[inst/extdata/test_retinas/3hgbqg/main.r:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L4) *style:* **Lines should not be more than 80 characters.**
```r
  LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/3hgbqg/main.r:4:3:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L4) *style:* **Variable or function name should be snake_case.**
```r
  LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
  ^~~~~~~~~~
```
[inst/extdata/test_retinas/3hgbqg/main.r:5:3:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L5) *style:* **Variable or function name should be snake_case.**
```r
  RESOLUTION_var <- 500 #Plot width in pixels
  ^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/3hgbqg/main.r:9:3:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L9) *style:* **Variable or function name should be snake_case.**
```r
  IJ <-data.frame(maxX = 1429,
  ^~
```
[inst/extdata/test_retinas/3hgbqg/main.r:9:6:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L9) *style:* **Put spaces around all infix operators.**
```r
  IJ <-data.frame(maxX = 1429,
     ^~~
```
[inst/extdata/test_retinas/3hgbqg/main.r:13:33:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                  deltaX = (1429-108)/21,
                               ~^~
```
[inst/extdata/test_retinas/3hgbqg/main.r:13:38:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                  deltaX = (1429-108)/21,
                                    ~^~
```
[inst/extdata/test_retinas/3hgbqg/main.r:14:32:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L14) *style:* **Put spaces around all infix operators.**
```r
                  deltaY = (989-85)/14)
                              ~^~
```
[inst/extdata/test_retinas/3hgbqg/main.r:14:36:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L14) *style:* **Put spaces around all infix operators.**
```r
                  deltaY = (989-85)/14)
                                  ~^~
```
[inst/extdata/test_retinas/3hgbqg/main.r:26:23:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L26) *style:* **Commas should never have a space before.**
```r
          height = 30 ,# height of the counting frame in microns
                     ~^
```
[inst/extdata/test_retinas/3hgbqg/main.r:26:24:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L26) *style:* **Commas should always have a space after.**
```r
          height = 30 ,# height of the counting frame in microns
                       ^
```
[inst/extdata/test_retinas/3hgbqg/main.r:31:30:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L31) *style:* **Commas should never have a space before.**
```r
          extrapolate = TRUE ,          #Predicts densities to the equator.
                            ~^
```
[inst/extdata/test_retinas/3hgbqg/main.r:33:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L33) *style:* **Lines should not be more than 80 characters.**
```r
          rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/3hgbqg/main.r:34:24:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L34) *style:* **Put spaces around all infix operators.**
```r
          plot_suppress=TRUE,
                      ~^~
```
[inst/extdata/test_retinas/3hgbqg/main.r:41:3:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/3hgbqg/main.r#L41) *warning:* **no visible global function definition for ‘retinaplot’**
```r
  retinaplot(my_retina)
  ^~~~~~~~~~
```
[inst/extdata/test_retinas/40oik5/main.r:2:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L2) *style:* **Lines should not be more than 80 characters.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/40oik5/main.r:2:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L2) *style:* **Variable or function name should be snake_case.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~
```
[inst/extdata/test_retinas/40oik5/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L3) *style:* **Variable or function name should be snake_case.**
```r
RESOLUTION_var <- 500 #Plot width in pixels
^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/40oik5/main.r:5:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L5) *style:* **Variable or function name should be snake_case.**
```r
IJ <-data.frame(maxX = 944,
^~
```
[inst/extdata/test_retinas/40oik5/main.r:5:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L5) *style:* **Put spaces around all infix operators.**
```r
IJ <-data.frame(maxX = 944,
   ^~~
```
[inst/extdata/test_retinas/40oik5/main.r:21:15:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L21) *style:* **Commas should never have a space before.**
```r
  height = 25 ,# height of the counting frame in microns
             ~^
```
[inst/extdata/test_retinas/40oik5/main.r:21:16:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L21) *style:* **Commas should always have a space after.**
```r
  height = 25 ,# height of the counting frame in microns
               ^
```
[inst/extdata/test_retinas/40oik5/main.r:26:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L26) *style:* **Commas should never have a space before.**
```r
  extrapolate = TRUE ,          #Predicts densities to the equator.
                    ~^
```
[inst/extdata/test_retinas/40oik5/main.r:28:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L28) *style:* **Lines should not be more than 80 characters.**
```r
  rotation_ccw = 0, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/40oik5/main.r:29:16:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L29) *style:* **Put spaces around all infix operators.**
```r
  plot_suppress=TRUE,
              ~^~
```
[inst/extdata/test_retinas/40oik5/main.r:34:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L34) *warning:* **no visible global function definition for ‘retinaplot’**
```r
retinaplot(my_retina, rotation=115, col_breaks_source = c(0, 35000))
^~~~~~~~~~
```
[inst/extdata/test_retinas/40oik5/main.r:34:31:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/40oik5/main.r#L34) *style:* **Put spaces around all infix operators.**
```r
retinaplot(my_retina, rotation=115, col_breaks_source = c(0, 35000))
                             ~^~
```
[inst/extdata/test_retinas/8pm223/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L3) *style:* **Lines should not be more than 80 characters.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/8pm223/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L3) *style:* **Variable or function name should be snake_case.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~
```
[inst/extdata/test_retinas/8pm223/main.r:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L4) *style:* **Variable or function name should be snake_case.**
```r
RESOLUTION_var <- 500 #Plot width in pixels
^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/8pm223/main.r:6:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L6) *style:* **Variable or function name should be snake_case.**
```r
IJ <-data.frame(maxX = 981,
^~
```
[inst/extdata/test_retinas/8pm223/main.r:6:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L6) *style:* **Put spaces around all infix operators.**
```r
IJ <-data.frame(maxX = 981,
   ^~~
```
[inst/extdata/test_retinas/8pm223/main.r:22:15:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L22) *style:* **Commas should never have a space before.**
```r
  height = 25 ,# height of the counting frame in microns
             ~^
```
[inst/extdata/test_retinas/8pm223/main.r:22:16:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L22) *style:* **Commas should always have a space after.**
```r
  height = 25 ,# height of the counting frame in microns
               ^
```
[inst/extdata/test_retinas/8pm223/main.r:27:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L27) *style:* **Commas should never have a space before.**
```r
  extrapolate = TRUE ,          #Predicts densities to the equator.
                    ~^
```
[inst/extdata/test_retinas/8pm223/main.r:29:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L29) *style:* **Lines should not be more than 80 characters.**
```r
  rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/8pm223/main.r:30:16:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L30) *style:* **Put spaces around all infix operators.**
```r
  plot_suppress=TRUE,
              ~^~
```
[inst/extdata/test_retinas/8pm223/main.r:34:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/8pm223/main.r#L34) *warning:* **no visible global function definition for ‘retinaplot’**
```r
retinaplot(my_retina)
^~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L3) *style:* **Variable or function name should be snake_case.**
```r
LAMBDA_var <- 0.1 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L4) *style:* **Variable or function name should be snake_case.**
```r
RESOLUTION_var <- 500 #Plot width in pixels
^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:8:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L8) *style:* **Variable or function name should be snake_case.**
```r
IJ <-data.frame(maxX = 1210,
^~
```
[inst/extdata/test_retinas/bjii4t/main.r:8:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L8) *style:* **Put spaces around all infix operators.**
```r
IJ <-data.frame(maxX = 1210,
   ^~~
```
[inst/extdata/test_retinas/bjii4t/main.r:12:31:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1210-72)/20,
                             ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:12:35:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1210-72)/20,
                                 ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:13:30:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (928-46)/15)
                            ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:13:34:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (928-46)/15)
                                ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:26:21:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L26) *style:* **Commas should never have a space before.**
```r
        height = 45 ,# height of the counting frame in microns
                   ~^
```
