[inst/extdata/exMatrix.R:4:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
exMatrix <- matrix(rnorm(10e4), ncol = 20)
^~~~~~~~
```
[inst/extdata/exMatrix.R:5:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
rownames(exMatrix) <- paste0("GENE", seq_len(nrow(exMatrix)))
         ^~~~~~~~
```
[inst/extdata/exMatrix.R:5:51:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
rownames(exMatrix) <- paste0("GENE", seq_len(nrow(exMatrix)))
                                                  ^~~~~~~~
```
[inst/extdata/exMatrix.R:6:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
colnames(exMatrix) <- paste0("SampleID", seq_len(ncol(exMatrix)))
         ^~~~~~~~
```
[inst/extdata/exMatrix.R:6:55:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
colnames(exMatrix) <- paste0("SampleID", seq_len(ncol(exMatrix)))
                                                      ^~~~~~~~
```
[inst/extdata/exMatrix.R:8:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
format(object.size(exMatrix), unit = "Mb")
                   ^~~~~~~~
```
[inst/extdata/exMatrix.R:9:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
head(exMatrix)
     ^~~~~~~~
```
[inst/extdata/exMatrix.R:11:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L11) *style:* **Variable and function names should be all lowercase.**
```r
h5save(exMatrix,
       ^~~~~~~~
```
[inst/extdata/exMatrix.R:17:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L17) *style:* **Variable and function names should be all lowercase.**
```r
DelayedArray(HDF5Dataset(file = file.path(fpath, "exMatrix.h5"),
^~~~~~~~~~~~
```
[inst/extdata/exMatrix.R:20:3:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L20) *style:* **Commented code should be removed.**
```r
# file.remove(file.path(fpath, "exMatrix.h5"))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/exMatrix.R:21:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/extdata/exMatrix.R#L21) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/scripts/ExperimentList-Ex.R:5:39:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L5) *style:* **Put spaces around all infix operators.**
```r
arraydat <- matrix(seq(101, 108), ncol=4,
                                     ~^~
```
[inst/scripts/ExperimentList-Ex.R:7:62:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
                     c("ENST00000294241", "ENST00000355076"),
                                                             ^
```
[inst/scripts/ExperimentList-Ex.R:11:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
  slope53 = rnorm(4),
                     ^
```
[inst/scripts/ExperimentList-Ex.R:12:58:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
  row.names = c("array1", "array2", "array3", "array4")),
                                                         ^
```
[inst/scripts/ExperimentList-Ex.R:14:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L14) *style:* **Put spaces around all infix operators.**
```r
exprdat <- Biobase::ExpressionSet(assayData=arraydat, phenoData=arraypdat)
                                          ~^~
```
[inst/scripts/ExperimentList-Ex.R:14:64:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L14) *style:* **Put spaces around all infix operators.**
```r
exprdat <- Biobase::ExpressionSet(assayData=arraydat, phenoData=arraypdat)
                                                              ~^~
```
[inst/scripts/ExperimentList-Ex.R:23:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- list(exprdat, methyldat)
^~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:24:7:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
names(ExpList) <- c("Affy", "Methyl450k")
      ^~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:25:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
myExperimentList <- ExperimentList(ExpList)
^~~~~~~~~~~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:25:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/ExperimentList-Ex.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
myExperimentList <- ExperimentList(ExpList)
                                   ^~~~~~~
```
[inst/scripts/getHits-Ex.R:6:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/getHits-Ex.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
getHits(myMultiAssayExperiment, gr1)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[inst/scripts/listToMap-Ex.R:4:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/listToMap-Ex.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
mySampleMap <- listToMap(mylist)
^~~~~~~~~~~
```
[inst/scripts/listToMap-Ex.R:7:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/listToMap-Ex.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
mylist <- mapToList(mySampleMap)
                    ^~~~~~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
             ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
                      ^~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:9:7:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
names(ExpList)[3] <- "CNVgistic"
      ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:15:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
pDat <- data.frame(sex = c("M", "F", "M", "F"),
^~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:20:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
myMultiAssayExperiment <- MultiAssayExperiment(experiments = ExpList,
^~~~~~~~~~~~~~~~~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:20:62:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
myMultiAssayExperiment <- MultiAssayExperiment(experiments = ExpList,
                                                             ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:21:56:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
                                               pData = pDat,
                                                       ^~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:22:60:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/MultiAssayExperiment-Ex.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
                                               sampleMap = mySampleMap)
                                                           ^~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:2:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/RangedRaggedAssay-Ex.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
library(GenomicRanges)
        ^~~~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:8:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/RangedRaggedAssay-Ex.R#L8) *style:* **Put spaces around all infix operators.**
```r
          ranges = IRanges(c(58493000, 3), width=9000),
                                               ~^~
```
[inst/scripts/RangedRaggedAssay-Ex.R:15:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/RangedRaggedAssay-Ex.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
grl <- GRangesList("gr1" = gr1, "gr2" = gr2, "gr3" = gr3)
       ^~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:19:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/RangedRaggedAssay-Ex.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
myRRA <- RangedRaggedAssay(grl)
^~~~~
```
[inst/scripts/sampleMap-Ex.R:21:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/inst/scripts/sampleMap-Ex.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
mySampleMap <- listToMap(mylist)
^~~~~~~~~~~
```
[R/API.R:1:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L1) *style:* **Variable and function names should be all lowercase.**
```r
.cleanC = function(x) gsub(".__C__", "", x)
^~~~~~~
```
[R/API.R:1:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L1) *style:* **Use <-, not =, for assignment.**
```r
.cleanC = function(x) gsub(".__C__", "", x)
        ^
```
[R/API.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.cleanT = function(x) gsub(".__T__", "", x)
^~~~~~~
```
[R/API.R:2:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L2) *style:* **Use <-, not =, for assignment.**
```r
.cleanT = function(x) gsub(".__T__", "", x)
        ^
```
[R/API.R:26:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
        .apiDash()
        ^~~~~~~~
```
[R/API.R:36:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
.packageAPI <- function(packname="MultiAssayExperiment") {
^~~~~~~~~~~
```
[R/API.R:37:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L37) *style:* **Use <-, not =, for assignment.**
```r
    ns = getNamespace(packname)
       ^
```
[R/API.R:38:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
    nsElements = ls(ns, all.names = TRUE)
    ^~~~~~~~~~
```
[R/API.R:38:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L38) *style:* **Use <-, not =, for assignment.**
```r
    nsElements = ls(ns, all.names = TRUE)
               ^
```
[R/API.R:39:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
    ^~~~
```
[R/API.R:39:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L39) *warning:* **local variable ‘nsNS’ assigned but may not be used**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
    ^~~~
```
[R/API.R:39:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L39) *style:* **Use <-, not =, for assignment.**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
         ^
```
[R/API.R:40:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L40) *style:* **Use <-, not =, for assignment.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
            ^
```
[R/API.R:40:15:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
              ^~~~~~~
```
[R/API.R:40:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
                                     ^~~~~~~~~~
```
[R/API.R:40:55:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L40) *style:* **Put spaces around all infix operators.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
                                                     ~^~
```
[R/API.R:41:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L41) *style:* **Use <-, not =, for assignment.**
```r
    todrop = sapply(classes, function(x)extends(x, "language"))
           ^
```
[R/API.R:42:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L42) *style:* **Use <-, not =, for assignment.**
```r
    if (any(todrop)) classes = classes[-which(todrop)]
                             ^
```
[R/API.R:43:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
    ^~~~~~~~~~~~
```
[R/API.R:43:18:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L43) *style:* **Use <-, not =, for assignment.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                 ^
```
[R/API.R:43:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                   ^~~~~~~
```
[R/API.R:43:58:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                                                         ^~~~~~~~~~
```
[R/API.R:44:53:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L44) *style:* **Put spaces around all infix operators.**
```r
                                               value=TRUE),
                                                   ~^~
```
[R/API.R:45:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L45) *style:* **Put spaces around all infix operators.**
```r
                                value=TRUE))
                                    ~^~
```
[R/API.R:46:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
    ^~~~~~~~~~~~~
```
[R/API.R:46:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L46) *style:* **Use <-, not =, for assignment.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                  ^
```
[R/API.R:46:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                    ^~~~~~~
```
[R/API.R:46:59:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                                                          ^~~~~~~~~~
```
[R/API.R:47:54:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L47) *style:* **Put spaces around all infix operators.**
```r
                                                value=TRUE),
                                                    ~^~
```
[R/API.R:48:39:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L48) *style:* **Put spaces around all infix operators.**
```r
                                 value=TRUE, invert=TRUE))
                                     ~^~
```
[R/API.R:48:52:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L48) *style:* **Put spaces around all infix operators.**
```r
                                 value=TRUE, invert=TRUE))
                                                  ~^~
```
[R/API.R:49:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L49) *style:* **Use <-, not =, for assignment.**
```r
    Mcmeths = lapply(classes, function(x) utils::methods(class=x))
            ^
```
[R/API.R:49:63:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L49) *style:* **Put spaces around all infix operators.**
```r
    Mcmeths = lapply(classes, function(x) utils::methods(class=x))
                                                             ~^~
```
[R/API.R:50:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L50) *style:* **Use <-, not =, for assignment.**
```r
    names(Mcmeths) = classes
                   ^
```
[R/API.R:51:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L51) *style:* **Commented code should be removed.**
```r
    #list(nsElements = nsElements, nsNS = nsNS, classes=classes, cmeths=cmeths)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/API.R:52:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
               ~^~
```
[R/API.R:52:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                ~^~
```
[R/API.R:52:56:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                                      ~^~
