[R/dEploidPlotly.R:28:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L28) *style:* **Variable or function name should be snake_case.**
```r
plotAltVsRefPlotly <- function(ref, alt, title = "Alt vs Ref",
^~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:29:32:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L29) *style:* **Variable or function name should be snake_case.**
```r
                               potentialOutliers = c()){
                               ^~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:31:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L31) *style:* **Variable or function name should be snake_case.**
```r
    legendName <- "Ref/(Ref+Alt) Ratio"
    ^~~~~~~~~~
```
[R/dEploidPlotly.R:32:14:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L32) *style:* **Use <-, not =, for assignment.**
```r
    refvsalt = data.frame(ref, alt)
             ^
```
[R/dEploidPlotly.R:33:14:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L33) *style:* **Variable or function name should be snake_case.**
```r
    refvsalt$ref.out = ifelse(rownames(refvsalt) %in%
             ^~~~~~~
```
[R/dEploidPlotly.R:33:22:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L33) *style:* **Use <-, not =, for assignment.**
```r
    refvsalt$ref.out = ifelse(rownames(refvsalt) %in%
                     ^
```
[R/dEploidPlotly.R:35:14:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L35) *style:* **Variable or function name should be snake_case.**
```r
    refvsalt$alt.out = ifelse(rownames(refvsalt) %in%
             ^~~~~~~
```
[R/dEploidPlotly.R:35:22:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L35) *style:* **Use <-, not =, for assignment.**
```r
    refvsalt$alt.out = ifelse(rownames(refvsalt) %in%
                     ^
```
[R/dEploidPlotly.R:37:22:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L37) *style:* **Use <-, not =, for assignment.**
```r
    refvsalt$outlier = ifelse(is.na(refvsalt$ref.out),
                     ^
```
[R/dEploidPlotly.R:107:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L107) *style:* **Variable or function name should be snake_case.**
```r
plotHistWSAFPlotly <- function(obsWSAF, exclusive = TRUE,
^~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:107:32:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L107) *style:* **Variable or function name should be snake_case.**
```r
plotHistWSAFPlotly <- function(obsWSAF, exclusive = TRUE,
                               ^~~~~~~
```
[R/dEploidPlotly.R:109:3:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L109) *style:* **Variable or function name should be snake_case.**
```r
  tmpWSAFIndex <- 1:length(obsWSAF)
  ^~~~~~~~~~~~
```
[R/dEploidPlotly.R:111:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
    ^~~~~~~~~~~~
```
[R/dEploidPlotly.R:111:27:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L111) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                          ^
```
[R/dEploidPlotly.R:111:29:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L111) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                            ^
```
[R/dEploidPlotly.R:175:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L175) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFVsPLAFPlotly <- function(plaf, obsWSAF, ref, alt,
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:175:40:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L175) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFVsPLAFPlotly <- function(plaf, obsWSAF, ref, alt,
                                       ^~~~~~~
```
[R/dEploidPlotly.R:177:34:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L177) *style:* **Variable or function name should be snake_case.**
```r
                                 potentialOutliers = c()){
                                 ^~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:178:16:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L178) *style:* **Use <-, not =, for assignment.**
```r
    wsafvsplaf = data.frame(plaf, obsWSAF)
               ^
```
[R/dEploidPlotly.R:179:16:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L179) *style:* **Variable or function name should be snake_case.**
```r
    wsafvsplaf$plaf.out = ifelse(rownames(wsafvsplaf) %in%
               ^~~~~~~~
```
[R/dEploidPlotly.R:179:25:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L179) *style:* **Use <-, not =, for assignment.**
```r
    wsafvsplaf$plaf.out = ifelse(rownames(wsafvsplaf) %in%
                        ^
```
[R/dEploidPlotly.R:181:16:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L181) *style:* **Variable or function name should be snake_case.**
```r
    wsafvsplaf$obsWSAF.out = ifelse(rownames(wsafvsplaf) %in%
               ^~~~~~~~~~~
```
[R/dEploidPlotly.R:181:28:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L181) *style:* **Use <-, not =, for assignment.**
```r
    wsafvsplaf$obsWSAF.out = ifelse(rownames(wsafvsplaf) %in%
                           ^
```
[R/dEploidPlotly.R:183:24:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L183) *style:* **Use <-, not =, for assignment.**
```r
    wsafvsplaf$outlier = ifelse(is.na(wsafvsplaf$plaf.out),
                       ^
```
[R/dEploidPlotly.R:236:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:236:34:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
                                 ^~~~~~~
```
[R/dEploidPlotly.R:236:43:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
                                          ^~~~~~~
```
[R/DEploidR.R:23:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:23:36:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
                                   ^~~~~~~~~~~
```
[R/DEploidR.R:23:49:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
                                                ^~~~~~~~~~~
```
[R/DEploidR.R:54:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:54:36:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
                                   ^~~~~~~~~~~
```
[R/DEploidR.R:54:49:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
                                                ^~~~~~~~~~~~
```
[R/DEploidR.R:62:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L62) *style:* **Variable or function name should be snake_case.**
```r
    numberOfHeaderLines <- 0
    ^~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:66:13:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L66) *style:* **Variable or function name should be snake_case.**
```r
            numberOfHeaderLines <- numberOfHeaderLines + 1
            ^~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:78:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L78) *style:* **Variable or function name should be snake_case.**
```r
    sampleName <- names(vcf)[10]
    ^~~~~~~~~~
```
[R/DEploidR.R:83:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L83) *style:* **Variable or function name should be snake_case.**
```r
    tmpCovStr <- unlist(lapply(field, `[[`, ADFieldIndex))
    ^~~~~~~~~
```
[R/DEploidR.R:84:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L84) *style:* **Variable or function name should be snake_case.**
```r
    tmpCov <- strsplit(as.character(tmpCovStr), ",")
    ^~~~~~
```
[R/DEploidR.R:86:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L86) *style:* **Variable or function name should be snake_case.**
```r
    refCount <- as.numeric(unlist(lapply(tmpCov, `[[`, 1)))
    ^~~~~~~~
```
[R/DEploidR.R:87:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L87) *style:* **Variable or function name should be snake_case.**
```r
    altCount <- as.numeric(unlist(lapply(tmpCov, `[[`, 2)))
    ^~~~~~~~
```
[R/DEploidR.R:114:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L114) *style:* **Variable or function name should be snake_case.**
```r
extractPLAF <- function(plafFileName){
^~~~~~~~~~~
```
[R/DEploidR.R:114:25:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L114) *style:* **Variable or function name should be snake_case.**
```r
extractPLAF <- function(plafFileName){
                        ^~~~~~~~~~~~
```
[R/DEploidR.R:151:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L151) *style:* **Variable or function name should be snake_case.**
```r
plotProportions <- function(proportions, title = "Components",
^~~~~~~~~~~~~~~
```
[R/DEploidR.R:152:24:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                       ^~~~~~~
```
[R/DEploidR.R:152:37:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                                    ^~~~~~~~
```
[R/DEploidR.R:152:51:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                  ^~~~~~~~
```
[R/DEploidR.R:153:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L153) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColorBin <- 16
    ^~~~~~~~~~~~~~~
```
[R/DEploidR.R:200:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L200) *style:* **Variable or function name should be snake_case.**
```r
plotAltVsRef <- function(ref, alt, title = "Alt vs Ref",
^~~~~~~~~~~~
```
[R/DEploidR.R:201:21:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L201) *style:* **Variable or function name should be snake_case.**
```r
                    exclude.ref = c(), exclude.alt = c(),
                    ^~~~~~~~~~~
```
[R/DEploidR.R:201:40:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L201) *style:* **Variable or function name should be snake_case.**
```r
                    exclude.ref = c(), exclude.alt = c(),
                                       ^~~~~~~~~~~
```
[R/DEploidR.R:202:21:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                    ^~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:202:46:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                                             ^~~~~~~
```
[R/DEploidR.R:202:59:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                                                          ^~~~~~~~
```
[R/DEploidR.R:203:21:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L203) *style:* **Variable or function name should be snake_case.**
