[R/camino_adcfit.R:10:15:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L10) *style:* **Use <-, not =, for assignment.**
```r
camino_adcfit = function(infile,
              ^
```
[R/camino_adcfit.R:17:18:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L17) *style:* **Use <-, not =, for assignment.**
```r
  outputdatatype = match.arg(outputdatatype)
                 ^
```
[R/camino_adcfit.R:20:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L20) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = paste0(".B", outputdatatype))
            ^
```
[R/camino_adcfit.R:22:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L22) *style:* **Use <-, not =, for assignment.**
```r
  opts = c(infile, scheme)
       ^
```
[R/camino_adcfit.R:23:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L23) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste0(opts, collapse = " ")
       ^
```
[R/camino_adcfit.R:25:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L25) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("adcfit")
      ^
```
[R/camino_adcfit.R:26:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L26) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts, " > ", outfile)
      ^
```
[R/camino_adcfit.R:31:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L31) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_adcfit.R:31:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_adcfit.R#L31) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_cmd.R:9:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_cmd.R#L9) *style:* **Use <-, not =, for assignment.**
```r
camino_cmd = function(funcname){
           ^
```
[R/camino_compute_img.R:12:20:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L12) *style:* **Use <-, not =, for assignment.**
```r
camino_compute_img = function(
                   ^
```
[R/camino_compute_img.R:17:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L17) *style:* **Use <-, not =, for assignment.**
```r
  tmp = camino_compute(
      ^
```
[R/camino_compute_img.R:20:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L20) *style:* **Use <-, not =, for assignment.**
```r
  img = camino_voxel2image(
      ^
```
[R/camino_compute_img.R:23:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L23) *style:* **Use <-, not =, for assignment.**
```r
  img = neurobase::readnii(img)
      ^
```
[R/camino_compute_img.R:35:15:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L35) *style:* **Use <-, not =, for assignment.**
```r
camino_fa_img = function(
              ^
```
[R/camino_compute_img.R:52:15:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L52) *style:* **Use <-, not =, for assignment.**
```r
camino_md_img = function(
              ^
```
[R/camino_compute_img.R:70:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute_img.R#L70) *style:* **Use <-, not =, for assignment.**
```r
camino_trd_img = function(
               ^
```
[R/camino_compute.R:13:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L13) *style:* **Use <-, not =, for assignment.**
```r
camino_compute = function(
               ^
```
[R/camino_compute.R:23:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L23) *style:* **Use <-, not =, for assignment.**
```r
  cmd = match.arg(cmd)
      ^
```
[R/camino_compute.R:24:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L24) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_compute.R:27:19:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L27) *style:* **Use <-, not =, for assignment.**
```r
    inputdatatype = match.arg(inputdatatype,
                  ^
```
[R/camino_compute.R:31:18:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L31) *style:* **Use <-, not =, for assignment.**
```r
  outputdatatype = match.arg(outputdatatype)
                 ^
```
[R/camino_compute.R:33:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L33) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = paste0(".B", outputdatatype))
            ^
```
[R/camino_compute.R:35:14:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L35) *style:* **Use <-, not =, for assignment.**
```r
  inputmodel = match.arg(inputmodel)
             ^
```
[R/camino_compute.R:37:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L37) *style:* **Use <-, not =, for assignment.**
```r
  opts = c( "-inputmodel" = inputmodel,
       ^
```
[R/camino_compute.R:37:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L37) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  opts = c( "-inputmodel" = inputmodel,
           ^
```
[R/camino_compute.R:41:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L41) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(names(opts), opts, collapse = " ")
       ^
```
[R/camino_compute.R:42:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L42) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste0(opts, " > ", shQuote(outfile))
       ^
```
[R/camino_compute.R:44:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L44) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd(cmd)
      ^
```
[R/camino_compute.R:45:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L45) *style:* **Use <-, not =, for assignment.**
```r
  start = paste0("cat ", shQuote(infile), " | ")
        ^
```
[R/camino_compute.R:46:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L46) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(start,  cmd, opts)
      ^
```
[R/camino_compute.R:50:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L50) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_compute.R:50:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L50) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_compute.R:60:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L60) *style:* **Use <-, not =, for assignment.**
```r
camino_fa = function(...) {
          ^
```
[R/camino_compute.R:69:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L69) *style:* **Use <-, not =, for assignment.**
```r
camino_md = function(...) {
          ^
```
[R/camino_compute.R:79:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_compute.R#L79) *style:* **Use <-, not =, for assignment.**
```r
camino_trd = function(...) {
           ^
```
[R/camino_dt2nii.R:6:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
#' @param outputroot Output file root. If there is one component, or output is to a vector,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dt2nii.R:7:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' the output image is called root.ext, otherwise output is numbered by component.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dt2nii.R:11:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
