@Grz3s Well, we actually require the SD2 script.

This npc only does the epilogue part of the event. The ```npc_acherus_deathcharger``` handles everything else.
From changing the faction on killing the rider, to summoning the Salanar at the end of the quest.

Also, I think the Acid script just commited by @Phatcat might not be 100% correct.
I think there should be some delay between the spawn moment and the point when Salanar actually casts the  spell.

PS.
Also, now that I look closer, I see that this is handled in SD2 already. So I guess probably the script got broken due to latest core changes. The idea is that Salanar is summoned by spell: ```52363 Call Salanar``` and it handles the movement, spell and texts.
You can see that the same logic is here:  https://github.com/cmangos/mangos-wotlk/blob/master/src/scriptdev2/scripts/eastern_kingdoms/scarlet_enclave/ebon_hold.cpp#L2848
The SD2 script is written following the sniff, so SD2 should be the correct version.


The following doc(s) have been deployed to the [sociallogi](https://sociallogi-static-docs.pantheonsite.io/docs) Multidev environment:
- [docs/sftp](https://sociallogi-static-docs.pantheonsite.io/docs/sftp)


I didn't really leave my line comment? Added it as a commit comment. But, only so much padding we can add to things. Looks good.


That's reasonable. I didn't realize that was crates.io convention. The semver spec just says anything goes before 1.0.0.


i approve of dis


Update examples.html


HybridVentilationEnhancement (lgu1234) - Win64-Windows-7-VisualStudio-12: OK (2345 of 2345 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg)


Shouldn't it be !fireproof?


Why did you add this line 2 times?


О, так уже лучше, но остается несколько замечаний.
1) Нет, модуль было делать необязательно, достаточно просто все вынести в функции.
2) std::ios_base::sync_with_stdio(false) как раз можно было оставить в main - это как бы настройки, и они наряду с объявлениями переменных.
3) Я все-таки предполагал, что для считывания ВСЕГО инпута будет ОДНА функция, в которую по ссылке передаются переменные bus_count, people_count, bus_capacity и people_weights. Ну и названия функций ввода/вывода должны быть типа read_input и write_output.
4) Все сложные типы, включая вектора, передаются по ссылке, а если внутри не изменяется их размер, то по константной ссылке.
P.S. Да, не забывай, что код должен все время оставаться рабочим, т.е. давать OK  в системе. Для проверки этого есть дорешивание домашки (contestId=3157).


This breaks the `gulp` command after running `npm install`


And with that I am working in both directions. Cool!


Wow great changes!


great changes!


Clever :) It could even have been `min(3 , ceil(max( exponent/1023 , exponent/-1074)))`

Or super heavy `max( min(3,ceil(exponent/1023) , min(2,ceil(exponent/-1074)) )`


Yeah I know it says that, but it's not the crates.io reality (= due to how cargo decides if versions are compatible or not). It's good that you know now, to avoid annoying people (I'm not annoyed at all, just want to help).


Ок, теорию засчитываю.


Note that I had to go back to the Mock XHR as we hit the rate limit for the day.


Great choice of colors.


Hm... I would've thought that alpha tag meant fixing bugs from now on, until stable release, not potentially introducing new ones :) Otherwise, 1.0.0 alpha could've been just 0.20 :)


AddEio2Table (JasonGlazer) - x86_64-MacOS-10.9-clang: OK (2338 of 2339 tests passed, 418 test warnings)

 * 418 tests had: AUD diffs.
 * 1 test had: ERR diffs.

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.svg)


@bigmanmo this is actually required in a lot of cases, for some reason, this function would run before the `get device provider` call in the ready function would complete...
Does this solution work regularly?


Avoid exposing globals


HybridVentilationEnhancement (lgu1234) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-UnitTestsCoverage-Debug: OK (1197 of 1197 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-36.14%25-green.svg)


ups


Please keep new dependencies local when possible, especially something with as generic a name as `merge`

At the top of the file

```js
import deepmerge from 'deepmerge';
```


What is that array?


I was just thinking something like making the __repr__() function return the dataframe. I think that would allow the user to access both the hydro functions and the Pandas functions. Although I see what you mean about losing the hydro_ functions in a long list of pandas functions.


What is the exact problem?


I felt the _why_ was missing from these instructions. You could do something like:

> Experiment with this library with a temporary postgres instance so any mistakes won't mess up your data

```
$ cd /tmp                                   # move into temporary space
$ initdb pgfiles                            # create new db workdir
$ postgres -D pgfiles -h localhost -p 5433  # start db process for that workdir
```


Crap tabs fcked up, I'll fix them.


Todays progress


too short


@dwitvliet If you compare the logic in the original ternary operator and the new code "pre" and "post" have been switched. It used to be that if relation was "presynaptic_to" then postsynaptic to neuron was the result. See the attached screenshot in which I clicked on the first row in the upstream neurons and got a result labelled **Synapses presynaptic to neuron PN glomerulus DA2 38886 BH**

![image](https://cloud.githubusercontent.com/assets/23763/19985256/ab1978c0-a209-11e6-9f3f-8653b5904c44.png)


final


Still a word I think - "without a calling serialize" : without a what?


como estamos pues


MIGUEL YOU BROKE THE BUILD!


It's a simple question and just for warm up everyday


what happened to TARGET_T_.. = 10?  :smile:


Created multidev environment for test 22: [ci-22-ci-example-d8-composer](http://ci-22-ci-example-d8-composer.pantheonsite.io/).


I get the following error when I try to install `core_kernel` (from my nixpkgs clone in the master branch):

```
$ nix-shell -I . -p ocamlPackages_4_02.core_kernel --run "echo OK"

Error: The files /nix/store/7ijf8qw7kq6hv3qshghx3fr6cmmswdmq-ocaml-sexplib-113.33.03/lib/ocaml/4.02.3/site-lib/sexplib/sexplib.cmi
       and /nix/store/yx5lwk4dflng06nwnyhzd2mscc5k7699-ocaml-ppx_assert-113.33.03/lib/ocaml/4.02.3/site-lib/ppx_assert/ppx_assert_lib.cmi
       make inconsistent assumptions over interface Sexplib
Command exited with code 2.
```

I've also just realized that for some reason when I ask for `ocaml_4_02` I don't get the right version:

```
$ nix-shell -I . -p ocaml_4_02 --run "ocamlc -version"
4.01.0
```
Is it just me?
I don't know if there is any connection to the issue I had with `core_kernel` but I figured I'd better mention it.

Note: I'm going offline so won't be able to discuss the issue any further until tomorrow morning.


Actually Search is doing the same thing as Add, the only difference is that the modal doesn't reopen to show the field errors, but they are there after reloading. I'll probably just reload the page if the submitted input is invalid so that "This field is required" does not appear on top of the search bar or I'll disable the search button until there are valid chars.


@flarnie it is my understanding that this breaks as of 0.9.1

I don't believe contentState gets passed via the blockRendererFn, and according to your docs and my testing, ContentState.mergeEntityData is not a thing anymore.

Am I just confused?


Cool. Tanultam valamit. :)


зачем final поля убрал?


