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1  README.md


[markdown-cheatsheet-online (1).pdf](https://github.com/juanluis33/-sturdy-octo-funicular./files/567280/markdown-cheatsheet-online.1.pdf)


Let's say we have a new data-source added beyond usgs-dv or -iv. So, we create additional fetchers in the third_party section. In that case, all the logic of that addition should be added here (and maybe in other places) as well, making it harder. It would be easier if these functionalities could be separated completely to make sure the addition of a new source only needs the update in a single file/place of the package.

This could be done by having the appropriate information added in the class attributes on one side, to make sure the other side understands. On the other hand, cfr. #10, I do not know if the panel with different options is appropriate and not exploiting the Pandas opportunities. Let's say I want to derive (or I get a data source with) the monthly/seasonly/yearly/quarterly mean/median/std/75quantile/... => Should we recreate all these options inside the panel or could we reuse the fact that pandas provides all this type of recaclulation?


Please take JsCollectionsTests changes from here: https://github.com/JetBrains/kotlin/commit/2e76aa685d9e845d4053f021e3a262fceec655db#diff-01c7ca6109a7f086f7020836ca995941


valaminek a négyzetét így tudod megadni: System.out.println(Math.pow(r,2) * Math.PI); (tehát r to the power of 2)


indeed rather semantically confusing... `graph` maybe `hydrographplot`? ;-)


Hi, Supriya! I wanted to check in -- how is this going?


Returning a double on the FPU stack should mean that the `FpuStackDelta` member of the `FunctionType` has the value 1 - can you confirm this?


Please run `make package/iproute2/clean` and `rm -r tmp/` and see if the error persists.


én ezt így csináltam:
public class Workshop14 {
    public static void main(String[] args) {
        String l = "Java is awesome!";
        // Tell the 2nd letter of the word

        char secChar = l.charAt(1);

        System.out.println(secChar);
    }
}


Also it might be easier to relayout generated stdlib sources automatically, when we face the restriction to have single file for single platform later.


after delete you should point the pointers to null to avoid dangling pointers
count_ptr = NULL;
numbers = NULL;


nvm this, just a type while going over oshadha's code


![](https://github.trello.services/images/mini-trello-icon.png) [Visualização dos cortes de fluxo de ar](https://trello.com/c/p9hz1pFA/56-visualizacao-dos-cortes-de-fluxo-de-ar)


ㅠㅠ 새벽엔 자여


This is why I would rather keep stations inside a single DataFrame as columns. Then we gain from the fact that Pandas is already providing this
* `new_study.hydrographplot()` would plot all stations
* `new_study['01585200'].hydrographplot()` or `new_study.get_station('01585200').hydrographplot()` would plot only the required station


you should not delete the "int main() { " function


ez meglepően egyszerű: System.out.println(n + (a + b));
és így nem kell plusz variable


check - the build in progress ...


ez király, egyszerűbb, mint ahogy én csináltam


Should move this to the displayError function, no reason just to print errors here and not in the catch block.


If you want to experiment with this,
you can simply change the psqt.cpp and run as SPRT[0, 4]

Currently, the knight value on square A1 is S(-143, -97) (will automatically be the same for H1)
and S(-54,-68) for the Bishop  (will automatically be the same for H1)


Perhaps convert all `ArrayList` instances to primitive arrays? Perhaps, there is a bug that leads to the OOM. Perhaps all the recursion.


then use !$state...


We now use named icons rather than stock items in Gramps.


I would get this *smart* by adding rules which check the pandas dataframe existing properties (frequency,...) when trying to perform the function on a dataframe input.


исправила


убрала


ohh my bad i just found it sorry


Oh, the return argument of modify_double is set to void at https://github.com/uxmal/reko/blob/master/subjects/PE-x86/VCExeSample/decl.xml. Sorry


@citibeth I agree that the lack of standardization  is an issue (even this small document uses non-standard Markdown!) and I may switch to reStructuredText later.  Thanks for the input!


A noteworthy snippet from the doc section on [meta predicates](http://www.swi-prolog.org/pldoc/man?section=metapred):

```
Note that the helper predicate maplist_/3 does not need to be declared as a meta-predicate
because the maplist/3 wrapper already ensures that Goal is qualified as <module>:Goal.
See the description of meta_predicate/1 for details.
```

So it would appear that the extra meta predicate declarations normally are not necessary. One exception would probably be if the auxiliary predicates need to be called in isolation internally throughout the code. Either way, it doesn't really do damage to include the extra declarations; I just thought I'd cite this part of the documentation for informational purposes.


> Your use of getProject() is risky, but it would be okay if it didn't let any uncaptured state to pass through.

Hmm, could you explain to me what you mean by "uncaptured state"? I admit I'm not familiar with the term.

> The problem is that for -SNAPSHOT, different libraries will be resolved over time, based on the repositories which are passed in through that project().

I... think I understand what you mean here, but I'm not 100% sure, so I wonder if you could confirm my understanding for me? I'll sum up what I understand below, and if you could correct me where my understanding is mistaken, then I would really appreciate it. :)

'The problem is that -SNAPSHOT refers to a "version" of google-java-format which changes constantly, because it tracks the ever-changing `master` branch of the google-java-format Git repository. Therefore, if the user elects to use -SNAPSHOT, then using just the version string "SNAPSHOT" as the "key" is not good enough, and if we can't find a way of distinguishing one -SNAPSHOT version from another, then we may have to give up doing incremental builds with -SNAPSHOT altogether.'


Nice approach!


Message should read "Fix bug when no 'ignore' option was given"


Good thinking but just FYI, we'll probably do this as a patch (unless you want to wait until Julia 0.6 is released).


Thanks :+1:


è la vecchiaia


Just so you know, calling `values()` on an enum can be quite slow because it reconstructs the array every time, so you might want to cache `values()` somewhere and use that instead, at least in parts of the code that get called very frequently.


Debugged this, and figured it out. I was missing some curly brackets.


few complications but nice work 👍


I read that discussion but I still don't get why we shouldn't have python27Full alias.


