还需要完成其他操作


its called better() but it is not


good


`getBundleFromAccountAndKey`?


А есть ли смысл навешивать это на каждую ноду?
Кажется задачу можно решить делегированием?


very goof!


`getSubscriptionBundleForAccountAndKey`?


Created multidev environment [mann-web#ci-1](https://dashboard.pantheon.io/sites/5c8ef4ff-2765-4fe6-b6e5-ce0099a410ba#ci-1).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1-mann-web.pantheonsite.io/)


Should be wrapped in `(eval-when-compile...)` perhaps?


Is `updateBundleExternalKey` exposed in JAX-RS today?


Thanks for this.  It was not visible in "untracked files" because of an entry in .gitignore.


На каждый набор входных данных нужен отдельный тест, именуемый таким образом, чтобы было понятно, чем именно этот набор данных уникален. [Тут ](http://mfranc.com/unit-testing/good-unit-test-one-assert/)и в книге The Art Of Unit Testing есть обоснования.


Small mistake here. You probably want to do this instead:
```
UPDATE dbscripts_on_creature_movement SET datalong = 10015 WHERE id = 2213002 AND command = 0;
```
When checking for buddy_entry you update three of the scripts instead of only the correct one.


Oh


good point - will update


Класс называется EquationIsCorrect, а единственный тест в нём проверяет WrongIputFormat :)


Same here


Could you update the branch alias to `1.5.x-dev` please?


呃呃呃


You can reuse self._fake_snapshot_name.


стоит избегать в тестах циклов и условных конструкций. они должны быть максимально простыми, чтобы в них было очень сложно ошибиться и не пришлось бы писать тесты на тесты.
ради простоты и читаемости допустимо даже некоторое дублирование


1.  sweep coverage
2.  participant selection
3.  greedy strategy
4.  linear programming


lol


iteration method is not correct. I have simplified it


if ticket is not valid, so it cannot be in use right????

probably we can change the in use method one????


you've got to leave comments so that people other than you now, which is also yourself in a week time, can understand why you changed what you changed


`dest_imsi` should be compare with boolean value


нарушение конвенции arrange act assert. у тестов должна быть стандартная структура, чтобы их можно было легко прочитать.  нужно разделить act и assert, это натуральным образом получается, когда один тест делает одну проверку


@scoopxyz
You could somethign shortly explaining how to update a fork with master changes.

* Update your fork::
       git pull upstream master


FA-201 #complete #time 10m


конечно, wrongInputs может быть очень много и всех непересчесть, но стоило добавить хотя бы те, которые бы вскрыли ошибки в твоей валидации


Wondering if this will have a performance impact on large tables. Looking at an `EXPLAIN`, the join type is now `range` vs `ref` (expected due to the `LIKE` search), and hits will be rare (`transfer` isn't common).


циклов стоит избегать. в этом случае проверку можно было сделать либо тремя Assert'ами, или с помощью класса CollectionAssert


We can't set `tabindex` explicitly, since `this.controls` moves the tabindex using the arrow keys.
https://github.com/h5p/h5p-course-presentation/blob/1e640bede632437fcbaaafce2f1c40f2f47f74f1/src/scripts/keyword-menu.js#L108


If an error happens here we should log it.


please log the error if it isn't nil.


FYI, I could not get ruby 2.4.x to build under macos 10.12. I had to update to 10.13 (High Sierra), and then the build and install went through w/o issues. site-webdev is now using 2.4.2 (the latest stable ruby release) - https://github.com/dart-lang/site-webdev/pull/1077.


It works? I've had a kernel panic with this version.


t


Fixed!


@ppigazzini
I do, and it was not meant to sound like I don't, I just wanted to express that it is getting more challenging to improve further, and I sometimes am a bit unsatisfied that in recent times most of my patches are just more or less random tweaks without many new ideas. But I guess that is hard to avoid as playing strength is increasing and ideas for big changes are mostly exhausted since they either are already in the code or did not prove to work well.


Fixed! (Should be)


I'd rather declare it as
```
findProperty("...proguard")?.toString()?.toBoolean()
 ?: hasProperty("teamcity.version")
```
And omit the assigment from gradle properties


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/849fc691-8e49-48bc-9659-b837ee9a1f27 "UI-yp-SimpleTC0927T092721"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/733f3e0a-ab6a-496d-b8c2-e2968cba0de6 "UI-yp-SimpleTC0927T092721") deployed [UI-yp-SimpleTC0927T092721](https://github.com/idsb3t1/UI-yp-SimpleTC0927T092721/releases/tag/deploy-ibm-yp-us-south-idsb3t4-us.ibm.com-dev-20170927-133309 "deploy-ibm-yp-us-south-idsb3t4-us.ibm.com-dev-20170927-133309") to [dev](https://console.bluemix.net/apps/1755db91-543f-406c-9880-36875ec6bc4c?env_id=ibm:yp:us-south "ibm:yp:us-south:idsb3t4@us.ibm.com:dev"), including this commit


есть расхожее мнение, что комментарии не бывают лишними - бывают. хороший код не требует пояснений и сам по себе читается как комментарии.


this one may have failed because greenkeeper didn't update `react`, `react-dom` and `react-test-renderer` at the same time, @iamstarkov would that be the case?


Looks like there have been some additional commits to the head branch since #180 was first opened. I'll rebase it for you to ensure it's running the latest tests. (It'll take me a couple of minutes.)


In the Compatible section, you could ad that:
1) Maya supports OCIO since 2016 Ext1.
2) Arnold 5 supports OCIO


Awkward :'(

That break was me :joy:
Thanks for fix!


As I mentioned the constructor is not even relevant to the synthesizer because it uses reflection to initialize those objects. Reflection can bypass many compiler checks and things people consider "standard" in Java. In this case, _try and _catch are assigned reflectively, not through the constructor. The code you see in the constructor is used by the DOM driver, which is a separate Bayou application that doesn't use reflection (and doesn't need exceptToClause).


Or even just `hasProperty("teamcity")"` as it is here https://github.com/JetBrains/kotlin/blob/497251a6d7adc450bb4e24f4b872bc414ac913ab/libraries/stdlib/js/build.gradle#L264


Inherit from systemd and set the variable so it doesn't get enabled automatically. Then remove these 2 lines


Looks like there have been some additional commits to the head branch since #178 was first opened. I'll rebase it for you to ensure it's running the latest tests. (It'll take me a couple of minutes.)


Minor: in Kotlin I prefer writing such conditions as boolean expressions, e.g.:
```
    expression is KtCallExpression && expression.calleeExpression?.text = "contract"
```
It makes code easier to follow, you don't have to keep "path predicate" in mind.