@sdumitriu, I think this raises a check-style error:
`[ERROR] /home/asm/uft/branch-famstudies/phenotips/components/widgets/api/src/main/resources/ApplicationResources.properties:43: Line matches the illegal pattern '\s+$'. [RegexpSingleline]`


Ok se acopla tranquilamente a las tablas que ya tenemos, lo subo cuando llegue a mi casa,


Removing every non directory entry from the wrong array.... Silly me :D


Is the hadoop client version should be same as hadoop-core version?
If so 2.3.0 is bit old I think


Yes it should be !fireproof. Thanks


I think here a text result would be  a better solution, which is better understandable for the customers. Btw. sorry for the late review...


Oh man, I don't know how I read past that 'a' so many times. I think it makes a little more sense if that is removed.


These special cases are unnecessary - `float(str('inf'))` produces `inf` anyway, and likewise with `NaN`


http://www.learncpp.com/cpp-tutorial/78-function-pointers/
http://stackoverflow.com/questions/9410/how-do-you-pass-a-function-as-a-parameter-in-c


This isn't quite right - use `np.isnan` and `np.isinf` to be sure to catch all flavours of the two values (including negatives). Also, it can be streamlined a bit:
```
if np.isnan(value) or np.isinf(value):
    return str(value)
```


Oops sorry.


открытие сесии и трнзакции делать не нужно. За это отвечает аннотация @Transactional.
Тут просто надо сделать
```
    @Transactional
    public int insert(Company company){
        sessionFactory.getCurrentSession().persist(company);
        return company.getId();
    }
```


I figured it was something like that. I don't find it confusing--just redundant.


Yep, fixed it on master.


@Swilloughby-github Thanks for cleaning up the code.


Feel free to make a pull request with this minor change.

If you do need to use it, someone out there might need it as well.

Cheers


I adore your simple and neat solutions for no. 36 and 37. You really should not have any worries about the progress you have made today, very well done!


### TP: CREATION D'UNE PLATEFORME DE GESTION DE POI MASTER 2 MBDS 2016-2017
#
## PRESENTATION
L'objectif de ce TP est la prise en main du Framework Grails permettant de concevoir une application web rapidement. Permettant ainsi au développeur de se concentrer sur la logique métier
## OUTILS DE DEVELOPPEMENT

- Java 7

- Grails 2.5.4

- IntelliJ IDEA Ultimate dont la dernière version

- MySQL

- Un serveur Apache
## INSTALLATION DE L'APPLICATION
Le projet est fourni avec deux dossiers celui contenant l'application du TP et celui contenant l'application web pour la gestion des images utilisant un serveur apache. La procédure d'installation est la suivante:

- Placez le répertoire **gpoi** à la racine de votre serveur Apache (exemple: racine du répertoire www Apache). Ce répertoire gpoi contient des images de l'application

- Créez une base de donnée sur Mysql. Editez votre fichier «  DataSource.groovy  »  pour le faire pointer sur votre nouvelle base de données. Voir la section environments ->development->dataSource, de ce fichier. Renseignez le username, password, url.

- Editez le fichier **Config.groovy**, modifiez la valeur de propriété **grails.projet.gpoi.server.folder.image** avec le path du répertoire gpoi. Exemple:"C:/wamp/www/gpoi/images/". Ne pas oublier le dernier slash. Faites de même avec la propriété **grails.projet.gpoi.server.localisation.images** permettant de joindre les images de l'application par le biais de votre serveur apache. Exemple: "http://localhost/gpoi/images/". Ne pas oublier également le dernier slash.

- Note: Avant de lancer l'application, lancez, votre serveur Apache et votre serveur de base de données


