[R/create_beast2_input_beast.R:28:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_beast.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
    "namespace=\"beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.evolution.likelihood\" ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_data.R:12:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_data.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("id=\"", beastscriptr::get_file_base_sans_ext(input_fasta_filenames), "\""))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_data.R:14:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_data.R#L14) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, beastscriptr::create_beast2_input_data_sequences(input_fasta_filenames = input_fasta_filenames))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_data.R:22:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_data.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
create_beast2_input_data_sequences <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:8:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L8) *style:* **Variable and function names should not be longer than 30 characters.**
```r
create_beast2_input_distribution <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:20:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"YuleModel.t:", ids, "\" spec=\"beast.evolution.speciation.YuleModel\" birthDiffRate=\"@birthRate.t:", ids, "\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:21:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L21) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"YuleBirthRatePrior.t:", ids, "\" name=\"distribution\" x=\"@birthRate.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:22:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Uniform id=\"Uniform.1\" name=\"distr\" upper=\"Infinity\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:25:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L25) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"BirthDeath.t:", ids, "\" spec=\"beast.evolution.speciation.BirthDeathGernhard08Model\" birthDiffRate=\"@BDBirthRate.t:", ids, "\" relativeDeathRate=\"@BDDeathRate.t:", ids, "\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:26:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L26) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"BirthRatePrior.t:", ids, "\" name=\"distribution\" x=\"@BDBirthRate.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:27:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L27) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Uniform id=\"Uniform.3\" name=\"distr\" upper=\"1000.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:29:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"DeathRatePrior.t:", ids, "\" name=\"distribution\" x=\"@BDDeathRate.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:30:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L30) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Uniform id=\"Uniform.4\" name=\"distr\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:33:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L33) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"CoalescentConstant.t:", ids, "\" spec=\"Coalescent\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:34:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L34) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <populationModel id=\"ConstantPopulation.t:", ids, "\" spec=\"ConstantPopulation\" popSize=\"@popSize.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:47:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"BayesianSkyline.t:", ids, "\" spec=\"BayesianSkyline\" groupSizes=\"@bGroupSizes.t:", ids, "\" popSizes=\"@bPopSizes.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:48:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <treeIntervals id=\"BSPTreeIntervals.t:", ids, "\" spec=\"TreeIntervals\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:50:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"MarkovChainedPopSizes.t:", ids, "\" spec=\"beast.math.distributions.MarkovChainDistribution\" jeffreys=\"true\" parameter=\"@bPopSizes.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:55:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"KappaPrior.s:", ids, "\" name=\"distribution\" x=\"@kappa.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:56:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <LogNormal id=\"LogNormalDistributionModel.0\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:57:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L57) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.1\" estimate=\"false\" name=\"M\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:58:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L58) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.2\" estimate=\"false\" name=\"S\">1.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:62:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L62) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"kappa1Prior.s:", ids, "\" name=\"distribution\" x=\"@kappa1.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:63:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L63) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <LogNormal id=\"LogNormalDistributionModel.1\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:64:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L64) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.3\" estimate=\"false\" name=\"M\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:65:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.4\" estimate=\"false\" name=\"S\">1.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:68:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L68) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"kappa2Prior.s:", ids, "\" name=\"distribution\" x=\"@kappa2.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:69:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L69) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <LogNormal id=\"LogNormalDistributionModel.2\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:70:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L70) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.5\" estimate=\"false\" name=\"M\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:71:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L71) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.6\" estimate=\"false\" name=\"S\">1.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:75:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateACPrior.s:", ids, "\" name=\"distribution\" x=\"@rateAC.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:76:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L76) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.0\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:77:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L77) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.7\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:78:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L78) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.8\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:81:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L81) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateAGPrior.s:", ids, "\" name=\"distribution\" x=\"@rateAG.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:82:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.1\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:83:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L83) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.9\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:84:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L84) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.10\" estimate=\"false\" name=\"beta\">20.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:87:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateATPrior.s:", ids, "\" name=\"distribution\" x=\"@rateAT.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:88:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.2\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:89:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L89) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.11\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:90:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.12\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:93:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateCGPrior.s:", ids, "\" name=\"distribution\" x=\"@rateCG.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:94:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L94) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.3\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:95:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L95) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.13\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:96:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L96) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.14\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:99:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L99) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateGTPrior.s:", ids, "\" name=\"distribution\" x=\"@rateGT.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:100:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L100) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.5\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:101:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L101) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.17\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:102:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L102) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.18\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:133:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L133) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"JC69.s:", ids, "\" spec=\"JukesCantor\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:135:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L135) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"hky.s:", ids, "\" spec=\"HKY\" kappa=\"@kappa.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:136:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L136) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <frequencies id=\"estimatedFreqs.s:", ids, "\" spec=\"Frequencies\" frequencies=\"@freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:139:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L139) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"tn93.s:", ids, "\" spec=\"TN93\" kappa1=\"@kappa1.s:", ids, "\" kappa2=\"@kappa2.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:140:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_distribution.R#L140) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <frequencies id=\"estimatedFreqs.s:", ids, "\" spec=\"Frequencies\" frequencies=\"@freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:46:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_loggers.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"BayesianSkyline.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:53:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_loggers.R#L53) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:57:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_loggers.R#L57) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:35:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L35) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"YuleBirthRateScaler.t:", ids, "\" spec=\"ScaleOperator\" parameter=\"@birthRate.t:", ids, "\" scaleFactor=\"0.75\" weight=\"3.