I'm +1 for keeping python27Full for one release cycle.


Oh you're right! (I didn't think of that as it was this way when I first started committing)


Vezi că cu merge-ul ăsta ai introdus o grămadă de conflicte nerezolvate în niște clase din zona de Java.


after deleting you shuld point the pointer to null
pointer = NULL;


![](https://github.trello.services/images/mini-trello-icon.png) [Pagina de listare a unei categorii](https://trello.com/c/pkTHbV0N/19-pagina-de-listare-a-unei-categorii)


Hmm wieso sehe ich das im dev noch nicht? ist das in irgendeinen der offenen prs gepusht?


*bildet

whatever


No error, but program cannot run. "Complete" command should work, but don't know how to implement with the UI.


I'm in the process of updating to curl 7.51.0 and including an embedded version of OpenSSL, stay tuned, hoping to get it done within the week!


Hmmm... git is full of misteries. Le poți revertui tu te rog la versiunea corectă? Ai șanse mai mari decât mine să o faci bine. O să încerc să fiu mai atent pe viitor.


AddEio2Table (JasonGlazer) - x86_64-MacOS-10.9-clang: OK (1769 of 1769 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg)


It would be nice to have additional options for number of spaces to indent and Unicode support.


Also started reformatting occurrences method


(it was me)


This should also have the often-used `separators=(',', ': ')` argument to prevent trailing whitespace after commas.


