[inst/site/create_table.R:19:58:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/create_table.R#L19) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  dp_selection = filter(data_df, V3 == sample(indexes, 1) ),
                                                         ^
```
[inst/site/create_table.R:21:62:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/create_table.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    "select * from taxonomy where V3 == ", sample(indexes, 1) )), times = 100
                                                             ^
```
[inst/site/merge_and_plot_bwa_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_bwa_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_gottcha2_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_kraken_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_and_plot_metaphlan_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_gottcha_assignments.R:11:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_gottcha_assignments.R#L11) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_gottcha_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/inst/site/merge_gottcha_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[R/load_bwa_assignment.R:21:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
            ^~~~
```
[R/load_bwa_assignment.R:21:21:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                    ^~~~~
```
[R/load_bwa_assignment.R:21:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                             ^~~~~
```
[R/load_bwa_assignment.R:21:39:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                                      ^~~~~~~~~
```
[R/load_bwa_assignment.R:25:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L25) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_bwa_assignment.R:25:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L25) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_bwa_assignment.R:32:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_bwa_assignment.R:32:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_bwa_assignment.R:33:16:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L33) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_bwa_assignment.R:42:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L42) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if (0 == length(df$LEVEL) ) {
                             ^
```
[R/load_bwa_assignment.R:43:18:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L43) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
                 ^
```
[R/load_bwa_assignment.R:60:10:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L60) *style:* **Variable or function name should be snake_case.**
```r
      df$ABUNDANCE <- df$ROLLUP / df$SUM * 100
         ^~~~~~~~~
```
[R/load_bwa_assignment.R:68:21:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignment.R#L68) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                    ^
```
[R/load_bwa_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_bwa_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_bwa_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha_assignment.R:20:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
  ^~~~
```
[R/load_gottcha_assignment.R:20:11:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
          ^~~~~
```
[R/load_gottcha_assignment.R:20:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                   ^~~~~
```
[R/load_gottcha_assignment.R:20:29:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                            ^~~~~~~~~
```
[R/load_gottcha_assignment.R:24:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha_assignment.R:24:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha_assignment.R:31:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_gottcha_assignment.R:31:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_gottcha_assignment.R:32:16:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_gottcha_assignment.R:51:19:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignment.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                  ^
```
[R/load_gottcha_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha2_assignment.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
  ^~~~
```
[R/load_gottcha2_assignment.R:19:11:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
          ^~~~~
```
[R/load_gottcha2_assignment.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                   ^~~~~
```
[R/load_gottcha2_assignment.R:19:29:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                            ^~~~~~~~~
```
[R/load_gottcha2_assignment.R:23:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L23) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha2_assignment.R:23:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L23) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha2_assignment.R:30:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L30) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_gottcha2_assignment.R:30:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L30) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_gottcha2_assignment.R:31:16:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_gottcha2_assignment.R:49:19:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignment.R#L49) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                  ^
```
[R/load_gottcha2_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha2_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_gottcha2_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_kraken_assignment.R:20:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
  ^~~~
```
[R/load_kraken_assignment.R:20:11:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
          ^~~~~
```
[R/load_kraken_assignment.R:20:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                   ^~~~~
```
[R/load_kraken_assignment.R:20:29:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                            ^~~~~~~~~
```
[R/load_kraken_assignment.R:24:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_kraken_assignment.R:24:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_kraken_assignment.R:31:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_kraken_assignment.R:31:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_kraken_assignment.R:32:16:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_kraken_assignment.R:46:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L46) *style:* **Variable or function name should be snake_case.**
```r
    df$ABUNDANCE <- df$ROLLUP / max_rollup * 100
       ^~~~~~~~~
```
[R/load_kraken_assignment.R:54:19:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignment.R#L54) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                  ^
```
[R/load_kraken_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_kraken_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_kraken_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_metaphlan_assignment.R:21:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_metaphlan_assignment.R:21:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_metaphlan_assignment.R:28:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignment.R#L28) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_metaphlan_assignment.R:28:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignment.R#L28) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_metaphlan_assignment.R:29:16:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignment.R#L29) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_metaphlan_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_metaphlan_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/load_metaphlan_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/merge_bwa_assignments_counts.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_bwa_assignments_counts.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_bwa_assignments_counts.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_bwa_assignments_counts.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_bwa_assignments_counts.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_bwa_assignments_counts.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
                   ^~~~~
```
[R/merge_bwa_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_bwa_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_bwa_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_bwa_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_bwa_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_bwa_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/merge_gottcha_assignments_count.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_gottcha_assignments_count.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_gottcha_assignments_count.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_gottcha_assignments_count.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_gottcha_assignments_count.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_gottcha_assignments_count.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
                   ^~~~~
```
[R/merge_gottcha_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_gottcha_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_gottcha_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_gottcha_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_gottcha_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_gottcha_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/merge_kraken_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_kraken_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_kraken_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_kraken_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_kraken_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_kraken_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/merge_metaphlan_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_metaphlan_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_metaphlan_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_metaphlan_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_metaphlan_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/merge_metaphlan_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- NULL # fix the CRAN note
                   ^~~~~~
```
[R/plot_bwa_assignment.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_bwa_assignment.R:21:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_bwa_assignment.R:21:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/plot_bwa_assignment.R:33:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L33) *style:* **Variable or function name should be snake_case.**
```r
  vals$ABUNDANCE <- vals$ABUNDANCE
       ^~~~~~~~~
```
[R/plot_bwa_assignment.R:36:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L36) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_bwa_assignment.R:41:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                          ^
```
[R/plot_bwa_assignment.R:41:91:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_bwa_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                                                                                ^
```