@ianfab think also if it's the moment to change the SPRT intervals


Ist das in das Tinyfy-Addon für den Medienmanager von hirbod gewandert?


Done.


shouldnt have been removed


`byteEquals( this.passwordHash, that.passwordHash );` if you want this and that format


I would not fly like this as it will stop when you loose connection :)

`systemctl start aero-optical-flow` to start and
`systemctl enable aero-optical-flow` to start it automatically on boot.


コメントテスト


$ is not in use. One tip is to use eslint in your editor, then these things won't happen...


@s4mpl3d `||` kommt auf einer neuen Zeile:

```
if ($w instanceof Expr
    || is_string($w))
```


@s4mpl3d elseif statt else - if


This line has more than 80 columns.


在 scripts 里加 "webpack": "^1.14.0" 是啥意思？


Was this change (`P m -3` -> `P m 3` for SG 200) accidental?


Hey, I'm wondering unshift/shift will cause what kind of bug in safari and how can I reproduce that?


It would be more smooth if I automatically got redirected to the application, during Dave Cheney's talk about Understanding the Go execution tracer in TPE I found myself just coping the console output url leading me to page not found.


Yup, on Build Server it failed to compile also. Requesting Fix...


No since I'm not using any v3 features. This project is one year old and I like to keep it compatible with older Docker and Compose versions.


jQuery is referenced in so many ways inside the CP editor: H5PEditor.$, ns.$ and H5P.jQuery. We really should provide the jQuery reference the way we do it for the libraries. I don't think that is part of this task, though, but I don't think we should add a fourth method of referencing jquery here...


As discussed, I think the main side effect that bothers me is that the behavior isn't consistent between transfer and cancellation: for a given key, the API `getBundlesForKey` shows the history through transfers, but not through cancellations.

To re-use a bundle key post cancellation for a different account, I think it's fine if the operator triggers a transfer first (not sure if we can transfer cancelled subscriptions though?), but not if he renames it manually (history is lost unless he uses the magic prefix).

To re-use a bundle key post cancellation for the same account (i.e. re-activate a subscription), the operator would need to rename it now manually and then create a new subscription. In that case, the history is lost unless he uses the magic prefix.

I don't have a good proposal (yet... 🤔 💭), but I think we should come up with a story (either enforced in the code or documented) to have a consistent, intuitive, behavior.


Thank you w3icon, removing the [Required] on Genre fixed my problem!


Ничоси, круто.


Intial load


comment fzefzfeezf


something new


declarations without implementation


Shouldn't this contain the name of the file?


This limitation has been lifted recently.


We should be specific about which element we try to find. If we add more elements in the future with role=menuitems, this might break. And I am really not sure you need a selector at all? Won't $li.next().focus() work?


Missing JSDOC


Is that meant to be a MUST must?


Missing ```#ifndef``` ```#define```?


Maybe instead

```
; From [@!RFC5321]; used as the domain for the `contact-info` address in the report body
```


I think you accidentally committed the lock file


While you're at it, would be nice if this could be replaced by $li.removeClass...


Thank you! Very comfortably!


@ChristianMoesl this could just be `INT64_MAX = twoToThePowerOf(CPUBITWIDTH - 1) - 1;`, no?


It seems your emulator has a screen size that is too small to show the ads banner. Try larger emulator.


TeamCity Glyssen :: Glyssen pull requests [Build *.*.636.b95897019006dc1b5a786566c90078cb76df3efc](http://build.palaso.org/viewLog.html?buildId=98317&buildTypeId=Glyssen_GlyssenPullRequests) outcome was **SUCCESS**
Summary: Tests passed: 1776, ignored: 18 Build time: 00:17:17


Same as above. Could be replaced by $li.focus() ?


The ```if defined(__powerpc64__)``` in the file ```RegisterInfos_ppc64le.h```, wouldn't be better?


YOU NOOB


@milicag : It is better to keep `Td` and propagate it as otherwise, if it is not present and the user selects a PID controller, the model would be singular.
Most users will keep PI, but the overhead of assigning `Td` is negligible.


@ChristianMoesl `VOID`, `IF`, `ELSE`, `WHILE`, `RETURN` in lower case, please. Appears to be an old, unimportant issue but whatever. Thanks!


![](https://github.trello.services/images/mini-trello-icon.png) [Світ](https://trello.com/c/7gzHxDiN/22-%D1%81%D0%B2%D1%96%D1%82)


백준 1931번 풀이


I would have written:
hasTitle = (H5P.trim(keyword) !== '');
if (!hasTitle) {
  keyword = that.cp.l10n.noTitle;
}

No big deal. Potatos potatoes...


![](https://github.trello.services/images/mini-trello-icon.png) [Метод моделі MOSES](https://trello.com/c/Yw2ezgIx/80-%D0%BC%D0%B5%D1%82%D0%BE%D0%B4-%D0%BC%D0%BE%D0%B4%D0%B5%D0%BB%D1%96-moses)


![](https://github.trello.services/images/mini-trello-icon.png) [3cc: Investigate how to make the sensor data reliable (from the sensors at the front)](https://trello.com/c/MTXbfonz/68-3cc-investigate-how-to-make-the-sensor-data-reliable-from-the-sensors-at-the-front)


Why do you need this? All the RemoteFS class methods used by the tested method are mocked, while this one is not used directly.


@ChristianMoesl are you sure you don't want to check this? `b >= CPUBITWIDTH` will result in an unsafe memory access in `twoToThePowerOf`, no?


@Creeperface01  @boybook I have the bug, I know why the network upload is increasing all the time.
I have a task which do sign.setText (...) if I comment this out all works fine.

this.spawnToAll(); in the setText function of BlockEntitySign causes the increasing network upload! :c


great


Yo should actually mock the public one ('get_active_image_from_info'), called by the tested method.


The tested method calls this directly just once.


Unrelated change.


That file is an artifact, I see now that the run scenarios are still a bit messy. It was my plan, or I had at some point separate tests for local socket_fs and socket_fs over File_system.


I didn't know that! That's evil!

Thanks. Maybe make a revert PR?


@ChristianMoesl can this be generalized from `32`? you are using a variable on instruction size, no?


You can write this as "messages_in_queue(request_queue) > 0".


I'd remove "added in Kotlin 1.2 Beta" because it was actually added a long time ago, and it's not clear what really was added in 1.2 Beta (except for the new modifiers)


Nice. Looks like it's a fair amount of Elo?


are you sure about this change??


can you create a new release for this change?


Right. And $loop as well


Since this is a fix for an issue I opened I wanted to comment.