[inst/extdata/test_retinas/bjii4t/main.r:26:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L26) *style:* **Commas should always have a space after.**
```r
        height = 45 ,# height of the counting frame in microns
                     ^
```
[inst/extdata/test_retinas/bjii4t/main.r:31:28:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L31) *style:* **Commas should never have a space before.**
```r
        extrapolate = TRUE ,          #Predicts densities to the equator.
                          ~^
```
[inst/extdata/test_retinas/bjii4t/main.r:33:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L33) *style:* **Lines should not be more than 80 characters.**
```r
        rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:34:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L34) *style:* **Put spaces around all infix operators.**
```r
        plot_suppress=TRUE,
                    ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:41:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L41) *warning:* **no visible global function definition for ‘retinaplot’**
```r
retinaplot(my_retina)
^~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:43:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L43) *style:* **Variable or function name should be snake_case.**
```r
findPeak <- function(my_retina){
^~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:44:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L44) *style:* **Use spaces to indent, not tabs.**
```r
	coord <- my_retina$trimmed_data
^
```
[inst/extdata/test_retinas/bjii4t/main.r:45:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L45) *style:* **Use spaces to indent, not tabs.**
```r
	peak_temp <- coord[which.max(coord$z),]
^
```
[inst/extdata/test_retinas/bjii4t/main.r:45:40:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L45) *style:* **Commas should always have a space after.**
```r
	peak_temp <- coord[which.max(coord$z),]
                                       ^
```
[inst/extdata/test_retinas/bjii4t/main.r:46:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Lines should not be more than 80 characters.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:46:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Use spaces to indent, not tabs.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
^
```
[inst/extdata/test_retinas/bjii4t/main.r:46:29:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Put spaces around all infix operators.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
                           ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:46:45:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Commas should always have a space after.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
                                            ^
```
[inst/extdata/test_retinas/bjii4t/main.r:46:59:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Put spaces around all infix operators.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
                                                         ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:46:71:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Commas should always have a space after.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
                                                                      ^
```
[inst/extdata/test_retinas/bjii4t/main.r:46:79:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Put spaces around all infix operators.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
                                                                             ~^~
```
[inst/extdata/test_retinas/bjii4t/main.r:46:91:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L46) *style:* **Commas should always have a space after.**
```r
	peak <- data.frame(latitude=abs(peak_temp[,1]), longitude=peak_temp[,2], peak=peak_temp[,3])
                                                                                ^
```
[inst/extdata/test_retinas/bjii4t/main.r:47:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L47) *style:* **Use spaces to indent, not tabs.**
```r
	return(peak)
^
```
[inst/extdata/test_retinas/bjii4t/main.r:48:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L48) *style:* **Use spaces to indent, not tabs.**
```r
	}
^
```
[inst/extdata/test_retinas/bjii4t/main.r:53:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L53) *style:* **Commented code should be removed.**
```r
  #lambda=0.001
   ^~~~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:54:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L54) *style:* **Commented code should be removed.**
```r
  #polynomial_m=2
   ^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/bjii4t/main.r:55:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/bjii4t/main.r#L55) *style:* **Commented code should be removed.**
```r
  #rotation=30
   ^~~~~~~~~~~
```
[inst/extdata/test_retinas/gv3igs/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L3) *style:* **Lines should not be more than 80 characters.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/gv3igs/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L3) *style:* **Variable or function name should be snake_case.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~
```
[inst/extdata/test_retinas/gv3igs/main.r:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L4) *style:* **Variable or function name should be snake_case.**
```r
RESOLUTION_var <- 500 #Plot width in pixels
^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/gv3igs/main.r:8:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L8) *style:* **Variable or function name should be snake_case.**
```r
IJ <-data.frame(maxX = 1084,
^~
```
[inst/extdata/test_retinas/gv3igs/main.r:8:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L8) *style:* **Put spaces around all infix operators.**
```r
IJ <-data.frame(maxX = 1084,
   ^~~
```
[inst/extdata/test_retinas/gv3igs/main.r:12:31:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1084-100)/21,
                             ~^~
```
[inst/extdata/test_retinas/gv3igs/main.r:12:36:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1084-100)/21,
                                  ~^~
```
[inst/extdata/test_retinas/gv3igs/main.r:13:31:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (1022-36)/14)
                             ~^~
```
[inst/extdata/test_retinas/gv3igs/main.r:13:35:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (1022-36)/14)
                                 ~^~
```
[inst/extdata/test_retinas/gv3igs/main.r:26:21:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L26) *style:* **Commas should never have a space before.**
```r
        height = 35 ,# height of the counting frame in microns
                   ~^
```
[inst/extdata/test_retinas/gv3igs/main.r:26:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L26) *style:* **Commas should always have a space after.**
```r
        height = 35 ,# height of the counting frame in microns
                     ^
```
[inst/extdata/test_retinas/gv3igs/main.r:31:28:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L31) *style:* **Commas should never have a space before.**
```r
        extrapolate = TRUE ,          #Predicts densities to the equator.
                          ~^
```
[inst/extdata/test_retinas/gv3igs/main.r:33:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L33) *style:* **Lines should not be more than 80 characters.**
```r
        rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/gv3igs/main.r:34:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L34) *style:* **Put spaces around all infix operators.**
```r
        plot_suppress=TRUE,
                    ~^~
```
[inst/extdata/test_retinas/gv3igs/main.r:41:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L41) *warning:* **no visible global function definition for ‘retinaplot’**
```r
retinaplot(my_retina,rotation=270)
^~~~~~~~~~
```
[inst/extdata/test_retinas/gv3igs/main.r:41:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L41) *style:* **Commas should always have a space after.**
```r
retinaplot(my_retina,rotation=270)
                     ^
```
[inst/extdata/test_retinas/gv3igs/main.r:41:30:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/gv3igs/main.r#L41) *style:* **Put spaces around all infix operators.**
```r
retinaplot(my_retina,rotation=270)
                            ~^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L3) *style:* **Lines should not be more than 80 characters.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/jhvbwt/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L3) *style:* **Variable or function name should be snake_case.**
```r
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~
```
[inst/extdata/test_retinas/jhvbwt/main.r:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L4) *style:* **Variable or function name should be snake_case.**
```r
RESOLUTION_var <- 500 #Plot width in pixels
^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/jhvbwt/main.r:8:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L8) *style:* **Variable or function name should be snake_case.**
```r
IJ <-data.frame(maxX = 1189,
^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:8:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L8) *style:* **Put spaces around all infix operators.**
```r
IJ <-data.frame(maxX = 1189,
   ^~~
```
[inst/extdata/test_retinas/jhvbwt/main.r:12:31:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1189-26)/19,
                             ~^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:12:35:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1189-26)/19,
                                 ~^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:13:30:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (986-81)/15)
                            ~^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:13:34:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (986-81)/15)
                                ~^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:26:21:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L26) *style:* **Commas should never have a space before.**