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:40:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"", operator_id_pre, "TreeScaler.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:46:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"", operator_id_pre, "TreeRootScaler.t:",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:52:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <operator id=\"", operator_id_pre, "UniformOperator.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:57:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L57) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"", operator_id_pre, "SubtreeSlide.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:63:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L63) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <operator id=\"", operator_id_pre, "Narrow.t:", ids, "\" spec=\"Exchange\" tree=\"@Tree.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:70:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L70) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <operator id=\"", operator_id_pre, "WilsonBalding.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:76:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L76) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"KappaScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@kappa.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:78:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L78) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"FrequenciesExchanger.s:", ids, "\" spec=\"DeltaExchangeOperator\" delta=\"0.01\" weight=\"0.1\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:79:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L79) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:83:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L83) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"kappa1Scaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@kappa1.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:85:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L85) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"kappa2Scaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@kappa2.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:87:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"FrequenciesExchanger.s:", ids, "\" spec=\"DeltaExchangeOperator\" delta=\"0.01\" weight=\"0.1\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:88:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:109:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L109) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"popSizesScaler.t:", ids, "\" spec=\"ScaleOperator\" parameter=\"@bPopSizes.t:", ids, "\" scaleFactor=\"0.75\" weight=\"15.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:111:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L111) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"groupSizesDelta.t:", ids, "\" spec=\"DeltaExchangeOperator\" integer=\"true\" weight=\"6.0\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:112:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_operators.R#L112) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <intparameter idref=\"bGroupSizes.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:38:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"birthRate.t:", ids, "\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:40:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"BDBirthRate.t:", ids, "\" lower=\"0.0\" name=\"stateNode\" upper=\"10000.0\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:41:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"BDDeathRate.t:", ids, "\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.5</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:43:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"popSize.t:", ids, "\" name=\"stateNode\">0.3</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:45:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"bPopSizes.t:", ids, "\" dimension=\"5\" lower=\"0.0\" name=\"stateNode\" upper=\"380000.0\">380.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:46:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <stateNode id=\"bGroupSizes.t:", ids, "\" spec=\"parameter.IntegerParameter\" dimension=\"5\">1</stateNode>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:51:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"kappa.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">2.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:52:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"freqParameter.s:", ids, "\" dimension=\"4\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:54:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L54) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"kappa1.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">2.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:55:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"kappa2.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">2.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:56:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"freqParameter.s:", ids, "\" dimension=\"4\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:58:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L58) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateAC.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:59:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateAG.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:60:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateAT.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:61:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L61) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateCG.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:62:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L62) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateGT.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:63:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/create_beast2_input_state.R#L63) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"freqParameter.s:", ids, "\" dimension=\"4\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_cbs_tree_prior.R:2:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/is_cbs_tree_prior.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param x an object, to be determined if it is a valid constant coalescent Bayesian skyline prior
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_cbs_tree_prior.R:3:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/is_cbs_tree_prior.R#L3) *style:* **Lines should not be more than 80 characters.**
```r
#' @return TRUE if x is a valid constant coalescent Bayesian skyline prior, FALSE otherwise
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_ccp_tree_prior.R:2:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/is_ccp_tree_prior.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @param x an object, to be determined if it is a valid constant coalescence population tree prior
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_ccp_tree_prior.R:3:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/R/is_ccp_tree_prior.R#L3) *style:* **Lines should not be more than 80 characters.**
```r
#' @return TRUE if x is a valid constant coalescence population tree prior, FALSE otherwise
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input_data.R:8:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input_data.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
  expected <- "                    <sequence id=\"seq_t1\" taxon=\"t1\" totalcount=\"4\" value=\"acttgttgcgactgcgcctg\"/>"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input_data.R:19:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input_data.R#L19) *style:* **Lines should not be more than 80 characters.**
```r
  expected <- "                    <sequence id=\"seq_t1\" taxon=\"t1\" totalcount=\"4\" value=\"acttgttgcgactgcgcctg\"/>"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:51:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:68:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L68) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "birth_death_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:82:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    tree_priors = beastscriptr::create_tree_prior(name = "coalescent_constant_population")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:85:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L85) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "coalescent_constant_population_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:101:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L101) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "yule_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:114:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L114) *style:* **Lines should not be more than 80 characters.**
```r
    tree_priors = beastscriptr::create_tree_prior(name = "coalescent_bayesian_skyline")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:117:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L117) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "coalescent_bayesian_skyline_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:128:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "jc69_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:139:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L139) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "hky_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:150:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "tn93_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-create_beast2_input.R:163:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-create_beast2_input.R#L163) *style:* **Lines should not be more than 80 characters.**
```r
  expected_lines <- readLines(system.file("extdata", "gtr_2_4.xml", package = "beastscriptr"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-is_yule_tree_prior.R:6:1:](https://github.com/richelbilderbeek/beastscriptr/blob/614e565d9d2a31147a62ab18f7a624c09088164e/tests/testthat/test-is_yule_tree_prior.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
  testthat::expect_false(is_yule_tree_prior(create_tree_prior(name = "birth_death")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Looks like this commit has caused issue

```
#!/bin/bash -eo pipefail
./gradlew assembleRelease
Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details
Download https://maven.google.com/com/android/tools/build/transform-api/2.0.0-deprecated-use-gradle-api/transform-api-2.0.0-deprecated-use-gradle-api.pom
Download https://maven.google.com/com/android/tools/build/transform-api/2.0.0-deprecated-use-gradle-api/transform-api-2.0.0-deprecated-use-gradle-api.jar
Download https://maven.fabric.io/public/io/fabric/tools/gradle/1.24.3/gradle-1.24.3.pom
Download https://maven.fabric.io/public/io/fabric/tools/gradle/1.24.3/gradle-1.24.3.jar

FAILURE: Build failed with an exception.

* What went wrong:
A problem occurred configuring project ':app'.
> SDK location not found. Define location with sdk.dir in the local.properties file or with an ANDROID_HOME environment variable.

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.

BUILD FAILED

Total time: 12.454 secs
Exited with code 1
```