I'm looking at the TeX example, and this commit everything looks good: 36b0e71


[inst/extdata/exMatrix.R:4:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
exMatrix <- matrix(rnorm(10e4), ncol = 20)
^~~~~~~~
```
[inst/extdata/exMatrix.R:5:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
rownames(exMatrix) <- paste0("GENE", seq_len(nrow(exMatrix)))
         ^~~~~~~~
```
[inst/extdata/exMatrix.R:5:51:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
rownames(exMatrix) <- paste0("GENE", seq_len(nrow(exMatrix)))
                                                  ^~~~~~~~
```
[inst/extdata/exMatrix.R:6:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
colnames(exMatrix) <- paste0("SampleID", seq_len(ncol(exMatrix)))
         ^~~~~~~~
```
[inst/extdata/exMatrix.R:6:55:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
colnames(exMatrix) <- paste0("SampleID", seq_len(ncol(exMatrix)))
                                                      ^~~~~~~~
```
[inst/extdata/exMatrix.R:8:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
format(object.size(exMatrix), unit = "Mb")
                   ^~~~~~~~
```
[inst/extdata/exMatrix.R:9:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
head(exMatrix)
     ^~~~~~~~
```
[inst/extdata/exMatrix.R:11:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L11) *style:* **Variable and function names should be all lowercase.**
```r
h5save(exMatrix,
       ^~~~~~~~
```
[inst/extdata/exMatrix.R:17:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L17) *style:* **Variable and function names should be all lowercase.**
```r
DelayedArray(HDF5Dataset(file = file.path(fpath, "exMatrix.h5"),
^~~~~~~~~~~~
```
[inst/extdata/exMatrix.R:20:3:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L20) *style:* **Commented code should be removed.**
```r
# file.remove(file.path(fpath, "exMatrix.h5"))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/exMatrix.R:21:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/extdata/exMatrix.R#L21) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/scripts/ExperimentList-Ex.R:5:39:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L5) *style:* **Put spaces around all infix operators.**
```r
arraydat <- matrix(seq(101, 108), ncol=4,
                                     ~^~
```
[inst/scripts/ExperimentList-Ex.R:7:62:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
                     c("ENST00000294241", "ENST00000355076"),
                                                             ^
```
[inst/scripts/ExperimentList-Ex.R:11:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
  slope53 = rnorm(4),
                     ^
```
[inst/scripts/ExperimentList-Ex.R:12:58:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
  row.names = c("array1", "array2", "array3", "array4")),
                                                         ^
```
[inst/scripts/ExperimentList-Ex.R:14:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L14) *style:* **Put spaces around all infix operators.**
```r
exprdat <- Biobase::ExpressionSet(assayData=arraydat, phenoData=arraypdat)
                                          ~^~
```
[inst/scripts/ExperimentList-Ex.R:14:64:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L14) *style:* **Put spaces around all infix operators.**
```r
exprdat <- Biobase::ExpressionSet(assayData=arraydat, phenoData=arraypdat)
                                                              ~^~
```
[inst/scripts/ExperimentList-Ex.R:23:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- list(exprdat, methyldat)
^~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:24:7:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
names(ExpList) <- c("Affy", "Methyl450k")
      ^~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:25:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
myExperimentList <- ExperimentList(ExpList)
^~~~~~~~~~~~~~~~
```
[inst/scripts/ExperimentList-Ex.R:25:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/ExperimentList-Ex.R#L25) *style:* **Variable and function names should be all lowercase.**
```r
myExperimentList <- ExperimentList(ExpList)
                                   ^~~~~~~
```
[inst/scripts/getHits-Ex.R:6:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/getHits-Ex.R#L6) *style:* **Variable and function names should be all lowercase.**
```r
getHits(myMultiAssayExperiment, gr1)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[inst/scripts/listToMap-Ex.R:4:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/listToMap-Ex.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
mySampleMap <- listToMap(mylist)
^~~~~~~~~~~
```
[inst/scripts/listToMap-Ex.R:7:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/listToMap-Ex.R#L7) *style:* **Variable and function names should be all lowercase.**
```r
mylist <- mapToList(mySampleMap)
                    ^~~~~~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
             ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:8:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
ExpList <- c(ExpList, myRRA)
                      ^~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:9:7:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L9) *style:* **Variable and function names should be all lowercase.**
```r
names(ExpList)[3] <- "CNVgistic"
      ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:15:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
pDat <- data.frame(sex = c("M", "F", "M", "F"),
^~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:20:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
myMultiAssayExperiment <- MultiAssayExperiment(experiments = ExpList,
^~~~~~~~~~~~~~~~~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:20:62:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L20) *style:* **Variable and function names should be all lowercase.**
```r
myMultiAssayExperiment <- MultiAssayExperiment(experiments = ExpList,
                                                             ^~~~~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:21:56:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
                                               pData = pDat,
                                                       ^~~~
```
[inst/scripts/MultiAssayExperiment-Ex.R:22:60:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/MultiAssayExperiment-Ex.R#L22) *style:* **Variable and function names should be all lowercase.**
```r
                                               sampleMap = mySampleMap)
                                                           ^~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:2:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/RangedRaggedAssay-Ex.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
library(GenomicRanges)
        ^~~~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:8:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/RangedRaggedAssay-Ex.R#L8) *style:* **Put spaces around all infix operators.**
```r
          ranges = IRanges(c(58493000, 3), width=9000),
                                               ~^~
```
[inst/scripts/RangedRaggedAssay-Ex.R:15:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/RangedRaggedAssay-Ex.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
grl <- GRangesList("gr1" = gr1, "gr2" = gr2, "gr3" = gr3)
       ^~~~~~~~~~~
```
[inst/scripts/RangedRaggedAssay-Ex.R:19:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/RangedRaggedAssay-Ex.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
myRRA <- RangedRaggedAssay(grl)
^~~~~
```
[inst/scripts/sampleMap-Ex.R:21:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/inst/scripts/sampleMap-Ex.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
mySampleMap <- listToMap(mylist)
^~~~~~~~~~~
```
[R/API.R:1:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L1) *style:* **Variable and function names should be all lowercase.**
```r
.cleanC = function(x) gsub(".__C__", "", x)
^~~~~~~
```
[R/API.R:1:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L1) *style:* **Use <-, not =, for assignment.**
```r
.cleanC = function(x) gsub(".__C__", "", x)
        ^
```
[R/API.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.cleanT = function(x) gsub(".__T__", "", x)
^~~~~~~
```
[R/API.R:2:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L2) *style:* **Use <-, not =, for assignment.**
```r
.cleanT = function(x) gsub(".__T__", "", x)
        ^
```
[R/API.R:26:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
        .apiDash()
        ^~~~~~~~
```
[R/API.R:36:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
.packageAPI <- function(packname="MultiAssayExperiment") {
^~~~~~~~~~~
```
[R/API.R:37:8:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L37) *style:* **Use <-, not =, for assignment.**
```r
    ns = getNamespace(packname)
       ^
```
[R/API.R:38:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L38) *style:* **Variable and function names should be all lowercase.**
```r
    nsElements = ls(ns, all.names = TRUE)
    ^~~~~~~~~~
```
[R/API.R:38:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L38) *style:* **Use <-, not =, for assignment.**
```r
    nsElements = ls(ns, all.names = TRUE)
               ^
```
[R/API.R:39:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L39) *style:* **Variable and function names should be all lowercase.**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
    ^~~~
```
[R/API.R:39:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L39) *warning:* **local variable ‘nsNS’ assigned but may not be used**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
    ^~~~
```
[R/API.R:39:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L39) *style:* **Use <-, not =, for assignment.**
```r
    nsNS = get(".__NAMESPACE__.", ns) # probably volatile?
         ^
```
[R/API.R:40:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L40) *style:* **Use <-, not =, for assignment.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
            ^
```
[R/API.R:40:15:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
              ^~~~~~~
```
[R/API.R:40:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L40) *style:* **Variable and function names should be all lowercase.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
                                     ^~~~~~~~~~
```
[R/API.R:40:55:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L40) *style:* **Put spaces around all infix operators.**
```r
    classes = .cleanC(grep(".__C__", nsElements, value=TRUE))
                                                     ~^~
```
[R/API.R:41:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L41) *style:* **Use <-, not =, for assignment.**
```r
    todrop = sapply(classes, function(x)extends(x, "language"))
           ^
```
[R/API.R:42:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L42) *style:* **Use <-, not =, for assignment.**
```r
    if (any(todrop)) classes = classes[-which(todrop)]
                             ^
```
[R/API.R:43:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
    ^~~~~~~~~~~~
```
[R/API.R:43:18:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L43) *style:* **Use <-, not =, for assignment.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                 ^
```
[R/API.R:43:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                   ^~~~~~~
```
[R/API.R:43:58:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L43) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithin = .cleanT(grep(packname, grep(".__T__", nsElements,
                                                         ^~~~~~~~~~
```
[R/API.R:44:53:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L44) *style:* **Put spaces around all infix operators.**
```r
                                               value=TRUE),
                                                   ~^~
```
[R/API.R:45:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L45) *style:* **Put spaces around all infix operators.**
```r
                                value=TRUE))
                                    ~^~
```
[R/API.R:46:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
    ^~~~~~~~~~~~~
```
[R/API.R:46:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L46) *style:* **Use <-, not =, for assignment.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                  ^
```
[R/API.R:46:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                    ^~~~~~~
```
[R/API.R:46:59:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L46) *style:* **Variable and function names should be all lowercase.**
```r
    TmethsWithout = .cleanT(grep(packname, grep(".__T__", nsElements,
                                                          ^~~~~~~~~~
```
[R/API.R:47:54:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L47) *style:* **Put spaces around all infix operators.**
```r
                                                value=TRUE),
                                                    ~^~
```
[R/API.R:48:39:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L48) *style:* **Put spaces around all infix operators.**
```r
                                 value=TRUE, invert=TRUE))
                                     ~^~
```
[R/API.R:48:52:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L48) *style:* **Put spaces around all infix operators.**
```r
                                 value=TRUE, invert=TRUE))
                                                  ~^~
```
[R/API.R:49:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L49) *style:* **Use <-, not =, for assignment.**
```r
    Mcmeths = lapply(classes, function(x) utils::methods(class=x))
            ^
```
[R/API.R:49:63:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L49) *style:* **Put spaces around all infix operators.**
```r
    Mcmeths = lapply(classes, function(x) utils::methods(class=x))
                                                             ~^~
```
[R/API.R:50:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L50) *style:* **Use <-, not =, for assignment.**
```r
    names(Mcmeths) = classes
                   ^
```
[R/API.R:51:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L51) *style:* **Commented code should be removed.**
```r
    #list(nsElements = nsElements, nsNS = nsNS, classes=classes, cmeths=cmeths)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/API.R:52:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
               ~^~
```
[R/API.R:52:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                ~^~
```
[R/API.R:52:56:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L52) *style:* **Put spaces around all infix operators.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                                      ~^~
```
[R/API.R:52:57:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L52) *style:* **Variable and function names should be all lowercase.**
