**[unitTests_js_branches run failed](http://jenkins.wikia-prod:8080/job/unitTests_js_branches/40788/testReport/) for this commit**


Is there any update on when we will be able to use acdcli again?


Exactly


I believe you can do this. It is usable in its zero value state. This would be better.

var bb bytes.Buffer
err := before.Encode(&bb)


Hi. They open cleanup method to unsafe.

```java
sun.misc.Unsafe.invokeCleaner(java.nio.ByteBuffer directBuffer)
```

Thanks


Hmm, `rate`, `change` and `rate of change` might all be Math terms?  Does it make sense to have them here?


А зачем умножать на 1?


Closes https://github.com/spinnaker/spinnaker/issues/1632.


@jonmifsud are you able to reproduce the bug on a new install ?


There are some other things in the code above this have are raising flags with me.


Why is there no new line at the end of the file?


OR
 from line 104 to 110. I put break point in line 108 and debug after it goto Declaration funtion in file .gitignore
result after run or debug this program stopped when i write or click on button search on bar


Преобразовывать данные стоит в момент их получения. И переменную лучше назвать более конкретно, например, `ideal_weight`


Make sure you are running the code through golint on save

https://github.com/golang/lint


for this to work reliably on 0.4 I'd advise adding `Compat 0.7.9` to `REQUIRE` and a `using Compat` here

(https://github.com/JuliaLang/Compat.jl/commit/8468afb0c11e1c51e2217913cc635b077f3064e6)


#1 #2 Command pattern is done here. However, the noisepy interface for command line is not working and needs to be refactored.


**Simplify Login Page**


Above I see a function named `snapshotToRecord ` that takes a Snapshot pointer. Wondering why that is not part of the stateful API since it is the only parameter being passed to `snapshotToRecord`


... que has cambiado?


This is a good change.


**要確認:BaseAIの難易度はどっちが強い?**


I wanted to at least put them down somewhere, should I move them to math?


thanks a lot 👍


#6118-VRF-Sizing-Problem-and-PLR-error (rraustad) - x86_64-MacOS-10.9-clang: OK (2490 of 2491 tests passed, 6 test warnings)

Messages:

 * 6 tests had: ERR diffs.

Failures:

EnergyPlusFixture Test Summary
 * Passed: 467
 * Failed: 1

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.png)


won't this set it to empty if it had originally been not set at all?


I think namespace only useful with interfaces since `URI` is a class `fromFsPath`can be a static method. I've seen that `vscode.Uri` already has [vscode.Uri.file](https://github.com/Microsoft/vscode-uri/blob/master/lib/index.ts#L217). Could we get away just by calling it? And maybe name ours also `file`.


Здесь ни к чему такое выравнивание присваивания. Потому что это разные вычисления, не однотипные. их вообще можно пустой строкой отделить.


Thanks lamby !


Согласен, смысла мало)


Настрой редактор на отступ ровно в 2 проблела. Причем, именно пробела, а не таба. Т.е. должна быть замена табов на пробелы, т.н. soft tabs. Найди в интернете как сделать soft tabs для твоего редактора


[Your benchmark job](https://github.com/JuliaLang/julia/commit/a9d418eba943162e13046b4eddb09bf0dd6c0da9#commitcomment-22177931) has completed - no performance regressions were detected. A full report can be found [here](https://github.com/JuliaCI/BaseBenchmarkReports/blob/c50fdef09f6a45f7f1e1ee8da66a430a5e103c6c/a9d418e_vs_6bdb395/report.md). cc @jrevels


It's an error if SULONG_HOME is empty, and mx will error out with a bad `-p` argument below if unset.
```ruby
raise 'You need to set SULONG_HOME' unless sulong_home
```


## Global

| Changed            |   Status |
|:-------------------|---------:|
| `coverage`         |     0.18 |
| `metadata_passing` |     2    |
| `metadata_total`   |     2    |
| `nodes_count`      |    32    |
| `texts_passing`    |     4    |
| `texts_total`      |     4    |