Use `yield from` operator instead for 3.4 compatibility.


This is a demonstration on my Mac...
https://www.youtube.com/watch?v=kkR_wyRTP-g
This is a variation of the settings for represent 4 state sequential pattern on 2x2 crossing. ...


seems good


Use `@asyncio.coroutine` decorator instead of async keyword for Python 3.4 compatibility.


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/8feaf3fc-b4ba-4014-8921-6379ccb1930a "HULdownload"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/aa8cd606-50f0-4cad-a7d7-241b67a2b6e4 "HULdownload") deployed [HULdownload](https://github.com/tinusm/HULdownload/releases/tag/deploy-ibm-yp-us-south-TEAM17040311301800949-cloudnative-dev-20171019-111441 "deploy-ibm-yp-us-south-TEAM17040311301800949-cloudnative-dev-20171019-111441") to [cloudnative-dev](https://console.bluemix.net/apps/233800b3-440f-40a6-94ec-48b67e3763a6?env_id=ibm:yp:us-south "ibm:yp:us-south:TEAM17040311301800949:cloudnative-dev"), including this commit


maybe just drop 3.4 support for this feature for simplicity?


You can also cache by extension.

On Thu, Oct 19, 2017, 6:59 AM Janusz Białobrzewski <notifications@github.com>
wrote:

> It is important to optimize this method for it is called many times on
> expanding. Therefore I suggest to not combine the workingdir with filename
> if not needed (do it lazily in iconProvider)
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/gitextensions/gitextensions/commit/aad6ec931eed040eace5a5cb6e15360a5d72a6fe#commitcomment-25074599>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ADdhsQoj8rQioZ5ja715HEV_1XMLSooXks5styuWgaJpZM4P_DQH>
> .
>


@nyalldawson What's the reason behind this change? It pretty much does the opposite of speeding up things in the geometry checker because I now need to construct a QgsGeometry for each geometry to combine, instead of just being able to pass the QgsAbstractGeometries which I already have.


I would prefer supporting it. The change is risk free and trivial.


![](https://github.trello.services/images/mini-trello-icon.png) [Display image number/total number when album](https://trello.com/c/EJ6NNJiW/1-display-image-number-total-number-when-album)


https://docs.python.org/3/library/inspect.html#inspect.iscoroutinefunction
and
https://docs.python.org/3/library/inspect.html#inspect.isawaitable
is 3.5 only


It's pretty easy to set up, however as I understand it, it's mostly designed to work with requirements files rather than setup.py `install_requires` or `tests_require` (since it by default pins to exact versions and can update the pip hashes etc, both of which are not normally done in setup.py).

For `install_requires`, I think updating by hand is probably easiest, since (a) it would be hard for pyup.io to figure out the desired version range, (b) it doesn't change very often.

For `tests_require`, since they're pinned currently, they are a better fit for pyup.io - and so one option would be to move them to a requirements file, and instead have pip/tox install from that, rather than relying on setuptools auto-installing them during `setup.py test` (which is a bit of an old way of running things anyway).


お疲れ様です！
抽象クラスOKです！細かい結果も書かれていて良いですね！ちなみにジャッジのスペルは「judge」です


You still need the file resource. Only the require is optional, since puppet should do that for you.


Instead of hardcoding this, you could compile this list at game/server startup.


Correct. The require is optional.


in my opinion will be better make this feature 3.5+ only, for 3.4 old variant with pook.activate call as a function can be used


Thanks for figuring out. Please try with next build again!

Cheers


'expires=Mon, 07 Jan 2036 00:00:00 GMT;の前に;がいる


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ss


In the light of putting as little strain as possible on the API, shouldn't we do a clean logout before the new login?


Some feedback after showing it @pesterhazy:
- s/validate-yaml.clj/validate-yaml.cljs/
- add dependencies to a package.json?
- "looks great"


This broke the [Temporary Directory standard](https://github.com/oeed/CraftOS-Standards/blob/2a92b286d981d2f06bec24f542e6dc6cbeaa3314/standards/7-temp-directory.md) (look down at the Lua code)


Maybe I need to mention you @davidchambers otherwise you won't get notified?