```r
    list(classes=classes, Mcmeths=Mcmeths, TmethsWithin=TmethsWithin,
                                                        ^~~~~~~~~~~~
```
[R/API.R:53:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L53) *style:* **Put spaces around all infix operators.**
```r
         TmethsWithout=TmethsWithout)
                     ~^~
```
[R/API.R:53:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L53) *style:* **Variable and function names should be all lowercase.**
```r
         TmethsWithout=TmethsWithout)
                       ^~~~~~~~~~~~~
```
[R/API.R:56:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L56) *style:* **Variable and function names should be all lowercase.**
```r
.apiDash <- function() {
^~~~~~~~
```
[R/API.R:69:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L69) *style:* **Commented code should be removed.**
```r
      #        sliderInput("slider", "Number of observations:", 1, 100, 50)
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/API.R:82:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L82) *style:* **Put spaces around all infix operators.**
```r
          width=9
              ~^~
```
[R/API.R:90:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L90) *style:* **Use <-, not =, for assignment.**
```r
    getconts = shiny::reactive( {
             ^
```
[R/API.R:91:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L91) *style:* **Use <-, not =, for assignment.**
```r
      papi = .packageAPI( input$packname )
           ^
```
[R/API.R:91:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
      papi = .packageAPI( input$packname )
             ^~~~~~~~~~~
```
[R/API.R:92:40:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L92) *style:* **Put spaces around all infix operators.**
```r
      list(classDF = data.frame(classes=papi$classes),
                                      ~^~
```
[R/API.R:93:42:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L93) *style:* **Put spaces around all infix operators.**
```r
           methsInDF = data.frame(methsIn=papi$TmethsWithin),
                                        ~^~
```
[R/API.R:93:48:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L93) *style:* **Variable and function names should be all lowercase.**
```r
           methsInDF = data.frame(methsIn=papi$TmethsWithin),
                                               ^~~~~~~~~~~~
```
[R/API.R:94:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L94) *style:* **Put spaces around all infix operators.**
```r
           methsOutDF = data.frame(methsOut=papi$TmethsWithout))
                                          ~^~
```
[R/API.R:94:50:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L94) *style:* **Variable and function names should be all lowercase.**
```r
           methsOutDF = data.frame(methsOut=papi$TmethsWithout))
                                                 ^~~~~~~~~~~~~
```
[R/API.R:96:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L96) *style:* **Use <-, not =, for assignment.**
```r
    output$ls1 = shiny::renderTable( getconts()$classDF )
               ^
```
[R/API.R:96:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L96) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls1 = shiny::renderTable( getconts()$classDF )
                                                ^~~~~~~
```
[R/API.R:97:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L97) *style:* **Use <-, not =, for assignment.**
```r
    output$ls2 = shiny::renderTable( getconts()$methsInDF )
               ^
```
[R/API.R:97:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L97) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls2 = shiny::renderTable( getconts()$methsInDF )
                                                ^~~~~~~~~
```
[R/API.R:98:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L98) *style:* **Use <-, not =, for assignment.**
```r
    output$ls3 = shiny::renderTable( getconts()$methsOutDF )
               ^
```
[R/API.R:98:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/API.R#L98) *style:* **Variable and function names should be all lowercase.**
```r
    output$ls3 = shiny::renderTable( getconts()$methsOutDF )
                                                ^~~~~~~~~~
```
[R/assay-methods.R:58:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L58) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- as.character(ranges)
            ^~~~~~~~
```
[R/assay-methods.R:60:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L60) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- names(ranges)
            ^~~~~~~~
```
[R/assay-methods.R:63:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L63) *style:* **Variable and function names should be all lowercase.**
```r
        rowNames <- rownames(x)
        ^~~~~~~~
```
[R/assay-methods.R:65:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L65) *style:* **Variable and function names should be all lowercase.**
```r
            rangeNames <- unique(as.character(
            ^~~~~~~~~~
```
[R/assay-methods.R:67:31:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L67) *style:* **Variable and function names should be all lowercase.**
```r
            if (length(unique(rowNames)) != length(rangeNames))
                              ^~~~~~~~
```
[R/assay-methods.R:67:52:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L67) *style:* **Variable and function names should be all lowercase.**
```r
            if (length(unique(rowNames)) != length(rangeNames))
                                                   ^~~~~~~~~~
```
[R/assay-methods.R:69:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L69) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- rangeNames
            ^~~~~~~~
```
[R/assay-methods.R:69:25:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L69) *style:* **Variable and function names should be all lowercase.**
```r
            rowNames <- rangeNames
                        ^~~~~~~~~~
```
[R/assay-methods.R:73:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L73) *style:* **Variable and function names should be all lowercase.**
```r
    newMatrix <- do.call(cbind, lapply(seq_along(x), function(j, obj) {
    ^~~~~~~~~
```
[R/assay-methods.R:80:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
    colnames(newMatrix) <- colnames(x)
             ^~~~~~~~~
```
[R/assay-methods.R:81:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L81) *style:* **Variable and function names should be all lowercase.**
```r
    rownames(newMatrix) <- rowNames
             ^~~~~~~~~
```
[R/assay-methods.R:81:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L81) *style:* **Variable and function names should be all lowercase.**
```r
    rownames(newMatrix) <- rowNames
                           ^~~~~~~~
```
[R/assay-methods.R:82:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L82) *style:* **Variable and function names should be all lowercase.**
```r
    return(newMatrix)
           ^~~~~~~~~
```
[R/assay-methods.R:95:33:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/assay-methods.R#L95) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    lapply(x, FUN = function(y) {assay(y)})
                                ^
```
[R/ExperimentList-class.R:1:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L1) *style:* **Commented code should be removed.**
```r
## Helper functions for check non-NULL rownames
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.getRowNamesErr <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:4:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L4) *warning:* **local variable ‘msg’ assigned but may not be used**
```r
        msg <- paste(" rownames in", class(object), "are NULL")
        ^~~
```
[R/ExperimentList-class.R:10:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L10) *style:* **Variable and function names should be all lowercase.**
```r
.getColNamesErr <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:12:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L12) *warning:* **local variable ‘msg’ assigned but may not be used**
```r
        msg <- paste(" colnames in", class(object), "are NULL")
        ^~~
```
[R/ExperimentList-class.R:19:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
.createRownames <- function(object) {
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:28:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
.PrepElements <- function(object) {
^~~~~~~~~~~~~
```
[R/ExperimentList-class.R:29:6:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L29) *style:* **Commented code should be removed.**
```r
    ## use is() to exclude RangedRaggedAssay
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:34:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
        object <- .createRownames(object)
                  ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:39:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L39) *style:* **Commented code should be removed.**
```r
### ==============================================
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:41:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L41) *style:* **Commented code should be removed.**
```r
### ----------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:59:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L59) *style:* **Variable and function names should be all lowercase.**
```r
.ExperimentList <- setClass("ExperimentList", contains = "SimpleList")
^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:61:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L61) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:83:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L83) *style:* **Variable and function names should be all lowercase.**
```r
    x <- lapply(x, .PrepElements)
                   ^~~~~~~~~~~~~
```
[R/ExperimentList-class.R:84:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L84) *style:* **Variable and function names should be all lowercase.**
```r
    .ExperimentList(S4Vectors::SimpleList(x))
    ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:90:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L90) *style:* **Put spaces around all infix operators.**
```r
    x <- structure(list(), .Names=character())
                                ~^~
```
[R/ExperimentList-class.R:91:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L91) *style:* **Variable and function names should be all lowercase.**
```r
    .ExperimentList(S4Vectors::SimpleList(x))
    ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:94:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L94) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:99:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L99) *style:* **Variable and function names should be all lowercase.**
```r
.getMethErr <- function(object) {
^~~~~~~~~~~
```
[R/ExperimentList-class.R:100:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L100) *style:* **Variable and function names should be all lowercase.**
```r
    supportedMethods <- c("colnames", "rownames", "[", "dim")
    ^~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:101:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    methErr <- which(!sapply(supportedMethods, function(x) {
    ^~~~~~~
```
[R/ExperimentList-class.R:101:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
    methErr <- which(!sapply(supportedMethods, function(x) {
                             ^~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:104:13:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L104) *style:* **Variable and function names should be all lowercase.**
```r
    if (any(methErr)) {
            ^~~~~~~
```
[R/ExperimentList-class.R:105:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
        unsupported <- names(methErr)
                             ^~~~~~~
```
[R/ExperimentList-class.R:114:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L114) *style:* **Commented code should be removed.**
```r
## 1.i. Check that [, colnames, rownames and dim methods are possible
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:115:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L115) *style:* **Variable and function names should be all lowercase.**
```r
.checkMethodsTable <- function(object) {
^~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:118:21:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L118) *style:* **Variable and function names should be all lowercase.**
```r
        coll_err <- .getMethErr(object[[i]])
                    ^~~~~~~~~~~
```
[R/ExperimentList-class.R:132:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L132) *style:* **Variable and function names should be all lowercase.**
```r
.checkExperimentListNames <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:135:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L135) *style:* **Variable and function names should be all lowercase.**
```r
        rowname_err <- .getRowNamesErr(object[[i]])
                       ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:136:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
        colname_err <- .getColNamesErr(object[[i]])
                       ^~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:155:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L155) *style:* **Variable and function names should be all lowercase.**
```r
.validExperimentList <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:157:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L157) *style:* **Variable and function names should be all lowercase.**
```r
        c(.checkMethodsTable(object),
          ^~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:158:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
          .checkExperimentListNames(object))
          ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:162:43:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L162) *style:* **Variable and function names should be all lowercase.**
```r
S4Vectors::setValidity2("ExperimentList", .validExperimentList)
                                          ^~~~~~~~~~~~~~~~~~~~
```
[R/ExperimentList-class.R:179:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L179) *style:* **Only use double-quotes.**
```r
    cat(sprintf('%s', o_class),
                ^~~~
```
[R/ExperimentList-class.R:181:23:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L181) *style:* **Only use double-quotes.**
```r
        paste0(o_len, ':'),
                      ^~~
```
[R/ExperimentList-class.R:182:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/ExperimentList-class.R#L182) *style:* **Only use double-quotes.**
```r
        sprintf('\n [%i] %s: %s with %s rows and %s columns',
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/hasAssay.R:19:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