```r
        height = 25 ,# height of the counting frame in microns
                   ~^
```
[inst/extdata/test_retinas/jhvbwt/main.r:26:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L26) *style:* **Commas should always have a space after.**
```r
        height = 25 ,# height of the counting frame in microns
                     ^
```
[inst/extdata/test_retinas/jhvbwt/main.r:31:28:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L31) *style:* **Commas should never have a space before.**
```r
        extrapolate = TRUE ,          #Predicts densities to the equator.
                          ~^
```
[inst/extdata/test_retinas/jhvbwt/main.r:33:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L33) *style:* **Lines should not be more than 80 characters.**
```r
        rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/jhvbwt/main.r:34:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L34) *style:* **Put spaces around all infix operators.**
```r
        plot_suppress=TRUE,
                    ~^~
```
[inst/extdata/test_retinas/jhvbwt/main.r:41:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/jhvbwt/main.r#L41) *warning:* **no visible global function definition for ‘retinaplot’**
```r
retinaplot(my_retina)
^~~~~~~~~~
```
[inst/extdata/test_retinas/raxp91/main.r:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L3) *style:* **Variable or function name should be snake_case.**
```r
LAMBDA_var <- 0.1 #Thin plate spline smoothing. Lambda=0 would be interpolation.
^~~~~~~~~~
```
[inst/extdata/test_retinas/raxp91/main.r:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L4) *style:* **Variable or function name should be snake_case.**
```r
RESOLUTION_var <- 500 #Plot width in pixels
^~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/raxp91/main.r:8:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L8) *style:* **Variable or function name should be snake_case.**
```r
IJ <-data.frame(maxX = 1016,
^~
```
[inst/extdata/test_retinas/raxp91/main.r:8:4:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L8) *style:* **Put spaces around all infix operators.**
```r
IJ <-data.frame(maxX = 1016,
   ^~~
```
[inst/extdata/test_retinas/raxp91/main.r:12:31:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1016-25)/18,
                             ~^~
```
[inst/extdata/test_retinas/raxp91/main.r:12:35:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L12) *style:* **Put spaces around all infix operators.**
```r
                deltaX = (1016-25)/18,
                                 ~^~
```
[inst/extdata/test_retinas/raxp91/main.r:13:30:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (923-48)/17)
                            ~^~
```
[inst/extdata/test_retinas/raxp91/main.r:13:34:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L13) *style:* **Put spaces around all infix operators.**
```r
                deltaY = (923-48)/17)
                                ~^~
```
[inst/extdata/test_retinas/raxp91/main.r:26:21:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L26) *style:* **Commas should never have a space before.**
```r
        height = 45 ,# height of the counting frame in microns
                   ~^
```
[inst/extdata/test_retinas/raxp91/main.r:26:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L26) *style:* **Commas should always have a space after.**
```r
        height = 45 ,# height of the counting frame in microns
                     ^
```
[inst/extdata/test_retinas/raxp91/main.r:31:28:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L31) *style:* **Commas should never have a space before.**
```r
        extrapolate = TRUE ,          #Predicts densities to the equator.
                          ~^
```
[inst/extdata/test_retinas/raxp91/main.r:33:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L33) *style:* **Lines should not be more than 80 characters.**
```r
        rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/extdata/test_retinas/raxp91/main.r:34:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L34) *style:* **Put spaces around all infix operators.**
```r
        plot_suppress=TRUE,
                    ~^~
```
[inst/extdata/test_retinas/raxp91/main.r:41:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L41) *warning:* **no visible global function definition for ‘retinaplot’**
```r
retinaplot(my_retina, lambda=0.001, polynomial_m=	2, rotation=30)
^~~~~~~~~~
```
[inst/extdata/test_retinas/raxp91/main.r:41:29:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L41) *style:* **Put spaces around all infix operators.**
```r
retinaplot(my_retina, lambda=0.001, polynomial_m=	2, rotation=30)
                           ~^~
```
[inst/extdata/test_retinas/raxp91/main.r:41:49:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L41) *style:* **Put spaces around all infix operators.**
```r
retinaplot(my_retina, lambda=0.001, polynomial_m=	2, rotation=30)
                                               ~^
```
[inst/extdata/test_retinas/raxp91/main.r:41:62:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/inst/extdata/test_retinas/raxp91/main.r#L41) *style:* **Put spaces around all infix operators.**
```r
retinaplot(my_retina, lambda=0.001, polynomial_m=	2, rotation=30)
                                                            ~^~
```
[R/composite.R:2:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
##' @param retina_list A list containing retina objects, with names(retina_list) all defined.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:6:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
##' @param plot Logical, by default false, but when true it will output the plot where the first element in the list is fixed.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:7:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
##' @param ... Arguments passed from other functions. You can access the thin plate spline interpolator here.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:8:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
##' @return composite_mat Matrix of the composite retina, where the first element of the retina list is fixed.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:11:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
vector_retina_composite <- function(retina_list, spin_spatial_res = 128, plot_spatial_res = 512,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:11:97:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
vector_retina_composite <- function(retina_list, spin_spatial_res = 128, plot_spatial_res = 512,
                                                                                ^
```
[R/composite.R:14:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L14) *style:* **Lines should not be more than 80 characters.**
```r
        rotation_degree_list <- compute_rotation_matrix(retina_list, spatial_res = spin_spatial_res,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:14:101:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
        rotation_degree_list <- compute_rotation_matrix(retina_list, spatial_res = spin_spatial_res,
                                                                                ^
```
[R/composite.R:19:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L19) *style:* **Lines should not be more than 80 characters.**
```r
    sum <- map_vec_sum(retina_list, rotation_degree_list, spatial_res = plot_spatial_res)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:19:12:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L19) *warning:* **no visible global function definition for ‘map_vec_sum’**
```r
    sum <- map_vec_sum(retina_list, rotation_degree_list, spatial_res = plot_spatial_res)
           ^~~~~~~~~~~
```
[R/composite.R:20:25:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L20) *style:* **Put spaces around all infix operators.**
```r
    composite_mat <- sum/n  #get the average
                       ~^~
```
[R/composite.R:21:14:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L21) *style:* **Trailing whitespace is superfluous.**
```r
    if (plot)
             ^
```
[R/composite.R:22:9:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L22) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        {
        ^
```
[R/composite.R:25:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L25) *style:* **Lines should not be more than 80 characters.**
```r
            plot_from_MAT(MATRIX = composite_mat, extrapolate = TRUE, spatial_res = plot_spatial_res,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:25:102:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L25) *style:* **Trailing whitespace is superfluous.**
```r
            plot_from_MAT(MATRIX = composite_mat, extrapolate = TRUE, spatial_res = plot_spatial_res,
                                                                                ^
```
[R/composite.R:26:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L26) *style:* **Lines should not be more than 80 characters.**
```r
                col_levels = 50, contour_levels = 20, contour_breaks_source = c(min(composite_mat),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:26:100:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L26) *style:* **Trailing whitespace is superfluous.**
```r
                col_levels = 50, contour_levels = 20, contour_breaks_source = c(min(composite_mat),
                                                                                ^
```
[R/composite.R:27:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L27) *style:* **Lines should not be more than 80 characters.**
```r
                  max(composite_mat)), col_breaks_source = c(min(composite_mat),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:27:81:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
                  max(composite_mat)), col_breaks_source = c(min(composite_mat),
                                                                                ^
```
[R/composite.R:28:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