This wouldn't work because you are using string interpolation with single quotes. String interpolation works with double quotes. `'#{mentor_id}' ` should be `"#{mentor_id}"`


I think you meant `require_relative` here


String interpolation works with double quotes


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/dd1eda5f-ea15-4f78-8235-461f8ec39446 "archive-lab"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/e743c5c0-3d7c-4c19-8f52-f4079e61eca0 "archive-lab") deployed [archive-lab](https://github.com/jesiels/archive-lab/releases/tag/deploy-ibm-yp-us-south-jesiels-br.ibm.com-dev-20171019-112449 "deploy-ibm-yp-us-south-jesiels-br.ibm.com-dev-20171019-112449") to [dev](https://console.bluemix.net/apps/aa8e2b12-dd89-4fdc-a9a4-37b3ed82caa6?env_id=ibm:yp:us-south "ibm:yp:us-south:jesiels@br.ibm.com:dev"), including this commit


@G1GC Please review.


String interpolation works with double quotes. It should be `"roadmaps/#{roadmap_id}"`


Thanks @mindrunner for the quick fix.


缩进有4个空格


This should be `"checkpoints/#{checkpoint_id}"`


your final decision on this? patch to yield from or to leave as is?


You can provide text and description in action's constructor


Top notch commit message :+1: :P


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/5eb996ed-9849-4e50-8202-b8c7b70966de "blg361"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/c85729ea-5eec-49d8-a52e-385179275694 "itucsdb1705") deployed [itucsdb1705](https://github.com/itucsdb1705/itucsdb1705/releases/tag/deploy-ibm-yp-us-south-toppeker-itu.edu.tr-dev-20171019-112640 "deploy-ibm-yp-us-south-toppeker-itu.edu.tr-dev-20171019-112640") to [dev](https://console.bluemix.net/apps/387666c1-cba5-45b5-b795-549303bb8d04?env_id=ibm:yp:us-south "ibm:yp:us-south:toppeker@itu.edu.tr:dev"), including this commit


Thanks. I received the notifications. I'll make these changes. :)


aaa


you can use "setEnabledAndVisible" here


Yes that is most definitely one way of taking care of it.  But how long until this method no longer works or as in an other perspective, how much of the flash is tied up in strings?


![エビフライトライアングル](http://i.imgur.com/Jjwsc.jpg "サンプル")


you don't have to set text manually, as you already passed it in constructor


@jroper You didn't push the git tag to the GitHub repo.


This looks like it made iteration of a `WeakRefString` allocate via https://github.com/JuliaLang/julia/blob/389b23cf6ec55d52b4df7ee703e810bc76244c4a/base/strings/basic.jl#L31 which seems to be pretty costly for `TextParse`. Before
```julia
julia> @btime done(mywrstring, 1)
  28.428 ns (0 allocations: 0 bytes)
false
```
after:
```julia
julia> @btime done(mywrstring, 1)
  61.653 ns (1 allocation: 32 bytes)
false
```
cc: @shashi


That is a fair point and initially I did. There are a few problems there. First the logout is an extra network call and not knowing how the service is build there is no way to know what is more expensive, the network connectivity part which we are already abusing slightly or the inactive session cleanup. I chose to save the network call for the extra session hoping that if the service is build correctly as soon as we are provided with a new valid login there should be some clean up on our old one and we don't actually have to explicitly logout (That of course is just a guess). Second is that the way the code is currently written the logout also does the reverting of the state to the initial one which means that we are risking to have some values returned as their default if the api does not respond fully which is something that happens quite often. The way it is wired now we will get the last value we had for that item which would be closer to the current situation than its default one. I hope these explanations make sense and again they are mostly based on hunches and guesses so take them with a grain of salt.


/play secret
:heavy_dollar_sign:
设置消息，登录后


A few hundred bytes. Beyond the strings, we'll need to come up with some really clever ideas for how to bring the code size down.

Supposedly most of the BluePills actually have 128k of flash rather than the 64k that PlatformIO seems to think. There may be some way to override this longer term if that is correct.


It would be nice to have some documentation...


If the object is not planned for creation and we assume already that we will inherit from it, why not to make it an abstract class?

This implementation creates a couple of additional fields that won't be used. (same applies to DetailedInfo class)


Let's define the string literal in the enum instead of the method. Something like:
```
public enum SortFacetValuesBy {
COUNT {
                @Override
                 public String toString() {
                   return "count";
           }
  },
  ALPHA {
                @Override
                 public String toString() {
                   return "alpha";
           }
  }
}
```


push media queries to style.css


No need for switch anymore, just return set(KEY_SORT_FACET_VALUES_BY, order.toString())


I got it!!!oneeleven111  :p

```
diff --git a/crypt.c b/crypt.c
index bd9d4bf..6324970 100644
--- a/crypt.c
+++ b/crypt.c
@@ -56,7 +56,8 @@ get_internal (struct crypt_data *data)
 {
   uintptr_t internalp = (uintptr_t) data->internal;
   uintptr_t align = alignof (struct crypt_internal);
-  internalp = (internalp + align - 1) & ~align;
+  if (internalp % align != 0)
+    internalp = (internalp + align) & ~align;
   return (struct crypt_internal *)internalp;
 }
```
This change fixes all problems with `SIGBUS` on ARM and most of `SIGILL` on S390X.