This fix seems like it introduces what will be an obscure bug, as if you had a key called "key_name" and a key called "KeyName" then you will get some kind of unintended collision.  It seems like this issue will very rarely occur, but if it does it will be very difficult to diagnose.


Untested. Also, the alignment should be fixed.


We've been asked not to update to 10.13.


@siglo50 If you have doubts and can provide some breaking test cases, please open a ticket.


@ChristianMoesl is this really standard?


Dave,

I have been trying to hex edit the MTSX.odb file for some time with no success.. Is there anychance you have one for the 900 ham band already modified?  I can even send the clean file to you if needed.


Merge


That was my assumption but I could find this trace of the intention only ;-) We may address that later (when optimizing network performance).


Hi @lucasw !

I am using the common_audio package, in particular the new feature you have introduced, in order to run it in a Raspberry Pi 3.

However, even if the gstream command:

`gst-launch-0.10 alsasrc device=hw:1,0 ! audioconvert ! audioresample ! alsasink`

works properly forwarding the audio from the input mic to the headphones, I am not able to do the same using two ROS nodes (an audio_capture and an audio_play node).

In particular, when I run the audio_capture node, the following error pops out:

`[ERROR] [1506520511.899896918]: Failed to create encoder element`

I am quite sure it is due to some configuration problems related to the hw device specification, to this aim I am trying to pin out the correct device, which is the device=hw:1,0, by modyfing the capture.launch file substituting:

`<arg name="device" default=""/>`    with  `<arg name="device" default="hw:1,0"/>`

but, again, it is not working.

Do you have any suggestions?

Thanks a lot.


No need to use the '_' prefix for variable names. Also, I'd use 'fake_snapshot_info', the 'expected' word suggests a value against which we perform some kind of validation.


造啦


Bluemix [toolchain](https://console-regional.stage1.ng.bluemix.net/devops/toolchains/cca2e941-032b-48a1-aec1-088b98433011 "UI-ys1int-SimpleTC0927T100207"): [Delivery Pipeline](https://console-regional.stage1.ng.bluemix.net/devops/pipelines/67237009-76c3-4d47-9d75-98868186f060 "UI-ys1int-SimpleTC0927T100207") deployed [UI-ys1int-SimpleTC0927T100207](https://github.com/idsb3t1/UI-ys1int-SimpleTC0927T100207/releases/tag/deploy-ibm-ys1-us-south-idsb3t3-us.ibm.com-dev-20170927-140701 "deploy-ibm-ys1-us-south-idsb3t3-us.ibm.com-dev-20170927-140701") to [dev](https://console.stage1.bluemix.net/apps/fb539abb-a4f6-4201-8d55-58b838486f35?env_id=ibm:ys1:us-south "ibm:ys1:us-south:idsb3t3@us.ibm.com:dev"), including this commit


:heart:


NULL pointer somewhere, I'll see if I can patch.


Fair Distribution


The first addition is correct. The extra NARRATOR_MESSAGE is a debugging line I forgot to remove. Made a commit that fixes it.


I'd use the term _actual declaration_ instead, to avoid confusion with implementing interfaces (the same reason we got rid of `impl`).


And If the player disconnects the network upload is still there (it should be 0 if no player is online)


Missing `actual`


looks stupid


一个空格也update一下是不是太繁琐了…


Sorry, I got myself confused. Yes, this is already released in 1.8.0.


Created multidev environment [monthofmud#pr-hof](https://dashboard.pantheon.io/sites/c1008179-94f3-4a56-ba0b-53c7f98ca3f8#pr-hof).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-hof-monthofmud.pantheonsite.io/)


Yes, because `ass-compiler` is not released to NPM yet. Its public API is almost shaped, but there are still some chores to be done. I plan to release it this weekend.