                  max(composite_mat)), z1 = Pmol_753$azimuthal_data.datapoints[[1]]$z,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:28:87:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
                  max(composite_mat)), z1 = Pmol_753$azimuthal_data.datapoints[[1]]$z,
                                                                                ^
```
[R/composite.R:35:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L35) *style:* **Lines should not be more than 80 characters.**
```r
##' @param retina_list A list containing retina objects, with names(retina_list) all defined.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:36:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
##' @param rotation_indices Each value in this vector will correspond to the amount of rotation applied to each retina in the list.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:37:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
##' @param ... Arguments passed from other functions. You can access the thin plate spline interpolator here.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:38:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
##' @return sum_mat The sum of all retina objects in the list, with respect to the rotation indices.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:41:16:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L41) *warning:* **no visible global function definition for ‘mat_from_ret_obj’**
```r
    sum_mat <- mat_from_ret_obj(retina_list[[1]], rotation = 0, ...)
               ^~~~~~~~~~~~~~~~
```
[R/composite.R:44:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
        sum_mat <- sum_mat + mat_from_ret_obj(retina_list[[i]], rotation_indices[i],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/composite.R:44:85:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/composite.R#L44) *style:* **Trailing whitespace is superfluous.**
```r
        sum_mat <- sum_mat + mat_from_ret_obj(retina_list[[i]], rotation_indices[i],
                                                                                ^
```
[R/matrix_retobj.R:3:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L3) *style:* **Lines should not be more than 80 characters.**
```r
##' You can decide how much to rotate the retina before returning the matrix. You can also pass arguments to the polar plotter.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:6:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
##' @param n the number by which to divide the matrix by. Useful when generating partial averages.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:7:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
##' @param reflect logical, by default it is TRUE, in order to view the retina from outside the eye (rather than from within.)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:12:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
mat_from_ret_obj <- function(retina_object, rotation = 0, n = 1, reflect = TRUE,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:12:81:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
mat_from_ret_obj <- function(retina_object, rotation = 0, n = 1, reflect = TRUE,
                                                                                ^
```
[R/matrix_retobj.R:17:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L17) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/matrix_retobj.R:20:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
    az <- mapproject(x = retina_object$trimmed_data[, 2], retina_object$trimmed_data[,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:20:87:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L20) *style:* **Trailing whitespace is superfluous.**
```r
    az <- mapproject(x = retina_object$trimmed_data[, 2], retina_object$trimmed_data[,
                                                                                ^
```
[R/matrix_retobj.R:25:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L25) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/matrix_retobj.R:27:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L27) *style:* **Lines should not be more than 80 characters.**
```r
    map2fit <- fit_plot_azimuthal(x2, y2, z2, plot_suppress = TRUE, extrapolate = TRUE,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:27:88:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
    map2fit <- fit_plot_azimuthal(x2, y2, z2, plot_suppress = TRUE, extrapolate = TRUE,
                                                                                ^
```
[R/matrix_retobj.R:28:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
        outer.radius = pi/2, falciform_coords = retina_object$azimuthal_data.falciform[[1]],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/matrix_retobj.R:28:26:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L28) *style:* **Put spaces around all infix operators.**
```r
        outer.radius = pi/2, falciform_coords = retina_object$azimuthal_data.falciform[[1]],
                        ~^~
```
[R/matrix_retobj.R:28:93:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
        outer.radius = pi/2, falciform_coords = retina_object$azimuthal_data.falciform[[1]],
                                                                                ^
```
[R/matrix_retobj.R:30:5:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L30) *style:* **Variable or function name should be snake_case.**
```r
    MAT <- map2fit[[2]]$z
    ^~~
```
[R/matrix_retobj.R:32:15:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/matrix_retobj.R#L32) *style:* **Put spaces around all infix operators.**
```r
    return(MAT/n)
             ~^~
```
[R/plotting_functions.R:4:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
##' Shows a visualization of the outline, as well as the location of each datapoint so the user can identify where the tears are.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:7:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
##' @param path_to_retina_data_folder The path to the folder that contains the outline.roi file.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:8:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
##' @return roi_coordinates XY vals of pixel coordinates of the outline points, in order.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:11:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
	roi_object <- RImageJROI::read.ijroi(file.path(path_to_retina_data_folder, "outline.roi"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:11:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L11) *style:* **Use spaces to indent, not tabs.**
```r
	roi_object <- RImageJROI::read.ijroi(file.path(path_to_retina_data_folder, "outline.roi"))
^
```
[R/plotting_functions.R:14:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L14) *style:* **Use spaces to indent, not tabs.**
```r
		## ImageJ ROI format plots has the coordinate (0, 0) in the top
^~
```
[R/plotting_functions.R:15:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L15) *style:* **Use spaces to indent, not tabs.**
```r
		  ## left.  We have the coordinate (0, 0) in the bottom left. We need
^~
```
[R/plotting_functions.R:16:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L16) *style:* **Use spaces to indent, not tabs.**
```r
		  ## to transform P so that the outline appears in the correct
^~
```
[R/plotting_functions.R:17:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L17) *style:* **Use spaces to indent, not tabs.**
```r
		  ## orientation.
^~
```
[R/plotting_functions.R:18:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L18) *style:* **Use spaces to indent, not tabs.**
```r
			im <- NULL
^~~
```
[R/plotting_functions.R:19:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L19) *style:* **Use spaces to indent, not tabs.**
```r
		  roi_XY_coords <- roi_object$coords
^~
```
[R/plotting_functions.R:19:5:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L19) *style:* **Variable or function name should be snake_case.**
```r
		  roi_XY_coords <- roi_object$coords
    ^~~~~~~~~~~~~
```
[R/plotting_functions.R:20:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L20) *style:* **Use spaces to indent, not tabs.**
```r
		  offset <- ifelse(is.null(im), max(roi_XY_coords[,2]), nrow(im))
^~
```
[R/plotting_functions.R:20:54:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L20) *style:* **Commas should always have a space after.**
```r
		  offset <- ifelse(is.null(im), max(roi_XY_coords[,2]), nrow(im))
                                                     ^
```
[R/plotting_functions.R:21:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L21) *style:* **Use spaces to indent, not tabs.**
```r
		  roi_XY_coords[,2] <- offset - roi_XY_coords[,2]
^~
```
[R/plotting_functions.R:21:20:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L21) *style:* **Commas should always have a space after.**
```r
		  roi_XY_coords[,2] <- offset - roi_XY_coords[,2]
                   ^
```
[R/plotting_functions.R:21:50:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L21) *style:* **Commas should always have a space after.**
```r
		  roi_XY_coords[,2] <- offset - roi_XY_coords[,2]
                                                 ^
```
[R/plotting_functions.R:24:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:24:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Use spaces to indent, not tabs.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
^
```
[R/plotting_functions.R:24:26:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Put spaces around all infix operators.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                        ~^~
```
[R/plotting_functions.R:24:35:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Put spaces around all infix operators.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                 ~^~
```
[R/plotting_functions.R:24:36:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Only use double-quotes.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                   ^~~~~~~~~