`internalp = (internalp + align - 1) & ~align;` for some reason always moved the pointer to an odd address (with of course never can be 8 bytes (alignof (struct crypt_internal)) aligned).

My change makes sure the returned pointer is always aligned in a way the alignment for the struct itself and all it's data members is met.

***

On S390X there are two test terminating with `SIGILL` left:
* FAIL: test-crypt-des
* FAIL: test-crypt-md5

See [build.log](https://paste.fedoraproject.org/paste/AmGWrHp~vjoN5WrWXfZB9A).


done


We've agreed to keep login/passwords private, didn't we?
Also, it's not nice to have connection string hard-coded, I'd prefer to have it in some config file.


@MaxPresman: you forgot to update package.json and revert it to use uuid. This means this module is now broken on fresh installs.


Tutttttt


Add @NotNull here


If there's no changed behavior, why do you override the property?
Each virtual and overridden method or property has a cost.


Have you solved the problem yet?

I am using the original data pack


Alsome


Changed it here: 5a125aa514e5891b03f6db10bc52904d710c5bbf.


Added methods setOfficeDefaultOn / setOfficeDefaultOff to class rules. It overrides the default for office extension. Implemented three methods dealing with formating issues as examples.
Please test it.
I hope you enjoy the new feature.


If the field is initialized in constructor and is never changed elsewhere during class runtime, mark it "readonly"


file 2


aaa


Вас понял -__-


I know 100% sure that we tested it on 2017. I think I remember there was also talk about testing on 2018, but I don't know how far that plan was put through. Apparently it was a completed test.


txclib is working on P3? I thought it was that one the implied. Then we can implement that patch. Thanks for checking.


Can confirm. Breaks flex layout in slides.


Can you use getGPUVendor instead?


@D4id4los:

I really need to merge - could you please help me address:

- scandir 1.6 - works ok ?
- document msvc dependency

Thanks :)


If the method body is planned to be short, consider using "lambda"-operator
https://docs.microsoft.com/en-us/dotnet/csharp/language-reference/operators/lambda-operator


No problem. Just make a request to the support and they will take care of it.
http://support.telldus.com


no i didnt ill revert,  u make sense but ZUTILSBRANCH is not used anywhere and JS9BRANCH is never mentioned after wards ,


Would you care to elaborate, please?

In the raspberry pi kernel source, both [RASPBERRYPI_FIRMWARE](https://github.com/raspberrypi/linux/blob/aedca583da8bbf5fbd6fdf9ac90d0ad3d2f88ec2/drivers/firmware/Kconfig#L168) and [BCM_VCIO](https://github.com/raspberrypi/linux/blob/aedca583da8bbf5fbd6fdf9ac90d0ad3d2f88ec2/drivers/char/broadcom/Kconfig#L27) depend on it and both of which are set to `y` in this config.

Currently my attempts to build [rpi 4.9.56](https://github.com/raspberrypi/linux/tree/6f54be87ea3626536a446e14bdbad9cffd650e1a) fail regardless of BCM2835 mailbox support is `y` or `n`, but I managed to compile 4.9.54 using this kernel config stub a couple days ago.


Yes, it should. Perhaps I was changing the return type at some point and removed `static`.


DBContext class is disposable. Where's your class disposed?
https://msdn.microsoft.com/ru-ru/library/system.data.entity.dbcontext(v=vs.113).aspx


@D4id4los:

We need to merge ASAP - please edit the commit message as you see fit then sign and commit (cherry-pick) on dev -  however the parent (scandir commit has to be merged first) - yep will give you write rights there :)

Note you have to add " Closes # 373 " - as you see I leave a space between the hash and the issue number - this way all the intermediate rebased commits do not add a reference to the issue - but in the final merge the space must of course be omitted.


*submit button wasn't broken, was just too dumb; I forgot that html5 required popup pops up below the input (which is on another page)


Consider rewriting this to have a predictable exposing strategy. Also, there might be an issue that if you declare this class as a Singleton dependency, some garbage will be cached in these context classes during the existance of the app.


why ?


fonts link update


hhhh


Foei!


@LarsKorpel 👎


Thanks @ChrisMcGowan & @lnguyen — I found your explanation instructive.

If things are working fine with your current way of deploying `ntpd` (i.e. via `yum`), I wouldn't put any effort into `chrony` — there's nothing special about chrony over `ntp`. I run several servers in the NTP pool, some of them deployed via BOSH, and some of them hand-built, and I used `chrony` for one of them to kick the tires, and it worked fine. Although [the `chrony` authors state](https://chrony.tuxfamily.org/faq.html#_how_does_code_chrony_code_compare_to_code_ntpd_code) that it keeps better time than `ntpd` on VMs, I didn't see that reflected in the metrics published by the NTP pool (my most accurate VM timekeeper ran on GCP using `ntpd`).