```r
                    cex.axis = 1){
                    ^~~~~~~~
```
[R/DEploidR.R:207:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L207) *style:* **Variable or function name should be snake_case.**
```r
    tmpRange <- 1.1 * mean(max(alt), max(ref))
    ^~~~~~~~
```
[R/DEploidR.R:266:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L266) *style:* **Variable or function name should be snake_case.**
```r
histWSAF <- function(obsWSAF, exclusive = TRUE,
^~~~~~~~
```
[R/DEploidR.R:266:22:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L266) *style:* **Variable or function name should be snake_case.**
```r
histWSAF <- function(obsWSAF, exclusive = TRUE,
                     ^~~~~~~
```
[R/DEploidR.R:268:17:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                ^~~~~~~
```
[R/DEploidR.R:268:30:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                             ^~~~~~~~
```
[R/DEploidR.R:268:44:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                                           ^~~~~~~~
```
[R/DEploidR.R:269:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L269) *style:* **Variable or function name should be snake_case.**
```r
    tmpWSAFIndex <- 1:length(obsWSAF)
    ^~~~~~~~~~~~
```
[R/DEploidR.R:271:9:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L271) *style:* **Variable or function name should be snake_case.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
        ^~~~~~~~~~~~
```
[R/DEploidR.R:271:31:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L271) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                              ^
```
[R/DEploidR.R:271:33:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L271) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                                ^
```
[R/DEploidR.R:323:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
^~~~~~~~~~~~~~
```
[R/DEploidR.R:323:34:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
                                 ^~~~~~~
```
[R/DEploidR.R:323:43:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
                                          ^~~~~~~
```
[R/DEploidR.R:324:23:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L324) *style:* **Variable or function name should be snake_case.**
```r
                      potentialOutliers = c(), title = "WSAF vs PLAF",
                      ^~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:325:23:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                      ^~~~~~~
```
[R/DEploidR.R:325:36:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                   ^~~~~~~~
```
[R/DEploidR.R:325:50:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                 ^~~~~~~~
```
[R/DEploidR.R:368:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L368) *style:* **Lines should not be more than 80 characters.**
```r
#' prop = PG0390CoverageV.deconv$Proportions[dim(PG0390CoverageV.deconv$Proportions)[1],]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:373:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
^~~~~~~~~~~~~~
```
[R/DEploidR.R:373:28:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
                           ^~~~~~~
```
[R/DEploidR.R:373:37:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
                                    ^~~~~~~
```
[R/DEploidR.R:375:23:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                      ^~~~~~~
```
[R/DEploidR.R:375:36:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                   ^~~~~~~~
```
[R/DEploidR.R:375:50:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                 ^~~~~~~~
```
[R/DEploidR.R:411:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L411) *style:* **Variable or function name should be snake_case.**
```r
computeObsWSAF <- function(alt, ref){
^~~~~~~~~~~~~~
```
[R/DEploidR.R:432:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
^~~~~~~~~~~~~~~~
```
[R/DEploidR.R:432:30:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
                             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:432:66:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
                                                                 ^~~~~~~~~~~~
```
[R/DEploidR.R:433:25:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L433) *style:* **Variable or function name should be snake_case.**
```r
                        numberOfInbreeding = 0){
                        ^~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:434:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L434) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColorBin <- 16
    ^~~~~~~~~~~~~~~
```
[R/DEploidR.R:435:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L435) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColors <- rainbow(rainbowColorBin)
    ^~~~~~~~~~~~~
```
[R/DEploidR.R:437:9:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L437) *style:* **Variable or function name should be snake_case.**
```r
        panelSize <- dim(posteriorProbabilities)[2] - numberOfInbreeding
        ^~~~~~~~~
```
[R/DEploidR.R:438:9:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L438) *style:* **Variable or function name should be snake_case.**
```r
        rainbowColors <- c(rep("#46a8e1", panelSize),
        ^~~~~~~~~~~~~
```
[R/DEploidR.R:446:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L446) *style:* **Variable or function name should be snake_case.**
```r
    newXaxt <- round(seq(1, dim(posteriorProbabilities)[1], length.out = 6))
    ^~~~~~~
```
[R/DEploidR.R:449:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/R/DEploidR.R#L449) *style:* **Variable or function name should be snake_case.**
```r
    newYaxt <- seq(0, 1, length.out = 3)
    ^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:3:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L3) *style:* **Variable or function name should be snake_case.**
```r
vcfFileName <- system.file("extdata", "PG0390-C.test.vcf.gz",
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:5:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L5) *style:* **Variable or function name should be snake_case.**
```r
plafFileName <- system.file("extdata", "labStrains.test.PLAF.txt",
^~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:7:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L7) *style:* **Variable or function name should be snake_case.**
```r
panelFileName <- system.file("extdata", "labStrains.test.panel.txt",
^~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:9:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L9) *style:* **Variable or function name should be snake_case.**
```r
refFileName <- system.file("extdata", "PG0390-C.test.ref", package = "DEploid")
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:10:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L10) *style:* **Variable or function name should be snake_case.**
```r
altFileName <- system.file("extdata", "PG0390-C.test.alt", package = "DEploid")
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:12:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L12) *style:* **Variable or function name should be snake_case.**
```r
PG0390CoverageVcf <- extractCoverageFromVcf(vcfFileName)
^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:15:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L15) *style:* **Variable or function name should be snake_case.**
```r
PG0390Deconv <- dEploid(paste("-vcf", vcfFileName, "-plaf", plafFileName,
^~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:18:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L18) *style:* **Variable or function name should be snake_case.**
```r
expWSAF <- t(PG0390Deconv$Haps) %*% prop
^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:21:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L21) *style:* **Variable or function name should be snake_case.**
```r
    PG0390CoverageTxt <- extractCoverageFromTxt(refFileName, altFileName)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:44:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L44) *style:* **Variable or function name should be snake_case.**
```r
    obsWSAF <- computeObsWSAF(PG0390CoverageVcf$altCount,
    ^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:46:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L46) *style:* **Variable or function name should be snake_case.**
```r
    potentialOutliers = c(5, 12, 25, 30, 35, 50)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:46:23:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L46) *style:* **Use <-, not =, for assignment.**
```r
    potentialOutliers = c(5, 12, 25, 30, 35, 50)
                      ^
```
[tests/testthat/test-DEploid_tools.R:127:5:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L127) *style:* **Variable or function name should be snake_case.**
```r
    potentialOutliers = c(1, 10, 20, 30, 40)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:127:23:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L127) *style:* **Use <-, not =, for assignment.**
```r
    potentialOutliers = c(1, 10, 20, 30, 40)
                      ^
```
[tests/testthat/test-DEploid_tools.R:133:55:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-DEploid_tools.R#L133) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                 potentialOutliers = potentialOutliers )
                                                      ^
```
[tests/testthat/test-dEploid.R:3:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-dEploid.R#L3) *style:* **Variable or function name should be snake_case.**
```r
vcfFileName <- system.file("extdata", "PG0390-C.test.vcf.gz",
^~~~~~~~~~~
```
[tests/testthat/test-dEploid.R:5:1:](https://github.com/liuyingh/DEploid-r/blob/44aba49c0f0fcd8b25396e36c4ded23631de13b7/tests/testthat/test-dEploid.R#L5) *style:* **Variable or function name should be snake_case.**
```r
plafFileName <- system.file("extdata", "labStrains.test.PLAF.txt",
^~~~~~~~~~~~