        applyFun <- experiments
        ^~~~~~~~
```
[R/hasAssay.R:21:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L21) *style:* **Variable and function names should be all lowercase.**
```r
        applyFun <- ExperimentList
        ^~~~~~~~
```
[R/hasAssay.R:23:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L23) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- vapply(findMethods("assay")@signatures,
    ^~~~~~~~~~~~
```
[R/hasAssay.R:26:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- unique(validClasses)
    ^~~~~~~~~~~~
```
[R/hasAssay.R:26:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L26) *style:* **Variable and function names should be all lowercase.**
```r
    validClasses <- unique(validClasses)
                           ^~~~~~~~~~~~
```
[R/hasAssay.R:27:16:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    all(vapply(applyFun(object), FUN = function(element) {
               ^~~~~~~~
```
[R/hasAssay.R:28:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/hasAssay.R#L28) *style:* **Variable and function names should be all lowercase.**
```r
        any(vapply(validClasses, FUN = function(cl) {
                   ^~~~~~~~~~~~
```
[R/listToMap.R:34:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/listToMap.R#L34) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- do.call(S4Vectors::rbind, DFmap)
    ^~~~~~
```
[R/listToMap.R:35:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
    ^~~~~~
```
[R/listToMap.R:35:15:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
              ^~~~~~
```
[R/listToMap.R:35:29:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/listToMap.R#L35) *style:* **Variable and function names should be all lowercase.**
```r
    newMap <- newMap[!is.na(newMap[, 1]), , drop = FALSE]
                            ^~~~~~
```
[R/listToMap.R:36:12:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/listToMap.R#L36) *style:* **Variable and function names should be all lowercase.**
```r
    return(newMap)
           ^~~~~~
```
[R/mapToList.R:14:30:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L14) *style:* **Variable and function names should be all lowercase.**
```r
mapToList <- function(dfmap, assayCol = "assay") {
                             ^~~~~~~~
```
[R/mapToList.R:15:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L15) *style:* **Variable and function names should be all lowercase.**
```r
    if (!S4Vectors::isSingleString(assayCol))
                                   ^~~~~~~~
```
[R/mapToList.R:17:10:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L17) *style:* **Variable and function names should be all lowercase.**
```r
    if (!assayCol %in% colnames(dfmap))
         ^~~~~~~~
```
[R/mapToList.R:19:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
    assayColIndex <- which(names(dfmap) == assayCol)
    ^~~~~~~~~~~~~
```
[R/mapToList.R:19:44:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
    assayColIndex <- which(names(dfmap) == assayCol)
                                           ^~~~~~~~
```
[R/mapToList.R:24:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L24) *style:* **Variable and function names should be all lowercase.**
```r
    grp <- dfmap[[assayCol]]
                  ^~~~~~~~
```
[R/mapToList.R:26:34:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L26) *style:* **Put spaces around all infix operators.**
```r
        grp <- factor(grp, levels=unique(grp))
                                ~^~
```
[R/mapToList.R:27:31:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L27) *style:* **Variable and function names should be all lowercase.**
```r
    S4Vectors::split(dfmap[, -assayColIndex], grp)
                              ^~~~~~~~~~~~~
```
[R/mapToList.R:28:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/mapToList.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
}
 ^
```
[R/MultiAssayExperiment-class.R:2:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L2) *style:* **Variable and function names should be all lowercase.**
```r
.uniqueSortIdentical <- function(charvec1, charvec2) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:3:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L3) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- list(charvec1, charvec2)
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:4:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- lapply(listInput, function(x) sort(unique(x)))
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:4:25:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L4) *style:* **Variable and function names should be all lowercase.**
```r
    listInput <- lapply(listInput, function(x) sort(unique(x)))
                        ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:5:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
    return(identical(listInput[[1]], listInput[[2]]))
                     ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:5:38:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L5) *style:* **Variable and function names should be all lowercase.**
```r
    return(identical(listInput[[1]], listInput[[2]]))
                                     ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:8:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L8) *style:* **Variable and function names should be all lowercase.**
```r
.allIn <- function(charvec1, charvec2) {
^~~~~~
```
[R/MultiAssayExperiment-class.R:12:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L12) *style:* **Commented code should be removed.**
```r
### ==============================================
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:14:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L14) *style:* **Commented code should be removed.**
```r
### ----------------------------------------------
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:73:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L73) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:80:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L80) *style:* **Variable and function names should be all lowercase.**
```r
.checkExperimentList <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:101:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L101) *style:* **Variable and function names should be all lowercase.**
```r
.checkSampleNames <- function(object) {
^~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:102:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L102) *style:* **Variable and function names should be all lowercase.**
```r
    sampMap <- sampleMap(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:103:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L103) *style:* **Variable and function names should be all lowercase.**
```r
    assayCols <- mapToList(sampMap[, c("assay", "colname")])
    ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:103:28:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L103) *style:* **Variable and function names should be all lowercase.**
```r
    assayCols <- mapToList(sampMap[, c("assay", "colname")])
                           ^~~~~~~
```
[R/MultiAssayExperiment-class.R:104:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L104) *style:* **Variable and function names should be all lowercase.**
```r
    colNams <- colnames(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:105:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
    ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:105:36:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
                                   ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:105:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L105) *style:* **Variable and function names should be all lowercase.**
```r
    logicResult <- mapply(function(columnNames, assayColumns) {
                                                ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:106:24:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L106) *style:* **Variable and function names should be all lowercase.**
```r
        identical(sort(columnNames), sort(assayColumns))
                       ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:106:43:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L106) *style:* **Variable and function names should be all lowercase.**
```r
        identical(sort(columnNames), sort(assayColumns))
                                          ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:107:22:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L107) *style:* **Variable and function names should be all lowercase.**
```r
    }, columnNames = colNams,
                     ^~~~~~~
```
[R/MultiAssayExperiment-class.R:108:20:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L108) *style:* **Variable and function names should be all lowercase.**
```r
    assayColumns = assayCols)
                   ^~~~~~~~~
```
[R/MultiAssayExperiment-class.R:109:14:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L109) *style:* **Variable and function names should be all lowercase.**
```r
    if (!all(logicResult)) {
             ^~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:116:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L116) *style:* **Commented code should be removed.**
```r
## 2.i. See setClass above where pData = "DataFrame"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:121:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L121) *style:* **Variable and function names should be all lowercase.**
```r
.checkSampleMapNames <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:123:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L123) *style:* **Variable and function names should be all lowercase.**
```r
    if (!(.allIn(
          ^~~~~~
```
[R/MultiAssayExperiment-class.R:124:18:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L124) *style:* **Variable and function names should be all lowercase.**
```r
        rownames(pData(object)),
                 ^~~~~
```
[R/MultiAssayExperiment-class.R:136:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L136) *style:* **Variable and function names should be all lowercase.**
```r
.uniqueNamesInAssays <- function(object) {
^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:137:5:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L137) *style:* **Variable and function names should be all lowercase.**
```r
    SampMap <- sampleMap(object)
    ^~~~~~~
```
[R/MultiAssayExperiment-class.R:138:29:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L138) *style:* **Variable and function names should be all lowercase.**
```r
    lcheckdups <- mapToList(SampMap[, c("assay", "colname")])
                            ^~~~~~~
```
[R/MultiAssayExperiment-class.R:148:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L148) *style:* **Variable and function names should be all lowercase.**
```r
.validMultiAssayExperiment <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:150:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L150) *style:* **Variable and function names should be all lowercase.**
```r
        c(.checkExperimentList(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:151:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L151) *style:* **Variable and function names should be all lowercase.**
```r
          .checkSampleMapNames(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:152:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L152) *style:* **Variable and function names should be all lowercase.**
```r
          .uniqueNamesInAssays(object),
          ^~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:153:11:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L153) *style:* **Variable and function names should be all lowercase.**
```r
          .checkSampleNames(object)
          ^~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:158:49:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L158) *style:* **Variable and function names should be all lowercase.**
```r
S4Vectors::setValidity2("MultiAssayExperiment", .validMultiAssayExperiment)
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:160:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L160) *style:* **Variable and function names should be all lowercase.**
```r
.hasOldAPI <- function(object) {
^~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:169:9:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L169) *style:* **Variable and function names should be all lowercase.**
```r
    if (.hasOldAPI(object)) {
        ^~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:170:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L170) *style:* **Variable and function names should be all lowercase.**
```r
        object <- updateObject(object)
                  ^~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:181:19:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L181) *style:* **Variable and function names should be all lowercase.**
```r
    c_mp <- class(pData(object))
                  ^~~~~
```
[R/MultiAssayExperiment-class.R:183:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L183) *style:* **Only use double-quotes.**
```r
    cat(sprintf('A %s', o_class),
                ^~~~~~
```
[R/MultiAssayExperiment-class.R:197:17:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L197) *style:* **Only use double-quotes.**
```r
        sprintf('%s', c_elist), "instance",
                ^~~~
```
[R/MultiAssayExperiment-class.R:198:59:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L198) *style:* **Only use double-quotes.**
```r
        "\n pData() - for the primary/phenotype", sprintf('%s', c_mp),
                                                          ^~~~
```
[R/MultiAssayExperiment-class.R:199:65:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L199) *style:* **Only use double-quotes.**
```r
        "\n sampleMap() - for the sample availability", sprintf('%s', c_sm),
                                                                ^~~~
```
[R/MultiAssayExperiment-class.R:205:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L205) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:252:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L252) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:268:2:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L268) *style:* **Commented code should be removed.**
```r
### - - - - - - - - - - - - - - - - - - - - - - - -
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/MultiAssayExperiment-class.R:337:1:](https://github.com/LiNk-NY/MultiAssayExperiment/blob/7f46227f039f591a0fe1ca2b69bca700a1e7d917/R/MultiAssayExperiment-class.R#L337) *style:* **Variable and function names should be all lowercase.**
```r
.rearrangeMap <- function(sampMap) {
^~~~~~~~~~~~~
```