```
[R/API.R:52:57:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L52) *style:* **Variable and function names should be all lowercase.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                                        ^~~~~~~~~~~~
```
[R/API.R:53:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L53) *style:* **Put spaces around all infix operators.**
```r
         TmethsWithout=TmethsWithout)
                     ~^~
```
[R/API.R:53:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L53) *style:* **Variable and function names should be all lowercase.**
```r
         TmethsWithout=TmethsWithout)
                       ^~~~~~~~~~~~~
```
[R/API.R:56:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L56) *style:* **Variable and function names should be all lowercase.**
```r
.apiDash <- function() {
^~~~~~~~
```
[R/API.R:69:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L69) *style:* **Commented code should be removed.**
```r
      #        sliderInput("slider", "Number of observations:", 1, 100, 50)
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/API.R:82:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L82) *style:* **Put spaces around all infix operators.**
```r
          width=9
              ~^~
```
[R/API.R:90:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L90) *style:* **Use <-, not =, for assignment.**
```r
    getconts = shiny::reactive( {
             ^
```
[R/API.R:91:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L91) *style:* **Use <-, not =, for assignment.**
```r
      papi = .packageAPI( input$packname )
           ^
```
[R/API.R:91:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
      papi = .packageAPI( input$packname )
             ^~~~~~~~~~~
```
[R/API.R:92:40:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L92) *style:* **Put spaces around all infix operators.**
```r
      list(classDF = data.frame(classes=papi$classes),
                                      ~^~
```
[R/API.R:93:42:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L93) *style:* **Put spaces around all infix operators.**
```r
           methsInDF = data.frame(methsIn=papi$TmethsWithin),
                                        ~^~
```
[R/API.R:93:48:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
           methsInDF = data.frame(methsIn=papi$TmethsWithin),
                                               ^~~~~~~~~~~~
```
[R/API.R:94:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L94) *style:* **Put spaces around all infix operators.**
```r
           methsOutDF = data.frame(methsOut=papi$TmethsWithout))
                                          ~^~
```
[R/API.R:94:50:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L94) *style:* **Variable and function names should be all lowercase.**
```r
           methsOutDF = data.frame(methsOut=papi$TmethsWithout))
                                                 ^~~~~~~~~~~~~
```
[R/API.R:96:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L96) *style:* **Use <-, not =, for assignment.**
```r
    output$ls1 = shiny::renderTable( getconts()$classDF )
               ^
```
[R/API.R:96:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L96) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls1 = shiny::renderTable( getconts()$classDF )
                                                ^~~~~~~
```
[R/API.R:97:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L97) *style:* **Use <-, not =, for assignment.**
```r
    output$ls2 = shiny::renderTable( getconts()$methsInDF )
               ^
```
[R/API.R:97:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L97) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls2 = shiny::renderTable( getconts()$methsInDF )
                                                ^~~~~~~~~
```
[R/API.R:98:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L98) *style:* **Use <-, not =, for assignment.**
```r
    output$ls3 = shiny::renderTable( getconts()$methsOutDF )
               ^
```
[R/API.R:98:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/API.R#L98) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls3 = shiny::renderTable( getconts()$methsOutDF )
                                                ^~~~~~~~~~
```
[R/assay-methods.R:58:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L58) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- as.character(ranges)
            ^~~~~~~~
```
[R/assay-methods.R:60:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L60) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- names(ranges)
            ^~~~~~~~
```
[R/assay-methods.R:63:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L63) *style:* **Variable and function names should be all lowercase.**
```r
        rowNames <- rownames(x)
        ^~~~~~~~
```
[R/assay-methods.R:65:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L65) *style:* **Variable and function names should be all lowercase.**
```r
            rangeNames <- unique(as.character(
            ^~~~~~~~~~
```
[R/assay-methods.R:67:31:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L67) *style:* **Variable and function names should be all lowercase.**
```r
            if (length(unique(rowNames)) != length(rangeNames))
                              ^~~~~~~~
```
[R/assay-methods.R:67:52:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L67) *style:* **Variable and function names should be all lowercase.**
```r
            if (length(unique(rowNames)) != length(rangeNames))
                                                   ^~~~~~~~~~
```
[R/assay-methods.R:69:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L69) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- rangeNames
            ^~~~~~~~
```
[R/assay-methods.R:69:25:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L69) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- rangeNames
                        ^~~~~~~~~~
```
[R/assay-methods.R:73:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L73) *style:* **Variable and function names should be all lowercase.**
```r
    newMatrix <- do.call(cbind, lapply(seq_along(x), function(j, obj) {
    ^~~~~~~~~
```
[R/assay-methods.R:80:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
    colnames(newMatrix) <- colnames(x)
             ^~~~~~~~~
```
[R/assay-methods.R:81:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L81) *style:* **Variable and function names should be all lowercase.**
```r
    rownames(newMatrix) <- rowNames
             ^~~~~~~~~
```
[R/assay-methods.R:81:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L81) *style:* **Variable and function names should be all lowercase.**
```r
    rownames(newMatrix) <- rowNames
                           ^~~~~~~~
```
[R/assay-methods.R:82:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
    return(newMatrix)
           ^~~~~~~~~
```
[R/assay-methods.R:95:33:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/assay-methods.R#L95) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    lapply(x, FUN = function(y) {assay(y)})
                                ^
```
[R/ExperimentList-class.R:1:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L1) *style:* **Commented code should be removed.**
```r
## Helper functions for check non-NULL rownames
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.getRowNamesErr <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:4:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L4) *warning:* **local variable ‘msg’ assigned but may not be used**
```r
        msg <- paste(" rownames in", class(object), "are NULL")
        ^~~
```
[R/ExperimentList-class.R:10:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L10) *style:* **Variable and function names should be all lowercase.**
```r
.getColNamesErr <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:12:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L12) *warning:* **local variable ‘msg’ assigned but may not be used**
```r
        msg <- paste(" colnames in", class(object), "are NULL")
        ^~~
```
[R/ExperimentList-class.R:19:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
.createRownames <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:28:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
.PrepElements <- function(object) {
^~~~~~~~~~~~~
```
[R/ExperimentList-class.R:29:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L29) *style:* **Commented code should be removed.**
```r
    ## use is() to exclude RangedRaggedAssay
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:34:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
        object <- .createRownames(object)
                  ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:39:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L39) *style:* **Commented code should be removed.**
```r
### ==============================================
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:41:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L41) *style:* **Commented code should be removed.**
```r
### ----------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:59:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
.ExperimentList <- setClass("ExperimentList", contains = "SimpleList")
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:61:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L61) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:83:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
    x <- lapply(x, .PrepElements)
                   ^~~~~~~~~~~~~
```
[R/ExperimentList-class.R:84:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L84) *style:* **Variable and function names should be all lowercase.**
```r
    .ExperimentList(S4Vectors::SimpleList(x))
    ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:90:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L90) *style:* **Put spaces around all infix operators.**
```r
    x <- structure(list(), .Names=character())
                                ~^~
```
[R/ExperimentList-class.R:91:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
    .ExperimentList(S4Vectors::SimpleList(x))
    ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:94:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L94) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:99:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L99) *style:* **Variable and function names should be all lowercase.**
```r
.getMethErr <- function(object) {
^~~~~~~~~~~
```
[R/ExperimentList-class.R:100:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L100) *style:* **Variable and function names should be all lowercase.**
```r
    supportedMethods <- c("colnames", "rownames", "[", "dim")
    ^~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:101:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    methErr <- which(!sapply(supportedMethods, function(x) {
    ^~~~~~~
```
[R/ExperimentList-class.R:101:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    methErr <- which(!sapply(supportedMethods, function(x) {
                             ^~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:104:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L104) *style:* **Variable and function names should be all lowercase.**
```r
    if (any(methErr)) {
            ^~~~~~~
```
[R/ExperimentList-class.R:105:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
        unsupported <- names(methErr)
                             ^~~~~~~
```
[R/ExperimentList-class.R:114:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L114) *style:* **Commented code should be removed.**
```r
## 1.i. Check that [, colnames, rownames and dim methods are possible
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:115:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L115) *style:* **Variable and function names should be all lowercase.**
```r
.checkMethodsTable <- function(object) {
^~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:118:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L118) *style:* **Variable and function names should be all lowercase.**
```r
        coll_err <- .getMethErr(object[[i]])
                    ^~~~~~~~~~~
```
[R/ExperimentList-class.R:132:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L132) *style:* **Variable and function names should be all lowercase.**
```r
.checkExperimentListNames <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:135:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
        rowname_err <- .getRowNamesErr(object[[i]])
                       ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:136:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
        colname_err <- .getColNamesErr(object[[i]])
                       ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:155:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L155) *style:* **Variable and function names should be all lowercase.**
```r
.validExperimentList <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:157:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L157) *style:* **Variable and function names should be all lowercase.**
```r
        c(.checkMethodsTable(object),
          ^~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:158:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
          .checkExperimentListNames(object))
          ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:162:43:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L162) *style:* **Variable and function names should be all lowercase.**
```r
S4Vectors::setValidity2("ExperimentList", .validExperimentList)