```


这里的修改比较重要。
之前一直只用 chrome 调试，大部分 svg 的属性都能直接用 css 来控制，原来并不是这样的，规范中有很多属性并不能用 css 直接控制。而必须要用 js 来做。

所以这里单独将端点作成一个组件，它的大小控制以及动画由 js(SMIL) 来控制。但是对外的接口以及 DOM 结构不变。


nit for those 2 tests: testing one value is not enough


@miguelmota DMCA should not apply even in this situation as the line in the blacklist is nothing more than blocking a whole website.  You can sinkhole it in your HOSTS file just as easily.
I actually submitted the domain to MysteryFCM at hosts-file.net (not sure if he is willing to add it because while he is in the UK hpHosts is owned by Malwarebytes which I believe is US-based).


F->free ;)


Ок) Сделаем) Спасибо


Thanks!

I was trying to get it to work yesterday but i'm unable to. Did you have problems recently?


Yeah, you're right- this could possibly lead to issues. It's very minor so I'll only fix on the 1.12 branch.


Yes. Had to remove them as well.


> @Chibin @pivotal-mike heads up -- added this in as a part of #2894

Yep 👍


> I can say for sure that this tool which you've linked in one of the threads doing that

We do that too. Please check `importdb()`.

> Feel free to open issue on my fork of Buku due to this request

Raise the PR when it's ready. No hurry. I don't think it's a defect. Just an improvement.


I would suggest a new feature in Adblockers which instead of blocking ads, it block sites that use a specific ad server. In this case, any site that send requests to functionalclam will be blocked and replaced with a blank page and text to explain that the page was blocked.

This way, we do not need to worry about DMCA because there's no DRM if the whole page is blocked. We would then punish their customer instead of the ad services.


I fetched the branch to my machine and merged there.  (This turns out to be problematic if I want to tinker with things - but that's another topic :)  Anyhow, my own git chops leave much to be desired, and I do everything locally first for fear of messing things up on github.  I've been known to have to pluck old copies of .git out of backups and start over - wouldn't be able to do that on github I don't think.


Yep (albeit accidentally) - looks like [it just uses the `button_install` method paired with some sort of immediate runner](https://github.com/odoo/odoo/blob/8235f03f565ecbb097aca94638703f5dd6ca4eea/odoo/addons/base/module/module.py#L506)


Tohle vyloucit z repozitare.


148704793-Improvements-to-Ventilation-Control-for-DOAS-AirLoop-#6205 (lgu1234) - Win64-Windows-7-VisualStudio-14: OK (2581 of 2581 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


Ok, got it!


I'll add a test. Cuz why not?!


SDK: I always just use the latest, for debugging and WPR/WPA tools. I'm on Windows 7 too, but yes, up to the consensus.

Minimal: Well to me it's a small project and you can't combine minimal rebuild with parallel which I find faster with all my cores.


Missed a username?


Toto take vyloucit a veskere data databaze. Ta by mela byt od aplikace uplne oddelena.


I think we should move it to the org account - http://help.appveyor.com/discussions/questions/1444-transfer-project-ownership


Виталий, я по гуглил, и нашел вот это
require 'mathn'
qu = Math.sqrt(d)
Если ее написать оно вроди бы исправляет баг с дискрминантом меньше нуля.
но я не совсем понял оно как работает?


Probably a better workflow would be to use GitHub as a remote that you can merge and then fetch from ala:

    git remote add github https://github.com/pure-data/pure-data.git

Then you can do the following:

    # fetch current master from GitHub, works like a light pull
    git fetch remote github master

    # merge those changes into the current local branch
    git merge github/master

This is how I work on a fork and still pull changes from the upstream source. Doing a fetch instead of a pull is safer as it does not apply the changes until you actually do the merge.


Uprav si vychozi sablonu v Netbeans, at ti tu ty nadbytecne komentare "nestrasi".


I also made the @forcedotcom/ide team admins.


@7Pass This could be doable if the adblockers were to add a new API to block the entire webpage if it has a banned match in it.  However, it cannot effectively block the page as the browser still needs to load the page in order for the adblock filter to take effect, unlike how the existing lists prevent requests from even being issued by the browser.


Vsechny vlastnosti by mely byt final.


This line can be removed, it's unreachable.


And as long as the changes are committed and pushed somewhere, the worst that can happen is having to do a fresh clone if everything explodes. AT least, that's been my experience: if it's too far gone, just nuke it and re-clone. :)


почему не через секьюрити контекст?


Uplne nechapu vyznam tedle tridy. Kdyz potrebuju beanu, tak si ji necham injectnout nebo si ji vytahnu z kontextu.


с маленькой буквы


I was under the impression that until you get a chance to work with fluent-web, and until we put it on a release train model, it's my experimental workshop.

Am I incorrect?


Thanks, will give it a go this weekend.


инкапсулируй


с маленькой


![](https://github.trello.services/images/mini-trello-icon.png) [9.8 Restrict at /cron to Authorized Users](https://trello.com/c/66xy3OMM/77-98-restrict-at-cron-to-authorized-users)


@hanaykim Should mention in the description that this requires "restricted access" to be enabled.


test


Remove all your .class files everywhere


![](https://github.trello.services/images/mini-trello-icon.png) [9.8 Restrict at /cron to Authorized Users](https://trello.com/c/MXsQ27cH/144-98-restrict-at-cron-to-authorized-users)


damn


We should fix our EINA_VALUE_TYPE_PROMISE2 flush to do this cancel (and eina_value_promise_steal to get the internal memory and manually set it to NULL, as pset/vset must also cancel it!)

Then no special case is needed


оч странное место, проверь


LGTM


Zde by sla pouzit genericka komponenta a v pouzit CompoundPropertyModel.


It's not really recursion (no stack accumulation), I could use thread but this is the way used in every modules, matter of taste. Also, this way if there are errors, the loop will still continue, thanks to the SetTimeout at the beginning.


Lze pouzit inject primo do wicketu nebo vyuzit wicket Application tridu.


Bad name, misses value in it


Fix #24


I have deployed this commit :shipit:.


Added webapp template


This is wrong. Collection.set(name, value)


We shouldn't need this, new_v should copy it there...

Once we remove pointer and use the struct this will be even simpler


But until you change that, keep it here :-/


@hanaykim We don't want people to turn this off... the purpose of the setting was to determine if the access restrictions should expanded or collapsed by default. We want to default to it being expanded.


Hi @daffl , Thanks for updating to support elasticsearch 5.5! I'm using 5.5.1 locally, and after I
> git clone git@github.com:feathersjs/feathers-elasticsearch.git
cd feathers-elasticsearch
npm install
npm test

it still fails. The errors are:
>  1) Elasticsearch Service "before all" hook:
     Error: Bad Request
      at respond (node_modules/elasticsearch/src/lib/transport.js:307:15)
      at checkRespForFailure (node_modules/elasticsearch/src/lib/transport.js:266:7)
      at HttpConnector.<anonymous> (node_modules/elasticsearch/src/lib/connectors/http.js:159:7)
      at IncomingMessage.bound (node_modules/elasticsearch/node_modules/lodash/dist/lodash.js:729:21)
      at endReadableNT (_stream_readable.js:975:12)
      at _combinedTickCallback (internal/process/next_tick.js:80:11)
      at process._tickCallback (internal/process/next_tick.js:104:9)

>  2) Elasticsearch Service "after all" hook:
     Error: [index_not_found_exception] no such index, with { resource.type="index_or_alias" & resource.id="test" & index_uuid="_na_" & index="test" }
      at respond (node_modules/elasticsearch/src/lib/transport.js:307:15)
      at checkRespForFailure (node_modules/elasticsearch/src/lib/transport.js:266:7)
      at HttpConnector.<anonymous> (node_modules/elasticsearch/src/lib/connectors/http.js:159:7)
      at IncomingMessage.bound (node_modules/elasticsearch/node_modules/lodash/dist/lodash.js:729:21)
      at endReadableNT (_stream_readable.js:975:12)
      at _combinedTickCallback (internal/process/next_tick.js:80:11)
      at process._tickCallback (internal/process/next_tick.js:104:9)
Is this the problem of my machine or something else still does not work?


зачем тут else?


👍  Thanks for making @forcedotcom/ide team admins. That should be helpful in the interim.


test


Rethinking... this extra logic doesn't help much, just add code. We can remove that and allow to resolve with all kinds of value


Minor :)
Shouldn't it be picked dynamically?
`package.json` contains
```
bootstrap-sass": "^3.3.7"
```
If you don't expect any issue, then fine.


148704793-Improvements-to-Ventilation-Control-for-DOAS-AirLoop-#6205 (lgu1234) - x86_64-Linux-Ubuntu-14.04-gcc-4.8: OK (2606 of 2615 tests passed, 595 test warnings)

Messages:

 * 604 tests had: AUD diffs.
 * 98 tests had: EIO diffs.
 * 9 tests had: ESO big diffs.
 * 9 tests had: Table big diffs.
 * 6 tests had: ERR diffs.
 * 1 test had: MTR big diffs.

Failures:

regression Test Summary
 * Passed: 611
 * Failed: 9

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.66%25-yellow.png)


инкупсулируй


We're getting there


Will this effect elm-community/lazy-list, since that depends on this package?


@HiddenRambler Can you review this to make sure it's correct?


It is a specific OPD commit


Это вообще как понимать?


И куда лестница делась собственно?


148704793-Improvements-to-Ventilation-Control-for-DOAS-AirLoop-#6205 (lgu1234) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


複数のブラウザを起ち上げてその中でチャットができるようになった


oops, misspell, should be "canola"


why is this here


The previous approach did not work because `billingHelper` would not get initiated until only after the user has clicked on a donation amount (so the first time the user selects an amount, nothing happens).