[inst/extdata/exMatrix.R:4:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
exMatrix <- matrix(rnorm(10e4), ncol = 20)
^~~~~~~~
```
[inst/extdata/exMatrix.R:5:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
rownames(exMatrix) <- paste0("GENE", seq_len(nrow(exMatrix)))
         ^~~~~~~~
```
[inst/extdata/exMatrix.R:5:51:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
rownames(exMatrix) <- paste0("GENE", seq_len(nrow(exMatrix)))
                                                  ^~~~~~~~
```
[inst/extdata/exMatrix.R:6:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
colnames(exMatrix) <- paste0("SampleID", seq_len(ncol(exMatrix)))
         ^~~~~~~~
```
[inst/extdata/exMatrix.R:6:55:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
colnames(exMatrix) <- paste0("SampleID", seq_len(ncol(exMatrix)))
                                                      ^~~~~~~~
```
[inst/extdata/exMatrix.R:8:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
format(object.size(exMatrix), unit = "Mb")
                   ^~~~~~~~
```
[inst/extdata/exMatrix.R:9:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
head(exMatrix)
     ^~~~~~~~
```
[inst/extdata/exMatrix.R:11:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L11) *style:* **Variable and function names should be all lowercase.**
```r
h5save(exMatrix,
       ^~~~~~~~
```
[inst/extdata/exMatrix.R:17:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L17) *style:* **Variable and function names should be all lowercase.**
```r
DelayedArray(HDF5Dataset(file = file.path(fpath, "exMatrix.h5"),
^~~~~~~~~~~~
```
[inst/extdata/exMatrix.R:20:3:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L20) *style:* **Commented code should be removed.**
```r
# file.remove(file.path(fpath, "exMatrix.h5"))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/exMatrix.R:21:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/extdata/exMatrix.R#L21) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/scripts/ExperimentList-Ex.R:5:39:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L5) *style:* **Put spaces around all infix operators.**
```r
arraydat <- matrix(seq(101, 108), ncol=4,
                                     ~^~
```
[inst/scripts/ExperimentList-Ex.R:7:62:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
                     c("ENST00000294241", "ENST00000355076"),
                                                             ^
```
[inst/scripts/ExperimentList-Ex.R:11:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
  slope53 = rnorm(4),
                     ^
```
[inst/scripts/ExperimentList-Ex.R:12:58:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
  row.names = c("array1", "array2", "array3", "array4")),
                                                         ^
```
[inst/scripts/ExperimentList-Ex.R:14:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L14) *style:* **Put spaces around all infix operators.**
```r
exprdat <- Biobase::ExpressionSet(assayData=arraydat, phenoData=arraypdat)
                                          ~^~
```
[inst/scripts/ExperimentList-Ex.R:14:64:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L14) *style:* **Put spaces around all infix operators.**
```r
exprdat <- Biobase::ExpressionSet(assayData=arraydat, phenoData=arraypdat)
                                                              ~^~
```
[inst/scripts/ExperimentList-Ex.R:23:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- list(exprdat, methyldat)
^~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:24:7:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
names(ExpList) <- c("Affy", "Methyl450k")
      ^~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:25:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
myExperimentList <- ExperimentList(ExpList)
^~~~~~~~~~~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:25:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/ExperimentList-Ex.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
myExperimentList <- ExperimentList(ExpList)
                                   ^~~~~~~
```
[inst/scripts/getHits-Ex.R:6:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/getHits-Ex.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
getHits(myMultiAssayExperiment, gr1)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[inst/scripts/listToMap-Ex.R:4:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/listToMap-Ex.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
mySampleMap <- listToMap(mylist)
^~~~~~~~~~~
```
[inst/scripts/listToMap-Ex.R:7:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/listToMap-Ex.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
mylist <- mapToList(mySampleMap)
                    ^~~~~~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
             ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
                      ^~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:9:7:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
names(ExpList)[3] <- "CNVgistic"
      ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:15:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
pDat <- data.frame(sex = c("M", "F", "M", "F"),
^~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:20:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
myMultiAssayExperiment <- MultiAssayExperiment(experiments = ExpList,
^~~~~~~~~~~~~~~~~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:20:62:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
myMultiAssayExperiment <- MultiAssayExperiment(experiments = ExpList,
                                                             ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:21:56:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
                                               pData = pDat,
                                                       ^~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:22:60:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/MultiAssayExperiment-Ex.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
                                               sampleMap = mySampleMap)
                                                           ^~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:2:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/RangedRaggedAssay-Ex.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
library(GenomicRanges)
        ^~~~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:8:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/RangedRaggedAssay-Ex.R#L8) *style:* **Put spaces around all infix operators.**
```r
          ranges = IRanges(c(58493000, 3), width=9000),
                                               ~^~
```
[inst/scripts/RangedRaggedAssay-Ex.R:15:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/RangedRaggedAssay-Ex.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
grl <- GRangesList("gr1" = gr1, "gr2" = gr2, "gr3" = gr3)
       ^~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:19:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/RangedRaggedAssay-Ex.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
myRRA <- RangedRaggedAssay(grl)
^~~~~
```
[inst/scripts/sampleMap-Ex.R:21:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/inst/scripts/sampleMap-Ex.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
mySampleMap <- listToMap(mylist)
^~~~~~~~~~~
```
[R/API.R:1:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L1) *style:* **Variable and function names should be all lowercase.**
```r
.cleanC = function(x) gsub(".__C__", "", x)
^~~~~~~
```
[R/API.R:1:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L1) *style:* **Use <-, not =, for assignment.**
```r
.cleanC = function(x) gsub(".__C__", "", x)
        ^
```
[R/API.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.cleanT = function(x) gsub(".__T__", "", x)
^~~~~~~
```
[R/API.R:2:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L2) *style:* **Use <-, not =, for assignment.**
```r
.cleanT = function(x) gsub(".__T__", "", x)
        ^
```
[R/API.R:26:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
        .apiDash()
        ^~~~~~~~
```
[R/API.R:36:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
.packageAPI <- function(packname="MultiAssayExperiment") {
^~~~~~~~~~~
```
[R/API.R:37:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L37) *style:* **Use <-, not =, for assignment.**
```r
    ns = getNamespace(packname)
       ^
```
[R/API.R:38:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
    nsElements = ls(ns, all.names = TRUE)
    ^~~~~~~~~~
```
[R/API.R:38:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L38) *style:* **Use <-, not =, for assignment.**
```r
    nsElements = ls(ns, all.names = TRUE)
               ^
```
[R/API.R:39:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
    ^~~~
```
[R/API.R:39:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L39) *warning:* **local variable ‘nsNS’ assigned but may not be used**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
    ^~~~
```
[R/API.R:39:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L39) *style:* **Use <-, not =, for assignment.**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
         ^
```
[R/API.R:40:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L40) *style:* **Use <-, not =, for assignment.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
            ^
```
[R/API.R:40:15:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
              ^~~~~~~
```
[R/API.R:40:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
                                     ^~~~~~~~~~
```
[R/API.R:40:55:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L40) *style:* **Put spaces around all infix operators.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
                                                     ~^~
```
[R/API.R:41:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L41) *style:* **Use <-, not =, for assignment.**
```r
    todrop = sapply(classes, function(x)extends(x, "language"))
           ^
```
[R/API.R:42:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L42) *style:* **Use <-, not =, for assignment.**
```r
    if (any(todrop)) classes = classes[-which(todrop)]