                                          ^~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:179:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L179) *style:* **Only use double-quotes.**
```r
    cat(sprintf('%s', o_class),
                ^~~~
```
[R/ExperimentList-class.R:181:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L181) *style:* **Only use double-quotes.**
```r
        paste0(o_len, ':'),
                      ^~~
```
[R/ExperimentList-class.R:182:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/ExperimentList-class.R#L182) *style:* **Only use double-quotes.**
```r
        sprintf('\n [%i] %s: %s with %s rows and %s columns',
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/hasAssay.R:19:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
        applyFun <- experiments
        ^~~~~~~~
```
[R/hasAssay.R:21:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
        applyFun <- ExperimentList
        ^~~~~~~~
```
[R/hasAssay.R:23:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- vapply(findMethods("assay")@signatures,
    ^~~~~~~~~~~~
```
[R/hasAssay.R:26:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- unique(validClasses)
    ^~~~~~~~~~~~
```
[R/hasAssay.R:26:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- unique(validClasses)
                           ^~~~~~~~~~~~
```
[R/hasAssay.R:27:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    all(vapply(applyFun(object), FUN = function(element) {
               ^~~~~~~~
```
[R/hasAssay.R:28:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/hasAssay.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
        any(vapply(validClasses, FUN = function(cl) {
                   ^~~~~~~~~~~~
```
[R/listToMap.R:34:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/listToMap.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- do.call(S4Vectors::rbind, DFmap)
    ^~~~~~
```
[R/listToMap.R:35:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
    ^~~~~~
```
[R/listToMap.R:35:15:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
              ^~~~~~
```
[R/listToMap.R:35:29:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
                            ^~~~~~
```
[R/listToMap.R:36:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/listToMap.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
    return(newMap)
           ^~~~~~
```
[R/mapToList.R:14:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
mapToList <- function(dfmap, assayCol = "assay") {
                             ^~~~~~~~
```
[R/mapToList.R:15:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
    if (!S4Vectors::isSingleString(assayCol))
                                   ^~~~~~~~
```
[R/mapToList.R:17:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L17) *style:* **Variable and function names should be all lowercase.**
```r
    if (!assayCol %in% colnames(dfmap))
         ^~~~~~~~
```
[R/mapToList.R:19:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
    assayColIndex <- which(names(dfmap) == assayCol)
    ^~~~~~~~~~~~~
```
[R/mapToList.R:19:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
    assayColIndex <- which(names(dfmap) == assayCol)
                                           ^~~~~~~~
```
[R/mapToList.R:24:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
    grp <- dfmap[[assayCol]]
                  ^~~~~~~~
```
[R/mapToList.R:26:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L26) *style:* **Put spaces around all infix operators.**
```r
        grp <- factor(grp, levels=unique(grp))
                                ~^~
```
[R/mapToList.R:27:31:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    S4Vectors::split(dfmap[, -assayColIndex], grp)
                              ^~~~~~~~~~~~~
```
[R/mapToList.R:28:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/mapToList.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
}
 ^
```
[R/MultiAssayExperiment-class.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.uniqueSortIdentical <- function(charvec1, charvec2) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:3:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L3) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- list(charvec1, charvec2)
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:4:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- lapply(listInput, function(x) sort(unique(x)))
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:4:25:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- lapply(listInput, function(x) sort(unique(x)))
                        ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:5:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
    return(identical(listInput[[1]], listInput[[2]]))
                     ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:5:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
    return(identical(listInput[[1]], listInput[[2]]))
                                     ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:8:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
.allIn <- function(charvec1, charvec2) {
^~~~~~
```
[R/MultiAssayExperiment-class.R:12:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L12) *style:* **Commented code should be removed.**
```r
### ==============================================
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:14:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L14) *style:* **Commented code should be removed.**
```r
### ----------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:73:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L73) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:80:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
.checkExperimentList <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:101:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
.checkSampleNames <- function(object) {
^~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:102:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L102) *style:* **Variable and function names should be all lowercase.**
```r
    sampMap <- sampleMap(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:103:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L103) *style:* **Variable and function names should be all lowercase.**
```r
    assayCols <- mapToList(sampMap[, c("assay", "colname")])
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:103:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L103) *style:* **Variable and function names should be all lowercase.**
```r
    assayCols <- mapToList(sampMap[, c("assay", "colname")])
                           ^~~~~~~
```
[R/MultiAssayExperiment-class.R:104:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L104) *style:* **Variable and function names should be all lowercase.**
```r
    colNams <- colnames(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:105:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
    ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:105:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
                                   ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:105:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
                                                ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:106:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L106) *style:* **Variable and function names should be all lowercase.**
```r
        identical(sort(columnNames), sort(assayColumns))
                       ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:106:43:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L106) *style:* **Variable and function names should be all lowercase.**
```r
        identical(sort(columnNames), sort(assayColumns))
                                          ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:107:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L107) *style:* **Variable and function names should be all lowercase.**
```r
    }, columnNames = colNams,
                     ^~~~~~~
```
[R/MultiAssayExperiment-class.R:108:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L108) *style:* **Variable and function names should be all lowercase.**
```r
    assayColumns = assayCols)
                   ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:109:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L109) *style:* **Variable and function names should be all lowercase.**
```r
    if (!all(logicResult)) {
             ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:116:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L116) *style:* **Commented code should be removed.**
```r
## 2.i. See setClass above where pData = "DataFrame"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:121:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
.checkSampleMapNames <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:123:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L123) *style:* **Variable and function names should be all lowercase.**
```r
    if (!(.allIn(
          ^~~~~~
```
[R/MultiAssayExperiment-class.R:124:18:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L124) *style:* **Variable and function names should be all lowercase.**
```r
        rownames(pData(object)),
                 ^~~~~
```
[R/MultiAssayExperiment-class.R:136:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
.uniqueNamesInAssays <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:137:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L137) *style:* **Variable and function names should be all lowercase.**
```r
    SampMap <- sampleMap(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:138:29:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L138) *style:* **Variable and function names should be all lowercase.**
```r
    lcheckdups <- mapToList(SampMap[, c("assay", "colname")])
                            ^~~~~~~
```
[R/MultiAssayExperiment-class.R:148:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L148) *style:* **Variable and function names should be all lowercase.**
```r
.validMultiAssayExperiment <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:150:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L150) *style:* **Variable and function names should be all lowercase.**
```r
        c(.checkExperimentList(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:151:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
          .checkSampleMapNames(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:152:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L152) *style:* **Variable and function names should be all lowercase.**
```r
          .uniqueNamesInAssays(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:153:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L153) *style:* **Variable and function names should be all lowercase.**
```r
          .checkSampleNames(object)
          ^~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:158:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
S4Vectors::setValidity2("MultiAssayExperiment", .validMultiAssayExperiment)
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:160:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L160) *style:* **Variable and function names should be all lowercase.**
```r
.hasOldAPI <- function(object) {
^~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:169:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L169) *style:* **Variable and function names should be all lowercase.**
```r
    if (.hasOldAPI(object)) {
        ^~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:170:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L170) *style:* **Variable and function names should be all lowercase.**
```r
        object <- updateObject(object)
                  ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:181:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L181) *style:* **Variable and function names should be all lowercase.**
```r
    c_mp <- class(pData(object))
                  ^~~~~
```
[R/MultiAssayExperiment-class.R:183:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L183) *style:* **Only use double-quotes.**
```r
    cat(sprintf('A %s', o_class),
                ^~~~~~
```
[R/MultiAssayExperiment-class.R:197:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L197) *style:* **Only use double-quotes.**
```r
        sprintf('%s', c_elist), "instance",
                ^~~~
```
[R/MultiAssayExperiment-class.R:198:59:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L198) *style:* **Only use double-quotes.**
```r
        "\n pData() - for the primary/phenotype", sprintf('%s', c_mp),
                                                          ^~~~
```
[R/MultiAssayExperiment-class.R:199:65:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L199) *style:* **Only use double-quotes.**
```r
        "\n sampleMap() - for the sample availability", sprintf('%s', c_sm),
                                                                ^~~~
```
[R/MultiAssayExperiment-class.R:205:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L205) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:252:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L252) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:268:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L268) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:337:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/eb72a13ccca9553c88745482f92cca1f9842815d/R/MultiAssayExperiment-class.R#L337) *style:* **Variable and function names should be all lowercase.**
```r
.rearrangeMap <- function(sampMap) {
^~~~~~~~~~~~~
```