## Words

| Changed   |   Status |
|:----------|---------:|
| `eng`     |    +6724 |
| `grc`     |    +4789 |

## Units

| Changed                                                 | Status   |
|:--------------------------------------------------------|:---------|
| `./data/tlg0059/tlg015/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg016/__cts__.xml`                     | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | New      |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | New      |
| `./data/tlg0059/tlg015/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg015/tlg0059.tlg015.perseus-grc2.xml` | Passing  |
| `./data/tlg0059/tlg016/__cts__.xml`                     | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-eng2.xml` | Passing  |
| `./data/tlg0059/tlg016/tlg0059.tlg016.perseus-grc2.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/641)*


Created multidev environment [ci-drops-8#c8-64](https://dashboard.pantheon.io/sites/689219ca-6583-4af8-ab05-2cebf6ef79a0#c8-64).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://c8-64-ci-drops-8.pantheonsite.io/)


Дискриминант выводится в каждом случае, лучше вынести тогда это из условия


This needs to call `getWorldInfo()` since the method is not always returning the same field. Refer to the issue of the commit that I made attempting to originally resolve the issue with, and refer to the reasoning that worldInfo can be null on dummy worlds created by mods.


Зачем вычислять квадратный корень дважды? Помести значение в переменную и используй ее


Or it should be named `URI`.


Putting them down somewhere was a good first step.  Assuming that they are used in a mathematical context, then yes, please.


@nanosoldier `runbenchmarks("parse", vs = "@6bdb3950bdf64152")`


This function looks funny to me. You are asking for data that implements the reader. Then use are decoding the reader from the cache (what is that doing)? Then you perform a type assertion to the concrete on line 309, the decoupling is gone. You assume this will always be a *goavro.Record.

Then you get the snapshots data, which is a list of generic items
snapRecords := data.([]interface{})

Which you range over again and perform more type assertions.

So not knowing anything, things are very abstracted here and I would want to know why? Is there a way to get back to the type system, even if you use different caches for different typed values? Just throwing stones.


Legal!

Esse if aqui não tem problema, a ideia era evitarmos um if para cada operação, que neste caso você resolveu com enum e método abstrato.


O nome da classe poderia ser apenas `Operacao`, não?


If you find yourself requiring casts from `List<T>` to `ArrayList<T>`, something is wrong. Here, you just need to make your declaration of `selectedMethods` broader. Change to

```.java
   List<SelectedMethod> selectedMethods
```
and no cast is necessary.


@zhangb1 , at least based on the test input files you gave me earlier, index 36 isn't the `Amino_Acid_Change` but `Transcript_ID`... have things changed on the input side?


In my example, it is used multiple times as the rate of change for temperature. So not exactly sure.


first branch


``@ORM\Entity()``


what good homie


what? why this second bit?


@glarrain Oh wow good catch! Thank you!


Ok, let me finish review today, and then we can merge it.


Cannot be named as `URI`, right? That is the default export.


I move it into a static method.