                             ^
```
[R/API.R:43:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
    ^~~~~~~~~~~~
```
[R/API.R:43:18:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L43) *style:* **Use <-, not =, for assignment.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                 ^
```
[R/API.R:43:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                   ^~~~~~~
```
[R/API.R:43:58:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                                                         ^~~~~~~~~~
```
[R/API.R:44:53:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L44) *style:* **Put spaces around all infix operators.**
```r
                                               value=TRUE),
                                                   ~^~
```
[R/API.R:45:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L45) *style:* **Put spaces around all infix operators.**
```r
                                value=TRUE))
                                    ~^~
```
[R/API.R:46:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
    ^~~~~~~~~~~~~
```
[R/API.R:46:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L46) *style:* **Use <-, not =, for assignment.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                  ^
```
[R/API.R:46:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                    ^~~~~~~
```
[R/API.R:46:59:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                                                          ^~~~~~~~~~
```
[R/API.R:47:54:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L47) *style:* **Put spaces around all infix operators.**
```r
                                                value=TRUE),
                                                    ~^~
```
[R/API.R:48:39:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L48) *style:* **Put spaces around all infix operators.**
```r
                                 value=TRUE, invert=TRUE))
                                     ~^~
```
[R/API.R:48:52:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L48) *style:* **Put spaces around all infix operators.**
```r
                                 value=TRUE, invert=TRUE))
                                                  ~^~
```
[R/API.R:49:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L49) *style:* **Use <-, not =, for assignment.**
```r
    Mcmeths = lapply(classes, function(x) utils::methods(class=x))
            ^
```
[R/API.R:49:63:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L49) *style:* **Put spaces around all infix operators.**
```r
    Mcmeths = lapply(classes, function(x) utils::methods(class=x))
                                                             ~^~
```
[R/API.R:50:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L50) *style:* **Use <-, not =, for assignment.**
```r
    names(Mcmeths) = classes
                   ^
```
[R/API.R:51:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L51) *style:* **Commented code should be removed.**
```r
    #list(nsElements = nsElements, nsNS = nsNS, classes=classes, cmeths=cmeths)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/API.R:52:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
               ~^~
```
[R/API.R:52:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                ~^~
```
[R/API.R:52:56:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                                      ~^~
```
[R/API.R:52:57:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L52) *style:* **Variable and function names should be all lowercase.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                                        ^~~~~~~~~~~~
```
[R/API.R:53:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L53) *style:* **Put spaces around all infix operators.**
```r
         TmethsWithout=TmethsWithout)
                     ~^~
```
[R/API.R:53:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L53) *style:* **Variable and function names should be all lowercase.**
```r
         TmethsWithout=TmethsWithout)
                       ^~~~~~~~~~~~~
```
[R/API.R:56:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L56) *style:* **Variable and function names should be all lowercase.**
```r
.apiDash <- function() {
^~~~~~~~
```
[R/API.R:69:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L69) *style:* **Commented code should be removed.**
```r
      #        sliderInput("slider", "Number of observations:", 1, 100, 50)
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/API.R:82:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L82) *style:* **Put spaces around all infix operators.**
```r
          width=9
              ~^~
```
[R/API.R:90:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L90) *style:* **Use <-, not =, for assignment.**
```r
    getconts = shiny::reactive( {
             ^
```
[R/API.R:91:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L91) *style:* **Use <-, not =, for assignment.**
```r
      papi = .packageAPI( input$packname )
           ^
```
[R/API.R:91:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
      papi = .packageAPI( input$packname )
             ^~~~~~~~~~~
```
[R/API.R:92:40:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L92) *style:* **Put spaces around all infix operators.**
```r
      list(classDF = data.frame(classes=papi$classes),
                                      ~^~
```
[R/API.R:93:42:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L93) *style:* **Put spaces around all infix operators.**
```r
           methsInDF = data.frame(methsIn=papi$TmethsWithin),
                                        ~^~
```
[R/API.R:93:48:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
           methsInDF = data.frame(methsIn=papi$TmethsWithin),
                                               ^~~~~~~~~~~~
```
[R/API.R:94:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L94) *style:* **Put spaces around all infix operators.**
```r
           methsOutDF = data.frame(methsOut=papi$TmethsWithout))
                                          ~^~
```
[R/API.R:94:50:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L94) *style:* **Variable and function names should be all lowercase.**
```r
           methsOutDF = data.frame(methsOut=papi$TmethsWithout))
                                                 ^~~~~~~~~~~~~
```
[R/API.R:96:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L96) *style:* **Use <-, not =, for assignment.**
```r
    output$ls1 = shiny::renderTable( getconts()$classDF )
               ^
```
[R/API.R:96:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L96) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls1 = shiny::renderTable( getconts()$classDF )
                                                ^~~~~~~
```
[R/API.R:97:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L97) *style:* **Use <-, not =, for assignment.**
```r
    output$ls2 = shiny::renderTable( getconts()$methsInDF )
               ^
```
[R/API.R:97:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L97) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls2 = shiny::renderTable( getconts()$methsInDF )
                                                ^~~~~~~~~
```
[R/API.R:98:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L98) *style:* **Use <-, not =, for assignment.**
```r
    output$ls3 = shiny::renderTable( getconts()$methsOutDF )
               ^
```
[R/API.R:98:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/API.R#L98) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls3 = shiny::renderTable( getconts()$methsOutDF )
                                                ^~~~~~~~~~
```
[R/assay-methods.R:50:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L50) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- as.character(ranges)
            ^~~~~~~~
```
[R/assay-methods.R:52:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L52) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- names(ranges)
            ^~~~~~~~
```
[R/assay-methods.R:55:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L55) *style:* **Variable and function names should be all lowercase.**
```r
        rowNames <- rownames(x)
        ^~~~~~~~
```
[R/assay-methods.R:57:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L57) *style:* **Variable and function names should be all lowercase.**
```r
            rangeNames <- unique(as.character(
            ^~~~~~~~~~
```
[R/assay-methods.R:59:31:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
            if (length(unique(rowNames)) != length(rangeNames))
                              ^~~~~~~~
```
[R/assay-methods.R:59:52:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
            if (length(unique(rowNames)) != length(rangeNames))
                                                   ^~~~~~~~~~
```
[R/assay-methods.R:61:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L61) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- rangeNames
            ^~~~~~~~
```
[R/assay-methods.R:61:25:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L61) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- rangeNames
                        ^~~~~~~~~~
```
[R/assay-methods.R:65:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L65) *style:* **Variable and function names should be all lowercase.**
```r
    newMatrix <- do.call(cbind, lapply(seq_along(x), function(j, obj) {
    ^~~~~~~~~
```
[R/assay-methods.R:72:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L72) *style:* **Variable and function names should be all lowercase.**
```r
    colnames(newMatrix) <- colnames(x)
             ^~~~~~~~~
```
[R/assay-methods.R:73:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L73) *style:* **Variable and function names should be all lowercase.**
```r
    rownames(newMatrix) <- rowNames
             ^~~~~~~~~
```
[R/assay-methods.R:73:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L73) *style:* **Variable and function names should be all lowercase.**
```r
    rownames(newMatrix) <- rowNames
                           ^~~~~~~~
```
[R/assay-methods.R:74:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L74) *style:* **Variable and function names should be all lowercase.**
```r
    return(newMatrix)