I'm worried that the NTP release doesn't work on the latest CentOS stemcells. Would you be so kind as to **let me know which stemcell version** (e.g. 3445.11) you're running so I can test it on my network? Thank you.


"Geoalgorithm" (with a short explanation) or "spatial algorithm" is fine with me. We just need to decide on one and use it - not to mix both.


Yes, we can, it's not a problem


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/dd1eda5f-ea15-4f78-8235-461f8ec39446 "archive-lab"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/e743c5c0-3d7c-4c19-8f52-f4079e61eca0 "archive-lab") deployed [archive-lab](https://github.com/jesiels/archive-lab/releases/tag/deploy-ibm-yp-us-south-jesiels-br.ibm.com-dev-20171019-115430 "deploy-ibm-yp-us-south-jesiels-br.ibm.com-dev-20171019-115430") to [dev](https://console.bluemix.net/apps/837cf3db-3c7e-448b-8f74-78f9ded49e79?env_id=ibm:yp:us-south "ibm:yp:us-south:jesiels@br.ibm.com:dev"), including this commit


Maybe instead of rendering a parent with a state, you can just use jest.fn() to mock the onChange, and to make sure it was called with ""


@frandiox
Is there any reason to remove `core-dts-test`?
I would like to at least run `core-dts-test` on CircleCI...


what about focus?


@Bahchaev задание упражнения 5 имхо сформулировано странно. Написано "Добавьте метод `wheels` к классу `Cycle`", а в конце "убедитесь, что полиморфизм работает". Но никакого полиморфизма тут нет - в твоей реализации вызывается просто базовый метод `wheels`, для любого вида транспортного средства.

Предполагаю, что логика предполагается такая же, как в примере с фигурами (в базовой фигуре задан метод `draw`, который ничего не делает. В производных фигурах он переопределен. Поэтому предлагаю сделать так же здесь:

- у `Cycle` метод `wheels` пустой (состоит из пустого тела `{}`) и не принимает аргументов
- у производных классов метод `wheels` переопределен и возвращает конкретное число (2,3,4)

Как бонус - мы избавляемся от аргумента. Количество колес вообще не должно приходить в качестве аргумента, иначе мы позволяем вывести сообщение "Количество колес - <любое число>" для любого транспортного средства, а это неправильно.


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/dd1eda5f-ea15-4f78-8235-461f8ec39446 "archive-lab"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/e743c5c0-3d7c-4c19-8f52-f4079e61eca0 "archive-lab") deployed [archive-lab](https://github.com/jesiels/archive-lab/releases/tag/deploy-ibm-yp-us-south-jesiels-br.ibm.com-dev-20171019-115626 "deploy-ibm-yp-us-south-jesiels-br.ibm.com-dev-20171019-115626") to [dev](https://console.bluemix.net/apps/2350954d-3455-436e-a44f-79b6168b4154?env_id=ibm:yp:us-south "ibm:yp:us-south:jesiels@br.ibm.com:dev"), including this commit


I regret to say that it worked.


@Shashirao27, your answer help someone yet! Thanks a lot!


that determines which filter was selected, standard class or first class by user


No, I can delete it


Hello world!


Sorry, I'll delete it


why do we need the () => false ?
Wouldn't it be better just to check if the callback wasn't provided?


@D4id4los - Wait!

Unfortunately this is still buggy - to repro, start with debug.bat (maybe not needed) after editing the game ini (say Oblivion.ini) to contain unicode characters. The UI will be left hanging in an unconsistent state. Sys.exit probably it's not the way to go here.


if (!preventClearing && this.input) {
  this.input.value = '';
}


@asial-matagawa I think it should not be included in `unit-test`. I'll create a different task for CircleCI :+1:


wow


Shouldn't this be:

```
        "golang.org/x/net/context"
```

To be backwards compatible with golang 1.6.x and earlier?
I'm having trouble using this on Ubuntu Xenial with go 1.6.2 in the Apache Thrift docker build image, but if I change it to the golang variety it gets past the error of "context not found".

Also see:
See: https://github.com/mlaventure/containerd/commit/fa71c585c9d437605b78a4ae3cd66284d7053ea6


@frandiox
I think so too. Thank you!


TeamCity LCM :: liblcm-win64-master Continuous [Build 57](http://build.palaso.org/viewLog.html?buildId=100510&buildTypeId=Liblcm_LiblcmWin64masterContinuous) outcome was **FAILURE**
Summary: Error while applying patch Build time: 00:00:06


TeamCity LCM :: liblcm-win32-master Continuous [Build 74](http://build.palaso.org/viewLog.html?buildId=100511&buildTypeId=Liblcm_LiblcmWin32masterContinuous) outcome was **FAILURE**
Summary: NUnit error running tests in 'C:\BuildAgent\work\8a4ced8090a4a0ab\artifacts\Release\SIL.LCModel.Core.Tests.dll' assembly
Loading assembly is compiled for v4.0.30319, MSIL
NUnit runner runtime is v4.0.30319, x86
System.IO.FileNotFoundException: Could ... Build time: 00:00:31


This would become a global setting rather than per proxy setting, hence we will end up in closing and recreating every single connection here


Should not be optional


TeamCity LCM :: liblcm-linux64-master Continuous [Build 70](http://build.palaso.org/viewLog.html?buildId=100512&buildTypeId=Liblcm_LiblcmLinux64masterContinuous) outcome was **SUCCESS**
Summary: Tests passed: 2614, ignored: 32 Build time: 00:01:30


Fixed #110


I can confirm that. After this commit server wont start, it fails to load monsters.