@fuine @ujh Thanks for fixing stainless as soon as it broke, much appreciated !


The convention is to use `$` for a shell prompt and `>` for a repl prompt. Lines that don't begin the prompt are considered output so they don't need to begin with comments. You could do something like:

```
$ cd path/to/nopegres
$ node
> pg = require('./index')
> conf = { port: 5433, user: process.env.USER, database: 'postgres', application_name: 'psql' }
> client = pg.createClient(conf)
Client {....}
> res = client.query('select x from values (1)')
QueryResult {...}
> res.on("row", (row) => console.log(row))
{ x: 1 }
> client.end()
> client.status
'disconnected'
```


Assignment via upload


Good catch! Thanks!


could you add missing entry to docs?
```
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'h2o.isax'
  ‘x’
```


The Task.Run is now redundant, just do Task.Delay directly


Cheers, knew a forgot a few


Thanks. PR #1412


You will want to check in `buildSrc`. It's versioned build logic just organized in a different location.


//Fixes nothing :(


Тема домашней работы "Функции"
Вариант "Общий"


hah, GH just emailed me about this


Try to split the code onto multiple lines if it gets too long. I can't even read the full line on github


Thanks Daniel! I don't love that sprockets-es6 isn't stable - if my app gets more JS heavy, I may consider it.


?
> On Nov 3, 2016, at 12:11 PM, Linna-Cubbage <notifications@github.com> wrote:
>
> Wow that's just...
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub <https://github.com/stmarg/alienInvasion/commit/b231509df0f02b3c7186a8e1a87d8458327f9cee#commitcomment-19685335>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AVko8a6dNVCRwKCShrbZ-ScI0TPG0suZks5q6jHmgaJpZM4KozGx>.
>


there is no documentation entry for `#' @param \dots arguments passed to \code{h2o.cor}`
```
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'h2o.cor'
  ‘...’
```


Created multidev environment for test 23: [ci-23](http://ci-23-ci-example-d8-composer.pantheonsite.io/) in site [ci-example-d8-composer](https://dashboard.pantheon.io/sites/c401fd14-f745-4e51-9af2-f30b45146a0c#ci-23).