Now `billingHelper` is initiated in `onCreate` so it will be available by the time the user makes a donation.


this broke the odometry test


I believe the commit is valid-some changes have been made. However the message is meant for the change made to the Javascript version of this challenge!


Yes there is. So the new test has 7 accesses and won't have the bitcast stat message


Unbelievable. If users can access copyrighted works simply by blocking a connection, their customers should really think why they even hired them. Sad that you did not counter DMCA immediately. EFF would surely be interested to help. Usually after a counter DMCA you won't hear anything from them anymore, I don't think they would escalate this any further to a lawsuit. Lets just hope everyone will soon block their site by default.


I intended to be able to call a same function whether from GEP or from a bitcast...


[tests/testthat/test_cleanup.R:146:21:](https://github.com/steinbaugh/basejump/blob/81f611e894615b9ef1e8af91e7ddda40e5a55a74/tests/testthat/test_cleanup.R#L146) *style:* **Integers should not be implicit. Use the form 1L for integers or 1.0 for doubles.**
```r
        removeNA(c(1, 2, NA)) %>%
                   ~^
```
[tests/testthat/test_cleanup.R:146:24:](https://github.com/steinbaugh/basejump/blob/81f611e894615b9ef1e8af91e7ddda40e5a55a74/tests/testthat/test_cleanup.R#L146) *style:* **Integers should not be implicit. Use the form 1L for integers or 1.0 for doubles.**
```r
        removeNA(c(1, 2, NA)) %>%
                      ~^
```


why did you rename it? GetPlayfield was fine


class names are ALWAYS capitalized


I have deployed this commit :shipit:.


[R/dEploidPlotly.R:28:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L28) *style:* **Variable or function name should be snake_case.**
```r
plotAltVsRefPlotly <- function(ref, alt, title = "Alt vs Ref",
^~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:29:32:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L29) *style:* **Variable or function name should be snake_case.**
```r
                               potentialOutliers = c()){
                               ^~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:31:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L31) *style:* **Variable or function name should be snake_case.**
```r
    legendName <- "Ref/(Ref+Alt) Ratio"
    ^~~~~~~~~~
```
[R/dEploidPlotly.R:33:14:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L33) *style:* **Variable or function name should be snake_case.**
```r
    refvsalt$ref.out <- ifelse(rownames(refvsalt) %in%
             ^~~~~~~
```
[R/dEploidPlotly.R:35:14:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L35) *style:* **Variable or function name should be snake_case.**
```r
    refvsalt$alt.out <- ifelse(rownames(refvsalt) %in%
             ^~~~~~~
```
[R/dEploidPlotly.R:107:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L107) *style:* **Variable or function name should be snake_case.**
```r
plotHistWSAFPlotly <- function(obsWSAF, exclusive = TRUE,
^~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:107:32:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L107) *style:* **Variable or function name should be snake_case.**
```r
plotHistWSAFPlotly <- function(obsWSAF, exclusive = TRUE,
                               ^~~~~~~
```
[R/dEploidPlotly.R:109:3:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L109) *style:* **Variable or function name should be snake_case.**
```r
  tmpWSAFIndex <- 1:length(obsWSAF)
  ^~~~~~~~~~~~
```
[R/dEploidPlotly.R:111:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
    ^~~~~~~~~~~~
```
[R/dEploidPlotly.R:111:27:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L111) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
                          ^
```
[R/dEploidPlotly.R:111:28:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L111) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
                           ^
```
[R/dEploidPlotly.R:175:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L175) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFVsPLAFPlotly <- function(plaf, obsWSAF, ref, alt,
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:175:40:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L175) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFVsPLAFPlotly <- function(plaf, obsWSAF, ref, alt,
                                       ^~~~~~~
```
[R/dEploidPlotly.R:177:34:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L177) *style:* **Variable or function name should be snake_case.**
```r
                                 potentialOutliers = c()){
                                 ^~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:179:16:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L179) *style:* **Variable or function name should be snake_case.**
```r
    wsafvsplaf$plaf.out <- ifelse(rownames(wsafvsplaf) %in%
               ^~~~~~~~
```
[R/dEploidPlotly.R:181:16:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L181) *style:* **Variable or function name should be snake_case.**
```r
    wsafvsplaf$obsWSAF.out <- ifelse(rownames(wsafvsplaf) %in%
               ^~~~~~~~~~~
```
[R/dEploidPlotly.R:236:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:236:34:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
                                 ^~~~~~~
```
[R/dEploidPlotly.R:236:43:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
                                          ^~~~~~~
```
[R/DEploidR.R:23:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:23:36:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
                                   ^~~~~~~~~~~
```
[R/DEploidR.R:23:49:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
                                                ^~~~~~~~~~~
```
[R/DEploidR.R:54:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:54:36:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
                                   ^~~~~~~~~~~
```
[R/DEploidR.R:54:49:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
                                                ^~~~~~~~~~~~
```
[R/DEploidR.R:62:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L62) *style:* **Variable or function name should be snake_case.**
```r
    numberOfHeaderLines <- 0
    ^~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:66:13:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L66) *style:* **Variable or function name should be snake_case.**
```r
            numberOfHeaderLines <- numberOfHeaderLines + 1
            ^~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:78:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L78) *style:* **Variable or function name should be snake_case.**
```r
    sampleName <- names(vcf)[10]
    ^~~~~~~~~~
```
[R/DEploidR.R:83:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L83) *style:* **Variable or function name should be snake_case.**
```r
    tmpCovStr <- unlist(lapply(field, `[[`, ADFieldIndex))
    ^~~~~~~~~
```
[R/DEploidR.R:84:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L84) *style:* **Variable or function name should be snake_case.**
```r
    tmpCov <- strsplit(as.character(tmpCovStr), ",")
    ^~~~~~
```
[R/DEploidR.R:86:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L86) *style:* **Variable or function name should be snake_case.**
```r
    refCount <- as.numeric(unlist(lapply(tmpCov, `[[`, 1)))
    ^~~~~~~~
```
[R/DEploidR.R:87:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L87) *style:* **Variable or function name should be snake_case.**
```r
    altCount <- as.numeric(unlist(lapply(tmpCov, `[[`, 2)))
    ^~~~~~~~
```
[R/DEploidR.R:114:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L114) *style:* **Variable or function name should be snake_case.**
```r
extractPLAF <- function(plafFileName){
^~~~~~~~~~~
```
[R/DEploidR.R:114:25:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L114) *style:* **Variable or function name should be snake_case.**
```r
extractPLAF <- function(plafFileName){
                        ^~~~~~~~~~~~
```
[R/DEploidR.R:151:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L151) *style:* **Variable or function name should be snake_case.**
```r
plotProportions <- function(proportions, title = "Components",
^~~~~~~~~~~~~~~
```
[R/DEploidR.R:152:24:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                       ^~~~~~~
```
[R/DEploidR.R:152:37:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                                    ^~~~~~~~
```
[R/DEploidR.R:152:51:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                  ^~~~~~~~
```
[R/DEploidR.R:153:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L153) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColorBin <- 16
    ^~~~~~~~~~~~~~~
```
[R/DEploidR.R:200:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L200) *style:* **Variable or function name should be snake_case.**
```r
plotAltVsRef <- function(ref, alt, title = "Alt vs Ref",
^~~~~~~~~~~~
```
[R/DEploidR.R:201:21:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L201) *style:* **Variable or function name should be snake_case.**
```r
                    exclude.ref = c(), exclude.alt = c(),
                    ^~~~~~~~~~~
```
[R/DEploidR.R:201:40:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L201) *style:* **Variable or function name should be snake_case.**
```r
                    exclude.ref = c(), exclude.alt = c(),
                                       ^~~~~~~~~~~
```
[R/DEploidR.R:202:21:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                    ^~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:202:46:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                                             ^~~~~~~
```
[R/DEploidR.R:202:59:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                                                          ^~~~~~~~
```
[R/DEploidR.R:203:21:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L203) *style:* **Variable or function name should be snake_case.**