#' @param maxcomponents Maximum tensor components, for use with input model "multitensor".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dt2nii.R:12:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
#' @param gzip Set gzip compression for the output image, if supported by the image format.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dt2nii.R:15:15:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L15) *style:* **Use <-, not =, for assignment.**
```r
camino_dt2nii = function(infile,
              ^
```
[R/camino_dt2nii.R:17:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
                         inputmodel = c("dt", "twotensor", "threetensor", "multitensor"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dt2nii.R:25:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L25) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_dt2nii.R:26:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L26) *style:* **Use <-, not =, for assignment.**
```r
  header = checkimg(header)
         ^
```
[R/camino_dt2nii.R:27:14:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L27) *style:* **Use <-, not =, for assignment.**
```r
  inputmodel = match.arg(inputmodel)
             ^
```
[R/camino_dt2nii.R:29:19:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L29) *style:* **Use <-, not =, for assignment.**
```r
    maxcomponents = NULL
                  ^
```
[R/camino_dt2nii.R:44:20:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L44) *style:* **Use <-, not =, for assignment.**
```r
    outputdatatype = match.arg(outputdatatype,
                   ^
```
[R/camino_dt2nii.R:49:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L49) *style:* **Use <-, not =, for assignment.**
```r
    outputroot = tempfile(fileext = "_")
               ^
```
[R/camino_dt2nii.R:52:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L52) *style:* **Use <-, not =, for assignment.**
```r
  opts = c( "-inputfile" = infile,
       ^
```
[R/camino_dt2nii.R:52:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  opts = c( "-inputfile" = infile,
           ^
```
[R/camino_dt2nii.R:59:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L59) *style:* **Use <-, not =, for assignment.**
```r
  ext = ".nii"
      ^
```
[R/camino_dt2nii.R:61:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L61) *style:* **Use <-, not =, for assignment.**
```r
    opts = c(opts, "-gzip" = "")
         ^
```
[R/camino_dt2nii.R:62:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L62) *style:* **Use <-, not =, for assignment.**
```r
    ext = ".nii.gz"
        ^
```
[R/camino_dt2nii.R:64:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L64) *style:* **Use <-, not =, for assignment.**
```r
  opts = collapse_opts(opts)
       ^
```
[R/camino_dt2nii.R:66:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L66) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("dt2nii")
      ^
```
[R/camino_dt2nii.R:67:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L67) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_dt2nii.R:71:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L71) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_dt2nii.R:71:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L71) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_dt2nii.R:76:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L76) *style:* **Use <-, not =, for assignment.**
```r
  out_suff = c("exitcode", "lns0")
           ^
```
[R/camino_dt2nii.R:79:14:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L79) *style:* **Use <-, not =, for assignment.**
```r
    out_suff = c(out_suff, "dt")
             ^
```
[R/camino_dt2nii.R:81:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L81) *style:* **Use <-, not =, for assignment.**
```r
    n_comp = switch(inputmodel,
           ^
```
[R/camino_dt2nii.R:85:15:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L85) *style:* **Use <-, not =, for assignment.**
```r
    add_suffs = c(sapply(seq_along(n_comp), function(x){
              ^
```
[R/camino_dt2nii.R:88:14:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L88) *style:* **Use <-, not =, for assignment.**
```r
    out_suff = c(out_suff, add_suffs)
             ^
```
[R/camino_dt2nii.R:90:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dt2nii.R#L90) *style:* **Use <-, not =, for assignment.**
```r
  outfiles = paste0(outputroot, out_suff, ext)
           ^
```
[R/camino_dteig.R:5:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param outfile Output filename.  If \code{NULL}, a temporary filename will be make
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dteig.R:10:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @param maxcomponents Maximum tensor components, for use with input model "multitensor".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dteig.R:13:14:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L13) *style:* **Use <-, not =, for assignment.**
```r
camino_dteig = function(infile,
             ^
```
[R/camino_dteig.R:15:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
                        inputmodel = c("dt", "twotensor", "threetensor", "multitensor"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_dteig.R:22:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L22) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_dteig.R:23:14:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L23) *style:* **Use <-, not =, for assignment.**
```r
  inputmodel = match.arg(inputmodel)
             ^
```
[R/camino_dteig.R:29:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L29) *style:* **Use <-, not =, for assignment.**
```r
    inputmodel = "multitensor"
               ^
```
[R/camino_dteig.R:31:21:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L31) *style:* **Use <-, not =, for assignment.**
```r
      maxcomponents = 2
                    ^
```
[R/camino_dteig.R:35:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L35) *style:* **Use <-, not =, for assignment.**
```r
    inputmodel = "multitensor"
               ^
```
[R/camino_dteig.R:37:21:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L37) *style:* **Use <-, not =, for assignment.**
```r
      maxcomponents = 3
                    ^
```
[R/camino_dteig.R:54:18:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L54) *style:* **Use <-, not =, for assignment.**
```r
  outputdatatype = match.arg(outputdatatype)
                 ^
```
[R/camino_dteig.R:56:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L56) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = paste0(".B", outputdatatype))