[inst/site/create_table.R:19:58:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/create_table.R#L19) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  dp_selection = filter(data_df, V3 == sample(indexes, 1) ),
                                                         ^
```
[inst/site/create_table.R:21:62:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/create_table.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    "select * from taxonomy where V3 == ", sample(indexes, 1) )), times = 100
                                                             ^
```
[inst/site/merge_and_plot_bwa_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_bwa_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_bwa_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_gottcha2_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_gottcha2_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_kraken_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_kraken_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:12:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L12) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:13:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L13) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
taxonomyLevelArg <- args[3]
^~~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:15:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L15) *style:* **Variable or function name should be snake_case.**
```r
plotTitleArg <- args[4]
^~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:16:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L16) *style:* **Variable or function name should be snake_case.**
```r
plotFileArg <- args[5]
^~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- args[6]
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:22:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L22) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- args[7]
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:24:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L24) *style:* **Variable or function name should be snake_case.**
```r
  rowLimitArg <- 60
  ^~~~~~~~~~~
```
[inst/site/merge_and_plot_metaphlan_assignments.R:25:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_and_plot_metaphlan_assignments.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  sortingOrderArg <- "abundance"
  ^~~~~~~~~~~~~~~
```
[inst/site/merge_gottcha_assignments.R:11:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_gottcha_assignments.R#L11) *style:* **Variable or function name should be snake_case.**
```r
srcFile <- args[1]
^~~~~~~
```
[inst/site/merge_gottcha_assignments.R:14:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/inst/site/merge_gottcha_assignments.R#L14) *style:* **Variable or function name should be snake_case.**
```r
destFile <- args[2]
^~~~~~~~
```
[R/load_bwa_assignment.R:21:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
            ^~~~
```
[R/load_bwa_assignment.R:21:21:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                    ^~~~~
```
[R/load_bwa_assignment.R:21:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                             ^~~~~
```
[R/load_bwa_assignment.R:21:39:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  levels <- TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                                      ^~~~~~~~~
```
[R/load_bwa_assignment.R:25:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L25) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_bwa_assignment.R:25:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L25) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_bwa_assignment.R:32:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_bwa_assignment.R:32:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_bwa_assignment.R:33:16:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L33) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_bwa_assignment.R:42:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L42) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if (0 == length(df$LEVEL) ) {
                             ^
```
[R/load_bwa_assignment.R:43:18:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L43) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
                 ^
```
[R/load_bwa_assignment.R:60:10:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L60) *style:* **Variable or function name should be snake_case.**
```r
      df$ABUNDANCE <- df$ROLLUP / df$SUM * 100
         ^~~~~~~~~
```
[R/load_bwa_assignment.R:68:21:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignment.R#L68) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                    ^
```
[R/load_bwa_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_bwa_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_bwa_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha_assignment.R:20:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
  ^~~~
```
[R/load_gottcha_assignment.R:20:11:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
          ^~~~~
```
[R/load_gottcha_assignment.R:20:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                   ^~~~~
```
[R/load_gottcha_assignment.R:20:29:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                            ^~~~~~~~~
```
[R/load_gottcha_assignment.R:24:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha_assignment.R:24:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha_assignment.R:31:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_gottcha_assignment.R:31:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_gottcha_assignment.R:32:16:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_gottcha_assignment.R:51:19:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignment.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                  ^
```
[R/load_gottcha_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha2_assignment.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
  ^~~~
```
[R/load_gottcha2_assignment.R:19:11:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
          ^~~~~
```
[R/load_gottcha2_assignment.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                   ^~~~~
```
[R/load_gottcha2_assignment.R:19:29:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                            ^~~~~~~~~
```