```r
                    cex.axis = 1){
                    ^~~~~~~~
```
[R/DEploidR.R:207:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L207) *style:* **Variable or function name should be snake_case.**
```r
    tmpRange <- 1.1 * mean(max(alt), max(ref))
    ^~~~~~~~
```
[R/DEploidR.R:266:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L266) *style:* **Variable or function name should be snake_case.**
```r
histWSAF <- function(obsWSAF, exclusive = TRUE,
^~~~~~~~
```
[R/DEploidR.R:266:22:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L266) *style:* **Variable or function name should be snake_case.**
```r
histWSAF <- function(obsWSAF, exclusive = TRUE,
                     ^~~~~~~
```
[R/DEploidR.R:268:17:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                ^~~~~~~
```
[R/DEploidR.R:268:30:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                             ^~~~~~~~
```
[R/DEploidR.R:268:44:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                                           ^~~~~~~~
```
[R/DEploidR.R:269:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L269) *style:* **Variable or function name should be snake_case.**
```r
    tmpWSAFIndex <- 1:length(obsWSAF)
    ^~~~~~~~~~~~
```
[R/DEploidR.R:271:9:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L271) *style:* **Variable or function name should be snake_case.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
        ^~~~~~~~~~~~
```
[R/DEploidR.R:271:31:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L271) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                              ^
```
[R/DEploidR.R:271:33:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L271) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                                ^
```
[R/DEploidR.R:323:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
^~~~~~~~~~~~~~
```
[R/DEploidR.R:323:34:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
                                 ^~~~~~~
```
[R/DEploidR.R:323:43:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
                                          ^~~~~~~
```
[R/DEploidR.R:324:23:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L324) *style:* **Variable or function name should be snake_case.**
```r
                      potentialOutliers = c(), title = "WSAF vs PLAF",
                      ^~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:325:23:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                      ^~~~~~~
```
[R/DEploidR.R:325:36:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                   ^~~~~~~~
```
[R/DEploidR.R:325:50:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                 ^~~~~~~~
```
[R/DEploidR.R:368:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L368) *style:* **Lines should not be more than 80 characters.**
```r
#' prop = PG0390CoverageV.deconv$Proportions[dim(PG0390CoverageV.deconv$Proportions)[1],]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:373:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
^~~~~~~~~~~~~~
```
[R/DEploidR.R:373:28:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
                           ^~~~~~~
```
[R/DEploidR.R:373:37:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
                                    ^~~~~~~
```
[R/DEploidR.R:375:23:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                      ^~~~~~~
```
[R/DEploidR.R:375:36:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                   ^~~~~~~~
```
[R/DEploidR.R:375:50:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                 ^~~~~~~~
```
[R/DEploidR.R:411:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L411) *style:* **Variable or function name should be snake_case.**
```r
computeObsWSAF <- function(alt, ref){
^~~~~~~~~~~~~~
```
[R/DEploidR.R:432:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
^~~~~~~~~~~~~~~~
```
[R/DEploidR.R:432:30:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
                             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:432:66:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
                                                                 ^~~~~~~~~~~~
```
[R/DEploidR.R:433:25:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L433) *style:* **Variable or function name should be snake_case.**
```r
                        numberOfInbreeding = 0){
                        ^~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:434:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L434) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColorBin <- 16
    ^~~~~~~~~~~~~~~
```
[R/DEploidR.R:435:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L435) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColors <- rainbow(rainbowColorBin)
    ^~~~~~~~~~~~~
```
[R/DEploidR.R:437:9:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L437) *style:* **Variable or function name should be snake_case.**
```r
        panelSize <- dim(posteriorProbabilities)[2] - numberOfInbreeding
        ^~~~~~~~~
```
[R/DEploidR.R:438:9:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L438) *style:* **Variable or function name should be snake_case.**
```r
        rainbowColors <- c(rep("#46a8e1", panelSize),
        ^~~~~~~~~~~~~
```
[R/DEploidR.R:446:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L446) *style:* **Variable or function name should be snake_case.**
```r
    newXaxt <- round(seq(1, dim(posteriorProbabilities)[1], length.out = 6))
    ^~~~~~~
```
[R/DEploidR.R:449:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/R/DEploidR.R#L449) *style:* **Variable or function name should be snake_case.**
```r
    newYaxt <- seq(0, 1, length.out = 3)
    ^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:3:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L3) *style:* **Variable or function name should be snake_case.**
```r
vcfFileName <- system.file("extdata", "PG0390-C.test.vcf.gz",
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:5:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L5) *style:* **Variable or function name should be snake_case.**
```r
plafFileName <- system.file("extdata", "labStrains.test.PLAF.txt",
^~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:7:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L7) *style:* **Variable or function name should be snake_case.**
```r
panelFileName <- system.file("extdata", "labStrains.test.panel.txt",
^~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:9:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L9) *style:* **Variable or function name should be snake_case.**
```r
refFileName <- system.file("extdata", "PG0390-C.test.ref", package = "DEploid")
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:10:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L10) *style:* **Variable or function name should be snake_case.**
```r
altFileName <- system.file("extdata", "PG0390-C.test.alt", package = "DEploid")
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:12:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L12) *style:* **Variable or function name should be snake_case.**
```r
PG0390CoverageVcf <- extractCoverageFromVcf(vcfFileName)
^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:15:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L15) *style:* **Variable or function name should be snake_case.**
```r
PG0390Deconv <- dEploid(paste("-vcf", vcfFileName, "-plaf", plafFileName,
^~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:18:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L18) *style:* **Variable or function name should be snake_case.**
```r
expWSAF <- t(PG0390Deconv$Haps) %*% prop
^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:21:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L21) *style:* **Variable or function name should be snake_case.**
```r
    PG0390CoverageTxt <- extractCoverageFromTxt(refFileName, altFileName)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:44:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L44) *style:* **Variable or function name should be snake_case.**
```r
    obsWSAF <- computeObsWSAF(PG0390CoverageVcf$altCount,
    ^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:46:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L46) *style:* **Variable or function name should be snake_case.**
```r
    potentialOutliers = c(5, 12, 25, 30, 35, 50)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:46:23:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L46) *style:* **Use <-, not =, for assignment.**
```r
    potentialOutliers = c(5, 12, 25, 30, 35, 50)
                      ^
```
[tests/testthat/test-DEploid_tools.R:127:5:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L127) *style:* **Variable or function name should be snake_case.**
```r
    potentialOutliers = c(1, 10, 20, 30, 40)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:127:23:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L127) *style:* **Use <-, not =, for assignment.**
```r
    potentialOutliers = c(1, 10, 20, 30, 40)
                      ^
```
[tests/testthat/test-DEploid_tools.R:133:55:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-DEploid_tools.R#L133) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                 potentialOutliers = potentialOutliers )
                                                      ^
```
[tests/testthat/test-dEploid.R:3:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-dEploid.R#L3) *style:* **Variable or function name should be snake_case.**
```r
vcfFileName <- system.file("extdata", "PG0390-C.test.vcf.gz",
^~~~~~~~~~~
```
[tests/testthat/test-dEploid.R:5:1:](https://github.com/liuyingh/DEploid-r/blob/1472f38aa041cbc0780ea79c126c1458cfd17e94/tests/testthat/test-dEploid.R#L5) *style:* **Variable or function name should be snake_case.**
```r
plafFileName <- system.file("extdata", "labStrains.test.PLAF.txt",
^~~~~~~~~~~~
```