            ^
```
[R/camino_dteig.R:58:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L58) *style:* **Use <-, not =, for assignment.**
```r
  outfile = shQuote(outfile)
          ^
```
[R/camino_dteig.R:60:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L60) *style:* **Use <-, not =, for assignment.**
```r
  opts = c( "-inputfile" = infile,
       ^
```
[R/camino_dteig.R:60:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L60) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  opts = c( "-inputfile" = infile,
           ^
```
[R/camino_dteig.R:65:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L65) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(names(opts), opts, collapse = " ")
       ^
```
[R/camino_dteig.R:67:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L67) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("dteig")
      ^
```
[R/camino_dteig.R:68:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L68) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts, " > ", outfile)
      ^
```
[R/camino_dteig.R:72:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L72) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_dteig.R:72:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L72) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_dteig.R:79:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L79) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_dteig.R:80:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_dteig.R#L80) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_fsl2scheme.R:8:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
#' @param bscale Scaling  factor  to  convert  the b-values into different units.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_fsl2scheme.R:17:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
#' @param zerobval   Set an effective zero b-value, input b-values less than or equal
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_fsl2scheme.R:20:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
#' measurement by the mean b=0 measurement. This  value is tested after any applicable scaling is applied to
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_fsl2scheme.R:22:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
#' @param numscans Output all measurements number times, used when combining multiple  scans  from the same imaging session. The default behaviour
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_fsl2scheme.R:34:19:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L34) *style:* **Use <-, not =, for assignment.**
```r
camino_fsl2scheme = function(
                  ^
```
[R/camino_fsl2scheme.R:52:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L52) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = ".scheme")
            ^
```
[R/camino_fsl2scheme.R:56:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L56) *style:* **Use <-, not =, for assignment.**
```r
    tfile = tempfile(fileext = ".txt")
          ^
```
[R/camino_fsl2scheme.R:57:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L57) *style:* **Use <-, not =, for assignment.**
```r
    bvecs = apply(bvecs, 1, paste, collapse = " ")
          ^
```
[R/camino_fsl2scheme.R:59:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L59) *style:* **Use <-, not =, for assignment.**
```r
    bvecs = tfile
          ^
```
[R/camino_fsl2scheme.R:63:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L63) *style:* **Use <-, not =, for assignment.**
```r
    tfile = tempfile(fileext = ".txt")
          ^
```
[R/camino_fsl2scheme.R:64:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L64) *style:* **Use <-, not =, for assignment.**
```r
    bvals = as.character(bvals)
          ^
```
[R/camino_fsl2scheme.R:66:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L66) *style:* **Use <-, not =, for assignment.**
```r
    bvals = tfile
          ^
```
[R/camino_fsl2scheme.R:69:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L69) *style:* **Use <-, not =, for assignment.**
```r
  names(bvecs) = names(bvals) = NULL
               ^
```
[R/camino_fsl2scheme.R:69:31:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L69) *style:* **Use <-, not =, for assignment.**
```r
  names(bvecs) = names(bvals) = NULL
                              ^
```
[R/camino_fsl2scheme.R:70:24:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L70) *style:* **Use <-, not =, for assignment.**
```r
  names(diffusiontime) = names(bscale) = NULL
                       ^
```
[R/camino_fsl2scheme.R:70:40:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L70) *style:* **Use <-, not =, for assignment.**
```r
  names(diffusiontime) = names(bscale) = NULL
                                       ^
```
[R/camino_fsl2scheme.R:71:19:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L71) *style:* **Use <-, not =, for assignment.**
```r
  names(zerobval) = names(numscans) = NULL
                  ^
```
[R/camino_fsl2scheme.R:71:37:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L71) *style:* **Use <-, not =, for assignment.**
```r
  names(zerobval) = names(numscans) = NULL
                                    ^
```
[R/camino_fsl2scheme.R:72:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L72) *style:* **Use <-, not =, for assignment.**
```r
  names(flipx) = names(usegradmod) = NULL
               ^
```
[R/camino_fsl2scheme.R:72:36:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L72) *style:* **Use <-, not =, for assignment.**
```r
  names(flipx) = names(usegradmod) = NULL
                                   ^
```
[R/camino_fsl2scheme.R:73:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L73) *style:* **Use <-, not =, for assignment.**
```r
  names(flipy) = names(interleave) = NULL
               ^
```
[R/camino_fsl2scheme.R:73:36:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L73) *style:* **Use <-, not =, for assignment.**
```r
  names(flipy) = names(interleave) = NULL
                                   ^
```
[R/camino_fsl2scheme.R:74:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L74) *style:* **Use <-, not =, for assignment.**
```r
  names(flipz) = NULL
               ^
```
[R/camino_fsl2scheme.R:76:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L76) *style:* **Use <-, not =, for assignment.**
```r
  opts = c(
       ^
```
[R/camino_fsl2scheme.R:86:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L86) *style:* **Use <-, not =, for assignment.**
```r
  log_opts = c("-flipx" = flipx,
           ^
```
