[R/create_beast2_input_beast.R:31:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_beast.R#L31) *style:* **Lines should not be more than 80 characters.**
```r
    "namespace=\"beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.evolution.likelihood\" ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_data.R:12:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_data.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("id=\"", beastscriptr::get_file_base_sans_ext(input_fasta_filenames), "\""))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_data.R:14:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_data.R#L14) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, beastscriptr::create_beast2_input_data_sequences(input_fasta_filenames = input_fasta_filenames))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_data.R:22:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_data.R#L22) *style:* **Variable and function names should not be longer than 30 characters.**
```r
create_beast2_input_data_sequences <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:10:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L10) *style:* **Variable and function names should not be longer than 30 characters.**
```r
create_beast2_input_distribution <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:23:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L23) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"YuleModel.t:", ids, "\" spec=\"beast.evolution.speciation.YuleModel\" birthDiffRate=\"@birthRate.t:", ids, "\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:24:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"YuleBirthRatePrior.t:", ids, "\" name=\"distribution\" x=\"@birthRate.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:25:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L25) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Uniform id=\"Uniform.1\" name=\"distr\" upper=\"Infinity\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:28:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"BirthDeath.t:", ids, "\" spec=\"beast.evolution.speciation.BirthDeathGernhard08Model\" birthDiffRate=\"@BDBirthRate.t:", ids, "\" relativeDeathRate=\"@BDDeathRate.t:", ids, "\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:29:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"BirthRatePrior.t:", ids, "\" name=\"distribution\" x=\"@BDBirthRate.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:30:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L30) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Uniform id=\"Uniform.3\" name=\"distr\" upper=\"1000.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:32:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L32) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"DeathRatePrior.t:", ids, "\" name=\"distribution\" x=\"@BDDeathRate.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:33:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L33) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Uniform id=\"Uniform.4\" name=\"distr\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:36:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"CoalescentConstant.t:", ids, "\" spec=\"Coalescent\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:37:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <populationModel id=\"ConstantPopulation.t:", ids, "\" spec=\"ConstantPopulation\" popSize=\"@popSize.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:50:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"BayesianSkyline.t:", ids, "\" spec=\"BayesianSkyline\" groupSizes=\"@bGroupSizes.t:", ids, "\" popSizes=\"@bPopSizes.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:51:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <treeIntervals id=\"BSPTreeIntervals.t:", ids, "\" spec=\"TreeIntervals\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:53:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L53) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <distribution id=\"MarkovChainedPopSizes.t:", ids, "\" spec=\"beast.math.distributions.MarkovChainDistribution\" jeffreys=\"true\" parameter=\"@bPopSizes.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:58:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L58) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"KappaPrior.s:", ids, "\" name=\"distribution\" x=\"@kappa.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:59:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <LogNormal id=\"LogNormalDistributionModel.0\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:60:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.1\" estimate=\"false\" name=\"M\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:61:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L61) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.2\" estimate=\"false\" name=\"S\">1.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:65:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"kappa1Prior.s:", ids, "\" name=\"distribution\" x=\"@kappa1.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:66:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L66) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <LogNormal id=\"LogNormalDistributionModel.1\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:67:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L67) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.3\" estimate=\"false\" name=\"M\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:68:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L68) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.4\" estimate=\"false\" name=\"S\">1.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:71:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L71) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"kappa2Prior.s:", ids, "\" name=\"distribution\" x=\"@kappa2.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:72:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L72) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <LogNormal id=\"LogNormalDistributionModel.2\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:73:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L73) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.5\" estimate=\"false\" name=\"M\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:74:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L74) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.6\" estimate=\"false\" name=\"S\">1.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:78:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L78) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateACPrior.s:", ids, "\" name=\"distribution\" x=\"@rateAC.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:79:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L79) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.0\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:80:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L80) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.7\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:81:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L81) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.8\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:84:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L84) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateAGPrior.s:", ids, "\" name=\"distribution\" x=\"@rateAG.