Fixed the link to my solution


myllh


Try to use a path.join over here. Its more safer than concat operation for file paths.


This change broke a number of my machines that utilized the old location to export global docker options - I'm in the process of fixing my fleet, but it might be wise to reconsider this change (or symlink the old location)


Why is image_id not set? Is the report card method not validating it properly?


Use `y` instead of `i` as the loop index. Ordinarily for nested loops we would use `i`, `j`, and `k` as indices for general iteration but you've noticed that `x` is a better index already since it tells the reader that the indices are for coordinates instead. It's very helpful to point this out in this case so also do it for the outer loop.


dfgdf


Try to make it more generalized using glob. This is too restrictive.


Thanks for the heads up. Would you mind eventually filing a bug report so we can consider the impact of this change?


@mbevand Thanks! I missed that during the update. We've since updated again with your changes I'll make sure this fix is included.


--Events.CityProductionCompleted.Add(OnCityProductionCompleted);


Why do you need a for loop when you are only saving a single file in each folder ?


Missing definition of `MPIDI_OFI_EP_STX` when `MPIDI_OFI_CONFIG_USE_SCALABLE_ENDPOINTS` is not defined


Dam son


Try to keep arguments name proper instead of just using 'st'.


Hmm, I will admit that I didn't consider that. In that case, would you recommend retooling this portion so that "EXPECT_TRUE()" is called instead when running as root, or should we remove the test entirely, given that it's not very relevant to the topic of interest (i.e. file with zero permissions)?


Haha I should have thought you are not a fan of Haldeverse :)

We can always to that:

```r
> iconv(c("québec", "montréal"), to = "ASCII//TRANSLIT")
[1] "quebec"   "montreal"
```


When using *enum-key* `enum class`, the enumerators are not visible in the enclosing scope, so there is no need to decorate their name (in this case, the `TACK_` prefix).  It is harmless, and there is no need to change it now that it is in.


Pls fix for update today, Dream!

thank for working!

Sorry for bad english.


I understand that this was added to prevent a `-Wunused-parameter` warning in the `#undef DXX_HAVE_GETADDRINFO` case.  However, ignoring this flag means that users without a working `getaddrinfo` can be made to do a blocking name resolution, while users with a working `getaddrinfo` would perform local-only parsing and reject non-numeric inputs.


Under what circumstances would `dj->gameid` be zero?  If that occurs often, it would produce more efficient code to test that before testing the timer.