[R/camino_fsl2scheme.R:91:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L91) *style:* **Use <-, not =, for assignment.**
```r
  log_opts = collapse_log_opts(log_opts)
           ^
```
[R/camino_fsl2scheme.R:92:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L92) *style:* **Use <-, not =, for assignment.**
```r
  opts = collapse_opts(opts)
       ^
```
[R/camino_fsl2scheme.R:93:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L93) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(opts, log_opts)
       ^
```
[R/camino_fsl2scheme.R:95:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L95) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("fsl2scheme")
      ^
```
[R/camino_fsl2scheme.R:96:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L96) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts, " > ", outfile)
      ^
```
[R/camino_fsl2scheme.R:101:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L101) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_fsl2scheme.R:101:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_fsl2scheme.R#L101) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_help.R:10:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L10) *style:* **Use <-, not =, for assignment.**
```r
camino_help = function(funcname, ...){
            ^
```
[R/camino_help.R:11:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L11) *style:* **Use <-, not =, for assignment.**
```r
  man_fol = system.file(file.path("camino", "man"), package = "rcamino")
          ^
```
[R/camino_help.R:12:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L12) *style:* **Use <-, not =, for assignment.**
```r
  cmd = sprintf("man -M %s %s", man_fol, funcname)
      ^
```
[R/camino_help.R:26:22:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L26) *style:* **Use <-, not =, for assignment.**
```r
read_camino_helpfile = function(funcname){
                     ^
```
[R/camino_help.R:27:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L27) *style:* **Use <-, not =, for assignment.**
```r
  man_fol = system.file(file.path("camino", "man", "man1"),
          ^
```
[R/camino_help.R:29:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L29) *style:* **Use <-, not =, for assignment.**
```r
  funcname = paste0(funcname, ".1")
           ^
```
[R/camino_help.R:30:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L30) *style:* **Use <-, not =, for assignment.**
```r
  file = file.path(man_fol, funcname)
       ^
```
[R/camino_help.R:32:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L32) *style:* **Use <-, not =, for assignment.**
```r
    res = readLines(file)
        ^
```
[R/camino_help.R:34:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_help.R#L34) *style:* **Use <-, not =, for assignment.**
```r
    res = NULL
        ^
```
[R/camino_image2voxel.R:10:20:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L10) *style:* **Use <-, not =, for assignment.**
```r
camino_image2voxel = function(infile,
                   ^
```
[R/camino_image2voxel.R:16:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L16) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_image2voxel.R:17:18:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L17) *style:* **Use <-, not =, for assignment.**
```r
  outputdatatype = match.arg(outputdatatype)
                 ^
```
[R/camino_image2voxel.R:20:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L20) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = paste0(".B", outputdatatype))
            ^
```
[R/camino_image2voxel.R:23:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L23) *style:* **Use <-, not =, for assignment.**
```r
  opts = c("-inputfile" = shQuote(infile),
       ^
```
[R/camino_image2voxel.R:26:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L26) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(names(opts), opts, collapse = " ")
       ^
```
[R/camino_image2voxel.R:28:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L28) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("image2voxel")
      ^
```
[R/camino_image2voxel.R:29:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L29) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_image2voxel.R:33:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L33) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_image2voxel.R:33:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_image2voxel.R#L33) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_modelfit.R:12:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
#'  Each value is zero in background voxels apart from the exit code which is -1.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:13:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
#' @param model Type of model used: 1-tensor: dt (linear diffusion tensor, default),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:21:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L21) *style:* **Lines should not be more than 80 characters.**
```r
#' @param outputdatatype Output data type, ignored if \code{outfile} is specified.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:23:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L23) *style:* **Lines should not be more than 80 characters.**
```r
#' @param outliermap Specifies the name of the file to contain the outlier map generated by the RESTORE algorithm. See restore(1).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:24:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
#' @param noisemap Specifies the name of the file to contain the estimated noise variance on the diffusion-weighted signal, generated by a weighted tensor fit. The data type of this file is big-endian double.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:25:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L25) *style:* **Lines should not be more than 80 characters.**
```r
#' @param residualmap Specifies the name of the file to contain the weighted residual
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:27:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L27) *style:* **Lines should not be more than 80 characters.**
```r
#' per measurement, in voxel order. The data type of this file is big-endian double.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:43:17:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L43) *style:* **Use <-, not =, for assignment.**
```r
camino_modelfit = function(infile,
                ^
```
[R/camino_modelfit.R:47:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
                           model = c("dt", "ldt", "nldt_pos", "nldt", "ldt_wtd"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:52:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