           ^~~~~~~~~
```
[R/assay-methods.R:87:33:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/assay-methods.R#L87) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    lapply(x, FUN = function(y) {assay(y)})
                                ^
```
[R/ExperimentList-class.R:1:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L1) *style:* **Commented code should be removed.**
```r
## Helper functions for check non-NULL rownames
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.getRowNamesErr <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:4:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L4) *warning:* **local variable ‘msg’ assigned but may not be used**
```r
        msg <- paste(" rownames in", class(object), "are NULL")
        ^~~
```
[R/ExperimentList-class.R:10:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L10) *style:* **Variable and function names should be all lowercase.**
```r
.getColNamesErr <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:12:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L12) *warning:* **local variable ‘msg’ assigned but may not be used**
```r
        msg <- paste(" colnames in", class(object), "are NULL")
        ^~~
```
[R/ExperimentList-class.R:19:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
.createRownames <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:28:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
.PrepElements <- function(object) {
^~~~~~~~~~~~~
```
[R/ExperimentList-class.R:29:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L29) *style:* **Commented code should be removed.**
```r
    ## use is() to exclude RangedRaggedAssay
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:34:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
        object <- .createRownames(object)
                  ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:39:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L39) *style:* **Commented code should be removed.**
```r
### ==============================================
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:41:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L41) *style:* **Commented code should be removed.**
```r
### ----------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:59:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
.ExperimentList <- setClass("ExperimentList", contains = "SimpleList")
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:61:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L61) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:83:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
    x <- lapply(x, .PrepElements)
                   ^~~~~~~~~~~~~
```
[R/ExperimentList-class.R:84:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L84) *style:* **Variable and function names should be all lowercase.**
```r
    .ExperimentList(S4Vectors::SimpleList(x))
    ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:90:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L90) *style:* **Put spaces around all infix operators.**
```r
    x <- structure(list(), .Names=character())
                                ~^~
```
[R/ExperimentList-class.R:91:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
    .ExperimentList(S4Vectors::SimpleList(x))
    ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:94:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L94) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:99:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L99) *style:* **Variable and function names should be all lowercase.**
```r
.getMethErr <- function(object) {
^~~~~~~~~~~
```
[R/ExperimentList-class.R:100:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L100) *style:* **Variable and function names should be all lowercase.**
```r
    supportedMethods <- c("colnames", "rownames", "[", "dim")
    ^~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:101:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    methErr <- which(!sapply(supportedMethods, function(x) {
    ^~~~~~~
```
[R/ExperimentList-class.R:101:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    methErr <- which(!sapply(supportedMethods, function(x) {
                             ^~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:104:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L104) *style:* **Variable and function names should be all lowercase.**
```r
    if (any(methErr)) {
            ^~~~~~~
```
[R/ExperimentList-class.R:105:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
        unsupported <- names(methErr)
                             ^~~~~~~
```
[R/ExperimentList-class.R:114:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L114) *style:* **Commented code should be removed.**
```r
## 1.i. Check that [, colnames, rownames and dim methods are possible
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:115:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L115) *style:* **Variable and function names should be all lowercase.**
```r
.checkMethodsTable <- function(object) {
^~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:118:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L118) *style:* **Variable and function names should be all lowercase.**
```r
        coll_err <- .getMethErr(object[[i]])
                    ^~~~~~~~~~~
```
[R/ExperimentList-class.R:132:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L132) *style:* **Variable and function names should be all lowercase.**
```r
.checkExperimentListNames <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:135:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
        rowname_err <- .getRowNamesErr(object[[i]])
                       ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:136:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
        colname_err <- .getColNamesErr(object[[i]])
                       ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:155:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L155) *style:* **Variable and function names should be all lowercase.**
```r
.validExperimentList <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:157:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L157) *style:* **Variable and function names should be all lowercase.**
```r
        c(.checkMethodsTable(object),
          ^~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:158:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
          .checkExperimentListNames(object))
          ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:162:43:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L162) *style:* **Variable and function names should be all lowercase.**
```r
S4Vectors::setValidity2("ExperimentList", .validExperimentList)
                                          ^~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:179:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L179) *style:* **Only use double-quotes.**
```r
    cat(sprintf('%s', o_class),
                ^~~~
```
[R/ExperimentList-class.R:181:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L181) *style:* **Only use double-quotes.**
```r
        paste0(o_len, ':'),
                      ^~~
```
[R/ExperimentList-class.R:182:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/ExperimentList-class.R#L182) *style:* **Only use double-quotes.**
```r
        sprintf('\n [%i] %s: %s with %s rows and %s columns',
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/hasAssay.R:19:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
        applyFun <- experiments
        ^~~~~~~~
```
[R/hasAssay.R:21:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
        applyFun <- ExperimentList
        ^~~~~~~~
```
[R/hasAssay.R:23:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- vapply(findMethods("assay")@signatures,
    ^~~~~~~~~~~~
```
[R/hasAssay.R:26:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- unique(validClasses)
    ^~~~~~~~~~~~
```
[R/hasAssay.R:26:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- unique(validClasses)
                           ^~~~~~~~~~~~
```
[R/hasAssay.R:27:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    all(vapply(applyFun(object), FUN = function(element) {
               ^~~~~~~~
```
[R/hasAssay.R:28:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/hasAssay.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
        any(vapply(validClasses, FUN = function(cl) {
                   ^~~~~~~~~~~~
```
[R/listToMap.R:34:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/listToMap.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- do.call(S4Vectors::rbind, DFmap)
    ^~~~~~
```
[R/listToMap.R:35:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
    ^~~~~~
```
[R/listToMap.R:35:15:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
              ^~~~~~
```
[R/listToMap.R:35:29:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
                            ^~~~~~
```
[R/listToMap.R:36:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/listToMap.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
    return(newMap)
           ^~~~~~
```
[R/mapToList.R:14:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
mapToList <- function(dfmap, assayCol = "assay") {
                             ^~~~~~~~
```
[R/mapToList.R:15:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
    if (!S4Vectors::isSingleString(assayCol))
                                   ^~~~~~~~
```
[R/mapToList.R:17:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L17) *style:* **Variable and function names should be all lowercase.**
```r
    if (!assayCol %in% colnames(dfmap))
         ^~~~~~~~
```
[R/mapToList.R:19:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
    assayColIndex <- which(names(dfmap) == assayCol)
    ^~~~~~~~~~~~~
```
[R/mapToList.R:19:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
    assayColIndex <- which(names(dfmap) == assayCol)
                                           ^~~~~~~~
```
[R/mapToList.R:24:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
    grp <- dfmap[[assayCol]]
                  ^~~~~~~~
```
[R/mapToList.R:26:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L26) *style:* **Put spaces around all infix operators.**