This test looks bogus.  The test for `p1-p0 > sizeof(sIP)` would be useful, except that by placing it after the `memcpy` call, the buffer overrun will occur before the code checks whether the size is in range.  Additionally, if `p1-p0 == sizeof(sIP)`, the `memcpy` would overwrite all bytes in `sIP`, leaving it without a null terminator.


Suggestion: `nodes` could be a good name for this instead of `mappedValue`. The objects in this 2D array would be the node objects if this was formed as a graph datastructure.


Is this expected to be the same `'/'` that was used to terminate the IP address?  If so, why recompute its location?


Is the change from `instance_definitions` to `instance_definition` mention in docs?


`p3` is initialized to point to `c=`, but there seems to be no guarantee that `c=` was not the last two bytes of the buffer.  If it were, then `p3 + 2` would read beyond the end of the buffer.


I think Duncan was wrong (or I am missing something. This advice is only valid if you use non-ascii in DESCRIPTION.

http://www.hep.by/gnu/r-patched/r-exts/R-exts_4.html

> If the `DESCRIPTION' file is not entirely in ASCII it should contain an `Encoding' field specifying an encoding. This is used as the encoding of the `DESCRIPTION' file itself and of the `R' and `NAMESPACE' files, and as the default encoding of `.Rd' files. The examples are assumed to be in this encoding when running R CMD check, and it is used for the encoding of the CITATION file. Only encoding names latin1, latin2 and UTF-8 are known to be portable. (Do not specify an encoding unless one is actually needed: doing so makes the package less portable.)


[INTEGRATION REQUIREMENTS.docx](https://github.com/Valley-View-University/Course-Management-System/files/568087/INTEGRATION.REQUIREMENTS.docx)


03:57:38 pool : submitted and accepted
03:57:39 main : zec-sa#0: 24.3S/s       total: 24.3S/s
03:57:41 gpu#0: submitting solution
03:57:41 pool : submitted and accepted
03:57:43 gpu#0: submitting solution
03:57:44 pool : submitted and accepted
03:57:44 main : zec-sa#0: 29.4S/s       total: 29.4S/s
03:57:45 gpu#0: submitting solution
03:57:45 pool : submitted and accepted
03:57:46 pool : received new target: 0x0134fecd986511...
03:57:46 gpu#0: submitting solution
03:57:46 pool : received new job #b19
03:57:46 pool : not accepted: job not found (21)
03:57:46 pool : Retrying in 5 seconds...
03:57:46 gpu#0: submitting solution
zec-sa#0write: ╧ЁхфюёЄртыхээ√щ фхёъЁшяЄюЁ Їрщыр эхтхЁхэ
03:57:46 gpu#0: Mining thread quit
03:57:49 main : zec-sa#0: 13.0S/s       total: 13.0S/s
03:57:51 pool : Connecting to zec.coinmine.pl:7007
03:57:51 pool : Connected!
03:57:52 pool : subscribed
03:57:52 pool : received new target: 0x01ffffffffffff...
03:57:52 pool : authorized worker creativenew.home
03:57:52 pool : subscribed
03:57:52 pool : already authorized
03:57:52 pool : received new job #fa
03:57:54 main : 0.0S/s detected! Attempting to restart gpu#0
03:57:54 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:57:59 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:04 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:09 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:14 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:19 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:24 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:29 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:34 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:39 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:44 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:49 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:54 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:58:59 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:59:04 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:59:09 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:59:14 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:59:19 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:59:24 main : zec-sa#0: 0.0S/s        total: 0.0S/s
03:59:29 main : zec-sa#0: 0.0S/s        total: 0.0S/s
...................................................................
10:48:01 main : zec-sa#0: 0.0S/s        total: 0.0S/s


Ok vai.

On 11/3/16, ririyad <notifications@github.com> wrote:
> Good work! It's now live! I'll try to improve the UI and add some
> functionality using javascript in my weekend. :)
>
> --
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly or view it on GitHub:
> https://github.com/emasad/BitBook/commit/83d5e9aea2ebb568bb3522441a47452d19a9adbf#commitcomment-19672687


I have GCC 5 installed and have same exact issues shown in comment #2 =(


一实训的变革开始了


assumo que não lembro o "trecho zoado" que eu comentei
por isso, caso dê merda em layout pós esse comentário, peço que me avisem


This procedure should be interrupted after the start of the digital tube stopped, the results of the digital control is not interrupted, but at a slower pace in the continued program


Oops, I wonder how that happened...


gib ownership pls


lol


If you transpose the 2D array in `state.mappedValues`, you will be able to reference elements using the `x` coordinate first which is more natural.

```
state.mappedValues[x+1][y]
```

Here is a StackOverflow for how to transpose a 2D array in Javascript but as a brainteaser see if you can construct `state.mappedValues` already transposed when you make it in `mapValuesToObjects`.

http://stackoverflow.com/questions/4492678/swap-rows-with-columns-transposition-of-a-matrix-in-javascript


Wow, Fisher Yu is so productive! Awesome.


Yeah, just nix it :)


hello @aureliojargas thanks not to make decision like that alone.
ASCII Art target is a good autopromotion, that Markdown is not.


![November 3. - Csütörtök](http://ujlipot.vakvarju.com/data/napimenu/23.jpg?v=1478164424)
Magyaros zöldbableves galuskával
Rántott sertéskaraj rizi-bizivel
Sütőtök torta feketeszederrel


This line would be incorrect.


Coool! ❤


When is this interface used ?


Gute Punkte. Damit die Diskussion nicht auf zu viele stellen verteilt wird, antworte ich im issue #64


이번 커밋에는 정적인 테스트만 얘기해 봤습니다.
다음에 "jest"를 다시 다룰 때는:

* 이벤트 발생을 동반하는 동적인 테스트
* 데이터 요청 등의 비동기 실행과 관련한 테스트

등에 대해 얘기하겠습니다.


I would have preferred to do `delete[msg.sender][todoId]` here, but it was causing an `out of gas` error. I'm not really sure why.


No problem. Open Source is very much a long-game. :+1:


Unfortunately when trying to load the logo with dimensions different from 64x48 on the RX2 / 3 Editor automatically resize to the specified size !!!


Hi @BebZ
For question "when I encode a sale, when will I see this difference in PMPs ?"
Never, this is the definition of a PMP (AWP in english). A AWP change only when a product come from outside into one of your warehouse. Never, when stock decrease.

For example when I bought product A with price X for qty of 1000 my PMP is 1X
then i I buy 4000 product A for 0,5X my PMP is
1000 X + 4000 * 0.5 X / 5000 so  0.6X and not 0.5X


onSeeCar es un método *sólo para ver el carrito*, no mandar a llamar las funciones _agregar_, _eliminar_ y _modificar_


Good catch Walid


@fabianp are you updating this directly into master? It should be a PR.

BTW the feedstock boilerplate stuff should be fixed using `conda-smithy` so the feedstocks are consistent with conda-forge.

```shell
conda install conda-smithy  # in your root env
conda smithy rerender  # from the root dir of the feedstock
```

then commit the changes.


Hello @marianosimone!

In the extract_cover() function covers cannot be opened by BytesIO in some cases instead just use Image.open().

However it's a really good stuff, so thank you!


Could you store the int value in order to Lookup for variable each time the projection change ? (Or this variable could change during playback ?)


TeamCity Xbim :: Xbim Windows UI :: Xbim Windows UI [Build 172](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1351&buildTypeId=Xbim_XbimWindowsUi_XbimWindowsUi) is now running


`$@` should be quoted.