```
[R/plotting_functions.R:24:50:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Put spaces around all infix operators.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                                ~^~
```
[R/plotting_functions.R:24:58:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Put spaces around all infix operators.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                                        ~^~
```
[R/plotting_functions.R:24:59:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Only use double-quotes.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                                          ^~~~~~~~~~
```
[R/plotting_functions.R:24:75:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Put spaces around all infix operators.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                                                         ~^~
```
[R/plotting_functions.R:24:76:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L24) *style:* **Only use double-quotes.**
```r
	plot(roi_XY_coords, type="l", col='#d3d3d3', asp=1, xlab='X Pixels', ylab='Y Pixels');
                                                                           ^~~~~~~~~~
```
[R/plotting_functions.R:25:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Lines should not be more than 80 characters.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:25:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Use spaces to indent, not tabs.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
^
```
[R/plotting_functions.R:25:22:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Commas should always have a space after.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
                     ^
```
[R/plotting_functions.R:25:25:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Commas should always have a space after.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
                        ^
```
[R/plotting_functions.R:25:40:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Commas should always have a space after.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
                                       ^
```
[R/plotting_functions.R:25:50:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Put spaces around all infix operators.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
                                                ~^~
```
[R/plotting_functions.R:25:75:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Commas should always have a space after.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
                                                                          ^
```
[R/plotting_functions.R:25:83:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L25) *style:* **Put spaces around all infix operators.**
```r
	text(roi_XY_coords[,1],roi_XY_coords[,2], labels=1:length(roi_XY_coords[,1]), cex=0.5)
                                                                                ~^~
```
[R/plotting_functions.R:26:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L26) *style:* **Lines should not be more than 80 characters.**
```r
 	message('If you are getting this message, you are using a special feature. Contact me at brian.cohn@usc.edu and I will happily teach you how to use it.')
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting_functions.R:26:1:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L26) *style:* **Use spaces to indent, not tabs.**
```r
 	message('If you are getting this message, you are using a special feature. Contact me at brian.cohn@usc.edu and I will happily teach you how to use it.')
^~
```
[R/plotting_functions.R:26:11:](https://github.com/bc/retina/blob/0a7d7c0d4c8b7c5315eebfefb2fb54dea3acccea/R/plotting_functions.R#L26) *style:* **Only use double-quotes.**
```r
 	message('If you are getting this message, you are using a special feature. Contact me at brian.cohn@usc.edu and I will happily teach you how to use it.')
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Style wasn't being used and fixing it didn't make things better.


Do you think Github is some kind of democracy or something? There's no "freedom of speech" here and "censorship" is completely legal. Github is a private company whose management has the right to do whatever it wants and sell out to whomever it wants. Likewise you have the right to move to Gitlab or somewhere else.


@andreufont @julienguy  Is it ok to save the dla in a separate file, or should I add it to the metadata?


Created multidev environment [sfgov#ci-290](https://dashboard.pantheon.io/sites/91d50373-c4cf-40e4-a646-cb73e16a140c#ci-290).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-290-sfgov.pantheonsite.io/)


using `library(tidyverse)` and viridis introduce a new dependency in animint2, which I think should be avoided.

instead, I would suggest simply using one of the other data sets which are already included in animint2 for this test.


:D


Lab1-Part5: My finding throughout this lab were very interesting. It certainly tested my abilities. First off setting up the lab2 was very detailed and I had to go through it a couple times, I started to use the actual Windows command prompt, instead on gitBash. The second part of the lab, having to set up the actual code was the biggest part. I had to look back in my personal memory of the things I learned from COMP 170. However, when it was all said and done, testing the fizzBuzz part wasn't too bad. I found that there are many different ways to go about doing it, and that is what was the most difficult task; committing to one way of coding. I would be half way through and started to remember other ways of solving the problem, but I had to keep myself on track. The most challenging code was for sure the array and array list part. Overall my finding were that of a lot of trial and error, and just sitting down to test different methods and then using them in all the other classes.


other comment


This question is related to https://github.com/desihub/desisim/issues/290.  In general, I think these kinds of properties (e.g., for DLAs) should be in the same file as the high-level metadata but in a new, dedicated HDU.


4.go 966 c7
Ignoring exception in on_message
Traceback (most recent call last):
  File "/home/pi/.local/lib/python3.5/site-packages/discord/client.py", line 224, in _run_event
    yield from coro(*args, **kwargs)
  File "/home/pi/Documents/FourBot/FourBotCode/Code.py", line 24, in on_message
    await cmds.process(msg, client)
  File "/home/pi/Documents/FourBot/FourBotCode/cmds.py", line 224, in process
    + "```")
  File "/home/pi/Documents/FourBot/FourBotCode/Go.py", line 52, in printboard
    boardcopy = self.placedown(boardcopy, point, "+")
  File "/home/pi/Documents/FourBot/FourBotCode/Go.py", line 89, in placedown
    color = self.getcolor(coords, theboard)
  File "/home/pi/Documents/FourBot/FourBotCode/Go.py", line 84, in getcolor
    return board[coords[1]][coords[0]]
TypeError: 'bool' object is not subscriptable


checkio添加了checkio中学习进度及相关实现代码


IBM Cloud [toolchain](https://console.ng.bluemix.net/devops/toolchains/c5622591-fa58-4c17-b87c-7982a32e91de?env_id=ibm%3Ayp%3Aus-south "db-ms-tc"): [Delivery Pipeline](https://console.ng.bluemix.net/devops/pipelines/fade6046-f884-4259-82c6-d22fb295d307?env_id=ibm%3Ayp%3Aus-south "db-ms-pipeline") deployed [t-school-microservice](https://github.com/donbr/t-school-microservice/releases/tag/deploy-ibm-yp-us-south-branson-ibm-dev-20180607-011606 "deploy-ibm-yp-us-south-branson-ibm-dev-20180607-011606") to [dev](https://console.bluemix.net/apps/4ede270c-0082-464f-9c59-016b59d9ad94?env_id=ibm:yp:us-south "ibm:yp:us-south:branson-ibm:dev"), including this commit


this test is missing expectations! expect_* lines are what actually check that what you computed is what you expect it to be.

please add `expect_equal` lines which demonstrate what you expect (e.g stroke-opacity style should be equal to what you specified for alpha_stroke parameter)

for example here is an existing test where we check the opacity https://github.com/tdhock/animint2/blob/master/tests/testthat/test-renderer1-url-fragment.R#L21


Could save some gas by hard-coding the constant like zeppelin does: https://github.com/OpenZeppelin/openzeppelin-solidity/blob/master/contracts/token/ERC721/ERC721BasicToken.sol#L19


Build version: __`0.10.0-master.134`__ :crossed_fingers: [`master`](https://github.com/streamich/ci-scripts/tree/master) on [*CircleCI*](https://circleci.com/gh/streamich/ci-scripts/134) :tada:


delete


Great find! Looks like I need to update my test. Sorry it took me so long to respond I was on a flight from LAX to the east coast. I’ll approve the PR, looks like the new version of ScriptAnalyzer found some issues to other parts of my code.

Thanks again! Sorry for any trouble.


I've just put the sodium library there for future use. Also, many swing tools are being deleted. mars-sim won't run.


That is correct. You will want to follow the instructions in the readme very similar to the HTML and CSS project you should have previously done.


Maybe it's too blue now? With everything being a link, it can get to a point where it's hard to know what is which link


05/31(목) 업데이트 내용 안내 - 베르니케의 파편/자원 쟁탈전 개선
[http://tos.nexon.com/news/update/view.aspx?n4ArticleSN=1092](url)


Looks good.  Merging pull request with Master


06/01(금) 오후 3시 51분 무점검 패치 안내
[http://tos.nexon.com/news/tosnotice/view.aspx?n4ArticleSN=1095](url)


생성자를 이렇게 private 으로 선언하면 객체 생성을 막는 효과가 있어, 불필요한 메모리를 낭비를 막을 수 있음. 물론 안해도 되지만, 해 주는 것이 좋음.(권장)


어떤 변화가 있다는 거죠?


作为 模板 demo ，建议名称直接用 getList 会直观点


Is something wrong with the `systemd` approach?  I prefer having `apt` manage MongoDB updates instead of entrusting `docker`, `npm`, etc. with that responsibility...


@tewinget do you know what missed_txs is?


建议将命令执行结果也贴出来。这样方便你自己以后回顾命令。修改文件和目录权限建议学习一下用数字如何表示。


여기서 말하는 외부와 내부는 어떤건가요


바로 그것이 뭔가요


In c072426, it looks like AMF is only included on Windows. Because ffmpeg forces `--enable-amf` for all OSs, ffmpeg fails to configure on !windows.