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:85:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L85) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.1\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:86:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L86) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.9\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:87:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.10\" estimate=\"false\" name=\"beta\">20.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:90:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateATPrior.s:", ids, "\" name=\"distribution\" x=\"@rateAT.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:91:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L91) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.2\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:92:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L92) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.11\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:93:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.12\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:96:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L96) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateCGPrior.s:", ids, "\" name=\"distribution\" x=\"@rateCG.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:97:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L97) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.3\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:98:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L98) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.13\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:99:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L99) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.14\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:102:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L102) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"RateGTPrior.s:", ids, "\" name=\"distribution\" x=\"@rateGT.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:103:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L103) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.5\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:104:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.17\" estimate=\"false\" name=\"alpha\">0.05</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:105:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L105) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.18\" estimate=\"false\" name=\"beta\">10.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:111:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L111) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("            <prior id=\"ucldStdevPrior.c:", ids, "\" name=\"distribution\" x=\"@ucldStdev.c:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:112:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L112) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <Gamma id=\"Gamma.0\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:113:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L113) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.2\" estimate=\"false\" name=\"alpha\">0.5396</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:114:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L114) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"RealParameter.3\" estimate=\"false\" name=\"beta\">0.3819</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:141:3:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L141) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/create_beast2_input_distribution.R:142:23:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L142) *warning:* **no visible global function definition for ‘get_prop_invariant’**
```r
    prop_invariant <- get_prop_invariant(site_models)
                      ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:146:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L146) *style:* **Lines should not be more than 80 characters.**
```r
      "name=\"proportionInvariant\" upper=\"1.0\">", prop_invariant, "</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:158:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L158) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"JC69.s:", ids, "\" spec=\"JukesCantor\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:160:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L160) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"hky.s:", ids, "\" spec=\"HKY\" kappa=\"@kappa.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:161:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L161) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <frequencies id=\"estimatedFreqs.s:", ids, "\" spec=\"Frequencies\" frequencies=\"@freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:164:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L164) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"tn93.s:", ids, "\" spec=\"TN93\" kappa1=\"@kappa1.s:", ids, "\" kappa2=\"@kappa2.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:165:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L165) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <frequencies id=\"estimatedFreqs.s:", ids, "\" spec=\"Frequencies\" frequencies=\"@freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:168:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L168) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <substModel id=\"gtr.s:", ids, "\" spec=\"GTR\" rateAC=\"@rateAC.s:", ids, "\" rateAG=\"@rateAG.s:", ids, "\" rateAT=\"@rateAT.s:", ids, "\" rateCG=\"@rateCG.s:", ids, "\" rateGT=\"@rateGT.s:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:169:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L169) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <parameter id=\"rateCT.s:", ids, "\" estimate=\"false\" lower=\"0.0\" name=\"rateCT\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:170:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L170) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <frequencies id=\"estimatedFreqs.s:", ids, "\" spec=\"Frequencies\" frequencies=\"@freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:178:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L178) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <branchRateModel id=\"StrictClock.c:", ids, "\" spec=\"beast.evolution.branchratemodel.StrictClockModel\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:185:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L185) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                <branchRateModel id=\"RelaxedClock.c:", ids, "\" spec=\"beast.evolution.branchratemodel.UCRelaxedClockModel\" rateCategories=\"@rateCategories.c:", ids, "\" tree=\"@Tree.t:", ids, "\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:186:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <LogNormal id=\"LogNormalDistributionModel.c:", ids, "\" S=\"@ucldStdev.c:", ids, "\" meanInRealSpace=\"true\" name=\"distr\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:187:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L187) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                        <parameter id=\"RealParameter.1\" estimate=\"false\" lower=\"0.0\" name=\"M\" upper=\"1.0\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distribution.R:189:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_distribution.R#L189) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("                    <parameter id=\"ucldMean.c:", ids, "\" estimate=\"false\" name=\"clock.rate\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:49:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"BayesianSkyline.