11.0 and keep running into compile errors with sasl.


I think we should include the timestamp too.


h


Raghav, it looks like we have two state diagrams for the sign-up feature on the repo. Can you please remove whichever one is out-of-date?


`lock.$auth0.getSSOData` does not work anymore. Can still call `getSSOData` when using auth0.js directly


Have you ever heard of Pythagorean theorem? It's literally the best thing you can use to make this work. It is literally Distance^2 = (x2-x1)^2+(y2-y1)^2+(z2-z1)^2, then you just squareroot the whole thing and you get Distance = sqrt[(x2-x1)^2+(y2-y1)^2+(z2-z1)^2)]. But, because you have not done this, not only does it not work on the Y axis, at all, It doesnt even work on the Z or X axis. This is not fixed, it's a simple fix, and anyone who knows what a vector is and how to do vector operations and what Magnitude of vectors is will know how to do this. Amazing how this went unfixed for months.


Backport at https://github.com/strongloop/loopback-datasource-juggler/pull/1138

cc @Amir-61 @crandmck


ffff


Fixes #104


what if we use the existed public.user as:
` select email as username, password, enabled from public.user where email = ? `


hello hello


I looked into this a little further. This change was listed already listed in the breaking changes page: https://www.elastic.co/guide/en/kibana/5.0/breaking-changes-5.0.html

We'll need to ensure that the release notes and breaking changes pages are linking to each other so they are more easily discovered. I initially looked over the breaking changes page too.


Sorry, somehow I have no this bug everytime or have problems with reproduction. I have tested but probably miss it again.


test


Sometimes I got error when login with Administrator because of using `self.group_pos_multi_order`. Why dont you use `config.group_pos_multi_order` instead?


你写的不错,加入了transition,很好看


It looks like you used the RDD based Word2Vec in MLLib, this should easily transfer over to the cluster from my experience of running Word2Vec for a small amount of time on the CTA team


Actually, we can keep this here for now. Just make this function static and fix the braces.


コメントできる


なんで変更したの？


削除？


fasdf


新增了gulpfile.js ,用来合并压缩css和js文件


是吧, 你等会也写一个吧


なんでなの？


This project has not been maintained for months. That's how. Go complain somewhere else.


Just a stupid syntax error.


不需要的，TaskHelper的方法是在主线程执行的，onPostExecute和onCancelled中使用taskImps也是在主线程


mpls用のメソッドはryu.lib.packet.mpls
vni 用のメソッドはryu.lib.packet.vxlan
に定義して、そこから使用するように修正しました。


Is there a bug tracking this?


ryu.lib.ipにメソッドをに定義して、そこから使用するように修正しました。


![](https://github.trello.services/images/mini-trello-icon.png) [Login](https://trello.com/c/1sYWLrVv/2-login)


`text_to_bin`、`bin_to_text`というネーミングでryu.lib.ipに定義しました。


sdf


Something to do w/ the change in node v0.11.7


This feels like something which should go into Swift, not SwiftPM?


It was here: https://github.com/solvespace/solvespace/commit/d2c250324b2f9833ef9f4231c5145c4fd11abab7#diff-0faaaaa4a135fb024f850a910a878f3fR477; you need to update existing style for OCCLUDED; and also here: https://github.com/solvespace/solvespace/commit/d2c250324b2f9833ef9f4231c5145c4fd11abab7#diff-a84512a52dfab553794294655845619bL292.


afadsfasdfasdf


asdfasaa


hi


間違えて
https://tools.ietf.org/html/rfc6388#page-32
を参照していました。
今回は`mLDP P2MP LSP`、`mLDP P2MP LSP`は盛り込み対象外となりましたので
次回対処とさせていただきます。


Even as a temporary step, putting a hardcoded <style> tag inside the ContributionStatement component is pretty ugly. I do it only because ContributionStatement is rendered first to a data URL (on the way to becoming a PDF) and the way it is being done it doesn't have access to stylesheets.


initial repository


updating to add missing rest of result.


groupは完全に予想で`!H`にしていました。
マルチキャストグループはIPですので、4sか16sが正しいフォーマットになると思います。
今回`PIM-SSM Tree`、`PIM-SM Tree`、`BIDIR-PIM Tree`は実装しないことになりましたので
次回の対処とさせていただきます。


#Blocbox
##Robert Kameda


地方


Thanks for pointing, fixed.

Strange that Travis/Jenkins didn't complain, and they build dynamic too


@raghav4494, for your state diagram, can you make sure each transition has a labeled event showing how the next state is reached?


contrib/codeanalysis/runcppcheck.sh: line 9: ../cppcheck-1.66/cppcheck: No such file or directory


MPLSが複数存在する`EvpnMacIPAdvertisementNLRI`より流用してしまっていました。
`EvpnEthernetAutoDiscoveryNLRI`が元となるように修正します。


k


Использовать id плохая практика. Общепринято всегда использовать названия классов (.header, .selected и т.д.). Чуть освоишься верстку -  и начнешь по BEM верстать) Методология верстки разработанная Яндексом, очень удобная.