                           outputdatatype = c("double", "float", "char", "short",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_modelfit.R:65:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L65) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_modelfit.R:66:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L66) *style:* **Use <-, not =, for assignment.**
```r
  mask = checkimg(mask)
       ^
```
[R/camino_modelfit.R:67:17:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L67) *style:* **Use <-, not =, for assignment.**
```r
  checkimg_null = function(x){
                ^
```
[R/camino_modelfit.R:74:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L74) *style:* **Use <-, not =, for assignment.**
```r
  gradadj = checkimg_null(gradadj)
          ^
```
[R/camino_modelfit.R:76:17:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L76) *style:* **Use <-, not =, for assignment.**
```r
  inputdatatype = match.arg(inputdatatype)
                ^
```
[R/camino_modelfit.R:77:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L77) *style:* **Use <-, not =, for assignment.**
```r
  maskdatatype = match.arg(maskdatatype)
               ^
```
[R/camino_modelfit.R:78:18:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L78) *style:* **Use <-, not =, for assignment.**
```r
  outputdatatype = match.arg(outputdatatype)
                 ^
```
[R/camino_modelfit.R:79:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L79) *style:* **Use <-, not =, for assignment.**
```r
  model = match.arg(model)
        ^
```
[R/camino_modelfit.R:81:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L81) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = paste0(".B", outputdatatype))
            ^
```
[R/camino_modelfit.R:84:17:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L84) *style:* **Use <-, not =, for assignment.**
```r
  names(scheme) = NULL
                ^
```
[R/camino_modelfit.R:85:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L85) *style:* **Use <-, not =, for assignment.**
```r
  opts = c("-inputfile" = shQuote(infile),
       ^
```
[R/camino_modelfit.R:101:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L101) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(names(opts), opts, collapse = " ")
       ^
```
[R/camino_modelfit.R:103:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L103) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("modelfit")
      ^
```
[R/camino_modelfit.R:104:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L104) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_modelfit.R:108:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L108) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_modelfit.R:108:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L108) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_modelfit.R:111:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_modelfit.R#L111) *style:* **Lines should not be more than 80 characters.**
```r
# modelfit -inputfile dwi.Bfloat -schemefile 4Ddwi_b1000_bvector.scheme -model ldt -bgmask brain_mask.nii.gz \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_pointset2scheme.R:9:24:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L9) *style:* **Use <-, not =, for assignment.**
```r
camino_pointset2scheme = function(
                       ^
```
[R/camino_pointset2scheme.R:14:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L14) *style:* **Use <-, not =, for assignment.**
```r
  scipen = getOption("scipen")
         ^
```
[R/camino_pointset2scheme.R:20:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L20) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("pointset2scheme")
      ^
```
[R/camino_pointset2scheme.R:22:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L22) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = ".scheme")
            ^
```
[R/camino_pointset2scheme.R:24:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L24) *style:* **Use <-, not =, for assignment.**
```r
  infile = path.expand(infile)
         ^
```
[R/camino_pointset2scheme.R:25:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L25) *style:* **Use <-, not =, for assignment.**
```r
  opts = c("-inputfile" = shQuote(infile),
       ^
```
[R/camino_pointset2scheme.R:28:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L28) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(names(opts), opts, collapse = " ")
       ^
```
[R/camino_pointset2scheme.R:30:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L30) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_pointset2scheme.R:34:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L34) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_pointset2scheme.R:34:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_pointset2scheme.R#L34) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_set_heap.R:9:17:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L9) *style:* **Use <-, not =, for assignment.**
```r
camino_set_heap = function(heap_size = 4000){
                ^
```
[R/camino_set_heap.R:10:5:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L10) *style:* **Commented code should be removed.**
```r
  # options("CAMINO_HEAP_SIZE" = heap_size)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_set_heap.R:12:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L12) *style:* **Use <-, not =, for assignment.**
```r
  java_max = paste0("-Xmx", heap_size, "m")
           ^
```
[R/camino_set_heap.R:13:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L13) *style:* **Use <-, not =, for assignment.**
```r
  j_opts = Sys.getenv("_JAVA_OPTIONS")
         ^
```
[R/camino_set_heap.R:14:6:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L14) *style:* **Use <-, not =, for assignment.**
```r
  ss = strsplit(j_opts, " ")[[1]]
     ^
```
[R/camino_set_heap.R:15:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L15) *style:* **Use <-, not =, for assignment.**
```r
  ind = grepl("-Xmx", ss)
      ^
```
[R/camino_set_heap.R:17:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L17) *style:* **Use <-, not =, for assignment.**
```r
    ss[ind] = java_max
            ^
```
[R/camino_set_heap.R:19:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L19) *style:* **Use <-, not =, for assignment.**
```r
    ss = c(ss, java_max)
       ^
```
[R/camino_set_heap.R:21:6:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L21) *style:* **Use <-, not =, for assignment.**
```r
  ss = paste(ss, collapse = " ")
     ^
```