[R/plot_gottcha_assignment.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_gottcha_assignment.R:21:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_gottcha_assignment.R:21:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/plot_gottcha_assignment.R:33:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L33) *style:* **Variable or function name should be snake_case.**
```r
  vals$ABUNDANCE <- vals$ABUNDANCE * 100
       ^~~~~~~~~
```
[R/plot_gottcha_assignment.R:36:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L36) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_gottcha_assignment.R:41:27:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                          ^
```
[R/plot_gottcha_assignment.R:41:91:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_gottcha_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                                                                                ^
```
[R/plot_kraken_assignment.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_kraken_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_kraken_assignment.R:21:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_kraken_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_kraken_assignment.R:21:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_kraken_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/plot_kraken_assignment.R:33:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_kraken_assignment.R#L33) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_kraken_assignment.R:38:24:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_kraken_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                       ^
```
[R/plot_kraken_assignment.R:38:88:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_kraken_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                                                                                ^
```
[R/plot_merged_assignment.R:29:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L29) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- SUM <- value <- variable <- NULL # fix the CRAN note
  ^~~~
```
[R/plot_merged_assignment.R:29:11:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L29) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- SUM <- value <- variable <- NULL # fix the CRAN note
          ^~~~~
```
[R/plot_merged_assignment.R:29:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L29) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- SUM <- value <- variable <- NULL # fix the CRAN note
                   ^~~
```
[R/plot_merged_assignment.R:85:6:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L85) *style:* **Variable or function name should be snake_case.**
```r
  df$TAXA <- factor(x = df$TAXA, levels = unique(df$TAXA), ordered = T)
     ^~~~
```
[R/plot_merged_assignment.R:94:71:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  column_index <- c(1, project_names_order + 1, as.numeric(dim(df)[2]) )
                                                                      ^
```
[R/plot_merged_assignment.R:96:39:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L96) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  df <- dplyr::select(df, column_index )
                                      ^
```
[R/plot_merged_assignment.R:105:24:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L105) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = melted_df, ggplot2::aes(y = TAXA, x = variable, fill = value) ) +
                       ^
```
[R/plot_merged_assignment.R:105:93:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_merged_assignment.R#L105) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = melted_df, ggplot2::aes(y = TAXA, x = variable, fill = value) ) +
                                                                                ^
```
[R/plot_metaphlan_assignment.R:20:3:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_metaphlan_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_metaphlan_assignment.R:20:12:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_metaphlan_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_metaphlan_assignment.R:20:20:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_metaphlan_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- tool <- NULL # fix the CRAN note
                   ^~~~~~
```
[R/plot_metaphlan_assignment.R:32:8:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_metaphlan_assignment.R#L32) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_metaphlan_assignment.R:37:24:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_metaphlan_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ROLLUP) ) +
                       ^
```
[R/plot_metaphlan_assignment.R:37:85:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/R/plot_metaphlan_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ROLLUP) ) +
                                                                                ^
```
[tests/testthat/test_load_bwa_assignment.R:7:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L7) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(558) )
            ^
```
[tests/testthat/test_load_bwa_assignment.R:7:38:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L7) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(558) )
                                     ^
```
[tests/testthat/test_load_bwa_assignment.R:10:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L10) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
            ^
```
[tests/testthat/test_load_bwa_assignment.R:10:36:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L10) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
                                   ^
```
[tests/testthat/test_load_bwa_assignment.R:13:35:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L13) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                  ^
```
[tests/testthat/test_load_bwa_assignment.R:13:76:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L13) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                           ^
```
[tests/testthat/test_load_bwa_assignment.R:13:78:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L13) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                             ^
```
[tests/testthat/test_load_bwa_assignment.R:18:31:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L18) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
family_table <- dplyr::filter( dat, LEVEL == "species")
                              ^
```
[tests/testthat/test_load_bwa_assignment.R:21:26:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
ent_row <- dplyr::filter( family_table, TAXA == "Moraxella catarrhalis")
                         ^
```
[tests/testthat/test_load_bwa_assignment.R:36:40:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                       ^
```
[tests/testthat/test_load_bwa_assignment.R:36:81:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_bwa_assignment.R:36:83:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_bwa_assignment.R:37:40:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_bwa_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(dim(empty_df)[1], equals(0) )
                                       ^
```
[tests/testthat/test_load_gottcha_assignment.R:8:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(65) )
            ^
```
[tests/testthat/test_load_gottcha_assignment.R:8:37:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(65) )
                                    ^
```
[tests/testthat/test_load_gottcha_assignment.R:11:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
            ^
```
[tests/testthat/test_load_gottcha_assignment.R:11:36:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
                                   ^
```
[tests/testthat/test_load_gottcha_assignment.R:14:35:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                  ^
```
[tests/testthat/test_load_gottcha_assignment.R:14:76:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                           ^
```
[tests/testthat/test_load_gottcha_assignment.R:14:78:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                             ^
```
[tests/testthat/test_load_gottcha_assignment.R:17:1:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L17) *style:* **Lines should not be more than 100 characters.**
```r
# LEVEL	TAXA	ROLLUP	ASSIGNED	LINEAR_LENGTH	TOTAL_BP_MAPPED	HIT_COUNT	HIT_COUNT_PLASMID	READ_COUNT	LINEAR_DOC	NORM_COV
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_load_gottcha_assignment.R:21:32:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
species_table <- dplyr::filter( dat, LEVEL == "species")
                               ^
```
[tests/testthat/test_load_gottcha_assignment.R:24:26:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
ent_row <- dplyr::filter( species_table, TAXA == "Haemophilus influenzae")
                         ^
```
[tests/testthat/test_load_gottcha_assignment.R:38:40:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                       ^
```
[tests/testthat/test_load_gottcha_assignment.R:38:81:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_gottcha_assignment.R:38:83:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_gottcha_assignment.R:39:40:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha_assignment.R#L39) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(dim(empty_df)[1], equals(0) )
                                       ^
```
[tests/testthat/test_load_gottcha2_assignment.R:8:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(201) )
            ^
```
[tests/testthat/test_load_gottcha2_assignment.R:8:38:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(201) )
                                     ^
```
[tests/testthat/test_load_gottcha2_assignment.R:11:13:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
            ^
```
[tests/testthat/test_load_gottcha2_assignment.R:11:36:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
                                   ^
```
[tests/testthat/test_load_gottcha2_assignment.R:14:35:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                  ^
```
[tests/testthat/test_load_gottcha2_assignment.R:14:76:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                           ^
```
[tests/testthat/test_load_gottcha2_assignment.R:14:78:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                             ^
```
[tests/testthat/test_load_gottcha2_assignment.R:19:31:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L19) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
family_table <- dplyr::filter( dat, LEVEL == "family")
                              ^
```
[tests/testthat/test_load_gottcha2_assignment.R:22:26:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L22) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
ent_row <- dplyr::filter( family_table, TAXA == "Micrococcaceae")
                         ^
```
[tests/testthat/test_load_gottcha2_assignment.R:37:40:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                       ^
```
[tests/testthat/test_load_gottcha2_assignment.R:37:81:](https://github.com/seninp-bioinfo/MetaComp/blob/fc5b63745ca7ad9f41d71188b157445d948f4710/tests/testthat/test_load_gottcha2_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```