[R/collect_file_posterior_crown_ages.R:15:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_crown_ages.R#L15) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_file_posterior_crown_ages <- function(filename) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_crown_ages.R:31:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_crown_ages.R#L31) *style:* **Lines should not be more than 80 characters.**
```r
        crown_ages <- wiritttes::get_posteriors(file)[[index]][[1]]$estimates$TreeHeight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_likelihoods.R:6:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_likelihoods.R#L6) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_file_posterior_likelihoods <- function(filename) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_likelihoods.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_likelihoods.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
        likelihoods <- wiritttes::get_posteriors(file)[[index]][[1]]$estimates$likelihood
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:21:3:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_nllts.R#L21) *warning:* **local variable ‘parameters’ assigned but may not be used**
```r
  parameters <- file$parameters
  ^~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_nllts.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
  napst <- wiritttes::extract_napst(file) # Number of Alignments Per Species Tree
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:40:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_nllts.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
        phylogenies <- wiritttes::get_posterior(file = file, sti = sti, ai = ai, pi = pi)$trees
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_alignments_dmid.R:27:29:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L27) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    file_index <- 1 + trunc((row - 1)/ 4)
                            ^
```
[R/collect_files_alignments_dmid.R:27:38:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L27) *style:* **Put spaces around all infix operators.**
```r
    file_index <- 1 + trunc((row - 1)/ 4)
                                    ~^
```
[R/collect_files_alignments_dmid.R:35:18:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L35) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      ai <- 1 + ((row - 1 ) %% n_alignments)
                 ^
```
[R/collect_files_alignments_dmid.R:35:26:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L35) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      ai <- 1 + ((row - 1 ) %% n_alignments)
                         ^
```
[R/collect_files_esses.R:47:21:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L47) *style:* **Commas should always have a space after.**
```r
    sti = rep(seq(1,2), each = napst * nppa, times = n_files),
                    ^
```
[R/collect_files_esses.R:65:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L65) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/collect_files_esses.R:102:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L102) *style:* **Lines should not be more than 80 characters.**
```r
collect_files_esses_from_log_files <- function(filenames, show_progress = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_esses.R:102:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L102) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_esses_from_log_files <- function(filenames, show_progress = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_esses.R:137:21:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L137) *style:* **Commas should always have a space after.**
```r
    sti = rep(seq(1,2), each = napst * nppa, times = n_files),
                    ^
```
[R/collect_files_esses.R:198:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L198) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/collect_files_operators.R:12:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
  filenames = find_paths(c("collect_files_operators.xml.state", "collect_files_operators_empty.xml.state")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_operators.R:22:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L22) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/collect_files_operators.R:47:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L47) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/collect_files_operators.R:67:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L67) *style:* **Lines should not be more than 80 characters.**
```r
  expected_names <- c("filename", "operator", "p", "accept", "reject", "acceptFC",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_posterior_crown_ages.R:18:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_posterior_crown_ages.R#L18) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_posterior_crown_ages <- function(filenames, verbose = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_posterior_likelihoods.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_posterior_likelihoods.R#L17) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_posterior_likelihoods <- function(filenames) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:10:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#'   `alignment` and `no_dnabin` are caused from an unreadable or unmanagable alignment,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:35:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L35) *style:* **Lines should not be more than 80 characters.**
```r
  if (length(grep(pattern = "slurmstepd: error: Exceeded step memory limit at some point", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:37:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "slurmstepd: error: get_exit_code task 0 died by signal", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:39:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L39) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "\\.Call\\(\"rawStreamToDNAbin\", x\\)", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:41:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error in value\\[\\[3L\\]\\]\\(cond\\) : invalid file", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:43:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error: file.exists\\(beast_trees_filename\\) is not TRUE", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:45:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "In ape::read.FASTA\\(fasta_filename\\) :rm: write error: Input/output error", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:47:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error in data.frame\\(sequences, row.names = labels\\)", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:49:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "embedded nul\\(s\\) found in input", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:51:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error: class\\(sequences_dnabin\\) == \"DNAbin\" is not TRUE", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:58:18:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L58) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    line <- text[ grep(pattern = "Used CPU time", x = text) ]
                 ^
```
[R/collect_log_file_info.R:58:60:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L58) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    line <- text[ grep(pattern = "Used CPU time", x = text) ]
                                                           ^
```
[R/collect_log_file_info.R:59:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
    t <- stringr::str_extract(line, "[:digit:][:digit:]:[:digit:][:digit:]:[:digit:][:digit:]")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:73:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L73) *style:* **Commented code should be removed.**
```r
  #   line <- text[ grep(pattern = "sys\t", x = text) ]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:74:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L74) *style:* **Commented code should be removed.**
```r
  #   t <- stringr::str_split(str = line, "\t")[[1]][2]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:76:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L76) *style:* **Commented code should be removed.**
```r
  #   n_secs <- lubridate::period_to_seconds(lubridate::ms(t))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:77:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L77) *style:* **Commented code should be removed.**
```r
  #   df$sys_time <- n_secs
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_files_info.R:40:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_files_info.R#L40) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/create_log_filenames.R:19:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/create_log_filenames.R#L19) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/file_to_lines.R:5:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/file_to_lines.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#'   text <- wiritttea::file_to_lines(filename = wiritttea::find_path("add_alignments_ok.log"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_cas.R:2:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_cas.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param filename name of the file with all the collected posteriors' crown ages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_cas.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_cas.R#L17) *style:* **Variable and function names should not be longer than 30 characters.**
```r
read_collected_posterior_crown_ages <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_liks.R:2:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_liks.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param filename name of the file with all the collected posteriors' likelihoods
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_liks.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_liks.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
read_collected_posterior_likelihoods <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_esses.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_esses.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
  filenames <- find_paths(c("toy_example_3.RDa", "collect_files_esses_invalid.RDa"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_esses.R:24:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_esses.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
  filenames <- find_paths(c("collect_files_esses_invalid.RDa", "toy_example_3.RDa"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:6:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
    filenames = rep(wiritttea::find_path("collect_files_operators.xml.state"), 2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:8:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
  expected_names <- c("filename", "operator", "p", "accept", "reject", "acceptFC",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:20:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
        c("collect_files_operators.xml.state", "collect_files_operators_empty.xml.state"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:23:4:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L23) *style:* **Commented code should be removed.**
```r
  #write.csv(df_operators, "~/read_collected_operators.csv")
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_crown_ages.R:16:5:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_posterior_crown_ages.R#L16) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_crown_ages.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_likelihoods.R:15:5:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_posterior_likelihoods.R#L15) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_likelihoods.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_nltts.R:16:5:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_posterior_nltts.R#L16) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_nltts.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_log_file_info.R:75:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L75) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:76:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L76) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:77:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L77) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:78:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L78) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:79:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L79) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:80:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L80) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:81:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L81) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:82:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L82) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:83:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L83) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:84:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L84) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:85:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L85) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:86:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L86) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:87:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L87) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-create_log_filenames.R:6:68:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-create_log_filenames.R#L6) *style:* **Commas should always have a space after.**
```r
  log_filenames <- wiritttea::create_log_filenames(rda_filename, 2,2,2)
                                                                   ^
```
[tests/testthat/test-create_log_filenames.R:6:70:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-create_log_filenames.R#L6) *style:* **Commas should always have a space after.**
```r
  log_filenames <- wiritttea::create_log_filenames(rda_filename, 2,2,2)
                                                                     ^
```
[tests/testthat/test-file_to_lines.R:4:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-file_to_lines.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
  text <- wiritttea::file_to_lines(filename = wiritttea::find_path("add_alignments_ok.log"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


I think this should this be "@return bool" instead of just "return bool".


this is baser


Oh, great, thanks!


Created multidev environment [monthofmud#ci-36](https://dashboard.pantheon.io/sites/c1008179-94f3-4a56-ba0b-53c7f98ca3f8#ci-36).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-36-monthofmud.pantheonsite.io/)


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/93b8cbe4-f09b-4220-9948-6f03de5197a9 "UI-yp-SimpleTC0927T101625"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/10f72101-0606-4845-8b74-3d9b59847ee6 "UI-yp-SimpleTC0927T101625") deployed [UI-yp-SimpleTC0927T101625](https://github.com/idsb3t1/UI-yp-SimpleTC0927T101625/releases/tag/deploy-ibm-yp-us-south-idsb3t4-us.ibm.com-dev-20170927-142158 "deploy-ibm-yp-us-south-idsb3t4-us.ibm.com-dev-20170927-142158") to [dev](https://console.bluemix.net/apps/4866da7a-f37d-423b-89da-bacf7b987085?env_id=ibm:yp:us-south "ibm:yp:us-south:idsb3t4@us.ibm.com:dev"), including this commit


![](https://github.trello.services/images/mini-trello-icon.png) [Bei krForm Formatierung bitte auch time und date berücksichtigen, siehe Anhang](https://trello.com/c/UBhGzrVa/1-bei-krform-formatierung-bitte-auch-time-und-date-ber%C3%BCcksichtigen-siehe-anhang)


That was completely on purpose as it essentially didn't test anything.


Yeah, this happens occasionally. More often than not it's a *line-endings* thing, e.g. https://help.github.com/articles/dealing-with-line-endings/. It's been a while since I've run into that, so it's probably mainly now that you're contributing.

At any rate, you can at least _eye-ball_ the diff viewing by **Split**.
![image](https://user-images.githubusercontent.com/1165933/30918516-65ff6e90-a364-11e7-9a4d-825f14e01aca.png)

To answer your question: I added `@include reset-button()` at about Line 55, and a few lines at the very end, after about Line 134. Reason: each tab could be a `<button>`, and not always `<a>`.