The takedown request has finally appeared on GitHub's DMCA repo. https://github.com/github/dmca/blob/master/2017/2017-08-02-LevenLabs.md


Freakin translations. Do we REALLY need them? ;)


TeamCity libpalaso :: palaso-linux64-libpalaso-2.6 Continuous [Build 2.6.1495.2d2312d7f07a32e4e90e638f451ef0865827906b](http://build.palaso.org/viewLog.html?buildId=95904&buildTypeId=PalasoLinux64v26Cont) outcome was **FAILURE**
Summary: Exit code 1 (new) Build time: 00:00:17


![](https://github.trello.services/images/mini-trello-icon.png) [1.1](https://trello.com/c/T48VgubX/145-11)


There's still no reason to scan through the string twice: just call indexOf(), throw the result in a var, and, if it isn't -1, do the substr.


Yes, I accept the change


TeamCity libpalaso :: palaso-Linux64-lfmerge Continuous [Build 2.6.485.2d2312d7f07a32e4e90e638f451ef0865827906b](http://build.palaso.org/viewLog.html?buildId=95905&buildTypeId=PalasoLinux64lfmergeContinuous) outcome was **FAILURE**
Summary: Exit code 1 (new) Build time: 00:01:37


Why did you change the signature? To me, a return value looks better than passing by reference.


I think `Current.ValueChanged += OnSeek` in the constructor would've been better


@7Pass That feature is already available, although not through an ad blocker. Just add them to your HOSTS file and loop it to 127.0.0.1

ie;

functionalclam.com       127.0.0.1
104.198.107.72            127.0.0.1


If this works out well then we should ask @TheLinx to make a release.


dsplayer shouldnt be broken as both seturl and play work similar but different. care to try it out with that dsplayer you talk about ?:P


or remove the whole `OnSeek` stuff and add `progressBar.Current.ValueChanged += progress => Current?.Track.Seek(progress)` at the end of this method


sorry, didn't see this carefully that you're passing AccessedArgNum reference as well. You could still return pair and use std::tie if you want, but feel free to leave this as such.


ok, feel free to submit PR.


148484465_Issue#6189 (Nigusse) - i386-Windows-7-VisualStudio-14: OK (2579 of 2580 tests passed, 0 test warnings)

Failures:

EnergyPlusFixture Test Summary
 * Passed: 501
 * Failed: 1

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.png)


use the parameter instead songSelect


Ok. I'll remove it...


if `Beatmap` is not protected use that instead of SelectedBeatmap


TeamCity libpalaso :: palaso-win32-master Continuous [Build 4.0.366.2d2312d7f07a32e4e90e638f451ef0865827906b](http://build.palaso.org/viewLog.html?buildId=95903&buildTypeId=Libpalaso_PalasoWin32masterContinuous) outcome was **SUCCESS**
Summary: Tests passed: 3835, ignored: 191 Build time: 00:08:02


Yes, that's probably more sensible. The only issue is the values from the existing `css` key. This would either need to be renamed, or I could nest within the new `css` (`scss`) but potentially would then have to nest the `scss` stuff inside a further key.