We didnot buy authorized recipes files, we randomly find some listed
recipes' file in internet. In your link recipe folder was password
protected. I think there is not problem in wrong input file. We use
gfortran compiler insted of f77 on which kikuchi was based. If you dont
mind you can help sharing your Recipe password so that we could again
compile with that recipes. if it is possible you can mail me from your
personal address it would for conversation.

Thank you so much for your reply.

On Wed, May 17, 2017 at 9:37 PM, kmo <notifications@github.com> wrote:

> I guess it may be the wrong compiled program (maybe the wrong Recipes,
> wrong compiler) or wrong input files.
> I can not help you now. Trial and Error !
> Or you provide more information, let's figure out.
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/likueimo/kikuchi_code/commit/8c09dbcac68f8bdad74c19c698d1fb2a8ff64f0f#commitcomment-22177851>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AaiTCIen5HDj0mjUqX5kaI2VimNMq1lMks5r6xfPgaJpZM4NU9wk>
> .
>


Agreed.  A total PITA.

I think that this change will help solve a lot of problems.  Thoughts?


Let's fix the indention here.


Yes, that's math (in a physics context).


``public function getId(): int``


``public function setName(string $name): Article``


WARNING! - it requires xCode for building, so I can't built only for Android I suppose...


After discussion earlier, I don't think we want lines 10-21.


``public function getCreatedAt(): \DateTime``


Just a heads up that you don't really need to create a 2nd file for this. It's cool for your testing purposes, but if you ever want to merge this project back into the main one then you would just add all the new code you're writing into the original ankhbot_client.rb file. You could also write all your code separately in a different file and then include it in this file. This will save you from also having to edit the ankhbot-ruby-bot.rb file.


#2 Timer should be restarted when user interacting with aplication (mouse OR keyboard).


I think there was a good reason for stripping off the attributes of character vectors used as a names attribute. Which attributes should be preserved? Why?

Note GNU R's behavior:

```.R
> x <- 1:3
> n <- c("a", "b", "c")
> class(n) <- "foo"
> names(x) <- n
> x
a b c
1 2 3
> attributes(names(x))
NULL
```


Get data from link with my secret key data


Fixed here https://github.com/restrictcontentpro/restrict-content-pro/pull/1157/commits/0839322c555de67e5d9347e247cfa0a942581c20


![](https://github.trello.services/images/mini-trello-icon.png) [Izrada "mockupa"](https://trello.com/c/HNzLHCAy/3-izrada-mockupa)


Listen to the man. There is also an undocumented command line flag that does the same.