@G1GC, @ashwanthkumar and I discussed this; is it possible to do this per-request?


@Bahchaev Если применить подход который я предложил, то метод `wheels`  становится полиморфным. Т.е. имея ссылку типа `Cycle` и вызывая у объекта по этой ссылке метод `wheels` - будет вызвана именно та реализация, которая соответствует объекту (т.е. из `Unicicle`, `Bicycle`, `Tricycle`...), а не базовая.

В условиях задач не сказано, что `ride` нужно переопределять в каждом классе, поэтому я предлагаю оставить только эту базовую реализацию и написать в ней что-то вроде (не уверен нужно ли явно преобразовывать число в строку перед конкатинацией):
```
System.out.println("Riding on Cycle with wheels number" + wheels());
```


@philsquared As long as idMap contains only plain strings, not actual patterns, this new for loop can be done in one global substitution:
```python
# \b matches at word boundary, so we replace only whole identifiers
line = re.sub(r"\b[A-Za-z_]\w*\b", lambda m: self.idMap.get(m.group(), m.group()), line)
```


To shorten code?

You know you can currently write

f(xmin=3, a=1.5, autoplot=False)

Right?

On Oct 19, 2017 1:09 AM, "jayich" <notifications@github.com> wrote:

> this would be self.fit_settings.autoplot, for example. Probably shorten
> self.fit_settings to self.fs.
>
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> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
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そうだった。
=イコールじゃなくて:コロンだったね。


呐尼？只改了版本号么


К стати, ты как запустишь свой мод на этом движке - отпиши, плз, будут ли у тебя проблемы с моделями.
Мне вот всё таки кажется, что тут банально кости некоторые не скрываются, ведь проблемы только с оружием же, а с моделями НПС и прочего, всё нормально вроде.


@Bahchaev А еще в задаче сказано, что метод должен возвращать кол-во колес, а не выводить его на экран. Поэтому не `void wheels() {`, а `int wheels() {` и пускай возвращает число. А дальше пользователь метода сам решит, выводить число в консоль, делить на него вес автомобиля или еще чего.


no spaces please


Dockerfile should be placed in src/main/docker folder.


Will this also handle cases like `object && object.status != "failed"` and `object && object.date < Time.now`?


Misc is not a good place for these. Need to find a better home. `Chunk.Quantity`?


Consider `--workspace-pool-size=auto` which leads to  `(threads - 1) / 2 + 1` value.


@llevar how come you left all ports open here?


This seems like a bad change - it used to take a symbol, now it takes an `Expr` ?


Ditto


I don't think so. But we can try this option out, using FIFO instead of LIFO for leasing connections as described here - https://github.com/AsyncHttpClient/async-http-client/wiki/Connection-pooling#defaultchannelpool


good advice, thx


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Should revert to using a lock in this case?


I think we need a way to be able to specify a "variable" as something special, outside an `Expr`.


@pefernan after these changes there are many indexing errors in server.log when you import any of these projects containing new forms:

Could you please check that (at least file jira and possibly fix that later)?
14:11:36,538 ERROR [org.kie.workbench.common.services.refactoring.backend.server.indexing.AbstractFileIndexer] (Thread-124) Unable to index 'default://master@examples-.kie-wb-playground/evaluation/src/main/resources/PerformanceEvaluation-taskform.frm'.: java.lang.IllegalArgumentException: formfield reason has already been added!
	at org.kie.workbench.common.services.refactoring.Resource.addPart(Resource.java:48)
	at org.kie.workbench.common.forms.editor.backend.indexing.FormDefinitionVisitor.visit(FormDefinitionVisitor.java:42)
	at org.kie.workbench.common.forms.editor.backend.indexing.FormDefinitionVisitor.lambda$visit$0(FormDefinitionVisitor.java:38)
	at java.util.ArrayList.forEach(ArrayList.java:1249)
	at org.kie.workbench.common.forms.editor.backend.indexing.FormDefinitionVisitor.visit(FormDefinitionVisitor.java:38)
	at org.kie.workbench.common.forms.editor.backend.indexing.FormDefinitionIndexer.fillIndexBuilder(FormDefinitionIndexer.java:78)
	at org.kie.workbench.common.services.refactoring.backend.server.indexing.AbstractFileIndexer.toKObject(AbstractFileIndexer.java:78)
	at sun.reflect.GeneratedMethodAccessor52.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.jboss.weld.bean.proxy.AbstractBeanInstance.invoke(AbstractBeanInstance.java:38)
	at org.jboss.weld.bean.proxy.ProxyMethodHandler.invoke(ProxyMethodHandler.java:100)
	at org.uberfire.ext.metadata.engine.Indexer$1413365321$Proxy$_$$_WeldClientProxy.toKObject(Unknown Source)
	at org.uberfire.ext.metadata.io.BatchIndex$3.visitFile(BatchIndex.java:178)
	at org.uberfire.ext.metadata.io.BatchIndex$3.visitFile(BatchIndex.java:144)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:70)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:95)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:95)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:95)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:95)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:95)
	at org.uberfire.java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:47)
	at org.uberfire.java.nio.file.Files.walkFileTree(Files.java:1030)
	at org.uberfire.java.nio.file.Files.walkFileTree(Files.java:1051)
	at org.uberfire.ext.metadata.io.BatchIndex.run(BatchIndex.java:142)
	at org.uberfire.ext.metadata.io.BatchIndex.run(BatchIndex.java:127)
	at org.uberfire.ext.metadata.io.BatchIndex$1.run(BatchIndex.java:98)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:748)