So:

```
css: {
     baseFontSize: 16,
     scss: {
        'style': {
             src: 'develop/vendor/scss/style.scss',
             dest: './',
             outputStyle: compressed,
        }
    }
}


148484465_Issue#6189 (Nigusse) - x86_64-MacOS-10.9-clang: OK (2573 of 2574 tests passed, 1 test warnings)

Messages:

 * 1 test had: EIO diffs.
 * 1 test had: ESO small diffs.
 * 1 test had: MTR small diffs.

Failures:

EnergyPlusFixture Test Summary
 * Passed: 501
 * Failed: 1

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.png)


TeamCity libpalaso :: palaso-win-master Continuous [Build 4.0.59.2d2312d7f07a32e4e90e638f451ef0865827906b](http://build.palaso.org/viewLog.html?buildId=95908&buildTypeId=Libpalaso_PalasoWinmasterContinuous) outcome was **SUCCESS**
Summary: Tests passed: 3835, ignored: 191 Build time: 00:09:03


If you fixed a problem it is nice to make a pull request to the original project.


// Deleted


TeamCity libpalaso :: palaso-linux64-master Continuous [Build 4.0.340.2d2312d7f07a32e4e90e638f451ef0865827906b](http://build.palaso.org/viewLog.html?buildId=95906&buildTypeId=Libpalaso_PalasoLinux64masterContinuous) outcome was **SUCCESS**
Summary: Tests passed: 3892, ignored: 127 Build time: 00:10:23


TeamCity libpalaso :: palaso-linux64-libpalaso-3.1 Continuous [Build 3.1.454.2d2312d7f07a32e4e90e638f451ef0865827906b](http://build.palaso.org/viewLog.html?buildId=95909&buildTypeId=bt322) outcome was **FAILURE**
Summary: Exit code 1 (new) Build time: 00:00:09


Bluemix [toolchain](https://console-regional.ng.bluemix.net/devops/toolchains/45e09151-fe8c-4afa-aa50-7d8d81f6a348 "simple-toolchain-20170811171221740"): [Delivery Pipeline](https://console-regional.ng.bluemix.net/devops/pipelines/1362f64e-6212-4c54-95c3-5b9faa091697 "simple-toolchain-20170811171221740") deployed [simple-toolchain-20170811171221740](https://github.com/curtispd/simple-toolchain-20170811171221740/releases/tag/deploy-ibm-yp-us-south-curtispd-ca.ibm.com-dev-20170811-171642 "deploy-ibm-yp-us-south-curtispd-ca.ibm.com-dev-20170811-171642") to [dev](https://console.bluemix.net/apps/537a18f7-acfc-4e95-9948-df8bb1585e92?env_id=ibm:yp:us-south "ibm:yp:us-south:curtispd@ca.ibm.com:dev"), including this commit


Yeah, but the only thing with that is that if it sends malformed parameters, the proxy won't be reading them either. This may mean that more data is sent than necessary, but if they are just ignored by the proxy I see no problem with sending them on a logical level.


This claim is likely false and constitutes perjury, as the service in question is not an effective technical protective measure.
Their protection hinges on the continued operation and accessibility of the server, and the scripts are configured in a way that any failure of the server or connection to the server will completely remove the "protections" the service offers.


Created multidev environment [ci-drops-8#c8-95](https://dashboard.pantheon.io/sites/689219ca-6583-4af8-ab05-2cebf6ef79a0#c8-95).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://c8-95-ci-drops-8.pantheonsite.io/)


yep, that's pretty much what I'm doing, except that I only ever 'push' my master branch back up.  What I should learn to do is push local branches on my machine up to github as PRs so that they can accrete comment streams.  In the case of the path dialog, I would have liked to push a PR onto the existing PR... i _think_.  Anyhow, will try to learn this once there's less time pressure.  Right now I'm getting drawn into another project (actual music :)


148704793-Improvements-to-Ventilation-Control-for-DOAS-AirLoop-#6205 (lgu1234) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-UnitTestsCoverage-Debug: OK (1373 of 1373 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-39.07%25-green.png)


Does HOSTS work on IP addresses like that on all platforms?
And if Leven Labs were to DMCA the reply @Skaendo it would be yet another offense of perjury.


As discussed, transferring to issue in working space!


The build folder contains html file to be run using preferred browser i.e. FireFox.


Enabling config BOARDTEMP_WORK would also fix that assuming you already merged MOVZX boardtemp commit


Line 823 needs to be relabeled 2310C.


[Automation framework BDD.docx](https://github.com/Jazzkaur/Selenium/files/1218603/Automation.framework.BDD.docx)


I heard about this from another site and registered a Github account just to say this. Is the following possible; get a list of every. single. site. that uses BlockAdBlock and blacklist those sites completely! I KIND OF see their point about bypassing paywalls to get to protected content. But, if the entire site is blocked, not just the paywall roadblock, what could they cry about then? That's what I do now, if I visit a site that tells me to remove AdBlockPlus before I can see their content, I simple close the tab and don't bother going back there. As far as I'm concerned, no loss on my part. As others have said, this is a test case and if it stands, it will open the gates for others to abuse the DMCA process and Easylist will become useless as will uBo and all the others. Might be time to host Adblock and/or Easylist in a country that is beyond DMCA, if such a country exists. Maybe Turkey? North Korea?


automation


* Change implementation to use mongo - from Assignment 5
* Change folder name from _**assignment**_ to _**project**_


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.21 Configure logrotate](https://trello.com/c/QizNRKY4/178-62121-configure-logrotate)


See also the props ginsu in https://github.com/folio-org/stripes-components/blob/master/util/separateComponentProps.js, which splits a component's `props` object in two: one with all the keys that are defined on the component, and one with everything else. If the component's props include a key that you want to push down to the child, e.g. `id`, you'll now have to do that explicitly, but it allows you to avoid lines like
```
const {id, foo, bar, junk1, junk2, ...inputCustom} = this.props;
```
where you pull a bunch of junk keys out just to avoid having them in `inputCustom` when you do
```
<input id={id} {...inputCustom} />
```
a few lines later.


![](https://github.trello.services/images/mini-trello-icon.png) [10.1 Set SSH Protocol to 2](https://trello.com/c/hTeF0HjO/78-101-set-ssh-protocol-to-2)


![](https://github.trello.services/images/mini-trello-icon.png) [4.1 Set User/Group Owner on /boot/grub2/grub.cfg](https://trello.com/c/FNVZ1fbH/146-41-set-user-group-owner-on-boot-grub2-grubcfg)


@roadhazard The removed line does just that, blocks an entire website.  What Leven Labs is demanding is to prevent end users from blocking access to their sites.
Placing the list outside the USA would not prevent liability from US based complainants, as is the case here.


@WilliamFeely Yes, all OSs have a host file and they all work the same. If you are running on Windows you need to open notepad with administrator privys and then open hosts through it. I don't remember where it is located but that shouldn't be too hard to figure out. For Linux, # nano /etc/hosts


* Rename service files from _**assignment**_ to _**project**_
* Replace files with updates - from Assignment 5


![](https://github.trello.services/images/mini-trello-icon.png) [10.1 Set SSH Protocol to 2](https://trello.com/c/DXTGVajl/145-101-set-ssh-protocol-to-2)


I have deployed this commit :shipit:.


![](https://github.trello.services/images/mini-trello-icon.png) [4.2 Set Permissions on /boot/grub2/grub.cfg](https://trello.com/c/YQmWpSEx/147-42-set-permissions-on-boot-grub2-grubcfg)