Just curious?  Why were these files removed?


what for?


return $this;


if recaptcha responses a true value. Insert data to database using my sql


Well... I guess I have to install the Android SDK to run build command properly


No - we meant to delete this entirely. I'll add a task to the bosh links story.


Thanks, but it seems the reflection on the DirectBuffer is a lesser evil than reflection on the Unsafe (since we have to compile against both JDK8 and JDK9, the Unsafe.invokeCleaner can be reached via reflection only). If you know the reflection-free way to clean DIrectBuffer compilable under both jdk 8 and jdk9 then please let us know.


@cbruguera These were moved into sovrin-common.


## Global

| Changed            |   Status |
|:-------------------|---------:|
| `coverage`         |     0.28 |
| `metadata_passing` |     2    |
| `metadata_total`   |     2    |
| `nodes_count`      |    32    |
| `texts_passing`    |     4    |

## Words

| Changed   |   Status |
|:----------|---------:|
| `eng`     |    +6724 |
| `grc`     |    +4789 |

## Units

| Changed                                                 | Status   |
|:--------------------------------------------------------|:---------|
| `./data/tlg0059/tlg015/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng1.xml` | Deleted  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc1.xml` | Deleted  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg016/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng1.xml` | Deleted  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc1.xml` | Deleted  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg015/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | Passing  |
| `./data/tlg0059/tlg016/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/642)*


ddd


Hey Dorvk, I would like to inform you that the code you've entered is not determined as the main code.


Fixed wrong aspect ratio if Poster is not available


consider putting these times in some config object


Yeah. But it's valid call for Java 9 (no need --permit-illegal-access). Calling via reflection will stop working when you remove vm parameter (--permit-illegal-access).

Almost all illegal accesses in IDEA can removed by another API.

It's a good reason for creating first-level hack for it. For future


Remove magic number with enum


sortable episode list table thanks to [HomeUser](http://www.tivocommunity.com/community/index.php?threads/now-playing-more-php-code-part-ii.371838/page-3#post-11216699).


awesome!


Don't you think this `parseUpdateKeyword` check should be placed a bit earlier to cover parseUpdateKeyword and other parse..Keyword?


I see no reason that this would not be impacted by that issue the same way
that the use is

On May 17, 2017 12:23 PM, "bperrybap" <notifications@github.com> wrote:

> I'll check this later but have you verified that you can use the burn
> bootloader in the IDE to set the fuses?
> There has been a LONG outstanding bug in avrdude that breaks on all atmel
> ISP programmers if two back to back avrdude commands that access an atmel
> ISP programmer are done.
> The dragon being on of affected devices.
> The patch to avrdude to fix this is 6 lines of code and I've been trying
> to get Joerg to fix it for like 8+ years but he won't.
> The IDE can work around but the Arduino team has also refused to address
> it for the same amount of time.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/SpenceKonde/ATTinyCore/commit/89f4a1b834592c134db653e3f9e867a6eef991a7#commitcomment-22178331>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AGdyW--0zZK17-0J5GykAmZaTR3MX09Eks5r6x79gaJpZM4NeHuL>
> .
>


> Just curious? Why were these files removed?

Because there are not needed. But please if you have a question just open a issue and do not comment on commits. as such things a getting lost fast.


Found it. Thanks!


Hooray a use for all those schematics I have laying around.


And you can add check at start for valid Java 9 build, due old builds so crude


@jrmartin shall we raise an exception instead of swallowing it?


you mean the check for prevWhitespace, yes, it could be moved up


Trey


so you'd want to do this as 2 separate blocks: One to open then file, then within that, one to loop over all the new users and write them to the file.
```
# Open the file
open('userList.txt', 'a') do |file|
  # iterate over each user. Should change name newUsers to new_users to keep with naming conventions
  new_users.each do |user|
    # Write the new user to the file format for text interpolation is "#{variable_name}"
    file.puts "#{user}"
    # could also just do file.puts user
  end
end
```
Also, be advised that using the 'w' option here means that it will create a new file every time this runs which could be bad since Ankhbot might not always catch every file that is created. What would happen is Ruby writes the file with the current list of new users, five minutes or so later it runs again, and there are a few MORE new users and so it deletes the old file and writes a new one. When ankhbot pulls in the file it would only know about the 2nd set of users and miss the first. The better option here is to use the 'a' option which will constantly append to the end of the file. Then whenever you have Ankhbot run you'd make the command also overwrite this file once it reads it to clear it out.


The problem here was that IE9 did not recognise the script or jQuery so we had to _specify legacy document modes_ by using ``<meta http-equiv="X-UA-Compatible" content="IE=edge;" />``

Read more here:
http://stackoverflow.com/a/36023656/2154717


ahhh ok thanks Brett!


I would like to see here total food gain per turn as it's done in vanilla and as it shown on Report Screen. Food surplus we can still find on the downside of city's panel and on the leftside panel. So I would like to see this line as
iModifiedFood = Round(data.FoodPerTurn * growthModifier, 2);


Indeed: don't call a private method unless explicitly referred to in the manual. In this case, there is a different, more straightforward fix for your use case: make an explicit copy of the proxy yourself first and call Pyro4.async() on that copy.
```
proxy = Proxy("...")
asproxy = Proxy(proxy._pyroUri)
asproxy._pyroAsync()
asproxy.asynccall(...)