[Ref #175]


Maybe I do not understand a thing in this lib, but in my version header files names differs, they all starts with FL_*, the same for classes names.
I couldn' find such class as Point.
I took this documentation: http://www.fltk.org/doc-1.3/basics.html if you look at it you will understand what I'm talking about
Version used in book and in your code looks like ver 2.0 but on fltk.org it is said that this version is dead
I'm totaly confused, if you can please help me find the truth!


> Just For Your Information

It seems your automatic publication also has broken due to migration to gitbox.


RIP
F F F


hi @arco
how to fix this?
i am building aospa
device/bq/msm8916-common/sepolicy/mm-qcamerad.te:2:ERROR 'unknown type mm-qcamerad' at token ';' on line 21196:
allow mm-qcamerad mpctl_socket:dir search;
#line 1 "device/bq/msm8916-common/sepolicy/mm-qcamerad.te"
checkpolicy:  error(s) encountered while parsing configuration


- Adding output of left and right eigenvectors properly normalized
- Substitution of the non Markovainity flux, with the fluxes of Beauchamp et al. (2012); they are two different things
-  Minor modifications in syntax


Changed to "in Kotlin 1.2"


fixed


@PauliusGrigaliunas  Yo. Pertvarkai bug'a?


I think the IDE still presumes that it exists, so I'd leave this in the docs for now; we can remove it later.


这个把 [defaultFilterFn](https://github.com/react-component/select/blob/5eae3629fff3532834007745d7b54de3ac6dc8e2/src/Select.jsx#L631) 覆盖掉了把？


This [is not supported](https://nodejs.org/api/buffer.html#buffer_new_buffer_arraybuffer_byteoffset_length) on Node < v6.0.0; there, you'll get garbage anytime `byteOffset > 0`, which affects not only code that explicitly does that but, also, literal strings.


@eternalsky


I see. Makes sense, just wasn't clear from the commit message.


`form onSubmit={(e) => this.handleSubmit(e)}>`

We need to pass on the event.


Here's a free API you can use: https://iextrading.com/developer/


```js
handleSubmit(e) {
   e.preventDefault();
```


Are there any Bugs filed for the "Firefox 55 does not render inline <img /> tags" and the "Edge does not render background-images" problems, at the corrosponding bug trackers?
I'd like to monitor them so I know when I can start using the new lib. (Chrome, FF and Edge should work)


@pbauer Jenkins CI reporting about code analysis
See the full report here: http://jenkins.plone.org/job/package-plone.app.linkintegrity/43/violations
```
plone/app/linkintegrity/testing.py:59:9: D001 found xmlconfig.file( replace it with self.loadZCML(
plone/app/linkintegrity/testing.py:144:50: C812 missing trailing comma
plone/app/linkintegrity/testing.py:149:50: C812 missing trailing comma
plone/app/linkintegrity/testing.py:154:49: C812 missing trailing comma
plone/app/linkintegrity/testing.py:158:49: C812 missing trailing comma
plone/app/linkintegrity/handlers.py:32:1: C901 'findObject' is too complex (12)
plone/app/linkintegrity/handlers.py:128:5: T000 Todo note found.
plone/app/linkintegrity/utils.py:13:42: C812 missing trailing comma
plone/app/linkintegrity/utils.py:40:42: C812 missing trailing comma
plone/app/linkintegrity/upgrades.py:4:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/upgrades.py:4:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/upgrades.py:4:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/upgrades.py:7:25: Q000 Remove bad quotes.
plone/app/linkintegrity/upgrades.py:8:1: I001 isort found an import in the wrong position
plone/app/linkintegrity/upgrades.py:9:1: I001 isort found an import in the wrong position
plone/app/linkintegrity/upgrades.py:11:1: I001 isort found an import in the wrong position
plone/app/linkintegrity/upgrades.py:42:5: T000 Todo note found.
plone/app/linkintegrity/upgrades.py:47:76: C812 missing trailing comma
plone/app/linkintegrity/browser/info.py:43:5: C901 'DeleteConfirmationInfo.get_breaches' is too complex (16)
plone/app/linkintegrity/browser/info.py:83:45: C812 missing trailing comma
plone/app/linkintegrity/browser/info.py:87:38: C812 missing trailing comma
plone/app/linkintegrity/browser/info.py:91:45: C812 missing trailing comma
plone/app/linkintegrity/browser/info.py:97:37: C812 missing trailing comma
plone/app/linkintegrity/browser/update.py:14:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/browser/update.py:14:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/browser/update.py:66:16: S001 found module formatter
plone/app/linkintegrity/tests/test_upgrade.py:6:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/tests/test_upgrade.py:6:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/tests/test_upgrade.py:6:1: I003 isort expected 1 blank line in imports, found 0
plone/app/linkintegrity/tests/test_upgrade.py:11:1: I001 isort found an import in the wrong position
plone/app/linkintegrity/tests/test_references.py:64:11: T000 Todo note found.
plone/app/linkintegrity/tests/test_references.py:87:23: C812 missing trailing comma
plone/app/linkintegrity/tests/test_references.py:101:23: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:59:11: T000 Todo note found.
plone/app/linkintegrity/tests/test_functional.py:149:65: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:150:14: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:213:59: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:214:14: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:296:59: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:297:14: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:304:34: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:308:34: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:336:65: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:337:14: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:342:34: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:375:65: C812 missing trailing comma
plone/app/linkintegrity/tests/test_functional.py:376:14: C812 missing trailing comma
```
Follow [these instructions](https://github.com/plone/jenkins.plone.org/blob/master/docs/source/run-qa-on-package.rst) to reproduce it locally.


@nice bey


test


https://gist.github.com/TheSin-/ce24a9b551ae3ebd8f4828bae7ea572d

example on how I use it


_Click_ Noice.


@ejgallego I amended to remove this forgotten line.


This line is wrong, but perhaps really the style should be followed where each instruction build is standalone. I have a "rewrite" here that is probably better, and might fix that DebugBreak isn't working, will try later today.


没有对类进行封装，有部分的硬编码，但大多数是好的；
对边界处理有一个问题（生成数独的时候）
代码复用性不错


Sure thanks!


Syntax is all fine just getting a "loading..."


TeamCity Glyssen :: Glyssen pull requests [Build *.*.637.df100909e32f8db9be3166103080691c54d3b203](http://build.palaso.org/viewLog.html?buildId=98318&buildTypeId=Glyssen_GlyssenPullRequests) outcome was **SUCCESS**
Summary: Tests passed: 1728, ignored: 18 Build time: 00:09:07


Shouldn't the gain be calculated like this because it's a 3d wave?
`gain = AL_REFERENCE_DISTANCE * AL_REFERENCE_DISTANCE / (distance * distance)`


Must leave a comment to propose file update...