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:56:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:60:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:67:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L67) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:74:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L74) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log id=\"rate.c:", ids, "\" spec=\"beast.evolution.branchratemodel.RateStatistic\" branchratemodel=\"@RelaxedClock.c:", ids, "\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:87:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <logger id=\"treelog.t:", ids, "\" fileName=\"$(tree).trees\" logEvery=\"1000\" mode=\"tree\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:91:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L91) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log id=\"TreeWithMetaDataLogger.t:", ids, "\" spec=\"beast.evolution.tree.TreeWithMetaDataLogger\" ", "tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:93:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_loggers.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <log id=\"TreeWithMetaDataLogger.t:", ids, "\" spec=\"beast.evolution.tree.TreeWithMetaDataLogger\" branchratemodel=\"@RelaxedClock.c:", ids, "\" tree=\"@Tree.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:38:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"YuleBirthRateScaler.t:", ids, "\" spec=\"ScaleOperator\" parameter=\"@birthRate.t:", ids, "\" scaleFactor=\"0.75\" weight=\"3.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:43:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"", operator_id_pre, "TreeScaler.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:49:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"", operator_id_pre, "TreeRootScaler.t:",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:55:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <operator id=\"", operator_id_pre, "UniformOperator.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:60:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"", operator_id_pre, "SubtreeSlide.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:66:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L66) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <operator id=\"", operator_id_pre, "Narrow.t:", ids, "\" spec=\"Exchange\" tree=\"@Tree.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:73:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L73) *style:* **Lines should not be more than 80 characters.**
```r
  text <- c(text, paste0("    <operator id=\"", operator_id_pre, "WilsonBalding.t:", ids,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:79:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L79) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"KappaScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@kappa.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:81:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L81) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"FrequenciesExchanger.s:", ids, "\" spec=\"DeltaExchangeOperator\" delta=\"0.01\" weight=\"0.1\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:82:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:86:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L86) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"kappa1Scaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@kappa1.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:88:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"kappa2Scaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@kappa2.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:90:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"FrequenciesExchanger.s:", ids, "\" spec=\"DeltaExchangeOperator\" delta=\"0.01\" weight=\"0.1\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:91:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L91) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:95:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L95) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"RateACScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@rateAC.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:97:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L97) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"RateAGScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@rateAG.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:99:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L99) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"RateATScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@rateAT.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:101:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L101) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"RateCGScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@rateCG.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:103:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L103) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"RateGTScaler.s:", ids, "\" spec=\"ScaleOperator\" parameter=\"@rateGT.s:", ids, "\" scaleFactor=\"0.5\" weight=\"0.1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:105:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L105) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"FrequenciesExchanger.s:", ids, "\" spec=\"DeltaExchangeOperator\" delta=\"0.01\" weight=\"0.1\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:106:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L106) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter idref=\"freqParameter.s:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:127:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L127) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"popSizesScaler.t:", ids, "\" spec=\"ScaleOperator\" parameter=\"@bPopSizes.t:", ids, "\" scaleFactor=\"0.75\" weight=\"15.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:129:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L129) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"groupSizesDelta.t:", ids, "\" spec=\"DeltaExchangeOperator\" integer=\"true\" weight=\"6.0\">"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:130:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L130) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <intparameter idref=\"bGroupSizes.t:", ids, "\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:137:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L137) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"ucldStdevScaler.c:", ids, "\" spec=\"ScaleOperator\" parameter=\"@ucldStdev.c:", ids, "\" scaleFactor=\"0.5\" weight=\"3.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:139:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L139) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"CategoriesRandomWalk.c:", ids, "\" spec=\"IntRandomWalkOperator\" parameter=\"@rateCategories.c:", ids, "\" weight=\"10.0\" windowSize=\"1\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:141:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L141) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"CategoriesSwapOperator.c:", ids, "\" spec=\"SwapOperator\" intparameter=\"@rateCategories.c:", ids, "\" weight=\"10.