```

That said, I'm sorry this change broke your use case. I try hard to keep Pyro's API backwards compatible but sometimes sacrifices have to be made. In this case, it was needed to solve a nasty problem of your program running out of socket connections.

Perhaps I shouldn't have kept the return value of the async function and instead, return None there, to make it explicit that it doesn't give you a new object but instead modifies the one you pass into it. Code depending on the previous behavior will then immediately break rather than continuing on perhaps the wrong proxy object. Maybe I'll change this for the next release.


I mean we'd better handle all the keywords in a similar manner, not just `returning` one.


also change the -of+ in makefile to -of and see glitches


/* Set top box is a project to develop a cost effective and opensource digital video broadcasting for cable
 4k high definition mpeg 4, h.264 decoder
HDMI
USB
WIFI

*/


This bonus is applied at most once for each side, and not multiplied by anything...
So any changes by +- 4 will most likely not change the outcome.


Thanks for the new doc John.  It seems this doc assumes the Rpi BT module is linked to the hardware serial port on the RPI3/Rpi-Zero-W but many users have been either swapping the hardware and emulated serial ports or completely disabling the BT interface ( http://www.briandorey.com/post/Raspberry-Pi-3-UART-Overlay-Workaround ).  You might want to call out this issue to users (remind them if you will) in a troubleshooting section of this doc.


Created multidev environment [dgreat#ci-1](https://dashboard.pantheon.io/sites/41cad7fe-472d-43a9-a470-d391b9622376#ci-1).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1-dgreat.pantheonsite.io/)


It appears that the RSS feed contains gibberish due to the interactive graphics, so i imagine they took it off of rbloggers


## Global

| Changed            |   Status |
|:-------------------|---------:|
| `coverage`         |     0.28 |
| `metadata_passing` |     2    |
| `metadata_total`   |     2    |
| `nodes_count`      |    32    |
| `texts_passing`    |     4    |

## Words

| Changed   |   Status |
|:----------|---------:|
| `eng`     |    +6723 |
| `grc`     |    +4789 |

## Units

| Changed                                                 | Status   |
|:--------------------------------------------------------|:---------|
| `./data/tlg0059/tlg015/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng1.xml` | Deleted  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc1.xml` | Deleted  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg016/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng1.xml` | Deleted  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc1.xml` | Deleted  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg015/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | Passing  |
| `./data/tlg0059/tlg016/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/643)*


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/1cf2b536-cbe5-4bbb-ab2c-c33975ffad90 "simple-toolchain-20170517171141258"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/c1358398-adb5-4c4b-8688-fb98dd3b801c "simple-toolchain-20170517171141258") deployed [simple-toolchain-20170517171141258](https://github.com/jerome-lanneluc/simple-toolchain-20170517171141258/releases/tag/deploy-ibm-yp-us-south-jerome_lanneluc-fr.ibm.com-dev-20170517-172723 "deploy-ibm-yp-us-south-jerome_lanneluc-fr.ibm.com-dev-20170517-172723") to [dev](https://console.ng.bluemix.net/apps/e4b30c24-bb22-4b77-a56d-de2b8370b5f6?env_id=ibm:yp:us-south "ibm:yp:us-south:jerome_lanneluc@fr.ibm.com:dev"), including this commit


This is not the full implementation. Some more changes to come.


I was thinking that some of them are different. returning *has* to be preceded by a space, others can be preceded by ( for instance.


I'd add a short description to replace this file.  Just something with a brief overview like "Basic react example app using x,y,z that does ____ for _____".


@tarelli The method already throws an exception that the GeppettoManager handles, this piece was committed by mistake as part of my debugging but it didn't provide any more details than the already provided by GeppettoManager. I removed it already


Created multidev environment [ci-drops-8#c8-65](https://dashboard.pantheon.io/sites/689219ca-6583-4af8-ab05-2cebf6ef79a0#c8-65).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://c8-65-ci-drops-8.pantheonsite.io/)


I have done after this commit, my version is up to date now


Build instructions for OpenSuse require obs-build but no obs-build in Leap 42.2 repositories, suggests?


@LKDevelopment Also erst bekam ich den Fehler das "YamsuiteBoardController" nicht existiert, dann hab ich "composer update" gemacht, jetzt bekomm ich den Fehler das "Controller" (aus YamsuiteCore) nicht existiert.


Hello. I'm trying to run lineageos-14.1 on markw. I made some changes to the device tree(gps, ipacm), but I still use your cm-13.0 vendor repo.
I also made some changes to the kernel so that the build was successful. My kernel repo:
[https://github.com/anomalchik/android_kernel_xiaomi_msm8953](url)
After all this, I was able to get a dumpstate_log(after kernel boot make quick press [volume+] + [volume -] +
 [power button]. You get short vibration. Wait for repeated vibration. Back to recovery and go to data/user_de/com.android.shell)
From this log we know that surfaceflinger crash with fatal error.
See part this log: [https://pastebin.com/wK04jpeg](url)
Unfortunately I have no idea how this can be fixed, but perhaps all of the above will help you.