Created multidev environment [ed8c--backstop#ci-1](https://dashboard.pantheon.io/sites/d1ac2463-9667-4e89-8861-524e01f9c050#ci-1).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1-ed8c--backstop.pantheonsite.io/)


Thanks Brad, I changed the API to use Alpha Vantage a while back since that
was free as well. Any reason to switch over to the one you suggested?

On Sep 27, 2017 10:31 AM, "Brad" <notifications@github.com> wrote:

> Here's a free API you can use: https://iextrading.com/developer/
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/william-reed/GroupMe-Bots-With-Google-Apps-Script/commit/6641e01a3fce2784e3d15b5b6fb82ea6d08a2bcf#commitcomment-24600671>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ACfmj2OVQlg-_VphUUwUtxFHUG9Ijuwlks5smlwhgaJpZM4NuvKB>
> .
>


Hi Stephen,
I have a question, why do we await twice?


和上次提交的代码没有变化


It should.


Yup. Would you like to send a PR for this?


Maybe it was actually firing but better to be safe.


im back to ruin


Not as far as I know, but I didn't search extensively. If you find some reported issues for them, please share. html2canvas falls back to using non foreignobject rendering if the browser doesn't support it (currently only Chrome uses foreignobject).


是我搞错了


Noted.


[R/collect_file_posterior_crown_ages.R:15:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_file_posterior_crown_ages.R#L15) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_file_posterior_crown_ages <- function(filename) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_likelihoods.R:6:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_file_posterior_likelihoods.R#L6) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_file_posterior_likelihoods <- function(filename) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:40:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_file_posterior_nllts.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
        phylogenies <- wiritttes::get_posterior(file = file, sti = sti, ai = ai, pi = pi)$trees
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_alignments_dmid.R:27:29:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_alignments_dmid.R#L27) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    file_index <- 1 + trunc( (row - 1) / 4)
                            ^
```
[R/collect_files_alignments_dmid.R:35:18:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_alignments_dmid.R#L35) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      ai <- 1 + ( (row - 1 ) %% n_alignments)
                 ^
```
[R/collect_files_alignments_dmid.R:35:27:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_alignments_dmid.R#L35) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      ai <- 1 + ( (row - 1 ) %% n_alignments)
                          ^
```
[R/collect_files_esses.R:102:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_esses.R#L102) *style:* **Lines should not be more than 80 characters.**
```r
collect_files_esses_from_log_files <- function(filenames, show_progress = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_esses.R:102:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_esses.R#L102) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_esses_from_log_files <- function(filenames, show_progress = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_esses.R:198:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_esses.R#L198) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/collect_files_operators.R:12:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_operators.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
  filenames = find_paths(c("collect_files_operators.xml.state", "collect_files_operators_empty.xml.state")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_posterior_crown_ages.R:18:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_posterior_crown_ages.R#L18) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_posterior_crown_ages <- function(filenames, verbose = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_posterior_likelihoods.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_files_posterior_likelihoods.R#L17) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_posterior_likelihoods <- function(filenames) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:59:18:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_log_file_info.R#L59) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    line <- text[ grep(pattern = "Used CPU time", x = text) ]
                 ^
```
[R/collect_log_file_info.R:59:60:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/collect_log_file_info.R#L59) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    line <- text[ grep(pattern = "Used CPU time", x = text) ]
                                                           ^
```
[R/create_log_filenames.R:19:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/create_log_filenames.R#L19) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/file_to_lines.R:5:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/file_to_lines.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#'   text <- wiritttea::file_to_lines(filename = wiritttea::find_path("add_alignments_ok.log"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_cas.R:2:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/read_collected_postr_cas.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param filename name of the file with all the collected posteriors' crown ages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_cas.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/read_collected_postr_cas.R#L17) *style:* **Variable and function names should not be longer than 30 characters.**
```r
read_collected_posterior_crown_ages <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_liks.R:2:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/read_collected_postr_liks.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param filename name of the file with all the collected posteriors' likelihoods
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_liks.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/R/read_collected_postr_liks.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
read_collected_posterior_likelihoods <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_esses.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_esses.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
  filenames <- find_paths(c("toy_example_3.RDa", "collect_files_esses_invalid.RDa"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_esses.R:24:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_esses.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
  filenames <- find_paths(c("collect_files_esses_invalid.RDa", "toy_example_3.RDa"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:6:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_operators.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
    filenames = rep(wiritttea::find_path("collect_files_operators.xml.state"), 2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:20:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_operators.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
        c("collect_files_operators.xml.state", "collect_files_operators_empty.xml.state"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:23:4:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_operators.R#L23) *style:* **Commented code should be removed.**
```r
  #write.csv(df_operators, "~/read_collected_operators.csv")
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_crown_ages.R:16:5:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_posterior_crown_ages.R#L16) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_crown_ages.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_likelihoods.R:15:5:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_posterior_likelihoods.R#L15) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_likelihoods.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_nltts.R:16:5:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_files_posterior_nltts.R#L16) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_nltts.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_log_file_info.R:75:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L75) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:76:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L76) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:77:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L77) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:78:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L78) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:79:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L79) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:80:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L80) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:81:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L81) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:82:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L82) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:83:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L83) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:84:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L84) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:85:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L85) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:86:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L86) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:87:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-collect_log_file_info.R#L87) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-create_log_filenames.R:6:68:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-create_log_filenames.R#L6) *style:* **Commas should always have a space after.**
```r
  log_filenames <- wiritttea::create_log_filenames(rda_filename, 2,2,2)
                                                                   ^
```
[tests/testthat/test-create_log_filenames.R:6:70:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-create_log_filenames.R#L6) *style:* **Commas should always have a space after.**
```r
  log_filenames <- wiritttea::create_log_filenames(rda_filename, 2,2,2)
                                                                     ^
```
[tests/testthat/test-file_to_lines.R:4:1:](https://github.com/richelbilderbeek/wiritttea/blob/cca524ea941fc00db54a0b94bebe6ce88d189401/tests/testthat/test-file_to_lines.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
  text <- wiritttea::file_to_lines(filename = wiritttea::find_path("add_alignments_ok.log"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Very interesting thing to see, thank you!


v tychto par funkciach prosim ta dopln visibility resp. access modifier, len pre poriadok ;), nie ze by to bol problem ale malo by to tam asi byt podla mna.