![](https://github.trello.services/images/mini-trello-icon.png) [4.3 Set Boot Loader Password](https://trello.com/c/8uKoGMiE/148-43-set-boot-loader-password)


Assert here too ?


![](https://github.trello.services/images/mini-trello-icon.png) [5.1 Restrict Core Dumps](https://trello.com/c/hDOI7y7q/149-51-restrict-core-dumps)


huauhauhhuauhahu assim não dá ficar programando as 11 da noite XP


![](https://github.trello.services/images/mini-trello-icon.png) [5.2 Enable Randomized Virtual Memory Region Placement](https://trello.com/c/sNkQ5XPF/150-52-enable-randomized-virtual-memory-region-placement)


**Verbal Prompt**


![](https://github.trello.services/images/mini-trello-icon.png) [6.1.1 Install the rsyslog package](https://trello.com/c/DTtCr6lH/151-611-install-the-rsyslog-package)


@Skaendo The directory is %WINDIR%\System32\drivers\etc\hosts
On 64-bit systems, that directory needs to be accessed from a 64-bit view, for example opening the 64-bit version of Command Prompt and not the version in SYSWOW64.


![](https://github.trello.services/images/mini-trello-icon.png) [6.1.2 Activate the rsyslog Service](https://trello.com/c/1frI4Ey5/152-612-activate-the-rsyslog-service)


![](https://github.trello.services/images/mini-trello-icon.png) [6.1.3 Configure /etc/rsyslog.conf](https://trello.com/c/CNhPoYvH/153-613-configure-etc-rsyslogconf)


The following doc(s) have been deployed to the [modules208](https://modules208-static-docs.pantheonsite.io/docs) Multidev environment:
- [/docs/modules](https://modules208-static-docs.pantheonsite.io/docs/modules)
- [/docs/pantheon_api-module](https://modules208-static-docs.pantheonsite.io/docs/pantheon_api-module)


![](https://github.trello.services/images/mini-trello-icon.png) [6.1.4 Create and Set Permissions on rsyslog Log Files](https://trello.com/c/15ZM8K4K/154-614-create-and-set-permissions-on-rsyslog-log-files)


![](https://github.trello.services/images/mini-trello-icon.png) [6.1.5 Configure rsyslog to Send Logs to a Remote Log Host](https://trello.com/c/oSU8Q6mH/155-615-configure-rsyslog-to-send-logs-to-a-remote-log-host)


It seems the **this.config.minimize.dom** is set when the Minimize is created.
So, the previous behavior of keeping the casing is lost, because the dom is never null/undefined.


![](https://github.trello.services/images/mini-trello-icon.png) [6.1.6 Accept Remote rsyslog Messages Only on Designated Log Hosts](https://trello.com/c/bJTipVbg/156-616-accept-remote-rsyslog-messages-only-on-designated-log-hosts)


One thing you should try to do is make one logical change per commit. Here you have 3. The only thing I saw when I looked at this commit in the list is "*- Increase size of stars*", which doesn't describe the contents completely.


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.1 Configure Audit Log Storage Size](https://trello.com/c/YcUO550G/157-6211-configure-audit-log-storage-size)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.2 Keep All Auditing Information](https://trello.com/c/CUTDRo32/158-6212-keep-all-auditing-information)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.3 Disable System on Audit Log Full](https://trello.com/c/TK1533Ok/159-6213-disable-system-on-audit-log-full)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.4 Enable auditd Service](https://trello.com/c/SC5O8jMz/160-6214-enable-auditd-service)


We have created a module name **thinkster.posts.directives**. This means we will introduce the concept of directives to our app in this chapter.


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.5 Enable Auditing for Processes That Start Prior to auditd](https://trello.com/c/7P6hj8Rh/161-6215-enable-auditing-for-processes-that-start-prior-to-auditd)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.6 Record Events That Modify Date and Time Information](https://trello.com/c/nsndGqGO/162-6216-record-events-that-modify-date-and-time-information)


thanks, new branch has it here https://github.com/openemr/openemr/pull/1004/commits/aec91b08eeedc0815c4c2422e5f07dcdc4732f0a


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.7 Record Events That Modify User/Group Information](https://trello.com/c/ukuVPntm/163-6217-record-events-that-modify-user-group-information)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.8 Record Events That Modify the System's Network Environment](https://trello.com/c/e8ZbjUw4/164-6218-record-events-that-modify-the-systems-network-environment)


#171 and #172


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.9 Record Events That Modify the System's Mandatory Access Controls](https://trello.com/c/aMPgVE3h/165-6219-record-events-that-modify-the-systems-mandatory-access-controls)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.10 Collect Login and Logout Events](https://trello.com/c/hqVPIUMd/166-62110-collect-login-and-logout-events)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.11 Collect Session Initiation Information](https://trello.com/c/CnSPqBQ4/167-62111-collect-session-initiation-information)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.12 Collect Discretionary Access Control Permission Modification Events](https://trello.com/c/kWrc82eM/168-62112-collect-discretionary-access-control-permission-modification-events)


![](https://github.trello.services/images/mini-trello-icon.png) [10.2 Set LogLevel to INFO](https://trello.com/c/CoGVFcrr/80-102-set-loglevel-to-info)


Here the thinkster.posts.directives module requires the ngDialog module. ngDialog is included in the boilerplate project and handles the display of modals. We will use a modal in the next chapter when we write code for creating new posts.


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.13 Collect Unsuccessful Unauthorized Access Attempts to Files](https://trello.com/c/668UGP1c/169-62113-collect-unsuccessful-unauthorized-access-attempts-to-files)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.14 Collect Use of Privileged Commands](https://trello.com/c/vh0Nicag/170-62114-collect-use-of-privileged-commands)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.15 Collect Successful File System Mounts](https://trello.com/c/nTHf8tbZ/171-62115-collect-successful-file-system-mounts)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.16 Collect File Deletion Events by User](https://trello.com/c/jwYohjhT/172-62116-collect-file-deletion-events-by-user)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.17 Collect Changes to System Administration Scope](https://trello.com/c/eIi8MZLp/173-62117-collect-changes-to-system-administration-scope)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.18 Collect System Administrator Actions (sudolog)](https://trello.com/c/laVEQ65g/174-62118-collect-system-administrator-actions-sudolog)


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.19 Collect Kernel Module Loading and Unloading](https://trello.com/c/NknXoMCC/176-62119-collect-kernel-module-loading-and-unloading)


![](https://github.trello.services/images/mini-trello-icon.png) [10.2 Set LogLevel to INFO](https://trello.com/c/xZYN0vVx/146-102-set-loglevel-to-info)


Könnte man zentrale Konfigurationen in eine Configure-Datei auslagern?


![](https://github.trello.services/images/mini-trello-icon.png) [6.2.1.20 Make the Audit Configuration Immutable](https://trello.com/c/5CLWJMxj/177-62120-make-the-audit-configuration-immutable)


@WilliamFeely Oh, OK. Now I understand better. WOW, this makes things 10,000 worse. What in the actual F!??!


Created multidev environment [jaypeak#ci-126](https://dashboard.pantheon.io/sites/63ccddbd-731f-4f84-badc-3edee2e28541#ci-126).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-126-jaypeak.pantheonsite.io/)


Why `k` only partially changed to `params` here?