[R/load_gottcha2_assignment.R:23:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L23) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha2_assignment.R:23:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L23) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_gottcha2_assignment.R:30:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L30) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_gottcha2_assignment.R:30:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L30) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_gottcha2_assignment.R:31:16:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_gottcha2_assignment.R:49:19:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignment.R#L49) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                  ^
```
[R/load_gottcha2_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_gottcha2_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_gottcha2_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_kraken_assignment.R:20:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
  ^~~~
```
[R/load_kraken_assignment.R:20:11:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
          ^~~~~
```
[R/load_kraken_assignment.R:20:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                   ^~~~~
```
[R/load_kraken_assignment.R:20:29:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- COUNT <- ABUNDANCE <- NULL
                            ^~~~~~~~~
```
[R/load_kraken_assignment.R:24:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_kraken_assignment.R:24:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_kraken_assignment.R:31:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_kraken_assignment.R:31:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L31) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_kraken_assignment.R:32:16:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L32) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_kraken_assignment.R:46:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L46) *style:* **Variable or function name should be snake_case.**
```r
    df$ABUNDANCE <- df$ROLLUP / max_rollup * 100
       ^~~~~~~~~
```
[R/load_kraken_assignment.R:54:19:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignment.R#L54) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    as.data.frame( dplyr::select(df, LEVEL, TAXA, COUNT, ABUNDANCE))
                  ^
```
[R/load_kraken_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_kraken_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_kraken_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_metaphlan_assignment.R:21:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_metaphlan_assignment.R:21:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/load_metaphlan_assignment.R:28:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignment.R#L28) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
      ^
```
[R/load_metaphlan_assignment.R:28:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignment.R#L28) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( 0 == file_info$size ) {
                          ^
```
[R/load_metaphlan_assignment.R:29:16:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignment.R#L29) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    data.frame( LEVEL = character(), TAXA = character(), COUNT = integer(), ABUNDANCE = double())
               ^
```
[R/load_metaphlan_assignments.R:17:7:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
      ^
```
[R/load_metaphlan_assignments.R:17:30:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/load_metaphlan_assignments.R#L17) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  if ( !file.exists(filepath) ) {
                             ^
```
[R/merge_bwa_assignments_counts.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_bwa_assignments_counts.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_bwa_assignments_counts.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_bwa_assignments_counts.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_bwa_assignments_counts.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_bwa_assignments_counts.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
                   ^~~~~
```
[R/merge_bwa_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_bwa_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_bwa_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_bwa_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_bwa_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_bwa_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/merge_gottcha_assignments_count.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_gottcha_assignments_count.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_gottcha_assignments_count.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_gottcha_assignments_count.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_gottcha_assignments_count.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_gottcha_assignments_count.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- COUNT <- NULL # fix the CRAN note
                   ^~~~~
```
[R/merge_gottcha_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_gottcha_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_gottcha_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_gottcha_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_gottcha_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_gottcha_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/merge_kraken_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_kraken_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_kraken_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_kraken_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_kraken_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_kraken_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/merge_metaphlan_assignments.R:19:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_metaphlan_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- NULL # fix the CRAN note
  ^~~~~
```
[R/merge_metaphlan_assignments.R:19:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_metaphlan_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- NULL # fix the CRAN note
           ^~~~
```
[R/merge_metaphlan_assignments.R:19:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/merge_metaphlan_assignments.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- NULL # fix the CRAN note
                   ^~~~~~
```
[R/plot_bwa_assignment.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_bwa_assignment.R:21:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_bwa_assignment.R:21:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/plot_bwa_assignment.R:33:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L33) *style:* **Variable or function name should be snake_case.**
```r
  vals$ABUNDANCE <- vals$ABUNDANCE
       ^~~~~~~~~
```
[R/plot_bwa_assignment.R:36:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L36) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_bwa_assignment.R:41:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                          ^