Download speed  is limited to 200KB/s using MiniDownloader, is there any solution?


TeamCity Xbim :: Xbim Windows UI :: Xbim Windows UI [Build 172](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1351&buildTypeId=Xbim_XbimWindowsUi_XbimWindowsUi) outcome was **SUCCESS**
Summary: Running Build time: 00:00:44


Build is done


OK thanks I'll do it like this, sorry for the noise


[SANNI DAMILOLA ELECT ELECT 13CK015424 EIE 411 ASSIGNMENT.txt](https://github.com/RuyiOne/EIE411-8086-Assembler/files/568627/SANNI.DAMILOLA.ELECT.ELECT.13CK015424.EIE.411.ASSIGNMENT.txt)
[DAMILOLA SANNI ELECT ELECT 13CK015424.txt](https://github.com/RuyiOne/EIE411-8086-Assembler/files/568629/DAMILOLA.SANNI.ELECT.ELECT.13CK015424.txt)


A Joke right???


vgl->gl grand parent is a vout_display_t.
Maybe you could factorize and get the projection-slices here with var_InheritInteger(vgl->gl "gl-projection-slices")


The noise is not a problem :smile:

But commit to master may lead to broken packages as they are build and uploaded with a review.


j;lsdfkf


For now I force it by default https://github.com/robUx4/vlc/commit/4356607f6f1990d7f5216ee21656357640e9801a


I cherry-picked this commit onto the "upstream" branch, because the "master" branch is just for Debian packaging scripts living in the debian/ subdirectory.


goed gedaan man


[DAMILOLA SANNI ELECT ELECT 13CK015424.txt](https://github.com/RuyiOne/EIE411-8086-Assembler/files/568643/DAMILOLA.SANNI.ELECT.ELECT.13CK015424.txt)

[SANNI DAMILOLA ELECT ELECT 13CK015424 EIE 411 ASSIGNMENT.txt](https://github.com/RuyiOne/EIE411-8086-Assembler/files/568646/SANNI.DAMILOLA.ELECT.ELECT.13CK015424.EIE.411.ASSIGNMENT.txt)


Thanks for mentioning! 😄


10年提过类似需求，而今终于实现了，泪流满面……


Yes


delete commented part


while (p->dicPos < limit && p->buf


Hey @mathiasverraes! As you know this library itself is just for fun, I was mainly looking for something like `final` properties. I wanted the solution to be something that didn't require any more code, it should just work (in particular with Symfony forms). This is not what you would get by using a builder pattern, which would require more code.


I'd like to help you by reproducing this problem. Could you give me detailed instructions for Linux? E.g., something that works on your fresh virtual machine or a boot from live Ubuntu DVD.


remove `tabs` from the code


@facchinm any background on why this was changed I'm curious to understand what's wrong with using a vanilla dfu-utils 0.9


'rxjs/add/observable/throw'


Rename to VOUT_PROJECTION_* to avoid confuction with the vlc_es projection mode ?


很棒！我之前搜的时候发现没有骨女，因为之前在论坛上看到github上有，就一直想搜搜看来着不过没搜到。。今天上来看发现已经有了，作者辛苦了


You can add .externalNativeBuild to .gitignore


Is maybe some of that code online so that I can dig through why it was needed?


uint8_t for offset? needs to be uint16_t I think


+This will be resurrect us!


Hi there,

Please fill first an issue about it https://github.com/GuGuss/ARTE-7-Playground/issues
with details so we pinpoint the issue.

I will look into it tonight.


SIR PLS HOW DO WE UPLOAD FINALLY I CAN SEE TWO PEOPLES OWN I COMPUTER ENGINEERING ALREADY


Please check the deprecation of `topBoundingPlaneForNormal:` and `bottomBoundingPlaneForNormal:`: it seems to me, something is wrong with the deprecation comments and it's unclear how to switch to non-deprecated code. By the comments, I'd try to obtain both by calling `boundingPlaneForNormal:NIVectorInvert(normal)`, while I guess the invert is only necessary with one of these two...


tabs


Checkmarx scan results 03 Nov 2016 12:20 UTC +02:00

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Medium
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Commit ID	Owner

72a6863c143b9c3024a48a054e9fa68cb5d89f54	@web-flow


@jlopezcur you were able to reproduce the problem in the end?


This epoch index is index of epoch for which leaders are calculated.


![](https://github.trello.services/images/mini-trello-icon.png) [Create Code - Scene 2 - EVA](https://trello.com/c/uElPGwuA/82-create-code-scene-2-eva)


bro unnecessarily you were using jquery here so it got goofed up, i corrected it now


Like in EV3RT, I cannot find English version description for HRP2 kernel as well :(
Therefore, look forward to your contributions.


<img width="1280" alt="2016-11-03 19 31 03" src="https://cloud.githubusercontent.com/assets/20424289/19962683/2c07efce-a1fc-11e6-92ba-a95eab04530a.png">


この処理をすることによりストーリーボード上タッチをすることでさっき書いたNSLogが表示される


:-) saw it


Hi @arfoll ,
the main "issue" was https://github.com/arduino/dfu-utils-cross/commit/ef28bebc001c5bed0f3aa7a1961231f0dc28e996 , because OSX resets the board but nevertheless reports an error. The 1 seconds timeout is also necessary because the Curie bootloader listens on dfu for 5 seconds but the OS could take longer to initialize the usb driver, so failing early lets us retry the upload in the acceptable timeslot


no need to validate for js on, just move out `driver = new ChromeDriver();` from non-js


这是我的第一次提交


consulta tabela


I love seeing your tests! :)


This was the key.


新增用户表


What's the point?


remove space between lines


okay


There has been no change to the grammar. The PROCESSING_* defines are optional in Processing 3 since the betas. They were never an elegant/satisfactory way to specify the shader type, and type autodetection in 3 makes them redundant. But, they are still supported and can be used to override the autodetection if needed.

With regards to the vertex/position attribute, they can be used interchangeably, also since the betas. However, I would strongly advice in favor of using position instead of vertex for the following reasons:

* It is the largely accepted term in shader programming when referring to the vertex's xyzw coordinates. So, when moving back and forth between shader code written inside and outside Processing, the different naming convention eventually becomes a nuisance. As an example, [p5.js also uses position](https://github.com/processing/p5.js/blob/master/src/webgl/shaders/vertexColor.vert) to name the vertex's position attribute.

* When teaching shader programming from Processing, becomes confusing to students that vertex has attributes that are vertex, color, etc. More correctly, the vertex's attributes are position, color, normal, and what have you. In this sense, the use of "vertex" for the vertex position is an "abuse of notation", which maybe be convenient sometimes.