P.S. Sorry for my bad english.


Oh, also wenn ich "class YamsuiteBoardController extends \YamSuite\YamSuiteCore\Http\Controllers\Controller" schreibe statt dem use am Anfang funktionierts ^^


Il y a encore des trucs que je trouve pas marquant... Par exemple, la séparation lib / render_engine / tests, c'est assez technique.


Okay, will add to math.


die Zeile ist vom Sinn aber falsch. eine Route wird immer einen Controller returnen
Wäre hier: Route::get('/yamsuite/add-board','..\BoarController@addboard');


Auf diese Anonymus closures sollte verzichtet werden und direkt auf den Controller gegangen werden


It’s a bit of a mess, honestly! I did what I could 😛


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/1cf2b536-cbe5-4bbb-ab2c-c33975ffad90 "simple-toolchain-20170517171141258"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/c1358398-adb5-4c4b-8688-fb98dd3b801c "simple-toolchain-20170517171141258") deployed [simple-toolchain-20170517171141258](https://github.com/jerome-lanneluc/simple-toolchain-20170517171141258/releases/tag/deploy-ibm-yp-us-south-jerome_lanneluc-fr.ibm.com-dev-20170517-173604 "deploy-ibm-yp-us-south-jerome_lanneluc-fr.ibm.com-dev-20170517-173604") to [dev](https://console.ng.bluemix.net/apps/280c610d-5396-436c-9092-f5342c170c6b?env_id=ibm:yp:us-south "ibm:yp:us-south:jerome_lanneluc@fr.ibm.com:dev"), including this commit


Trying to re-create the sample site on dev.benalloway.com using bootstrap from the ground up. instead of splicing it in mid game. learning simplistic approaches for getting same results.


nilsli.com


footer is better added in application.html.erb
and it can be refactor into a partial : _footer.html.erb
please see how I did that for views/shared/_header.html.erb in the application.html.erb
footer's css can just added in application.scss


bg


![](https://github.trello.services/images/mini-trello-icon.png) [Concept](https://trello.com/c/iswloL1h/4-concept)


ajoute le -y pour pas avoir besoin de confirmer l'installation


They are caused by an improper use of `everything()`. Authors were just notified.


@ryansmith94 are you OK with this as a fix for an instance where timefinish isn't available?


You’ve gotta go via `git mv` itself. [And also futz with it a bit.](https://twitter.com/ticky/status/864585682794053632)


Don't forget to handle missingmapping event.


Me equivoqué. Sí se actualiza automáticamente al después de unos segundos al cambiar de pestaña.


Please use cl-lib. It's a better choice these days.


## Global

| Changed            |   Status |
|:-------------------|---------:|
| `coverage`         |     0.07 |
| `metadata_passing` |     2    |
| `metadata_total`   |     2    |

## Units

| Changed                             | Status   |
|:------------------------------------|:---------|
| `./data/tlg0059/tlg015/__cts__.xml` | New      |
| `./data/tlg0059/tlg016/__cts__.xml` | New      |
| `./data/tlg0059/tlg015/__cts__.xml` | Passing  |
| `./data/tlg0059/tlg016/__cts__.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/645)*


Please Sir, accept my program @malep2007


You are right - this can now be removed given our substitution rather than removal.


You can get the last element of a list like this:
```python
dir[-1]
```


Scratch that. I just ran the tests against it and while it works well for timefinish, the test is now erroring out on sumgrades


add new line plz


<!DOCTYPE html>

    <meta charset="utf-8" />

    <meta name="format-detection" content="telephone=no" />
    <meta name="msapplication-tap-highlight" content="no" />
    <meta name="viewport" content="user-scalable=no, initial-scale=1, maximum-scale=1, minimum-scale=1, width=device-width" />

    <meta http-equiv="Content-Security-Policy" content="default-src * 'unsafe-inline'; style-src 'self' 'unsafe-inline'; media-src *" />

    <link rel="stylesheet" type="text/css" href="css/index.css" />
    <title>Hello World</title>

Meu primeiro APP - Professor Rafael

Conectar para Dispositivo Mobile

Lendo o seu Mobile

<title>Exemplo 35 - JQuery</title>

<button>Liga - Desliga</button>

![lampada-acesa](https://cloud.githubusercontent.com/assets/28762201/26167958/d76e81f6-3b0e-11e7-9c5c-3c8b4d0aecba.jpg)
![lampada_apagada](https://cloud.githubusercontent.com/assets/28762201/26167959/d7709518-3b0e-11e7-81fc-5bfb10a2d651.jpg)


@lwaldron `type_convert` is a function in `readr` which removes the need to loop through all columns


https://github.com/sparky4/16/commits/2f1eeec31951744f38a172b730340610330ad754 the break happends between this and feb 22


A more robust way to join paths is this
```python
os.path.join(str(dir), file_name)
```


Sure, I’ll shift it. I think this made more sense in my head transitionally before I moved stuff into subdirectories!