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:143:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_operators.R#L143) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("    <operator id=\"CategoriesUniform.c:", ids, "\" spec=\"UniformOperator\" parameter=\"@rateCategories.c:", ids, "\" weight=\"10.0\"/>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:41:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"birthRate.t:", ids, "\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:43:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"BDBirthRate.t:", ids, "\" lower=\"0.0\" name=\"stateNode\" upper=\"10000.0\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:44:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"BDDeathRate.t:", ids, "\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.5</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:46:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"popSize.t:", ids, "\" name=\"stateNode\">0.3</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:48:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"bPopSizes.t:", ids, "\" dimension=\"5\" lower=\"0.0\" name=\"stateNode\" upper=\"380000.0\">380.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:49:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <stateNode id=\"bGroupSizes.t:", ids, "\" spec=\"parameter.IntegerParameter\" dimension=\"5\">1</stateNode>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:54:14:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L54) *warning:* **no visible global function definition for ‘get_kappa’**
```r
    kappa <- get_kappa(site_models)
             ^~~~~~~~~
```
[R/create_beast2_input_state.R:55:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"kappa.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">", kappa, "</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:56:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"freqParameter.s:", ids, "\" dimension=\"4\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:58:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L58) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"kappa1.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">2.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:59:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"kappa2.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">2.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:60:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"freqParameter.s:", ids, "\" dimension=\"4\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:62:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L62) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateAC.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:63:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L63) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateAG.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:64:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L64) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateAT.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:65:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateCG.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:66:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L66) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"rateGT.s:", ids, "\" lower=\"0.0\" name=\"stateNode\">1.0</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:67:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L67) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"freqParameter.s:", ids, "\" dimension=\"4\" lower=\"0.0\" name=\"stateNode\" upper=\"1.0\">0.25</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:72:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L72) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <parameter id=\"ucldStdev.c:", ids, "\" lower=\"0.0\" name=\"stateNode\">0.1</parameter>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:73:1:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_beast2_input_state.R#L73) *style:* **Lines should not be more than 80 characters.**
```r
    text <- c(text, paste0("        <stateNode id=\"rateCategories.c:", ids, "\" spec=\"parameter.IntegerParameter\" dimension=\"8\">1</stateNode>"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_clock_model.R:33:10:](https://github.com/richelbilderbeek/beastscriptr/blob/4d714e39111b0715967288327ab3762b511da0e6/R/create_clock_model.R#L33) *warning:* **no visible global function definition for ‘create_clock_model’**
```r
  return(create_clock_model(name = "relaxed_log_normal"))
         ^~~~~~~~~~~~~~~~~~
```


I meant the mirroring :)

On Tue, Oct 24, 2017, 10:49 AM Ittai Zeidman <notifications@github.com>
wrote:

> do you mean do the mirroring in this specific case?
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/bazelbuild/rules_scala/commit/f882de2cc0792f5bafdf70621ea759dd4a84d2a0#commitcomment-25152716>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ADjHfwD_Dgw4SsSDIOCA3md9eGyMEmmBks5svaStgaJpZM4QAMOy>
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![](https://github.trello.services/images/mini-trello-icon.png) [Prove we can may a call to the API with an access token](https://trello.com/c/UcvBrdfF/4-prove-we-can-may-a-call-to-the-api-with-an-access-token)


To be consistant you should probably write:
`pip install .` or `git clone [...] && pip install spam-classifier-python/`

Using both *requirements.txt* and *setup.py* is not that great I guess...


Ok! I'll change the file names and add that line to `Makefile`. Just one more question. Could you tell me more about the failure of `posix*.txt`? I haven't checked the validity of the entire file. For example, in `posix_fs.txt`, there is a struct stat whose definition is different from that in `sys/stat.h`.
Here's how the structure is defined in `sys/stat.h`:
```
struct stat {
	dev_t	  st_dev;		/* inode's device */
	mode_t	  st_mode;		/* inode protection mode */
	ino_t	  st_ino;		/* inode's number */
	nlink_t	  st_nlink;		/* number of hard links */
	uid_t	  st_uid;		/* user ID of the file's owner */
	gid_t	  st_gid;		/* group ID of the file's group */
	dev_t	  st_rdev;		/* device type */
#if (_POSIX_C_SOURCE - 0) >= 200809L || (_XOPEN_SOURCE - 0) >= 700 || \
    defined(_NETBSD_SOURCE)
	struct	  timespec st_atim;	/* time of last access */
	struct	  timespec st_mtim;	/* time of last data modification */
	struct	  timespec st_ctim;	/* time of last file status change */
	struct	  timespec st_birthtim;	/* time of creation */
#else
	time_t	  st_atime;		/* time of last access */
	long	  st_atimensec;		/* nsec of last access */
	time_t	  st_mtime;		/* time of last data modification */
	long	  st_mtimensec;		/* nsec of last data modification */
	time_t	  st_ctime;		/* time of last file status change */
	long	  st_ctimensec;		/* nsec of last file status change */
	time_t	  st_birthtime;		/* time of creation */
	long	  st_birthtimensec;	/* nsec of time of creation */
#endif
	off_t	  st_size;		/* file size, in bytes */
	blkcnt_t  st_blocks;		/* blocks allocated for file */
	blksize_t st_blksize;		/* optimal blocksize for I/O */
	uint32_t  st_flags;		/* user defined flags for file */
	uint32_t  st_gen;		/* file generation number */
	uint32_t  st_spare[2];
};
```


PENE


hola


Hola, probando el commit


how can i get lantern？


Using that, you should be able your package installed through:
```shell
$ pip freeze
numpy==1.13.3
scikit-learn==0.19.1
scipy==0.19.1
sklearn==0.0
spamclassifier-python==0.1a0
stemming==1.0.1
```


i have reacted in the comments to some of them just below then.