[R/camino_set_heap.R:34:17:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L34) *style:* **Use <-, not =, for assignment.**
```r
camino_get_heap = function(heap_size = 4000){
                ^
```
[R/camino_set_heap.R:35:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L35) *style:* **Use <-, not =, for assignment.**
```r
  heap = Sys.getenv("CAMINO_HEAP_SIZE")
       ^
```
[R/camino_set_heap.R:37:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L37) *style:* **Use <-, not =, for assignment.**
```r
    heap = heap_size
         ^
```
[R/camino_set_heap.R:41:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L41) *style:* **Use <-, not =, for assignment.**
```r
    heap = heap_size
         ^
```
[R/camino_set_heap.R:44:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L44) *style:* **Use <-, not =, for assignment.**
```r
  heap = as.numeric(heap)
       ^
```
[R/camino_set_heap.R:46:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L46) *style:* **Use <-, not =, for assignment.**
```r
    heap = heap_size
         ^
```
[R/camino_set_heap.R:51:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L51) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_set_heap.R:52:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L52) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_set_heap.R:53:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L53) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_set_heap.R:54:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_set_heap.R#L54) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_vcthreshselect.R:13:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
#' @param ftest Specifies  the  F-test thresholds for adopting higher order models. A threshold must be provided for every order between 0  and
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_vcthreshselect.R:19:23:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L19) *style:* **Use <-, not =, for assignment.**
```r
camino_vcthreshselect = function(infile,
                      ^
```
[R/camino_vcthreshselect.R:27:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L27) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_vcthreshselect.R:29:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L29) *style:* **Use <-, not =, for assignment.**
```r
  scipen = getOption("scipen")
         ^
```
[R/camino_vcthreshselect.R:36:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L36) *style:* **Use <-, not =, for assignment.**
```r
    ftest = paste0(ftest, collapse = " ")
          ^
```
[R/camino_vcthreshselect.R:39:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L39) *style:* **Use <-, not =, for assignment.**
```r
  datadims = paste0(datadims, collapse = " ")
           ^
```
[R/camino_vcthreshselect.R:42:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L42) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !(order %% 2 == 0) ) {
        ^
```
[R/camino_vcthreshselect.R:42:28:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L42) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !(order %% 2 == 0) ) {
                           ^
```
[R/camino_vcthreshselect.R:46:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L46) *style:* **Use <-, not =, for assignment.**
```r
  opts = c("-inputfile" = infile,
       ^
```
[R/camino_vcthreshselect.R:53:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L53) *style:* **Use <-, not =, for assignment.**
```r
  opts = collapse_opts(opts)
       ^
```
[R/camino_vcthreshselect.R:55:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L55) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("vcthreshselect")
      ^
```
[R/camino_vcthreshselect.R:56:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L56) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_vcthreshselect.R:60:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L60) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_vcthreshselect.R:65:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_vcthreshselect.R#L65) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/camino_voxel2image.R:5:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param outputroot Output file root. If there is one component, or output is to a vector,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_voxel2image.R:6:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
#' the output image is called root.ext, otherwise output is numbered by component.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_voxel2image.R:9:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L9) *style:* **Lines should not be more than 80 characters.**
```r
#' @param components The number of components in the input data. The default is 1.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_voxel2image.R:10:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @param gzip Set gzip compression for the output image, if supported by the image format.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_voxel2image.R:17:20:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L17) *style:* **Use <-, not =, for assignment.**
```r
camino_voxel2image = function(infile,
                   ^
```
[R/camino_voxel2image.R:28:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L28) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_voxel2image.R:29:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L29) *style:* **Use <-, not =, for assignment.**
```r
  header = checkimg(header)
         ^
```
[R/camino_voxel2image.R:35:19:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L35) *style:* **Use <-, not =, for assignment.**
```r
    inputdatatype = match.arg(inputdatatype,
                  ^
```
[R/camino_voxel2image.R:40:20:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L40) *style:* **Use <-, not =, for assignment.**
```r
    outputdatatype = match.arg(outputdatatype,
                   ^
```
[R/camino_voxel2image.R:45:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L45) *style:* **Use <-, not =, for assignment.**
```r
    outputroot = tempfile(fileext = "_")
               ^
```
[R/camino_voxel2image.R:48:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L48) *style:* **Use <-, not =, for assignment.**
```r
  opts = c( "-inputfile" = infile,
       ^
```
[R/camino_voxel2image.R:48:12:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L48) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  opts = c( "-inputfile" = infile,
           ^
```
[R/camino_voxel2image.R:55:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L55) *style:* **Use <-, not =, for assignment.**
```r
  ext = ".nii"
      ^
```