```
# uname -a
Darwin carbon 17.6.0 Darwin Kernel Version 17.6.0: Tue May  8 15:22:16 PDT 2018; root:xnu-4570.61.1~1/RELEASE_X86_64 x86_64
# make
[...]
ERROR: amf requested but not found
# ls build/contrib
bin/            freetype/       harfbuzz/       jansson/        lib/            libbluray/      libdvdread/     libopus/
libspeex/       libvorbis/      libxml2/        x264/           xz/
ffmpeg/         fribidi/        include/        lame/           libass/         libdvdnav/      libogg/         libsamplerate/
libtheora/      libvpx/         share/          x265/
```


Anyone else having issues with this?? Seems my init.el fails to load dotemacs as of the latest update.

All I had in my init.el were (add-to-list 'load-path "path") and a couple lines to load org-dotemacs. I get the following when I run `emacs --debug-init`:
`
Debugger entered--Lisp error: (void-variable b)
  (concat "'" (symbol-name org-dotemacs-error-handling) b)
  (message "org-dotemacs: error-handling = %s" (concat "'" (symbol-name org-dotemacs-error-handling) b))
  eval-buffer(#<buffer  *load*-2920> nil "/data/data/com.termux/files/home/.emacs.d/elisp/org-dotemacs.el" nil t)  ; Reading at buffer position 24366
  load-with-code-conversion("/data/data/com.termux/files/home/.emacs.d/elisp/org-dotemacs.el" "/data/data/com.termux/files/home/.emacs.d/elisp/org-dotemacs.el" nil nil)
  load("/data/data/com.termux/files/home/.emacs.d/elisp/org-dotemacs.el" nil nil t)
  load-file("~/.emacs.d/elisp/org-dotemacs.el")
  eval-buffer(#<buffer  *load*> nil "/data/data/com.termux/files/home/.emacs.d/init.el" nil t)  ; Reading at buffer position 92
  load-with-code-conversion("/data/data/com.termux/files/home/.emacs.d/init.el" "/data/data/com.termux/files/home/.emacs.d/init.el" t t)
  load("/data/data/com.termux/files/home/.emacs.d/init" t t)
  #f(compiled-function () #<bytecode 0x1fe7d51fed>)()
  command-line()
  normal-top-level()
  eval((normal-top-level))
  load("loadup.el")
`
When I comment out the org-dotemacs lines, emacs loads up fine and I seem to be able to load individual blocks manually from my dotemacs.org file. I don't see anything I understand from the above "debug". Any help appreciated. Thanks.


Grab this from emulator->command_line() so we can set this from a very high level


One of our devs think there is more to do than a definition pull request, is there anything else we'd have to do to get added?


@DrChat Isn't that host command-line?


a change!


At the moment, I don't think it's anything cuz it isn't wired up :)


Thank you! 刚刚看到，可以给我一个pull 吗？
我原来的时候不太需要指定全部urf-8。
现在好像确实是需要了。


I would be happy to look at an example and get this fixed — simply submit an example. Thanks!


Oh, I had seen that but I figured it was host command-line. I'll put that on my ever-expanding TODO list. :upside_down_face:


add one


Corvo é vida


This is a very common mistake!
Pay attention next time.


hello


No probs. Maybe we can pass extra command line parameters from Xenia straight into the guest?


@ahdezma  this is in response to 37fe8b6e52d12dd5c73138a79fcb9ec152ffa8f1

@jpince we need to add SF based on what we talked  about today.


This may be a sample, but you should delete hCPO.


I think that's probably not a good behavior unless it's explicitly stated that behavior is desired.


[inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R:64:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R#L64) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.WolfSheepPredation <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R:113:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R#L113) *style:* **Variable or function name should be lowerCamelCase.**
```r
WolfSheepPredationInit <- function(sim) {
^~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R:185:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R#L185) *style:* **Variable or function name should be lowerCamelCase.**
```r
WolfSheepPredationSave <- function(sim) {
^~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R:200:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R#L200) *style:* **Variable or function name should be lowerCamelCase.**
```r
WolfSheepPredationPosition <- function(sim) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R:220:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R#L220) *style:* **Variable or function name should be lowerCamelCase.**
```r
WolfSheepPredationPopSize <- function(sim) {
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R:243:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.R#L243) *style:* **Variable or function name should be lowerCamelCase.**
```r
WolfSheepPredationEvent <- function(sim){
^~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:15:12:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L15) *style:* **Variable or function name should be lowerCamelCase.**
```r
  function(.Object="agentMatrix", coords, ..., levelsAM) {
           ^~~~~~~
```
[R/agentMatrix-Class-methods.R:16:5:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L16) *style:* **Variable or function name should be lowerCamelCase.**
```r
    Coords <- TRUE
    ^~~~~~
```
[R/agentMatrix-Class-methods.R:29:7:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L29) *style:* **Variable or function name should be lowerCamelCase.**
```r
      Coords <- FALSE
      ^~~~~~
```
[R/agentMatrix-Class-methods.R:395:6:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L395) *style:* **Commented code should be removed.**
```r
    #charCols <- match(j, nam)
     ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:396:6:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L396) *style:* **Commented code should be removed.**
```r
    #charCols <- match(nam, j)
     ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:397:34:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L397) *style:* **Commented code should be removed.**
```r
    numCols <- which(!charCols) #colNums[!(colNums %in% charCols)]
                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:404:8:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L404) *style:* **Commented code should be removed.**
```r
      #numColsJ <- which(colNums %in% numCols)
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:409:8:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L409) *style:* **Commented code should be removed.**
```r
      #charColsJ <- which(colNums %in% charCols)
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:609:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L609) *style:* **Variable or function name should be lowerCamelCase.**
```r
head.agentMatrix <- function(x, n = 6L, ...) {
^~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:617:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L617) *style:* **Variable or function name should be lowerCamelCase.**
```r
tail.agentMatrix <- function(x, n = 6L, ...) {
^~~~~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:638:36:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L638) *style:* **Variable or function name should be lowerCamelCase.**
```r
cbind.agentMatrix <- function(..., deparse.level) {
                                   ^~~~~~~~~~~~~
```
[R/agentMatrix-Class-methods.R:662:36:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentMatrix-Class-methods.R#L662) *style:* **Variable or function name should be lowerCamelCase.**
```r
rbind.agentMatrix <- function(..., deparse.level = 1) {
                                   ^~~~~~~~~~~~~
```
[R/agentset-functions.R:1537:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentset-functions.R#L1537) *style:* **Lines should not be more than 100 characters.**
```r
        pOverL <- over(pBuffer, SpatialPoints(coords = agents2cAll, proj4string = .projNowhere), returnList = TRUE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/agentset-functions.R:1549:1:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/agentset-functions.R#L1549) *style:* **Lines should not be more than 100 characters.**
```r
                       SpatialPoints(coords = agents2@.Data[, c("xcor", "ycor"), drop = FALSE], proj4string = .projNowhere),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot.R:37:3:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/plot.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Ras <- world2raster(x)
  ^~~
```
[R/plot.R:53:3:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/plot.R#L53) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Ras <- world2raster(x)
  ^~~
```
[R/quickPlot.R:179:39:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/quickPlot.R#L179) *style:* **Commas should always have a space after.**
```r
    grobToPlot@.Data <- toPlot@.Data[,,sGrob@layerName];
                                      ^
```
[R/world-functions.R:517:25:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/world-functions.R#L517) *style:* **Put spaces around all infix operators.**
```r
          mid <- floor(n/2)
                       ~^~
```
[R/world-functions.R:534:9:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/world-functions.R#L534) *style:* **Commented code should be removed.**
```r
    #   cat("names       :", paste(ln, collapse=", "), "\n")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/world-functions.R:538:28:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/world-functions.R#L538) *style:* **Commas should always have a space after.**
```r
    print(object@.Data[1:4,1:4,])
                           ^
```
[R/world-functions.R:538:32:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/world-functions.R#L538) *style:* **Commas should always have a space after.**
```r
    print(object@.Data[1:4,1:4,])
                               ^
```
[R/worldNLR-classes-methods.R:340:5:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/R/worldNLR-classes-methods.R#L340) *style:* **Variable or function name should be lowerCamelCase.**
```r
    NLwMs <- list(...)
    ^~~~~
```
[tests/testthat/test-plotting.R:6:3:](https://github.com/PredictiveEcology/NetLogoR/blob/64f27c786ec249cf5f9f4d9de8fcbc52b913d753/tests/testthat/test-plotting.R#L6) *style:* **Variable or function name should be lowerCamelCase.**
```r
  t1_0 <- createTurtles(n = 10, coords = cbind(rep(0, 10), rep(0, 10)))
  ^~~~
```