Absolutely! Was planning on introducing FG, but for now I wanted to get this up and running. With only two models to create, I felt it wasn't the best investment of time. Shouldn't be too much now, though.


Coding style.


¿Qué sentido tiene renombrar a _idvalor**2**_ el parámetro? [ rompe con el resto de funciones de nuestra librería y estoy "pagando" para que sea homogénea ;) ]


@andrewpbray do you have suggestions for a different error function?


Try using the built-in VI measure, which uses the total reduction in RSS due to splits on that particular variable.


Minor wording changes


No era necesario quitar el atributo ID (de hecho es aconsejable que tenga alguno)
De momento déjalo así... ya determinaré la codificación más oportuna en su momento.


@brandyscarney is there any particular reason to not use angular 2.1.2 instead of 2.1.1 ? Thank you :)


Seeing Zsofi's comment, just another (similar) version from me to Ws 21:
System.out.println(proverb.substring(proverb.indexOf(",") + 2));
Cheers :)
Bea


I'm afraid I cannot really help you with ws37 because I was also struggling with that task. So as far as I could place here any observations about your work today, it's well done and reflects the real struggle 🎱 Ehm, the solution of ws34 was a bit unclear to me, I just ordered the thing to print "Fizzbuzz" in the end, have you ultimately concatenated the two previous print out commands into one...?


I don't really mind either way, but the lua binding is more flexible. I haven't evaluated every future mission, but its possible there may be times in multi-stage fights down the road where its needed between stages of the fight, at which point, I don't know if a state in instance would cover it unless you could unset that state as well. With the binding, you have control of it as part of the script, and would be covered. Not all instances need this either, so its not necessarily extra work on the person scripting the instance.


"same DirectNDArray" -> original DirectNDArray reference


`logicManager.reverse` is a private-ish implementation detail of the logic manager. What do you think of moving the `_.each` loop iterating on that into a function like `logicManager.findUsages(mugPath)`?


"wrapped a" -> "wrapped as a"


I think there's still some issues in the graphics transforms. For example $ctx.translate(0, 10) should move down, not up.


Beware, there's still quite a few bugs, trying to work them out now.


Why is it useful to explicitly call out the presence of C, but not M or A?  Does this just control whether linker relaxation is allowed to generate C.JAL etc?


It seems to work, create an issue ticket like i said ;-)


it's done


No need to test private methods. Just make sure they are tested via the public interface.


@SpongeUKAdministrator            ?


how nice to find that you have been working on this, Ignacio :-)


No need to test private methods


Its used above.


This change is not required


Created multidev environment for test 24: [ci-24](http://ci-24-ci-example-d8-composer.pantheonsite.io/) in site [ci-example-d8-composer](https://dashboard.pantheon.io/sites/c401fd14-f745-4e51-9af2-f30b45146a0c#ci-24).


Could you give some clue as to why this is needed. Issue https://github.com/adaptlearning/adapt-cli/pull/54 has questions

Ta, Ollie.


Ha! when I saw this commit message on https://github.com/dimagi/Vellum/pull/787 I thought you had put the question icon beside each path... that would be a nice addition too (scope creep).


Alright I'll add it to the maps.lst later. Yes it's fun, the original map has been in the rotation on the TastySpleen railz server for a couple of years and it always got good feedback from the rail folks.

@kaadmy, yep, the map is in master;)


Can this class extend NDArray or have an AbstractNDArray?  It seems so copy-pasted.  hashCode() and equals() are different.  The safety checks could be separated into some common methods like dimensionsSafetyCheck() or typeSafetyCheck().


Actually @tomka, I missed this the first time round because my example came from clicking on the top **upstream neuron**, but when you click on a downstream neuron these titles are also incorrect, wouldn't you say. Attached example is for top **downstream neuron**: `KCy 8639 AA` should be the `Postsyn. neuron` but is marked as `Presyn. neuron`. So PR#1412 is only half a fix. Sorry.

![image](https://cloud.githubusercontent.com/assets/23763/19986569/2cda2b0c-a20f-11e6-8f5c-d215549f20ac.png)


あー、しまった、以前commitし忘れた変更が混じっちゃったのか……。gh-pagesブランチでパッケージには影響ないので、とりあえずこのままで。文字コードはあとで直します。どうもありがとう。


PPPS.

After talking to @Grz3s I think we are good to keep the DB script.
However, let's not remove the SD2 script just yet. I want to investigate to understand why it failed in the first place.
Then I will remove it myself.


Are you going to keep Berserk Gene?


"falsiness" might bite the !text clause - "0" is the culprit


@codekaka run all


Ran all the analysis and here are the results
   COVERAGE
---------------
/src/path/to/file1/             43 %
/src/path/to/file2/             39 %
/src/path/to/file3/             73 %
/src/path/to/file4/             98 %
/src/path/to/file5/             54 %
/src/path/to/file6/             71 %

Dependency Changes:
---------------------
+ boto.py
+ pygithub.py
- pyunit

Found these duplicates:
-----------------------
[1] ....
[2] ....

DOCUMENTATION
------------------
@Class_M :
/** ....
*	....
*	....
*/

@method_A :
// ....
// ....
// ....

@method_B :
// ....
// ....
// ....


smthng broke camera...need to test. dont cherry-pick it


sounds like a good example for a tutorial! I am going to use it :)


yikes


2nd argument needs to be a list


oh well maybe not, nvm


Thanks, I committed the change


"0" evaluates to true, so we're cool.


Hey @mihaip, I found that it's cleaner to create a subclass of the compiler, like it did in [/rgpower/react-closure-compiler/commit/90be1d9](https://github.com/rgpower/react-closure-compiler/commit/90be1d90f239f5951270f5aeca2f3eac94bfc83d) rather than use reflection.

So you end up with:

```java
package com.google.javascript.jscomp;

public class CompilerAccessor {
  public static CompilerInput newExternInput(Compiler compiler, String name) {
    return compiler.newExternInput(name, null);
  }
}
```

That allows you keep using newExternInput and avoid using getSynthesizedExternsInputAtEnd, all the while respecting the access permissions of the Compiler type.

Then your addExterns method would read:

```java
  private void addExterns() {
    CompilerInput externsInput = CompilerAccessor.newExternInput(compiler, EXTERNS_SOURCE_NAME);
    addExternModule("React", "ReactModule", externsInput);
    addExternModule("ReactDOM", "ReactDOMModule", externsInput);
    addExternModule("ReactDOMServer", "ReactDOMServerModule", externsInput);
    compiler.reportCodeChange();
  }
```

Other changes I made to support the latest closure compiler changes were:

[/rgpower/react-closure-compiler/commit/ca9ea5c7](https://github.com/rgpower/react-closure-compiler/commit/ca9ea5c79d09bca92703c66849d66736a884068e)

and

[/rgpower/react-closure-compiler/commit/2a00a05](https://github.com/rgpower/react-closure-compiler/commit/2a00a050e2c124031bc0d8994944c55f01246eed)

Thanks again for creating this custom pass.  We use it all the time.


ok im fine with that


HybridVentilationEnhancement (lgu1234) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-IntegrationCoverage-Debug: OK (1772 of 1772 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-71.15%25-green.svg)


HybridVentilationEnhancement (lgu1234) - x86_64-Linux-Ubuntu-14.04-custom_check: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg)


Suggest "latestBacklogSize"


The only bad thing I see here is that you would have to add the library name to both this array and package.json if you need a new library, creating a duplicate definition.


newline :P


this is a blank line


I don't like how we're doing the method setup and caching all in here.  It should be separate to its own method.