```
[R/plot_bwa_assignment.R:41:91:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_bwa_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                                                                                ^
```
[R/plot_gottcha_assignment.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_gottcha_assignment.R:21:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_gottcha_assignment.R:21:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/plot_gottcha_assignment.R:33:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L33) *style:* **Variable or function name should be snake_case.**
```r
  vals$ABUNDANCE <- vals$ABUNDANCE * 100
       ^~~~~~~~~
```
[R/plot_gottcha_assignment.R:36:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L36) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_gottcha_assignment.R:41:27:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                          ^
```
[R/plot_gottcha_assignment.R:41:91:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_gottcha_assignment.R#L41) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
     p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                                                                                ^
```
[R/plot_kraken_assignment.R:21:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_kraken_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_kraken_assignment.R:21:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_kraken_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_kraken_assignment.R:21:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_kraken_assignment.R#L21) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ABUNDANCE <- tool <- NULL # fix the CRAN note
                   ^~~~~~~~~
```
[R/plot_kraken_assignment.R:33:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_kraken_assignment.R#L33) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_kraken_assignment.R:38:24:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_kraken_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                       ^
```
[R/plot_kraken_assignment.R:38:88:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_kraken_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ABUNDANCE) ) +
                                                                                ^
```
[R/plot_merged_assignment.R:29:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L29) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- SUM <- value <- variable <- NULL # fix the CRAN note
  ^~~~
```
[R/plot_merged_assignment.R:29:11:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L29) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- SUM <- value <- variable <- NULL # fix the CRAN note
          ^~~~~
```
[R/plot_merged_assignment.R:29:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L29) *style:* **Variable or function name should be snake_case.**
```r
  TAXA <- LEVEL <- SUM <- value <- variable <- NULL # fix the CRAN note
                   ^~~
```
[R/plot_merged_assignment.R:89:6:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L89) *style:* **Variable or function name should be snake_case.**
```r
  df$TAXA <- factor(x = df$TAXA, levels = unique(df$TAXA), ordered = T)
     ^~~~
```
[R/plot_merged_assignment.R:98:71:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L98) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  column_index <- c(1, project_names_order + 1, as.numeric(dim(df)[2]) )
                                                                      ^
```
[R/plot_merged_assignment.R:100:39:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L100) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  df <- dplyr::select(df, column_index )
                                      ^
```
[R/plot_merged_assignment.R:109:24:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L109) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = melted_df, ggplot2::aes(y = TAXA, x = variable, fill = value) ) +
                       ^
```
[R/plot_merged_assignment.R:109:93:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_merged_assignment.R#L109) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = melted_df, ggplot2::aes(y = TAXA, x = variable, fill = value) ) +
                                                                                ^
```
[R/plot_metaphlan_assignment.R:20:3:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_metaphlan_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- tool <- NULL # fix the CRAN note
  ^~~~~
```
[R/plot_metaphlan_assignment.R:20:12:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_metaphlan_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- tool <- NULL # fix the CRAN note
           ^~~~
```
[R/plot_metaphlan_assignment.R:20:20:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_metaphlan_assignment.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  LEVEL <- TAXA <- ROLLUP <- tool <- NULL # fix the CRAN note
                   ^~~~~~
```
[R/plot_metaphlan_assignment.R:32:8:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_metaphlan_assignment.R#L32) *style:* **Variable or function name should be snake_case.**
```r
  vals$TAXA <- factor(x = vals$TAXA, levels = vals$TAXA, ordered = T)
       ^~~~
```
[R/plot_metaphlan_assignment.R:37:24:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_metaphlan_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ROLLUP) ) +
                       ^
```
[R/plot_metaphlan_assignment.R:37:85:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/R/plot_metaphlan_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  p <- ggplot2::ggplot( data = vals, ggplot2::aes(y = TAXA, x = tool, fill = ROLLUP) ) +
                                                                                ^
```
[tests/testthat/test_load_bwa_assignment.R:7:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L7) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(558) )
            ^
```
[tests/testthat/test_load_bwa_assignment.R:7:38:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L7) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(558) )
                                     ^
```
[tests/testthat/test_load_bwa_assignment.R:10:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L10) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
            ^
```
[tests/testthat/test_load_bwa_assignment.R:10:36:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L10) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
                                   ^
```