Clean up login form. Added placeholder for article_detail and article_form. Added login mutation script.


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Perhaps `nozzle_size` makes more sense...?


Should be reverted now.


谢谢


Also, I doubt that requireDistribution is necessary here. It was probably only there to force a fork.


what up


Это игровыми опциями надо делать)


What is this `untitled.html` ?


Capmfire))))


Please push this logic to Mgr


@etejedor , ok. In that I'll have to modify the recursive call as well. I'll fix this :+1:


Заменить $filename на $filename ?: self::FILENAME


Удалить метод, т.к. логика не отличается от родительской


Заменить $filename на $filename ?: self::FILENAME и удалить верхнюю строчку


I guess this is just a temporary fix, right? This change means changing an input at task execution time.

Can't we just overwrite the getter?


Adding pre-release dependency to stable package is not cool. This breaks some policies in strict buils


Вынести формирование стоимости в отдельный метод


That's how we handled it in other packages as well. I think it's useful to be able to see in the parameters section if a parameter is in fact variadic. Your thoughts?


mr potato es un villano #3


Changed.


We could do that as well, this was just a hotfix to get things working again.


Done.


Removed 'get' because the variables are directly called and don't need seperate functions in class.


a


Extented functionality of reset


Created multidev environment [scicomposer#pr-31](https://dashboard.pantheon.io/sites/c2ba47eb-fd4a-436b-a2f6-28dc47557ea3#pr-31).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-31-scicomposer.pantheonsite.io/)


What is this runtime dependency needed for? Can this be removed (or listed in `devDependencies`)?


This modification doesn't work. Variable "str" must be incremented in some place.


do przemyslenia


You could "archive" this repository in the settings, then the repository would be read-only.


About the is_running use : since is_running is actually locking a mutex, it might be costly to call it at each iteration of the loop. Maybe it would be better if it would be called only in case the acquisition would fail (i.e. if ret_acq is true)


I just wonder, why remove metrics? You can just add a metrics.yml file on the root dir of the software with "enabled: false" and it will stop sending data.
Remember metrics is important for us, to see if our software is popular and daily used by many people and motive us and help recruiting developers.

I hope you will not take mad this message, it's not the point.
Friendly, Vincent.


et le rouge?


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Source Code of entire Project


With ` --with-boost-libdir=/boot/system/lib` removed:
```
checking which boost to use... external
checking for boostlib >= 1.47... yes
checking whether the Boost::Date_Time library is available... yes
configure: error: Could not find a version of the boost date_time library!
Error running configure at ./autogen.sh line 289.