Hi Reka with the nice codes! :)
This is a perfect solution, I just add a small remark. It also seemed to work when I took the second condition first, and after that I only had to research half of the first (double) condition. It looked like this:
        if (time > 200) {
            out = "Time out";
        } else if (ac%4 == 0){
            out = "check";
        } else {
            out = "Run Forest Rum!";
Cheers (just because of the rum ;)
Bea


Hi! This is breaking the recommended `go get` workflow for this command for Go 1.7 (the currently released version). As Go 1.8 isn't out yet, should this be reverted or held for that release?


develop (macumber) - x86_64-Linux-Ubuntu-14.04-clang-3.5: Build Failed

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@marcoturi We update to versions that we know are working. There shouldn't be any significant changes that break from 2.1.1 to 2.1.2, but we don't like to update to a version until we've tested it. :)


did #8


btw the rum was originally a misspelling, but I now like it...


Do we need to log something if it didn't match the expected types?


@Moejoe90 I create 3 wave sounds and load these with SoundPool library


Done.


I know this is basically what we had before but I think we need to have something like jep_init_numpy_support() for setting up the cached jmethodIDs and jclasses.


TeamCity Xbim :: Xbim Exchange :: XbimExchange [Build 195](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1355&buildTypeId=Xbim_XbimExchange_XbimExchange) is now running


It might make it difficult for new developers when they're adding a new library, as it is not obvious at all that you also have to add it here.


Hi,
Please, could somebody tell, how to exactly solve that error. I copied Mosh code, no issues, but when i build it the same problem occurred:
![capture](https://cloud.githubusercontent.com/assets/9081628/19987363/75d3711a-a223-11e6-8649-72bb72dc6401.PNG)


develop (macumber) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.svg)


I messed this up.  Originally I forked the file thinking we could do something clever for 1.8.  Then I backed it out when I realized we couldn't, but then I got too clever with the error message for Go 1.7 and now it won't build.  Fix pending...


yes.


os_2_0_develop (macumber) - x86_64-Linux-Ubuntu-14.04-clang-3.5: Build Failed

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Thanks!


TeamCity Xbim :: Xbim Exchange :: XbimExchange [Build 195](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1355&buildTypeId=Xbim_XbimExchange_XbimExchange) outcome was **SUCCESS**
Summary: Running Build time: 00:01:49


May I suggest using 230-on-66 also for PmenuSel, both for consistency and readility? Currently, it's still 187-on-66.

(On the other hand, Pmenu can perfectly stay 187-on-gray — it is still very readable and I don't even notice the foreground difference with the selected item: a brighter background calls for a brighter foreground, too.)


Thank you for the explanation!


Some fundamental scalar objects and expressions with examples of errors typed directly into IDLE.


Nice!


I just add another solution, I think Misi cleared my idea until it became quite nice. Otherwise I don`t know whether this is also one way to review to send my code, but I thought an alternative might still be ok. Otherwise I wouldn`t have anything to write / suggest.... :)
        int i = 0;
        String div = "";

        for (i = 0; i <= 100; i = i + 1) {

                if (i%3 == 0) {
                    div = "Fizz";
                }
                if (i%5 == 0) {
                    div = div+"Buzz";
                }
                if (div == "") {
                    System.out.println(i);
                } else {
                    System.out.println(div);
                    div = "";
                }


task list app


os_2_0_develop (macumber) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: Build Failed

![Build Badge](http://img.shields.io/badge/build%20status-failing-red.svg)


... Ok pls ignore my previous comment :)))


Why http without TLS?


TODO: clarify nomenclature: distinguish "raw" from the ACTUAL raw data being transferred/updated @512Hz


Yes.


I don't think `nil` should be possible but I'm not 100% sure so we should probably check it. We didn't have great validation on the server before, as you know, so there's a chance that some old packages might break here.


//check testing


*alpine


TeamCity Xbim :: Xbim Windows UI :: Xbim Windows UI [Build 173](http://xbimbuilds.cloudapp.net/viewLog.html?buildId=1356&buildTypeId=Xbim_XbimWindowsUi_XbimWindowsUi) is now running


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Summary: Running Build time: 00:00:37


Some of the dimensions code seems copy/pasted but I don't see a good way to make it reusable.


oops, oh well.
Next time.


Resolves #44


Looks good. please also update openapi spec (your verification step will fail if you don't)


I had SSL problems like we had with the telegram Version. As there is no sensitive data transmitted, I decided not to investigate this further.


should be audioserver for N


ENTÃO FICOU UMA DUVIDA, QUAL O BANCO DE DADOS QUE VOCÊ ESTA USANDO?


same here, I use Android Studio for Android, and the licensed IntelliJ for desktop/server straight up Java8 development.


no it's the 3rd argument. `Foo::bar($key,$val,$scope)`


For count($where) > 1 I'm sure you'll do better than my $where = "(" . implode(" OR ", $wheres) . ")";


AddEio2Table (JasonGlazer) - i386-Windows-7-VisualStudio-12: OK (2344 of 2345 tests passed, 420 test warnings)

 * 420 tests had: AUD diffs.
 * 1 test had: ERR diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.svg)


I haven't consciously been following any style. When I'm fixing bugs, I usually try to write a standalone reproducer to work with, and it's natural to turn that into a test case once I've fixed the issue.


was gutchi


fixed it with [#4866de8](https://github.com/Naoray/canvas/commit/4866de85845f6a31d408613147511cf60a804e4e)


@codekaka run all


Thx, clarification


Hey, I just tried your changes against the latest HEAD of `coreos-kubernetes` and it works great on Windows! I was wondering if you could submit it as a PR to `coreos-kubernetes` so that it can be merged in? I also run into a transient certificate generation error: `C:/Users/user/Desktop/coreos-kubernetes-master/lib/create_ssl.rb:62:in `initialize': BN lib (OpenSSL::PKey::RSAError)` Retrying worked fine, but it would be really cool if you can update it to retry, like here: https://github.com/mitchellh/vagrant/commit/79115d1ccc26cb4b3a2f375f88b44fc8df1bbffd#diff-459eccaf32bc596919e08917078e2525R20


Awesome thanks for the heads up do u happen to have an updated commit for N?


Ran all the analysis and here are the results
   COVERAGE
---------------
/src/path/to/file1/             43 %
/src/path/to/file2/             39 %
/src/path/to/file3/             73 %
/src/path/to/file4/             98 %
/src/path/to/file5/             54 %
/src/path/to/file6/             71 %

Dependency Changes:
---------------------
+ boto.py
+ pygithub.py
- pyunit

Found these duplicates:
-----------------------
[1] ....
[2] ....

DOCUMENTATION
------------------
@Class_M :
/** ....
*	....
*	....
*/

@method_A :
// ....
// ....
// ....

@method_B :
// ....
// ....
// ....


Great codes! I have learned a lot while reviewing... :)


Its load with LibGDX's .tmx file loader which breaks down the file into components for tile placement and specifications. The issue stems from the topside collision which I need to fix.


wow, that was fast. they probably had nasty bugs


Just tested chunk loading by running 2 diesel trains of mixed cars . leaving chunks to go to nether and returning to find 2 broken trains at 2 separate turns