```r
        grp <- factor(grp, levels=unique(grp))
                                ~^~
```
[R/mapToList.R:27:31:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    S4Vectors::split(dfmap[, -assayColIndex], grp)
                              ^~~~~~~~~~~~~
```
[R/mapToList.R:28:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/mapToList.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
}
 ^
```
[R/MultiAssayExperiment-class.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.uniqueSortIdentical <- function(charvec1, charvec2) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:3:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L3) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- list(charvec1, charvec2)
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:4:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- lapply(listInput, function(x) sort(unique(x)))
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:4:25:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- lapply(listInput, function(x) sort(unique(x)))
                        ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:5:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
    return(identical(listInput[[1]], listInput[[2]]))
                     ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:5:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
    return(identical(listInput[[1]], listInput[[2]]))
                                     ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:8:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
.allIn <- function(charvec1, charvec2) {
^~~~~~
```
[R/MultiAssayExperiment-class.R:12:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L12) *style:* **Commented code should be removed.**
```r
### ==============================================
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:14:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L14) *style:* **Commented code should be removed.**
```r
### ----------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:73:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L73) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:80:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
.checkExperimentList <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:101:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
.checkSampleNames <- function(object) {
^~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:102:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L102) *style:* **Variable and function names should be all lowercase.**
```r
    sampMap <- sampleMap(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:103:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L103) *style:* **Variable and function names should be all lowercase.**
```r
    assayCols <- mapToList(sampMap[, c("assay", "colname")])
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:103:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L103) *style:* **Variable and function names should be all lowercase.**
```r
    assayCols <- mapToList(sampMap[, c("assay", "colname")])
                           ^~~~~~~
```
[R/MultiAssayExperiment-class.R:104:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L104) *style:* **Variable and function names should be all lowercase.**
```r
    colNams <- colnames(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:105:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
    ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:105:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
                                   ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:105:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
                                                ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:106:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L106) *style:* **Variable and function names should be all lowercase.**
```r
        identical(sort(columnNames), sort(assayColumns))
                       ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:106:43:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L106) *style:* **Variable and function names should be all lowercase.**
```r
        identical(sort(columnNames), sort(assayColumns))
                                          ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:107:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L107) *style:* **Variable and function names should be all lowercase.**
```r
    }, columnNames = colNams,
                     ^~~~~~~
```
[R/MultiAssayExperiment-class.R:108:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L108) *style:* **Variable and function names should be all lowercase.**
```r
    assayColumns = assayCols)
                   ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:109:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L109) *style:* **Variable and function names should be all lowercase.**
```r
    if (!all(logicResult)) {
             ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:116:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L116) *style:* **Commented code should be removed.**
```r
## 2.i. See setClass above where pData = "DataFrame"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:121:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
.checkSampleMapNames <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:123:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L123) *style:* **Variable and function names should be all lowercase.**
```r
    if (!(.allIn(
          ^~~~~~
```
[R/MultiAssayExperiment-class.R:124:18:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L124) *style:* **Variable and function names should be all lowercase.**
```r
        rownames(pData(object)),
                 ^~~~~
```
[R/MultiAssayExperiment-class.R:136:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
.uniqueNamesInAssays <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:137:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L137) *style:* **Variable and function names should be all lowercase.**
```r
    SampMap <- sampleMap(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:138:29:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L138) *style:* **Variable and function names should be all lowercase.**
```r
    lcheckdups <- mapToList(SampMap[, c("assay", "colname")])
                            ^~~~~~~
```
[R/MultiAssayExperiment-class.R:148:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L148) *style:* **Variable and function names should be all lowercase.**
```r
.validMultiAssayExperiment <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:150:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L150) *style:* **Variable and function names should be all lowercase.**
```r
        c(.checkExperimentList(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:151:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
          .checkSampleMapNames(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:152:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L152) *style:* **Variable and function names should be all lowercase.**
```r
          .uniqueNamesInAssays(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:153:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L153) *style:* **Variable and function names should be all lowercase.**
```r
          .checkSampleNames(object)
          ^~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:158:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
S4Vectors::setValidity2("MultiAssayExperiment", .validMultiAssayExperiment)
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:160:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L160) *style:* **Variable and function names should be all lowercase.**
```r
.hasOldAPI <- function(object) {
^~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:169:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L169) *style:* **Variable and function names should be all lowercase.**
```r
    if (.hasOldAPI(object)) {
        ^~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:170:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L170) *style:* **Variable and function names should be all lowercase.**
```r
        object <- updateObject(object)
                  ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:181:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L181) *style:* **Variable and function names should be all lowercase.**
```r
    c_mp <- class(pData(object))
                  ^~~~~
```
[R/MultiAssayExperiment-class.R:183:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L183) *style:* **Only use double-quotes.**
```r
    cat(sprintf('A %s', o_class),
                ^~~~~~
```
[R/MultiAssayExperiment-class.R:197:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L197) *style:* **Only use double-quotes.**
```r
        sprintf('%s', c_elist), "instance",
                ^~~~
```
[R/MultiAssayExperiment-class.R:198:59:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L198) *style:* **Only use double-quotes.**
```r
        "\n pData() - for the primary/phenotype", sprintf('%s', c_mp),
                                                          ^~~~
```
[R/MultiAssayExperiment-class.R:199:65:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L199) *style:* **Only use double-quotes.**
```r
        "\n sampleMap() - for the sample availability", sprintf('%s', c_sm),
                                                                ^~~~
```
[R/MultiAssayExperiment-class.R:205:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L205) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:252:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L252) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:268:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L268) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:337:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/32d2eef76e8c03eabf08a6021cce7b6703e4c0be/R/MultiAssayExperiment-class.R#L337) *style:* **Variable and function names should be all lowercase.**
```r
.rearrangeMap <- function(sampMap) {
^~~~~~~~~~~~~
```