[R/collect_file_posterior_crown_ages.R:15:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_crown_ages.R#L15) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_file_posterior_crown_ages <- function(filename) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_crown_ages.R:31:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_crown_ages.R#L31) *style:* **Lines should not be more than 80 characters.**
```r
        crown_ages <- wiritttes::get_posteriors(file)[[index]][[1]]$estimates$TreeHeight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_likelihoods.R:6:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_likelihoods.R#L6) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_file_posterior_likelihoods <- function(filename) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_likelihoods.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_likelihoods.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
        likelihoods <- wiritttes::get_posteriors(file)[[index]][[1]]$estimates$likelihood
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:21:3:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_nllts.R#L21) *warning:* **local variable ‘parameters’ assigned but may not be used**
```r
  parameters <- file$parameters
  ^~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_nllts.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
  napst <- wiritttes::extract_napst(file) # Number of Alignments Per Species Tree
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_file_posterior_nllts.R:40:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_file_posterior_nllts.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
        phylogenies <- wiritttes::get_posterior(file = file, sti = sti, ai = ai, pi = pi)$trees
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_alignments_dmid.R:27:29:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L27) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    file_index <- 1 + trunc((row - 1)/ 4)
                            ^
```
[R/collect_files_alignments_dmid.R:27:38:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L27) *style:* **Put spaces around all infix operators.**
```r
    file_index <- 1 + trunc((row - 1)/ 4)
                                    ~^
```
[R/collect_files_alignments_dmid.R:35:18:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L35) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      ai <- 1 + ((row - 1 ) %% n_alignments)
                 ^
```
[R/collect_files_alignments_dmid.R:35:26:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_alignments_dmid.R#L35) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      ai <- 1 + ((row - 1 ) %% n_alignments)
                         ^
```
[R/collect_files_esses.R:47:21:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L47) *style:* **Commas should always have a space after.**
```r
    sti = rep(seq(1,2), each = napst * nppa, times = n_files),
                    ^
```
[R/collect_files_esses.R:65:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L65) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/collect_files_esses.R:102:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L102) *style:* **Lines should not be more than 80 characters.**
```r
collect_files_esses_from_log_files <- function(filenames, show_progress = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_esses.R:102:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L102) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_esses_from_log_files <- function(filenames, show_progress = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_esses.R:137:21:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L137) *style:* **Commas should always have a space after.**
```r
    sti = rep(seq(1,2), each = napst * nppa, times = n_files),
                    ^
```
[R/collect_files_esses.R:198:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_esses.R#L198) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/collect_files_operators.R:12:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
  filenames = find_paths(c("collect_files_operators.xml.state", "collect_files_operators_empty.xml.state")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_operators.R:22:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L22) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/collect_files_operators.R:47:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L47) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/collect_files_operators.R:67:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_operators.R#L67) *style:* **Lines should not be more than 80 characters.**
```r
  expected_names <- c("filename", "operator", "p", "accept", "reject", "acceptFC",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_posterior_crown_ages.R:18:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_posterior_crown_ages.R#L18) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_posterior_crown_ages <- function(filenames, verbose = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_files_posterior_likelihoods.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_files_posterior_likelihoods.R#L17) *style:* **Variable and function names should not be longer than 30 characters.**
```r
collect_files_posterior_likelihoods <- function(filenames) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:10:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#'   `alignment` and `no_dnabin` are caused from an unreadable or unmanagable alignment,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:35:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L35) *style:* **Lines should not be more than 80 characters.**
```r
  if (length(grep(pattern = "slurmstepd: error: Exceeded step memory limit at some point", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:37:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "slurmstepd: error: get_exit_code task 0 died by signal", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:39:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L39) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "\\.Call\\(\"rawStreamToDNAbin\", x\\)", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:41:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error in value\\[\\[3L\\]\\]\\(cond\\) : invalid file", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:43:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error: file.exists\\(beast_trees_filename\\) is not TRUE", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:45:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "In ape::read.FASTA\\(fasta_filename\\) :rm: write error: Input/output error", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:47:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error in data.frame\\(sequences, row.names = labels\\)", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:49:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "embedded nul\\(s\\) found in input", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:51:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
  } else if (length(grep(pattern = "Error: class\\(sequences_dnabin\\) == \"DNAbin\" is not TRUE", x = text)) > 0) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:58:18:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L58) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    line <- text[ grep(pattern = "Used CPU time", x = text) ]
                 ^
```
[R/collect_log_file_info.R:58:60:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L58) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    line <- text[ grep(pattern = "Used CPU time", x = text) ]
                                                           ^
```
[R/collect_log_file_info.R:59:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
    t <- stringr::str_extract(line, "[:digit:][:digit:]:[:digit:][:digit:]:[:digit:][:digit:]")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:73:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L73) *style:* **Commented code should be removed.**
```r
  #   line <- text[ grep(pattern = "sys\t", x = text) ]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:74:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L74) *style:* **Commented code should be removed.**
```r
  #   t <- stringr::str_split(str = line, "\t")[[1]][2]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:76:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L76) *style:* **Commented code should be removed.**
```r
  #   n_secs <- lubridate::period_to_seconds(lubridate::ms(t))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_file_info.R:77:7:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_file_info.R#L77) *style:* **Commented code should be removed.**
```r
  #   df$sys_time <- n_secs
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/collect_log_files_info.R:40:14:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/collect_log_files_info.R#L40) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    tryCatch( {
             ^
```
[R/create_log_filenames.R:19:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/create_log_filenames.R#L19) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/file_to_lines.R:5:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/file_to_lines.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#'   text <- wiritttea::file_to_lines(filename = wiritttea::find_path("add_alignments_ok.log"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_cas.R:2:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_cas.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param filename name of the file with all the collected posteriors' crown ages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_cas.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_cas.R#L17) *style:* **Variable and function names should not be longer than 30 characters.**
```r