* Looking forward to the newer versions of GLSL, which are possible to use in Processing, the input attributes can be organized in a structure like:

```
VertexData {
  vec4 position;
  vec4 color;
  ...
} inVert;

Again, the convention here is to denote the entire struct as the "vertex" containing position, color, and other attributes.

All this being said, "vertex" for the vertex's position can be used without any problem. If you think it is better to keep using vertex instead of position in the tutorial, it is fine with me, but my opinion is that position is a better choice moving forward. What could also be good to have is an additional paragraph in the tutorial explaining this in more detail. Adding @REAS and @shiffman in case they want to chime in.


It was done in a separate commit


:) Okay


※豆知識※
main()
objective-cでは、アプリを起動するとmain()が一番最初に実行されるという決まりあり。


TeamCity libpalaso :: palaso-trusty64-lfmerge Continuous [Build 2.6.106.24245b56eb601bd781ed93a46d324a72936c09df](http://build.palaso.org/viewLog.html?buildId=79327&buildTypeId=PalasoPrecise64lfmergeContinuous) outcome was **SUCCESS**
Summary: Tests passed: 3470, ignored: 108 Build time: 00:04:57


test


@matze I am trying to reinstall the filters to check this commit out, but the error occurs:

-- The C compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Looking for CL_VERSION_2_0
-- Looking for CL_VERSION_2_0 - not found.
-- Looking for CL_VERSION_1_2
-- Looking for CL_VERSION_1_2 - not found.
-- Looking for CL_VERSION_1_1
-- Looking for CL_VERSION_1_1 - found
CMake Error at common/cmake/FindOpenCL.cmake:127 (find_package_handle_standard_args):
  Unknown CMake command "find_package_handle_standard_args".
Call Stack (most recent call first):
  CMakeLists.txt:44 (find_package)

-- Configuring incomplete, errors occurred!


might be easier if `IndexDefinition = ::ActiveRecord::ConnectionAdapters::IndexDefinition` ... recall I have been doing so in other adapters -> it minimizes the changed bits and it's usually future copy-pasta proof.


TeamCity libpalaso :: palaso-win32-master Continuous [Build 3.1.49.24245b56eb601bd781ed93a46d324a72936c09df](http://build.palaso.org/viewLog.html?buildId=79331&buildTypeId=bt223) outcome was **SUCCESS**
Summary: Tests passed: 3505, ignored: 128 Build time: 00:05:38


TeamCity libpalaso :: palaso-precise64-libpalaso-2.6 Continuous [Build 2.6.1137.24245b56eb601bd781ed93a46d324a72936c09df](http://build.palaso.org/viewLog.html?buildId=79326&buildTypeId=PalasoPrecise64v26Cont) outcome was **SUCCESS**
Summary: Tests passed: 3483, ignored: 108 Build time: 00:06:25


I recommend zogminer team to add a 1% fee to miner. You can do this by mining to a pool/wallet of your choice for a random 36 seconds every hour. If you do that, we will not remove that mining fee when adding your miner to ethOS. You have my word, you can quote me on that, etc etc).


Нужно передать его в функцию `getPictureElement`


`this.element` здесь совершенно ни к чему, можно просто использовать `fotoBlock` вместо `this.element`


pypi 更新了，修复了readme，以后有空可以继续改进～


Это вообще не нужно


SkunkHeads


SH CREW


but  this is a semi-manufactures


TeamCity libpalaso :: palaso-precise64-master Continuous [Build 3.1.41.24245b56eb601bd781ed93a46d324a72936c09df](http://build.palaso.org/viewLog.html?buildId=79329&buildTypeId=bt322) outcome was **SUCCESS**
Summary: Tests passed: 3493, ignored: 108 Build time: 00:05:20


Makes sense


but this is a semi-manufactures


I know that does not compile why not use if the printer IS_KINEMATIC, it would not be better to put control ??
#elif ENABLED (AUTO_BED_LEVELING_BILINEAR) &&! IS_KINEMATIC


@jochenkressin where could I find more information about the situations in which discovery breaks?


The apks belong in their own folder, and on PixelCalendar you forgot the `.apk` extension


Looks good


You can call `ccmake .` in the build directory and set the missing library to `OpenCL`. I don't know why the official CMake module is so stupid but ... it is.


<img width="1280" alt="2016-11-03 19 55 43" src="https://cloud.githubusercontent.com/assets/20424289/19963427/b14dabe4-a1ff-11e6-80f6-84e254bd3764.png">


アプリ起動時に右下NSLog出力されていることがわかる


@petemounce It might be worthwhile to handle drive letters other than C: here, now that we finally support that in Bazel


зря я про наследование написала :) там инкапсуляция должна быть (т.е. стек содержит список как приватное поле).


Everything should be good then. Static libcurl builds is only what is required for PHP by default.

Thanks.


another patch, but I though fireEvent was gone now?


Thanks alot for your quick response! That makes alot of sense, shame it's not a configurable timeout with a flag, I may have to try submit that as a patch to mainline dfu.


We seem to use the same issue number in our branch name, I am on 17931_ConvertSpectrumAxis


add again hello.txt


A very good change


Yay, been waiting for this day :wink:


possibly revert


I think one line between functions and two-three between classes (like in gdscript.cpp) should be good.


How do we handle vertical space between if-else clauses?


What about having a small Go file that does this and run it here with go run? Basically a wrapper for bindata. So it works on Windows out od the box. Ideally we should extend gobindata or find a tool that does this + gofmt.


You are exposing a token!!!


my version is 3.5, admittedly not the most recent. Which constructor is meant to be used? Thanks.


Inline parameters内联参数
#value#
需要改成:

#{value}
ps：与这次的提交无关，自己想知道理由，ibatis2的参数和mybtis的参数写法为什么不一样，升级mybatis3后需这样写。


How do we sort those?
Also, I see two groups here: real initialization (first line) and default values (all other lines).
And also, how do we enforce that all values have a default?


@reimundILL Sorry about that. My issue number is actually `17913`. I've managed to transpose the order of the last 2 digits. I'll correct my branch name and issue references.

They will unfortunately still be attached to your issue as the references can't be removed but they shouldn't overlap in any other way.

Sorry for the confusion.


out >> outputStream


This is not a final draft, any suggestions on how to tweak/change the whole thing are welcome
Still need to comment appropriately
Still to make it so that the function can access json array values


m


Nice!


В таком случае мне мне и Model_Portfolio не нужно))


сделано через переменную subject


sdg


クロムからなら文字化けしていない。
きつねだと、診断結果が文字化けする。
調べるの面倒だから、放置しておくかもしれない。


![](https://github.trello.services/images/mini-trello-icon.png) [Add Keyboard navigation to UI](https://trello.com/c/g7OQZkuf/1-add-keyboard-navigation-to-ui)


Thanks! :)


The system gives lecturers the chance to generate reports on students depending on time and quality of work submitted. Lecturers could monitor attendance with number of students logged on to system during a class session


That was audioPlayer that did not have the fireEvent method. audioRecorder does have one and that was changed in https://github.com/itslanguage/itslanguage-js/pull/74/


I thought that you don't need this explicit setting of the section id. But I see it is used also in the other parts of the document, so let's keep it then.


Sorry if this was already raised, but why documenting the plugins here instead of pointing to some documentation in the weaveworks-plugins repository? Every time a new plugin is added you'll need to remember to update this readme too.


The formatting of this paragraph does not look consistent with the rest of the document.


Collaborator:
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Delete workspace on the next commit.


Best would be to remove those lines, they serve no purpose but ego.


哈哈


Actually this _could_ be not correct for some cases, we use `if (!is_string($value))` in the content element wrapping service to be on the safe side.


It is really required? I wasn't aware of that when I wrote it. Has something changed here?


That should be `#controller-interface`, right?


loadingScreen causes the client to crash on server transfer. @boybook


`weaveworks-plugins` is not a repository but an organization. AFAIK there is no documentation/readme for organizations. I do not think that is critical to have this and the weaveworks-plugins in sync all the time, but with only the more stable plugins.


哈


Good catch!


Collaborator:
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I think is used in the site building


komentarz


I usually use UTF8 ellipsis (… instead of ...). Maybe reachable under alt+k.


This is a non-functional change.
This just removes the else statement and reduces lines of code.
I guess you can raise a pull request and ask maintainers if any additional speed tests are required.


@Sachin-A think this might have been the issue


Collaborator:
Corresponding review in collaborator has been completed. [Link to review](http://10.0.81.45:8080/ui#review:id=2)
Author: test2 test2
Reviewer: test1 test1


I never understood the point of empty newlines after opening brackets. Is it for readability? If so, why not just open the bracket in a new line? (Allman style)


bi


I piggyback from this `The Plugins section includes exactly one plugin description.` I did not check it.


Adding materials to Lesson3


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Reviewer: test1 test1


Isn't this a breaking change after v1.0.0-alpha ?

Doesn't alpha tag mean no more breaking changes in public API?


### nice change


Comentário Teste.


Again, thanks for spotting this. This is what happens when you focus on testing CTRL-C exits :)


Collaborator:
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It should be a semicolon (`;`) instead of a colon (`:`) between `example.com` and `<host>`, right?


Conditions is misspelled. It's correctly called later with this name so it shouldn't cause any errors.


`s/are//`


chyba do usunięcia


Congrats, nice catch!


In theory, it's one less check.


Typo in the commit message - exmaples vs examples


`s/GO/Go`


chyba wystarczy @user.tasks.to_do i .in_process i .done


@Dhoymmionnik du hast unsere Überarbeitungen einfach überschrieben, bitte achte in Zukunft darauf, dass du die neueste Version überarbeitest


redirect_to na koniec daj zeby był jeden raz tylko.


I'll put it in the list of Virtual AGC changes that haven't been implemented in NASSP. Standby Mode is also still not implemented, there was too much to do with work on the release version.


Thither? I only could find this word in "hither and thither" which is "back and forth".

I guess you wanted to write "other".


coś się zepsuło:P


Resize to 1280x720. Added flag pole. Change ground. Coins animated.


@doomspork I think `docker build` does not work after that change.
Source code is copied after mix had been invoked and `mix.exs` is missing.
```