Bluemix [toolchain](https://console.bluemix.net/devops/toolchains/75ab79e1-3c67-4ad4-98d2-8192838bd51c "ppm-planoMetas"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/9eba9ddd-523e-4f5d-ab1b-f6856783ee9a "ppm-planoMetas") deployed [ppm-planoMetas](https://github.com/alessandralima/ppm-planoMetas/releases/tag/deploy-ibm-yp-us-south-limaa-br.ibm.com-dev-20171019-121445 "deploy-ibm-yp-us-south-limaa-br.ibm.com-dev-20171019-121445") to [dev](https://console.bluemix.net/apps/09e8a50e-f149-405e-b2d1-743a9871c363?env_id=ibm:yp:us-south "ibm:yp:us-south:limaa@br.ibm.com:dev"), including this commit


could, you, please, explain, why it shouldn't be optional?


Print the value under the number of threads.
`echo "[TEST] Threads          : "${THREADS}`


This is a little bit more readable I guess:
`for (byte byt : bytes) result.append(String.format("%02x", byt));`


   UserAgent   = 'DESKTOP:MAC:10.10.2-YOSEMITE-x64(4.5.0)'

     AppName     = 'DESKTOPMAC 10.10.2-YOSEMITE-x64    MAC 4.5.0'

     port        = 443

-    systemname  = 'Farzain-zFz

+    systemname  = 'Farzain-zFz'

     ip          = '8.8.8.8'

     _session = requests.session()

     Headers = {}


@Robbie1977 argh I was 100% positive I had already swapped these - maybe lost in merge?


@jhrcek yes let me take a look.


But it's impossible in case of usage @Inject annotation.


It feels to me that that line of code shouldn't have been in tiny. It is a common enough thing to do that it should be pulled out.  And I am surprised to find "for" and "and" here.  In fact, isn't there a title-making combinator for just this?


@G1GC That can also be surfaced in `clientSettings`; ultimately leaving it to the user to set it to whatever they want.


Voici une autre solution pour gérer les pays dans Laravel si jamais: https://github.com/webpatser/laravel-countries
Utilisez au maximum l'[ORM de Laravel](https://laravel.com/docs/5.5/eloquent) afin d'utiliser les modèles dans les Seeders pour nourrir votre base de données. Ce dernier conseil s'applique notamment à `personnalities` et `qualities`.
Evitez au maximum de faire du `SQL` vous même à part quand c'est vraiment nécessaire et tentez d'utiliser le plus possible l'ORM de Laravel.
Bonne suite de projet.


@brainstorm, this is meant as an test deployment (that's why it's in examples) and wide access is limited to the subnet. A production deployment should tighten these up similar to the OpenStack security group here, for instance (https://github.com/llevar/pcawg-germline/blob/master/deployment/embassy/security-groups/internal.tf)


maybe create a function such as 'getActionNameFromFunction()'


remove this print


okay


We set it in `webdriver.sh` script


@Bahchaev Но здесь может появиться загвоздка - у каждого твоего класса есть метод `wheels`. У `Unicicle` одно колесо, у `Bicycle` - 2... А у `Cycle` сколько - не понятно. Нужно что-то с этим делать.
Один из подходов (самый простой) - придумать "соглашение" о том, что если мы возвращаем какое-то определенное значение - нужно трактовать его как "операция не имеет смысла", "неоднозначно", "не найдено" и т.п. Требование к такому значению - оно должно лежать за границами допустимых нормальных значений. Например `4` - плохое значение для ошибки: в будущем мы можем добавить квадроцикл, а у него как раз 4 колеса. А `-1` - хорошее: отрицательного кол-ва колес вроде у нас не предвидится.

Поэтому предлагаю так и сделать - в базовом методе `wheels` (в классе `Cycle` возвращать `-1`)


maybe an explicit documentation here.
More than creating paths, it also generates lists of items/tasks to process later.


Did you use `.txt` extension deliberately? If not, all the docs should be `.md` to be properly rendered by GitHub.


Let's remove annotation then


Unrelated comments, but this format does not work with python 2.7


As I said, not sure why we need this behaviour


@mindrunner

Thanks once again. This fixed the issue.

[![diwali-reduced](https://user-images.githubusercontent.com/1727061/31770478-b78d7a48-b4f5-11e7-9c29-ad8017255543.jpg)](https://play.google.com/store/apps/details?id=com.myignou&hl=en)

[This](https://play.google.com/store/apps/details?id=com.myignou&hl=en) is the android application for which I utilize this docker image to automate tests and builds