@chwarr The only difference is that above OutputPath is being set by this file, and the one in your example did not set it. Maybe I should remove that too?


сделано


> I wonder if you could confirm my understanding for me?

You describe the problem perfectly.  `-SNAPSHOT` is inherently unreproducible, so your commit here is a very practical implementation that works the vast majority of the time.

A more complete implementation wouldn't just use the version string as the key, it might use `String version; String jarSha` to store the signature of the jar resolved from maven, in addition to the version.  This is slow, which is the point of `createLazy` - so that this is only done when it is needed.

The problem is that if a user's -SNAPSHOT changes, some of their files will have been formatted by one version of the library, while other files were formatted by a different version.  The CI server would likely always have an empty cache, and would disagree with their local version.

> could you explain to me what you mean by "uncaptured state"?

A pure function is a function that says "these are my inputs", and every time you call that function with the same inputs, you get the exact same output.

In the case of passing -SNAPSHOT, the user might get different output even if they passed the exact same input string and the exact same '1.2-SNAPSHOT`.  That is only possible if the function has some kind of uncaptured state - state which gets into the function which isn't in the arguments.

In this case, the project() (which you're passing without capturing it in the `key` value) holds the URL to the snapshot repository, gradle does a network call to find the latest snapshot version, and *that* is the uncaptured state.  If you let something into the function call which isn't inside of the key, then it might end up being a gateway for inconsistent results.

Spotless 2.x avoids this very hard problem by always running from scratch.  Now that we're going to save results over time, we've got to record every single thing about a rule which might change its output into the key value.


System.out.println(Math.pow (2,c));

//you can write the solution in the print//


need to have what is being passed to this function in ()  looks like it should be the variable for the frame being read


same as ws03


I used to follow this standard in another libs, like http://stackoverflow.com/a/16084844

But I guess it is more complex than the current solution: need some new modules, some additional complex code to import, we should care about py2/py3 compatibility etc.

In the current strategy, although the version is replicated in some places, one simple `find => manual replace` solve the issue.

Also, the replicated thing is an alert to check the document/remember of the "publish routines": 1. test, 2. doc/change log, 3. publish, 4. tag

What do you think?


I am going to remove this backslash, but I might not let you forget about it. ;)


Hi,
Could somebody tell, how to modify MembershipType.cs file (in models) adding the Name.


$_SERVER['HTTP_HOST']

http://php.net/manual/ru/reserved.variables.server.php


this looks good!!


[Common.Internal.props](https://github.com/Microsoft/bond/blob/6b64e56ff86f1fe3ab69488547c1ef0b805afa3c/cs/build/internal/Common.Internal.props#L23) sets the `OutputPath` based on what's being built. We want the same behavior here, otherwise we won't be able to build targeting different frameworks.


HTTP_HOST из SERVER


Do you mean __version__? cool!


"//include option to logout here if not a guest?????"
The login feature doesn't yet store a 'session' and thus the user cannot be logged out. At this point in time the user must always be re-logged-in in order to be authenticated.


After entering <td>@customer.MembershipType.Name</td> Name is an error. Why is that so?


Здесь хотелось бы иметь одну реализацию на все варианты массивов. Как я понял, даже с помощью inline этого не добиться, т.к. все равно создаются inline-функции (`Kotlin.defineInlineFunction`) и stdlib распухает.


Is this safe writing to an instance variable? I guess it makes no difference as it's not production code.


сделано


убрала


Removed auxL_absindex and simplified auxL_optdigest with latest branch commit.


Don't forget to activate this on travis-ci.org. This commit does not have a test run associated.


Strange, I'll look through the code and try to fin the issue


@ltebean hello! I'm wondering why this was commented out. Can we make it optional? uncommenting makes this plugin work better in my specific application. I will make a pull request shortly.


you are not calling this function in main() right now. We want to call this after we get the the list of dcd files, passing it the dcd filename as well as the structure filename.


Are these from the same source and do they have the same license as the old dictionaries? If not, we should add a README and update our own REAMDE.md


you can merge two lines as one `validates :username, :content, presence: true`


Hi!
You can use multiple buildpacks on heroku (https://devcenter.heroku.com/articles/using-multiple-buildpacks-for-an-app). Check this example https://github.com/jincod/AspNet5DemoApp


you are returning the right things! just make sure you accept them in the main() function...

first_frame last_frame= extract_info(struct_filename,traj_filename)


Oops, thanks! 👍


Yo @CharlonTank tu as mis google analytics ? Car en gros t'as pas besoin de faire ca, analytics te le fait en plus d'autres choses bien stylees.


wow great solution, I have struggled with 'if'-s and 'else' in 4 extra lines


It's not :(

Unfortunately not much we can do. CustomEvent constructor doesn't accept anything but the detail field. https://developer.mozilla.org/en-US/docs/Web/API/CustomEvent/CustomEvent


better written as `if params[:username.present?`. the `.presence` method is a fancy way to return nil instead of blank if not present?


Ah yeah that was it ;)


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be careful... what is u here? it needs to be the variable representing the mdanalysis first or last frame... you will have passed it from main


`<% unless current_user %>` will read better. but interesting: you still allow the user to change the username huh


you probably already know it already: the `{` `}` here are optional (you can remove them)


Thanks for the feedback, and I really appreciate the email. I was able to correct the issue and resubmit, so I really appreciate it.

> On Oct 31, 2016, at 10:46 AM, Akinyemi Abayomi Tosin <notifications@github.com> wrote:
>
> GOOD ONE BUT THE CODEBOOK README WAS EXCLUDED AND THE READ ME IS NOT DETAILED ENOUGH
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub, or mute the thread.
>


@mariospr Looks it's beautiful :P


You should only be passing this one trajectory at a time (either first or last) so you don't need both sets of variables to be returned. Instead make one set of generic variables. When they are returned, you can store them as different variables.


super, I also put 4 extra lines of ifs and elses here


OK, Travis reports that the darktable-2.0.x build is broken. However, this commit only experiences a collateral damage by some other GTK related issue.


very nice job passing the `request.original_url` here 💃


On 11/02/2016 06:33 PM, Alex wrote:
>
> I imagine thorsten would.
> Either way, moving the html around to his preference is an easy task. So ill leave it as is for the time being.
>
> Which additional fields are you looking for?
> Port mode
> Password
>
> Any thing else?
> Do we want to store a hash for the password or use plain text?
>

Plain text to start with.
As I just wrote on the chat (https://gitter.im/jeelabs/esp-link) I want to check if I can get something to work based on SSL.

If that works, then I imagine we can talk about storing keys instead of passwords.

So let's work on a simple solution for now.