Using a Point here is not good code style, because you are storing 2 y positions, not an x or y, and later you have to do:

```
        int topY = persistentData.topAndBottomCrop.x;
```

which is confusing. Better to use a pair or struct or just 2 ints where the data structure matches the intent.


close #67


Basically, in consequences, I change the derivative of the quantity from + to 0 if it's magnitude reaches max as the derivative can no longer increase as it reached the max state and there can be no more volume/outflow. This is actually an overflow. Similar changes when volume/outflow reaches 0 the derivative can no longer be -.
In I+/I-/P+, adding the derivative condition to help the branching better to avoid over constraint by VCmax and VCzero.


This is a tool-o from this being a .js file, got a coffeescript version otw.


IMO, the commit message does not reflect what the patch changes. Doesn't it only apply to the root path '/'? Maybe you could clarify what the patch tries to fix. Does it try to prevent `//` paths?


modify


Done


Burde klasserne ikke starte med stort begyndelsesbogstav?


Awesome, thank you! :)
Hm `AtomicDouble` would be needed too, that's a Guava class that didn't render successfully.


Why? You haven't asked to apply migrations. For example, I want just to check if there are any migrations to be applied but not to apply them. In this case error messages is useless.


https://github.com/szdiy/duo/blob/frontend/.babelrc 主要是babel这里配了stage-2吧

vue-loader文档：
https://vue-loader.vuejs.org/zh-cn/features/es2015.html

现在习惯了写ES6了，简洁很多，而且webpack是标配，不用不舒服。


> Could you tell me more about the failure of posix*.txt?

What I tried to do is to put posix_mm/fs.txt into a posix dir and then do softlinks from linux/ and freebsd/ to them.

The problem is that while it is posix the definitions are not completely identical. I think the posix interfaces are mostly provided by libc, but not necessary by kernel. posix also does not specify e.g. order of fields in struct stat, but we need the exact order as expected by kernel (I did not investigate how bad is the difference between linux/freebsd/netbsd/darwin/akaros). Also there are lots of  extensions, like additional mmap/open/fcntl flags (and we currently produce an error when a flag is unsupported on all archs, because this usually means a misspelled flag name). Also this requires splitting closely related groups of syscalls, for example, there are read/pread that are posix, but linux also provides pread64 and readv (not sure which exactly are posix, but I noticed that freebsd does not provide all of linux variants).

In general, I think it is doable, but requires some chunk of careful design and work. I did not yet have time for this. But I understand that as we are adding freebsd/netbsd, then problem becomes worse.


Okay yeah maybe you're right. Local storage is closer to how cookies would behave...


Please add this change to npm as soon as possible 👍


@philmmanjaro I think it would be helpful to grant @ThanosApostolou direct boxit access.
Commits like this one here and others show how qualified his contributions are and he has shown a lot of diligence with all his contributions over time.


Erreur de ma part il était tard, j'ai du changer un while en for

Le 24 oct. 2017 10:49, "GabinFiquet" <notifications@github.com> a écrit :

> tu incrémente deux fois cardIndex ?
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/Nashunn/pokedeck/commit/62dc0c3e28839c730b80bc33e713851226191112#commitcomment-25152719>,
> or mute the thread
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> .
>


Here you introduced a new bug - you changed functionality. Instead showing to which booking you send a user, you are now showing from which booking user is coming.


In an hour, if it can be delayed )


you can use migrate/new for that.