This comparison should be made with passed min and max iterations. Also I think the default constructor of nhMandelbrotOrbit class should only take maxIterations and minIterations can be initialized to 0. A setOrbit function can be used to override these values. This idea is motivated from the fact that all instances of this class only require maxiteration limit to be able to distinguish points lying inside/outside mandelbrot set. The min iteration is just a control parameter to be able to choose points from very specific zones in the complex plane.


AddRentActivity


Числа без измерения для указания высот, размеров шрифтов и т.д. не ипсользуются. Я даже не знаю - работают ли такие стили) Чаще всего используются проценты или пиксели. font-weight: 100px;  в данном случае


may be yes but i don't know why you use https


Число без измерения


please update this information


К тегам применять стили плохая практика. Мало ли какие h3 заголовки и где встретиться могут - а потом гадай почему отображаются не так как нужно.


r+


saw approval from jedmccaleb
at https://github.com/vogel/stellar-core/commit/16c49661a4d06b4dc4443d87541c4560d41006e4


merging vogel/stellar-core/disallow-trusting-self = 16c49661 into auto


vogel/stellar-core/disallow-trusting-self = 16c49661 merged ok, testing candidate = 2e433799


Используй явное название цвета (white или black, все время путаю что значит #fff)


Выглядит страшно))


Опять стили применительно к тегу(


Name such methods onAddApartmentClick


Why not increment every time, and just fail on the first try?


And then check tries==2


Пробел после точки с запятой забыла)) Пока следи так, потом выучишь инструмент, который автоматом отступы и пробелы добавляет и удаляет в соответствии с code style


:) nemoj korisiti nas jezik u davanju naziva varijablama / objektima i sl :) vjezbaj engleski


nemoj korisiti nas jezik u davanju naziva varijablama / objektima i sl :) vjezbaj engleski


Ты поняла, думаю))


Thanks, much better test!

Minor bits, but LGTM besides.


мой сайт/мой сайт.html

`class="selected"`. Не используй id, тем более для флагов (индикаторов состояния)


мой сайт/мой сайт.html

Лучше указывать относительный пути: `href="./puzzles.html"`


nije bas najpametnije ovako stavljati ja obicno napravim klasu za boje:
`extension UIColor {`
   ` class func DarkPurple() -> UIColor {`
`        return UIColor(red: 117.0 / 255.0, green: 27.0 / 255.0, blue: 109.0 / 255.0, alpha: 1.0)`
`    }`
 ``
  `  class func MediumRedViolet() -> UIColor {`
     `   return UIColor(red: 182.0 / 255.0, green: 37.0 / 255.0, blue: 115.0 / 255.0, alpha: 1.0)`
  `  }`


мой сайт/мой сайт.html

Лишний пробел между < и a


мой сайт/мой сайт.html


Fixed with  09b8bb9


@mbrodala : don't you mean change_table?


Google assistant not working on newer version 6.6.16 with build #698 and #699


мой сайт/мой сайт.html

Название файла не информативно. Лучше `src="./img/myPhoto.png"`
А вот то что изображения в папку img положила отдельное - это плюс)


Methods that do i/o to DB should not be invoked in ui thread. Use loaders or some other way to do so in background.


You provided one of the checksums, we need two...


@fscottfoti how do I get a new start of 2010 table with this change?


Хах) Не нашел font-face поиском)) А он вон куда закрался)) Заглядывала по этой ссылке? Как подгружаются шрифты?


da li je ovo moglo sa samo jednim segmented controll?


It would be nice to give a reason for such reverts in general.


Ui blocking methods invocation!


develop (evanweaver) - x86_64-MacOS-10.10-clang: OK (2394 of 2452 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-97.63%25-yellow.svg)


Done


I think this is a bug, in that we are removing the configuration option for the server's protocol?


В звездочку, на будущее, очень аккуратно надо добавлять стили. Потому что они на все теги распространяются. Такие стили как у тебя допустимы. Обычно подобные глобальные стили в отдельный файл reset.css выносятся


Инлайновые стили использовать - очень плохая практика. Вынести в файл.


Nate Lust asks:
> I don't see how the getatter can take anything other than name. More over, you are returning a function object that can generate an attribute, but not an attribute itself. It is not clear to me how this works, or what the indented purpose is. If this is indeed the correct behavior, can you add more of a explanation to the documentation on how it works, and why this happens.

It works when you've subclassed the DisplayImpl object;  see for example display_ginga which exposes a get_viewer() method.  The getattr returns the object, but we still need to call it with the desired arguments.