[R/camino_voxel2image.R:57:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L57) *style:* **Use <-, not =, for assignment.**
```r
    opts = c(opts, "-gzip" = "")
         ^
```
[R/camino_voxel2image.R:58:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L58) *style:* **Use <-, not =, for assignment.**
```r
    ext = ".nii.gz"
        ^
```
[R/camino_voxel2image.R:61:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L61) *style:* **Use <-, not =, for assignment.**
```r
    opts = c(opts, "-outputvector" = "")
         ^
```
[R/camino_voxel2image.R:63:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L63) *style:* **Use <-, not =, for assignment.**
```r
  opts = paste(names(opts), opts, collapse = " ")
       ^
```
[R/camino_voxel2image.R:65:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L65) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("voxel2image")
      ^
```
[R/camino_voxel2image.R:66:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L66) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_voxel2image.R:70:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L70) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_voxel2image.R:70:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L70) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_voxel2image.R:72:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L72) *style:* **Use <-, not =, for assignment.**
```r
    outfile = paste0(outputroot, ext)
            ^
```
[R/camino_voxel2image.R:74:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxel2image.R#L74) *style:* **Use <-, not =, for assignment.**
```r
    outfile = paste0(outputroot, seq(components), ext)
            ^
```
[R/camino_voxelclassify.R:18:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
#' @param ftest Specifies  the  F-test thresholds for adopting higher order models. A threshold must be provided for every order between 0  and
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/camino_voxelclassify.R:25:22:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L25) *style:* **Use <-, not =, for assignment.**
```r
camino_voxelclassify = function(infile,
                     ^
```
[R/camino_voxelclassify.R:35:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L35) *style:* **Use <-, not =, for assignment.**
```r
  infile = checkimg(infile)
         ^
```
[R/camino_voxelclassify.R:36:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L36) *style:* **Use <-, not =, for assignment.**
```r
  scipen = getOption("scipen")
         ^
```
[R/camino_voxelclassify.R:44:10:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L44) *style:* **Use <-, not =, for assignment.**
```r
    mask = checkimg(mask)
         ^
```
[R/camino_voxelclassify.R:47:16:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L47) *style:* **Use <-, not =, for assignment.**
```r
      bgthresh = NULL
               ^
```
[R/camino_voxelclassify.R:52:20:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L52) *style:* **Use <-, not =, for assignment.**
```r
    outputdatatype = "double"
                   ^
```
[R/camino_voxelclassify.R:54:22:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L54) *style:* **Use <-, not =, for assignment.**
```r
      outputdatatype = "int"
                     ^
```
[R/camino_voxelclassify.R:56:13:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L56) *style:* **Use <-, not =, for assignment.**
```r
    outfile = tempfile(fileext = paste0(".B", outputdatatype))
            ^
```
[R/camino_voxelclassify.R:60:11:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L60) *style:* **Use <-, not =, for assignment.**
```r
    ftest = paste0(ftest, collapse = " ")
          ^
```
[R/camino_voxelclassify.R:63:9:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L63) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !(order %% 2 == 0) ) {
        ^
```
[R/camino_voxelclassify.R:63:28:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L63) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !(order %% 2 == 0) ) {
                           ^
```
[R/camino_voxelclassify.R:67:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L67) *style:* **Use <-, not =, for assignment.**
```r
  opts = c("-inputfile" = infile,
       ^
```
[R/camino_voxelclassify.R:75:8:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L75) *style:* **Use <-, not =, for assignment.**
```r
  opts = collapse_opts(opts)
       ^
```
[R/camino_voxelclassify.R:77:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L77) *style:* **Use <-, not =, for assignment.**
```r
  cmd = camino_cmd("voxelclassify")
      ^
```
[R/camino_voxelclassify.R:78:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L78) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste(cmd, opts)
      ^
```
[R/camino_voxelclassify.R:82:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L82) *style:* **Use <-, not =, for assignment.**
```r
  cmd = paste0(cmd, " > ", outfile)
      ^
```
[R/camino_voxelclassify.R:83:3:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L83) *warning:* **local variable ‘res’ assigned but may not be used**
```r
  res = system(cmd)
  ^~~
```
[R/camino_voxelclassify.R:83:7:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L83) *style:* **Use <-, not =, for assignment.**
```r
  res = system(cmd)
      ^
```
[R/camino_voxelclassify.R:88:1:](https://github.com/muschellij2/rcamino/blob/bbef4474b6a35e1ce72b8ddfaff6e8fbc1689ead/R/camino_voxelclassify.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
# [-bgthresh <value>] [-csfthresh <maxA0>] [-order <maxOrder>]  [-ftest <thresholds>]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


asfsadjsadfjfsadj


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/4209b58b-30d7-48a6-865e-6774412eec30 "cloud-native-toolchain-tutorial-20170917124016098"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/2da42e49-26c2-44d9-9cb3-5ccb1da74d46 "sample-cloud-native-toolchain-tutorial-20170917124016098") deployed [sample-cloud-native-toolchain-tutorial-20170917124016098](https://github.com/ngagejason/sample-cloud-native-toolchain-tutorial-20170917124016098/releases/tag/deploy-ibm-yp-us-south-ageejas1-test-20170920-181205 "deploy-ibm-yp-us-south-ageejas1-test-20170920-181205") to [test](https://console.bluemix.net/apps/b2f2a4ea-edba-415d-ac9d-cfeb2bce8d44?env_id=ibm:yp:us-south "ibm:yp:us-south:ageejas1:test"), including this commit


To make it working with settings file you should extend enumVarType to have typeEnumeration or to add IsEnumeration() to cOneParameter or cParameter to check how the value should be processed.