property 應為 readonly，所以不該有 set


The only thing RBD specific here is the "rbd" backstore name, and corresponding device. IMO it'd make sense to have this exporter cover other (e.g. iblock) backstores, so that it's not dependent on the SUSE kernel (with the RBD backend). That way we could also continue to use it following tcmu-runner migration.


Не, я про конструкцию Assert,DoesNotThrow как таковую. Дефолтные значения я бы тоже не тестил, но тут я прежде всего на assert обратил внимание


As far as flags and syscalls are concerned, I've added and removed a few based on availability. What I haven't checked however is whether correct arguments are being passed or not.
Also, I've made the necessary change to Makefile and renamed two files in the latest commit.


there may be some stuff here
https://github.com/automenta/narchy/search?q=teavm&type=Commits&utf8=%E2%9C%93
https://github.com/automenta/spimedb/search?q=teavm&type=Commits&utf8=%E2%9C%93

in particular websockets stuff that didnt exist at the time in teavm
https://github.com/automenta/spimedb/commit/93cc982f6d31cacb9c5d23e29f93d54ac5b9c1a8#diff-4b45324bbb316af57a65ff46fce7e527R12

and some leaflets map extensions

PriBag is my port of CurveBag to TeaVM compatibility. in case you dont already have something like this
https://github.com/automenta/spimedb/commit/b457925d5cd75c8148d399bc4439c3a0cda58952#diff-1ba5580d84d27286d0fcfea172ef9cb4

what do you need atomic anything for its JS it should be single threaded unless you're using web workers then its message passing. look for MutableInteger MutableDouble etc from some apache lib they are plain number holders and can substitute for the Atomics


Tested adblock and could not reproduce errors people were seeing. Also checked query from ages ago from obsy and found behaviour not compromised. Happy for this one to go.

Pushed minor fix for Spectrum Analyser. If it doesn't get included in release no big deal.
Thanks Eric


Fixes #32


Indeed, that's a horrible practice. I think we could talk about the possibility to make "linking" to certain parts of the citation items configurable. Until that is done, you can simply use your modified citeproc-php. What do you think?


Fly Magi! Flyyyyy!


此处的 safe 变量是指什么？一直有疑惑，希望得到解答。我目前使用的是 egg 1.8.0 版本，该版本是否支持 safe


Feel free to send a pull request with this.


not really, you can combine them.


ah, brilliant!

M = hyperstream.channel_manager.memory <-- was using this channel with sphere connector, getting key error
S = hyperstream.channel_manager.sphere <-- switched to sphere specific channel, no error


List 屬於資料，不應該暴露出來，所以不該使用 interface


OK.


property 應該是唯讀
所以不能有 set


List 不該為 public, 要封裝在內部


See my comment in the jxmpp issue. This parsing here can only be a temporary workaround until jxmpp is fixed.


LDPC decoder


![](https://github.trello.services/images/mini-trello-icon.png) [Open last active playlist functionality](https://trello.com/c/Y3UvouHP/23-open-last-active-playlist-functionality)


Fixing vg module docstring. Option name is 'disktype'.


模板引擎自带的 safe filter，渲染出来的时候。

cc @jtyjty99999 csrf 的字符串会有特殊字符么?


![](https://github.trello.services/images/mini-trello-icon.png) [Fix shuffle bug](https://trello.com/c/NPcY2Lbw/45-fix-shuffle-bug)


Furthermore, this *is* LIO (the in-kernel SCSI target) specific, so I think it would make sense to include LIO or TCM in the subsystem name.


@bbolker
We already did receive the `weights` from `fr` using
`as.vector(model.weights(fr))` inside `glmmTMB()`.
Then why would we want to do
```
weights <- fr[["(weights)"]]
```
inside `mkTMBStruc()` ? I'm tempted to get rid of that line.


This line doesn't seem to work correctly for all possible occurences. For example "aufgehangen" does not suggest "aufgehängt", at least not on the website. Maybe the suggestion is buried too deep in the list?


Add some lines to check how pull request works


Updated in 9348e841011ac4150d7f30afe49695f63302a38b


這應該寫在 count 的  getter