[tests/testthat/test_load_bwa_assignment.R:13:35:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L13) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                  ^
```
[tests/testthat/test_load_bwa_assignment.R:13:76:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L13) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                           ^
```
[tests/testthat/test_load_bwa_assignment.R:13:78:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L13) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                             ^
```
[tests/testthat/test_load_bwa_assignment.R:18:31:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L18) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
family_table <- dplyr::filter( dat, LEVEL == "species")
                              ^
```
[tests/testthat/test_load_bwa_assignment.R:21:26:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
ent_row <- dplyr::filter( family_table, TAXA == "Moraxella catarrhalis")
                         ^
```
[tests/testthat/test_load_bwa_assignment.R:36:40:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                       ^
```
[tests/testthat/test_load_bwa_assignment.R:36:81:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_bwa_assignment.R:36:83:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_bwa_assignment.R:37:40:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_bwa_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(dim(empty_df)[1], equals(0) )
                                       ^
```
[tests/testthat/test_load_gottcha_assignment.R:8:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(65) )
            ^
```
[tests/testthat/test_load_gottcha_assignment.R:8:37:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(65) )
                                    ^
```
[tests/testthat/test_load_gottcha_assignment.R:11:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
            ^
```
[tests/testthat/test_load_gottcha_assignment.R:11:36:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
                                   ^
```
[tests/testthat/test_load_gottcha_assignment.R:14:35:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                  ^
```
[tests/testthat/test_load_gottcha_assignment.R:14:76:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                           ^
```
[tests/testthat/test_load_gottcha_assignment.R:14:78:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                             ^
```
[tests/testthat/test_load_gottcha_assignment.R:17:1:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L17) *style:* **Lines should not be more than 100 characters.**
```r
# LEVEL	TAXA	ROLLUP	ASSIGNED	LINEAR_LENGTH	TOTAL_BP_MAPPED	HIT_COUNT	HIT_COUNT_PLASMID	READ_COUNT	LINEAR_DOC	NORM_COV
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_load_gottcha_assignment.R:21:32:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L21) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
species_table <- dplyr::filter( dat, LEVEL == "species")
                               ^
```
[tests/testthat/test_load_gottcha_assignment.R:24:26:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L24) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
ent_row <- dplyr::filter( species_table, TAXA == "Haemophilus influenzae")
                         ^
```
[tests/testthat/test_load_gottcha_assignment.R:38:40:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                       ^
```
[tests/testthat/test_load_gottcha_assignment.R:38:81:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_gottcha_assignment.R:38:83:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L38) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```
[tests/testthat/test_load_gottcha_assignment.R:39:40:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha_assignment.R#L39) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(dim(empty_df)[1], equals(0) )
                                       ^
```
[tests/testthat/test_load_gottcha2_assignment.R:8:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(201) )
            ^
```
[tests/testthat/test_load_gottcha2_assignment.R:8:38:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L8) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[1], equals(201) )
                                     ^
```
[tests/testthat/test_load_gottcha2_assignment.R:11:13:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
            ^
```
[tests/testthat/test_load_gottcha2_assignment.R:11:36:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L11) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that( dim(dat)[2], equals(4) )
                                   ^
```
[tests/testthat/test_load_gottcha2_assignment.R:14:35:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                  ^
```
[tests/testthat/test_load_gottcha2_assignment.R:14:76:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                           ^
```
[tests/testthat/test_load_gottcha2_assignment.R:14:78:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L14) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(dat), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                             ^
```
[tests/testthat/test_load_gottcha2_assignment.R:19:31:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L19) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
family_table <- dplyr::filter( dat, LEVEL == "family")
                              ^
```
[tests/testthat/test_load_gottcha2_assignment.R:22:26:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L22) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
ent_row <- dplyr::filter( family_table, TAXA == "Micrococcaceae")
                         ^
```
[tests/testthat/test_load_gottcha2_assignment.R:37:40:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                       ^
```
[tests/testthat/test_load_gottcha2_assignment.R:37:81:](https://github.com/seninp-bioinfo/MetaComp/blob/375b7505fe2970e5a05fd7335ef54840c25d585a/tests/testthat/test_load_gottcha2_assignment.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
expect_that(colnames(empty_df), equals( c("LEVEL", "TAXA", "COUNT", "ABUNDANCE") ) )
                                                                                ^
```


Aqui temos um pequeno problema. Quando implementarmos uma nova operação, vamos ter que alterar também esta parte do código, inserindo (e repetindo) a nova operação e o seu código. Como eles já estão no enum, tente adaptar esta parte para mostrar estas informações usando o próprio enum, assim seu código será escalável.

**Pergunte-se:** quero inserir uma nova operação, o que preciso fazer?
**E a resposta deve ser:** apenas implementar a nova operação, pois o código já está preparado para recebê-la.