Without it during loading settings will be difficult to interpret parameters.


The `is` in comment should be `if`


sorry, wrong comment.


Proposal for the 1st Capstone project


Hey! Props for reaching out on Slack! That said, the placement if the `else if` statement isn't the problem. The reason why it's not the problem is that the return statement is within the previous `else if` block (and therefore wouldn't affect the next `else if` statement).

The problem you're looking for has to do with the two variables your comparing to each other. Look at what those variables represent. See the problem?


@Utumno I made the discussed changes to the and squashed them into this commit.

Doing this I encountered a problem with git where the file `Bash Readme Template.html` would always show as having changed because it's line endings are in CRLF in the repo at github rather then the LF they should be. I tried for an hour to get rid of it and have git just ignore the line ending, but git completely ignore all settings to `core.autocrlf`. I couldn't even rebase without commiting this change because the rebase would be blocked by having unstaged changes in the repo. In the end I just gave up and let the rebase command do its thing where it squashed the line ending changes into this commit aswell.


Tem umas edições pra atualizar?


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/4209b58b-30d7-48a6-865e-6774412eec30 "cloud-native-toolchain-tutorial-20170917124016098"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/2da42e49-26c2-44d9-9cb3-5ccb1da74d46 "sample-cloud-native-toolchain-tutorial-20170917124016098") deployed [sample-cloud-native-toolchain-tutorial-20170917124016098](https://github.com/ngagejason/sample-cloud-native-toolchain-tutorial-20170917124016098/releases/tag/deploy-ibm-yp-us-south-ageejas1-prod-20170920-181523 "deploy-ibm-yp-us-south-ageejas1-prod-20170920-181523") to [prod](https://console.bluemix.net/apps/b9b5af6c-c051-4fb3-8e04-f06e25f208b8?env_id=ibm:yp:us-south "ibm:yp:us-south:ageejas1:prod"), including this commit


#include <stdio.h>
#define _CRT_SECURE_NO_WARNINGS
#include <math.h>

int main(void)
{
	int a;
	int b;
	int c;
	int d;
	int x1;
	int x2;

	printf("Please enter a value for a: \n");
	scanf_s("%f", &a);

	printf("Please enter a value for b: \n");
	scanf_s("%f", &b);

	printf("Please enter a value for c: \n");
	scanf_s("%f", &c);

	d = (b*b) - (4 * a*c);
	if (d > 0)
	{
		x1 = (-b + sqrt(d)) / (2 * a);
		x2 = (-b - sqrt(d)) / (2 * a);
		printf("x1 = %.2lf and x2 = %.2lf");
	}
	else
	{
		d = d * (-1);
		printf("There is no real root");
	}
	if (d = 0)
	{
		x1 = x2 = -b / (2 * a);
		printf("x1 = %.2lf");
	}
	return 0;
}


Well I fixed the symlinks so they're like the other patches but it doesn't seem like it's being properly applied as while it says:

```bash
 * Applying terminal-add.patch ...                                                          [ ok ]
```

src/terminal.c doesn't exist in the working directory (which this patch is meant to create). So I think I'll delete the revised ebuilds and just wait for 8.0.1130 to be released as upstream the fixed has been made.


#6320-Some-_ExternalInterface--test-files-not-transitioned-properly-for-new-field-in-ZoneHVACIdealLoadAirSystem (rraustad) - x86_64-MacOS-10.9-clang: OK (2765 of 2766 tests passed, 1 test warnings)

Messages:

 * 1 test had: AUD diffs.
 * 1 test had: BND diffs.
 * 1 test had: EIO diffs.
 * 1 test had: ESO big diffs.
 * 1 test had: MTD diffs.
 * 1 test had: MTR big diffs.
 * 1 test had: Table big diffs.

Failures:

regression Test Summary
 * Passed: 605
 * Failed: 1

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.96%25-yellow.png)


This is good. As you can see, this is very much different from `print_single_rec()`.


Sure, I get that.  But why use the `@property` decorator?


Dev test "Commit"


Satt overskrift