Step 5 : RUN mix local.hex --force   && mix deps.get   && MIX_ENV=prod mix compile
 ---> Running in 43a0ac646f7c
* creating root/.mix/archives/hex-0.14.0
** (Mix) Could not find a Mix.Project, please ensure a mix.exs file is available
The command '/bin/sh -c mix local.hex --force   && mix deps.get   && MIX_ENV=prod mix compile' returned a non-zero code: 1
```


I wonder if you could add golang here - search for syntax highlighting in https://guides.github.com/features/mastering-markdown/


changed access token


No need to explain why I support Ascii art README.

But @jendrikseipp is right, a markdown generated README from txt2tags source sounds fine to me.


@rtlanceroad - What does this line do? 4.0.4 seems to build fine for me without this.


收到收到


`s/terminates, for/terminates because of/`


Add golang.


No vgl->gl is not always a real VLC object. I tried to fix that but it was too messy.


YAY


It's not supposed to change during playback


Besides method name is kinda wierd as well


Just discovered that the LIKE query is insensitive in sqlite (development environment) but not in pg (production). Would have it fixed shortly, thanks.


I wanted to keep var_2


You could omit host-related part here.


Audio is working on latest build of my AOSP 6.0 ROM


You could skip those members here too. Just have an empty struct for now.


we can use Ascii art in the README found in the txt2tags archive, and
markdown on github for having bigger headings and such (and it's a pity
github doesn't support txt2tags natively)

2016-11-03 12:38 GMT+01:00 Florent Gallaire <notifications@github.com>:

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>
> But @jendrikseipp <https://github.com/jendrikseipp> is right, a markdown
> generated README from txt2tags source sounds fine to me.
>
> —
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Err, actually - just keep the lock member only.


But unlike the viewpoint, the projection change during playback will almost never happen.


do we need three differect selectors for one button? //input[@value='347'] wont be enough?


Is this file really needed in Git?


Modules used to be able to use addJSDef in any hook but now they can only add variables in the header hook, Is there a possibility to retain the old behavior?


That's Reduz style :)


Ok. Video?


It's still there in several more test files


Wonder if a sentence like "You may want multiple webhooks to …" would be good. It can be confusing when learning things to have implicit things you don't understand.


@Maxr1998 You have another dollar then. It still doesn't work, presumably because you never changed the version number in the config file.


You probably meant 31.1.2017


修改防止log时内存泄漏


@mention doesn't work in this case


`[ci skip]`?


I did not know that but sounds good.


what are you planning on storing here?


The order should be the same as in the header IMO. So the question is, how do we order member vars in the class definition :P


Most of the time it should not be needed. If it really is, I would proposed:
```
if (cond) {
    // tons of statements over 50 lines
}

else {
    // tons of other statements
}
```


PHP 5.3 testing is broken on Travis CI's Ubuntu 14.04, and is not supported. This update is a no-go, as we have users on PHP 5.3.


TeamCity OTA+ :: rvi_sota_server :: migrations container [Build 92](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=17599&buildTypeId=ota_plus_RviSotaServer_MigrationsContainer) is now running


TeamCity Xbim :: Xbim Exchange :: XbimExchange [Build 194](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1352&buildTypeId=Xbim_XbimExchange_XbimExchange) is now running


TeamCity Xbim :: Xbim Exchange :: XbimExchange [Build 194](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1352&buildTypeId=Xbim_XbimExchange_XbimExchange) outcome was **FAILURE**
Summary: Exit code 1 (new) Build time: 00:00:39


TeamCity OTA+ :: rvi_sota_server :: migrations container [Build 92](http://teamcity.prod01.internal.advancedtelematic.com:8111/viewLog.html?buildId=17599&buildTypeId=ota_plus_RviSotaServer_MigrationsContainer) outcome was **SUCCESS**
Summary: Running Build time: 00:01:16


@rmull That line is suggested from gcc warning when I update to 4.0.4. To be honest, I have very basic knowledge about c++.


As @neikeq mentioned on IRC, we would also enforce using `if (cond)` over `if(cond)`. Same for other control flow statements.


space


I'm struggeling with this change too.
[This german (sry) wiki ](https://de.wikipedia.org/wiki/Schreibweise_von_Zahlen) describes that both ways are valid.
@adamwdraper is there a way to provide multiple delimiters?


fixed


for reference this commit has fixed issue #592


What do you mean by "fired"? Please clarify the actual purpose of this page!


I think we need to explain this process more fully!


1200x700 is pretty big. Some of the thumbnails on the homepage are > 2MB in size. Could we reduce this?


TeamCity Xbim :: XbimMvdXML :: XbimMvdXML [Build 15](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1353&buildTypeId=Xbim_XbimMvdXML_XbimMvdXML) is now running


adsasd


TeamCity Xbim :: XbimMvdXML :: XbimMvdXML [Build 15](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1353&buildTypeId=Xbim_XbimMvdXML_XbimMvdXML) outcome was **SUCCESS**
Summary: Running Build time: 00:00:37


Thanks, it should be removed now from all files.


it is in master now.


esto esta mal


Why aren't you using global `callback` blaze helper instead?


This text is internal I guess, but the document is public-facing, so we need to remove this and revise the text.
Also, what is the purpose of disabling widevine, and in what context are we talking about widevine versus core?


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