read_collected_posterior_crown_ages <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_liks.R:2:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_liks.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param filename name of the file with all the collected posteriors' likelihoods
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/read_collected_postr_liks.R:22:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/R/read_collected_postr_liks.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
read_collected_posterior_likelihoods <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_esses.R:17:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_esses.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
  filenames <- find_paths(c("toy_example_3.RDa", "collect_files_esses_invalid.RDa"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_esses.R:24:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_esses.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
  filenames <- find_paths(c("collect_files_esses_invalid.RDa", "toy_example_3.RDa"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:6:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
    filenames = rep(wiritttea::find_path("collect_files_operators.xml.state"), 2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:8:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
  expected_names <- c("filename", "operator", "p", "accept", "reject", "acceptFC",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:20:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
        c("collect_files_operators.xml.state", "collect_files_operators_empty.xml.state"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_operators.R:23:4:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_operators.R#L23) *style:* **Commented code should be removed.**
```r
  #write.csv(df_operators, "~/read_collected_operators.csv")
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_crown_ages.R:16:5:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_posterior_crown_ages.R#L16) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_crown_ages.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_likelihoods.R:15:5:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_posterior_likelihoods.R#L15) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_likelihoods.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_files_posterior_nltts.R:16:5:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_files_posterior_nltts.R#L16) *style:* **Commented code should be removed.**
```r
  # write.csv(df, "~/collect_files_posterior_nltts.csv")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-collect_log_file_info.R:75:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L75) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:76:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L76) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:77:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L77) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:78:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L78) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:79:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L79) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:80:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L80) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:81:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L81) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:82:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L82) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:83:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L83) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:84:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L84) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:85:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L85) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:86:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L86) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-collect_log_file_info.R:87:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-collect_log_file_info.R#L87) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-create_log_filenames.R:6:68:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-create_log_filenames.R#L6) *style:* **Commas should always have a space after.**
```r
  log_filenames <- wiritttea::create_log_filenames(rda_filename, 2,2,2)
                                                                   ^
```
[tests/testthat/test-create_log_filenames.R:6:70:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-create_log_filenames.R#L6) *style:* **Commas should always have a space after.**
```r
  log_filenames <- wiritttea::create_log_filenames(rda_filename, 2,2,2)
                                                                     ^
```
[tests/testthat/test-file_to_lines.R:4:1:](https://github.com/richelbilderbeek/wiritttea/blob/d9f8ce506b338c60b9091bc48d1b1895718cc22d/tests/testthat/test-file_to_lines.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
  text <- wiritttea::file_to_lines(filename = wiritttea::find_path("add_alignments_ok.log"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


so this raises again the cut to 170?


@alexkollert please avoid using `binaryCurAdr` and instead use a procedure `nextFreeBinaryAddress()` that returns the correct address.


Sory I have "bug/futures" and this not work correctly. When folder(projects.refreshRoots element) have ".vscode" folder then not search deeply for ".hg" folder.


1000 COMMITS!!!! I'M PICKLE RICK!!!!!!!!!


This is sad.


@eugeneko Sorry, Because I am get a new job in machine learning, so I have not more time in game developing.


@alexkollert please avoid changing `.gitignore`. use your own version only locally on your machine.


@felfert @nacx *nudge*


相比之前增加了一些常量定义，解决了硬编码的问题；
增加了一些对错误输入的处理；
对类进行了封装。
但是之前的一个边界问题仍然没有解决


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/e588a1d5-6b90-4c6e-ac55-55b3ffb552ee "material2-sample"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/b1bfbf4a-9839-48dd-a767-02866fc2e7c7 "material2-sample") deployed [material2-sample](https://github.com/m67hoff/material2-sample/releases/tag/deploy-ibm-yp-eu-de-mhoff-dev-20170927-144943 "deploy-ibm-yp-eu-de-mhoff-dev-20170927-144943") to [dev](https://console.bluemix.net/apps/282c7faf-ecec-489d-860b-264d0df6bd63?env_id=ibm:yp:eu-de "ibm:yp:eu-de:mhoff:dev"), including this commit


@alexkollert I don't understand why you are doing this.


感觉这里的6和其他地方的6可以替换成宏定义或者全局变量，还有数独的size也可以这样做。


Ist der Mai der 6. Monat im Jahr? (:


constructor with name and age as parameter (name should be optional [default "Unknown"])


Der Befehl ROUND gehört in die erste Zeile zu SELECT.


done


@aster2013 So, there is no reason except personal? I was afraid that new binding is non-viable for some reason.
Could you give some summary about this refactoring?
Estimated completeness. Breaking Lua API changes. Other important things that are needed to continute migration.


@kevva I think `"optipng-bin": "^4.0.0"` from this commit fixes the issue.


ddd


I am out on vacation for next 10 days. Can you create a PR and have Ioannis
review it?

On Wed, Sep 27, 2017 at 4:42 AM, Dennis <notifications@github.com> wrote:

> Same here with Alpine
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/Netflix/dynomite/commit/1d19e42ab33a697eef1c5fd271e37ef782099fd5#commitcomment-24596976>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ALle58DqOqK6E5dpAM9kGzjGeyXoT21cks5smjSigaJpZM4MkybU>
> .
>


Это параметры метода класса validate, т.е. это то же самое, что и вызывать метод так: `validate(:number, :presence)`.
И да, эти значения потом сохраняются в хеше класса.

Да, к attr_accessor это отношения не имеет


d


Flow's goal is to express the types of the underlying operation, which do indeed allow numbers to be passed, so this change is probably here to stay.

That it isn't a good idea to pass numbers into `parseInt` would be a great candidate for a flow-lint rule though!


В скобках мы должны получить имя переменной, а не значение. А вот метод `instance_variable_get` как раз вернет нам значение переменной по его имени. Например, если в переменной  `@number` записано число 5, то нам вызов `instance_variable_get("@number")` вернет 5. Видишь, мы просто передаем **имя** переменной как строку?


Hard to believe that. `optipng-bin@4.0.0` only contains code style updates.


It was supposed to always return `true`


Задано значение может быть как угодно, не обязательно в конструкторе. Важно, что когда мы вызываем метод validate!, то проверяем текущее значение этой переменной, то, которое задано сейчас. Оно затем может поменяться, и вызвав снова метод validate! мы проверим уже новое значение на валидность


@ras0219-msft
>  Switch USE_UNICODE to ON to match upstream's build.bat.

The `build.bat` was added to nanodbc (lexicalunit/nanodbc@a90436549caf4c82003e48ea58b17e282f71835b)
) as a template build script for users convenience, to copy it and modify. It is not to present the recommended way of how to build nanodbc.

@sdcb
> 1. USE_UNICODE defines NANODBC_USE_UNICODE in compile time (...)

Yes, this sets configuration of the generated binary. Like, for example, ODBC driver for MySQL, there are two builds: ANSI and UNICODE. Ideally, if both variants are available from the package. As Vcpkg noob, I'm not sure that is feasible.

> 2. USE_UNICODE does not use wstring/wchar_t that Windows user expects

This annoyance has been fixed (lexicalunit/nanodbc@d37d739b498eeb277d9f65d757c450473e64400a). The fix will be available in next release (ie. any following the current  v2.12.4).


1-й аргумент - это название атрибута, чтобы потом в сообщение об ошибке его можно было вставить в методах-валидаторах


Thanks


This gitRef doesn't seem to exist?


Created multidev environment [ed8c--backstop#pr-backstop](https://dashboard.pantheon.io/sites/d1ac2463-9667-4e89-8861-524e01f9c050#pr-backstop).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-backstop-ed8c--backstop.pantheonsite.io/)