Fixed: https://github.com/gradle/gradle/commit/d397b258ed9b53c3cf95f64182b0340c89c22caf


[Your benchmark job](https://github.com/JuliaLang/julia/commit/be004c1bfebb585932c78c8922b06bde049fb2cb#commitcomment-22178786) has completed - no performance regressions were detected. A full report can be found [here](https://github.com/JuliaCI/BaseBenchmarkReports/blob/a009ae22d7ebe339014f72bdeb3b275e78036e11/be004c1_vs_6bdb395/report.md). cc @jrevels


See line 66


You can shorten this:
```python
 if os.path.isfile(path):
    ...
```


See line 68


Link binary to libtcmalloc_minimal, or LD_PRELOAD it, and you'll be good.

But just cannot work to try to replace system malloc from loadable/unloadable plugin.


Well, i think the wiki would be a bit too much, the docu directly in the actors is just fine. Though, if you - AFA - ever consider to take the code and put it onto the repo at the Realm667 for other people to take advantage, this might already a good start :)


## Global

| Changed            |   Status |
|:-------------------|---------:|
| `coverage`         |     0.28 |
| `metadata_passing` |     2    |
| `metadata_total`   |     2    |
| `nodes_count`      |    32    |
| `texts_passing`    |     4    |

## Words

| Changed   |   Status |
|:----------|---------:|
| `eng`     |    +6723 |
| `grc`     |    +4789 |

## Units

| Changed                                                 | Status   |
|:--------------------------------------------------------|:---------|
| `./data/tlg0059/tlg015/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng1.xml` | Deleted  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc1.xml` | Deleted  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg016/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng1.xml` | Deleted  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc1.xml` | Deleted  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg015/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | Passing  |
| `./data/tlg0059/tlg016/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/646)*


@ehborisov would it be possible to make it into a release anytime soon? I see that this change was done after the current release (https://github.com/jenkinsci/allure-plugin/compare/allure-jenkins-plugin-2.15...master).


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/1cf2b536-cbe5-4bbb-ab2c-c33975ffad90 "simple-toolchain-20170517171141258"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/c1358398-adb5-4c4b-8688-fb98dd3b801c "simple-toolchain-20170517171141258") deployed [simple-toolchain-20170517171141258](https://github.com/jerome-lanneluc/simple-toolchain-20170517171141258/releases/tag/deploy-ibm-yp-us-south-jerome_lanneluc-fr.ibm.com-dev-20170517-174640 "deploy-ibm-yp-us-south-jerome_lanneluc-fr.ibm.com-dev-20170517-174640") to [dev](https://console.ng.bluemix.net/apps/5f04731c-177b-485c-9b51-a45ddeeb9bbe?env_id=ibm:yp:us-south "ibm:yp:us-south:jerome_lanneluc@fr.ibm.com:dev"), including this commit


That's what I expected.

As Rachael already stated: It's not the scripts or models, so there is no need to mess around with AFA's light actors.


cc @minrk

In hindsight I should have put this in a PR for comments.  But review of this would be appreciated.


*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/647)*


Done! Thanks for the update :smile:


Typically these pipelines will run unsupervised, so it's better to fail if the directory is not empty and give a `--force` option to override


See `os.path.join()`


Suggestion: try computing the same, but only for blocked pawns.
First block, and then destroy !

Version 1
```
// Multiple attacks on blocked weak pawns insufficiently defended
 b = shift<Up>(pos.pieces()) &  ei.pe->weakPawns[Them] & ei.attackedBy2[Us] & ~ei.attackedBy2[Them];
 score += ThreatOnWeakPawn * popcount(b);
```

Version 2

```
// Serious pressure on blocked weak pawns
 b = shift<Up>(pos.pieces()) &  ei.pe->weakPawns[Them] & ei.attackedBy2[Us];
 score += ThreatOnWeakPawn * popcount(b);
```


Ха слабак


See `os.path.basename()`


Files should not be moved. We leave them where they are, as we can use them as input no matter what


Ahja danke, dass ist viel Besser :D


Преобразовывать данные лучше в момент их получения от пользователя


Настрой редактор на отступ ровно в 2 проблела. Причем, именно пробела, а не таба. Т.е. должна быть замена табов на пробелы, т.н. soft tabs. Найди в интернете как сделать soft tabs для твоего редактора


指摘部を修正しようと思いましたが、どれがBAD2なのかファイルをみた時点では、よくわからず…
BAD1とBAD2が作者的に逆であればptextの位置変えのみの修正です。

隠しキャラ二人のイメージ花について追記してもよろしいでしょうか


Можно вызывать to_f сразу после chomp: `gets.chomp.to_f`


Используй elsif, вместо вложенного if


Зачем вычислять квадратный корень дважды? Помести значение в переменную и используй ее


Лучше сначала определить большую сторону и потом посчитать теорему пифагора, нежели считать сразу для всех случаев.


144935867-User-file-with-RoomAirSettingsAirflowNetwork-is-failing-with-fatal-error-#6086 (lgu1234) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-IntegrationCoverage-Debug: OK (1898 of 1898 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.svg) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-71.5%25-green.svg)


I would suggest to apply this to the 2016.2.x label too.


Congratulations!


И тут тоже надо сначала определить гипотенузу, затем уже считать уравнение Пифагора.


And so Dr. OZ has not been seen again . . .