     Danny

--
Danny Backx - danny.backx@scarlet.be - http://danny.backx.info


I was even thinking about creating an other function just for the first question and input :D but that would have been really "going overboard"


Yes. If you follow the link you will see the old ones there too. They are made by a group of researches from Minho's University. Main page and link to this directory in:
http://natura.di.uminho.pt/wiki/doku.php?id=dicionarios:main
You made need to run that on Google Translator, though.


ack. i'll see if i can fix the shit gtk did again


No, I only display username field if user was not "login". in case just want to enter a quick message :D


you eventually end up with two lines of true


yah, I remember but ... just too familiar with `{}` ✌


you probably just added a response thing here just to test. with `.getScript` usually we can ignore the 2nd argument, but agree they can be quite useful to check (you probably know this already)
```
$.getScript(messagesUrl, function( data, textStatus, jqxhr ) {
  console.log("data ", data);
  console.log("success: ", textStatus);
  console.log("status: ", jqxhr.status); // 200
});
```


unlike js, in ruby this `{}` here and line 7 are unnecessary and so the convention is to not use them


Why do we have a `neg` here anyway? Where is it used?


oh really ? I thought that each line is for individual field . trick learnt 👍


good, I have changed int to double above...


I had the same problem but for some reason it only does it for the transfer i read that this happens when a database is in use so im guessing that it never gets closed somewhere


I have not updated the README file because it only changes one final stop from the pre reform version


Found this: https://gist.github.com/davispuh/6600880


@lrascao  Sweet


AddEio2Table (JasonGlazer) - x86_64-Linux-Ubuntu-14.04-gcc-4.8: OK (1789 of 1789 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg)


Probably right, *if* the first non-blank line has a higher indent.


why extra spaces whyyyyy @arasevic


Yeah, know about argument stuff before, but this is first time I use `.getScript` :D


hmm because you define `div class="messages"` inside the `_messages` partial, this will cause you to have a `.messages` inside another `.messages`. you can use `.replaceWith` instead of `.html` method.

of course another way is to use `_message.html.erb` and render collection of partials instead:

```erb
<div class="messages">
  <%= render @messages %>
</div>
```


For a program this small it's probably overkill, actually.


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Ah yes, whoops didn't even realize the markdown was replaced, `__version__` is the way to go!


Good point, adding another file to do this is annoying. I've used several ways in the past to handle this and never been happy with any of them.  Maybe leaving it as-is is OK.  However, why is the version in the makefile?  That could cut down 1 redundancy.


Thank you! :)
I can now add new projects, but I don't have access token to your Github repo to import project from Github as a whole (with wikis, issues, etc).
So let me better wait when you could be able to import it yourself :)
In any case, this is not an urgent matter.


Test


super glad you did this milestone 7 👍


Oh never mind, the version is in the Makefile for tagging purposes.  Meh, I guess it's OK to leave how it is, no good solution that I can come up with.


AddEio2Table (JasonGlazer) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg)


Hm, ich sehs im aktuellen dev-Zweig.
psilo909 <notifications@github.com> schrieb am Mi. 2. Nov. 2016 um 18:54:

> Hmm wieso sehe ich das im dev noch nicht? ist das in irgendeinen der
> offenen prs gepusht?
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/smarthomeNG/smarthome/commit/fd80c524316d25636ff81e4c6fc76e8dce4fd241#commitcomment-19667352>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AF_w7PVIt8KDf0RKYi4-0id4XtrpfZJFks5q6M5qgaJpZM4KnjXi>
> .
>


hmmm very strange, I used (a+10), but everybody else used a similar method like yours


The end of `freeze` reads:
```coq
dlet a29 := 1%Z in
dlet a30 := cmovne 33554431 (a28 &' 33554431) a29 0 in
dlet a31 := cmovne 67108863 (a27 &' 67108863) a30 0 in
dlet a32 := cmovne 33554431 (a26 &' 33554431) a31 0 in
dlet a33 := cmovne 67108863 (a25 &' 67108863) a32 0 in
dlet a34 := cmovne 33554431 (a24 &' 33554431) a33 0 in
dlet a35 := cmovne 67108863 (a23 &' 67108863) a34 0 in
dlet a36 := cmovne 33554431 (a22 &' 33554431) a35 0 in
...
dlet a35 := cmovne 67108863 (a23 &' 67108863) a34 0 in
dlet a36 := cmovne 33554431 (a22 &' 33554431) a35 0 in
dlet a37 := cmovne 67108863 (a21 &' 67108863) a36 0 in
dlet a38 := cmovne 33554431 (a20 &' 33554431) a37 0 in
dlet a39 := cmovl 67108845 (19 * a28 >> 25 + (a19 &' 67108863)) a38 0 in
dlet a40 := neg 32 a39 in
((a28 &' 33554431 - (a40 &' 33554431))%Z, (a27 &' 67108863 - (a40 &' 67108863))%Z, (a26 &' 33554431 - (a40 &' 33554431))%Z,
(a25 &' 67108863 - (a40 &' 67108863))%Z, (a24 &' 33554431 - (a40 &' 33554431))%Z, (a23 &' 67108863 - (a40 &' 67108863))%Z,
(a22 &' 33554431 - (a40 &' 33554431))%Z, (a21 &' 67108863 - (a40 &' 67108863))%Z, (a20 &' 33554431 - (a40 &' 33554431))%Z,
(19 * a28 >> 25 + (a19 &' 67108863) - (a40 &' 67108845))%Z)
     : GF25519.fe25519 -> GF25519.fe25519
```


Resolves #4


You're welcome!


@arasevic REALLY????


@arasevic who is peer reviewing this code?


resolves #4


![](https://github.trello.services/images/mini-trello-icon.png) [1й отчет. Автоматическая загрузка JSON из гугла в отчеты](https://trello.com/c/YqPWWdk8/1-1-json)


I am just curious why did you choose to put the / sign before the = ?


@it300 This is what I'm thinking for the colors system for notices vs. reports.


I like this solution, it's much clearer then true or false


Resolves #10


@javian I just submitted 2 for php70 and php56 support...I will tell you this was my first commit to a public repo like this so I tried to ensure I followed the docs for homebrew making sure I did everything mentioned.  Any feedback is greatly accepted. Thanks!


Fixes #1  and #2.


gestures are duplicated in Settings/AndroidManifest.xml


What instance variable? `status` is local to the method scope?


Thanks


ja habe den pr nun ja auch gemerged


The second letter of Java is 'V' because 0,1,2


Re-arranging this repository.


Good job, mine is more basic here