144935867-User-file-with-RoomAirSettingsAirflowNetwork-is-failing-with-fatal-error-#6086 (lgu1234) - x86_64-Linux-Ubuntu-14.04-custom_check: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.svg)


Основание и высота не обязательно целые. Тем более, при делении целых чисел дробная часть отбрасывается, т.е. результат может быть не верным.


Bawimy się w edycje całej strony czy tylko formularza i tego obrazka? Jeśli formularze i obrazka to po co nam cała strona widoczna?


LGTM


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/c2e7bedd-6bf4-48c0-ace6-c8797683b072 "iitp-ibmjava8"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/a54a9aa0-69d7-477b-81e4-bacdf80961b7 "hello-world-20170515143722660") deployed [iitp-ibmjava8](https://github.com/erzz/iitp-ibmjava8/releases/tag/deploy-ibm-yp-us-south-Web-and-Mobile-Infrastructure-Operations-IITP-US-20170517-175522 "deploy-ibm-yp-us-south-Web-and-Mobile-Infrastructure-Operations-IITP-US-20170517-175522") to [IITP-US]( "ibm:yp:us-south:Web and Mobile Infrastructure Operations:IITP-US"), including this commit


Thanks!


Нужен ef572388e8006dcf08a16954f731341ffee1abcc


Heads up! This function signature change has been reverted in https://github.com/symphonycms/symphony-2/pull/2676/commits/30294682f2f39962553668e4498e7ade778f8cc9!


spaces for cpp not tabs.


boomix sucks


This seems like a very healthy server space reduction - I'm hoping the testing goes well!


1) I haven't heard the name OS/2 is eons! 2) 🥇 for actually give a whit about such deployments.


Has already been addressed in the next commit.


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/a1c1f084-c18b-4ecb-99f8-9a9b22da21b5 "FB Face Recognition"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/63e7d3d4-ea51-4079-91c8-7e11b1d3f83b "FB Face Recognition") deployed [FB-Face-Recognition](https://github.com/iris-bot/FB-Face-Recognition/releases/tag/deploy-ibm-yp-us-south-iris-bot-dev-20170517-175737 "deploy-ibm-yp-us-south-iris-bot-dev-20170517-175737") to [dev](https://console.ng.bluemix.net/apps/47bcbc3c-0115-4065-99e5-49b693b7caac?env_id=ibm:yp:us-south "ibm:yp:us-south:iris-bot:dev"), including this commit


Updated GameController


@Adorfer It is already, I fixed it in both branches.


sir!
how we can selection on condition based?


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/e27de958-d171-4b7b-8868-9c548d6636d3 "simple-container-may16test"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/68f6b4e8-10ad-41d0-ae60-98cc1e2d2c13 "hello-world-20170516224653340") deployed [container-test](https://github.com/vksinghibm/container-test/releases/tag/deploy-ibm-yp-us-south-vksingh-us.ibm.com-demo2-20170517-175845 "deploy-ibm-yp-us-south-vksingh-us.ibm.com-demo2-20170517-175845") to [demo2]( "ibm:yp:us-south:vksingh@us.ibm.com:demo2"), including this commit


By that I mean Game has an endTurn method. Probably not the best description of the change.


That's not quite how simulation works. Simulation is where you could create your data by running the program forward.

For example, suppose I wanted to create three clusters of points. I could simulate these points by choosing three centers and then generating points around them. We wanted to know what it would look like if the centers were in different places that's easy to change in a simulation.

Inference is when we have the points and would like to know what were the most likely centers chosen. In this cases, it's trickier since it will be very inefficient to keep simulating clusters of points hoping we get ones that look like our data and peaking at what the centers were in those cases (that's rejection sampling).


README file


What's an inference rule?


This is in every test -- use a `@Before` to make it more DRY


Thanks for detailed comments. Look good to me.


ça sens le newbie ça


most appreciated :+1:


*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/648)*


Change the theme here if you want to alter the themes of the marginal plots


Congrats! This is a very good week for Stockfish.


iOiOiOiOiO låter det när ambulansen kommer för att hämta mig


`ggMarginal` aligns the "panels" of the marginal plots with  panel of the of the scatter plot.


var nombre
	var edad
	var horasTrabajadasTotal
	var habilidad

	method trabaja(cantHoras,unaPropiedad){
		unaPropiedad.disminuyeHorasrestantes(habilidad.porcentaje() + cantHoras)
		self.aumentaHorasTrabajadas(habilidad.porcentaje()+cantHoras)
	}

	method aumentaHorasTrabajadas(cantHoras){
		horasTrabajadasTotal+=cantHoras
	}


...I've changed the alignment here, so that the axis of the marginal plots align with the scatter plot (note, this works for the example I showed, but you may have to alter for other cases like `type = "boxplot"`).


	var nombre
	var edad
	var horasTrabajadasTotal
	var habilidad

	method trabaja(cantHoras,unaPropiedad){
		unaPropiedad.disminuyeHorasrestantes(habilidad.porcentaje() + cantHoras)
		self.aumentaHorasTrabajadas(habilidad.porcentaje()+cantHoras)
	}


now between
af2715fef8681d909afe82f7baaf5e13baabb76f
and
c99bda70e2b46d085d3ba7aa951117bcd737c208