```


Maybe this could be destructured:
```js
const { apolloClient, wsClient } = createApolloClient(options)
```


Build version: __`0.1.1-fix-lerna.26`__ :crossed_fingers: [`fix-lerna`](https://github.com/streamich/git-cz/tree/fix-lerna) on [*Travis*](https://travis-ci.org/streamich/git-cz/builds/75613925) :tada:


chyba


нельзя выполнять search по message если не админ. Лучше выполнять поиск только по name


Programming questions


человекопонятный


Este software da Commission Nationale de l'Informatique et des Libertés (CNIL) pretende guiar os responsáveis pelo tratamento na construção e demonstração de conformidade para com o RGPD.  Através da metodologia desenvolvida pela CNIL, esta ferramenta ajuda na avaliação de risco dos dados pessoais da organizaçao.


Why this function? If you don't want to conflict with the `options` you can rename it to `finalProviderOptions` or use `const` scoping:
```js
let apolloProvider
{
  const options = ...
  apolloProvider = new VueApollo(options)
}
```


Build version: __`1.7.0-master.28`__ :crossed_fingers: [`master`](https://github.com/streamich/git-cz/tree/master) on [*Travis*](https://travis-ci.org/streamich/git-cz/builds/75614176) :tada:


Why don't you call  `setFromTriplets()` directly for `mass_matrix`?  Maybe you first have to apply [`SprseMatrix.resize()`](https://eigen.tuxfamily.org/dox/classEigen_1_1SparseMatrix.html#af88551f30202341b7cc24cfadabdec5c).


1. Пропала ссылка на карту штата. Так же я не вижу логотипа. Мне кажется стоит его сделать одним из пунктов меню. Получится такая разметка:
- Информация
- Фото и видео
- Логотип
- Карта штата
- Гостиницы

2. Всем пунктам меню надо прописать ссылку внутри li: Информация  и т.д.
3. Рекомендую прописать классы элементам li типа: main-menu__item
4. Логотип нужно разместить в теге img и также в ссылке. Только ссылке задай дополнительный класс: logo


socket.c #define SOCK_SKIP_USERCB_SENT is to skip sent callback to MCU


It is not used yet, right?  Also it has either the wrong name.


The telegram group seems to be closed. I am unable join the find the group using the link.


Esta ferramenta foi originalmente desenhada pelo  Commission Nationale de l'Informatique et des Libertés (CNIL), Autoridade Francesa de Proteção de Dados, para ajudar o subcontratante a ser compatível com o GDPR.
Este software é gratuito e de código aberto. Caso pretenda se envolver neste projeto, poderá baixar o código fonte do Github, modificá-lo e compartilhá-lo com a comunidade.


Пропала главная секция с большой картинкой. Надо ее разметить section, добавить классы типа: .main-banner, .main-benner__title и т.д.
Сама картинка я думаю будет просто фоном, ее не надо размещать отдельно в теге.


It's better put together the `nullptr `judgement, then the other. because you can see `ui16 `has nothing to do with the condition checking after itself. so the following may make more sense:
```
if (nullptr == elem || nullptr == ui16)
{
  ...
}

if (tinyxml2::XMLError::XML_SUCCESS != elem->QueryUnsignedText(&ui) || ui >= 65536)
{
  ...
}
```


Como rejeitou a análise PIA, esta regressou à revisão para corrigir as alterações necessárias.


These enum values probably need more descriptive names, since there's only one global namespace (so a header file might define `ANY` itself, which would be bad). Maybe `SOURCE_NONE`, etc?


ok


With the changes i made, i aprove the translation


There seems to be vague for the error prompt, more specific is better


# NVISO-BE/dvna - SQLi - SQL Injection security issue has been found in badbadsqli.js

**Description:** Untrusted User Input in RAW SQL Query can cause SQL Injection

**Commit**: https://github.com/NVISO-BE/dvna/commit/f80ce236e01994a42c8275a54afb938ebbc860df

**Commited by:** @Someniak

**Detail:**

The issue has been found in badbadsqli.js:

```js
const exec = require('child_process').exec;
var mathjs = require('mathjs')
const Op = db.Sequelize.Op

module.exports.userSearch = function(req, res) {
        var query = "SELECT name,id FROM Users WHERE login='" + req.body.login + "'";
        db.sequelize.query(query, {
                model: db.User
            }).then(user => {
                    if (user.length) {
```


thanks


Я думаю что весь блок с приветствием и причинами лучше разместить в 1 section, который назвать что то типа features.
Дальше у тебя будет заголовок скрытый h2 - Особенности Седоны с классом features__title
Дальше пойдет блок приветствия. думаю что то типа features__welcome и features__welcome_title (Это где Седона лучше всех и вот они 5 причин)


@marthabanana eshi errors pale tze en mporo na kamw build to site. exekinisa na ta kamnw alla ap oti fenete en kamposa. touta dame en mia idea gia to ti theli sasma. Os epi to pliston:

1. ta filenames ton artists pou prepei na kamnoun match me to entry tous sto timetable (to id)
2. ta filenames ton artists pou prepei na en alphanumeric characters or dashes only. diladi `0-9`, `a-z`, `A-Z`, and `-` or `_`.
3. to image pou kamni reference sto artist file (`import image from ....`) prepei na en akrivos opos en to filename tis ikonas (case sensitivity matters)

otan ta sasete pe mou na xanadokimaso


@biilmann & @bcomnes I'm curious, why does this need to go into production builds?


The main issue is having extra arguments in `print`. Currently we do not have them in general. The only exceptions are `summary.cca` and `summary.decorana`  which have `head`& `tail`. Your idea of `betadisper` would be the third case, but I suggest you don't do it.

It also seems that *most*  `print` methods have no `digits`, but they have `...` which may or may not pass `digits` to appropriate functions. However, probably there are many `print` cases that can be only controlled via `"digits"` option.


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why mention Python 2 explicitly? isn't Python <= 3.5 enough?


What compatibility risk is there for adding an alias?


PEP8 => `Metadata(title='my title', author='John Smith')` (no space around = for keyword arguments)


I didn't realize you can add comments like this. Cool. I think in a later check-in I do delete hCPO in a FINALLY block.


I wrote "Main.java"


From https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/String/includes:

> In Firefox 18 - 39, the name of this method was contains(). It was renamed to includes() in bug 1102219 due to the following reason:
>
> It's been reported that some websites using MooTools 1.2 broke on Firefox 17. This version of MooTools checks whether String.prototype.contains() exists and, if it doesn't,  MooTools adds its own function. With the introduction of this function in Firefox 17, the behavior of that check changed in a way that causes code based on MooTools' String.prototype.contains() implementation to break. As a result, the implementation was disabled in Firefox 17 and String.prototype.contains() was available one version later, in Firefox 18, when outreach to MooTools was leading to the release of MooTools version 1.2.6.
>
> MooTools 1.3 forces its own version of String.prototype.contains(), so websites relying on it should not break. However, you should note that MooTools 1.3 signature and ECMAScript 2015 signatures for this method differ (on the second argument). Later, MooTools 1.5+ changed the signature to match the ES2015 standard.
>
> In Firefox 48, String.prototype.contains() has been removed. Use String.prototype.includes() only.


Switch?


"Why is an architectural review required? Has there been a recent outage, or is this proactive architectural planning?" should be in Aim, not plan - it's scope of the review itself


s/expect when/except for operations modifying the object in-place, such as/


I am gonna get popular now, see #github-log


Do I have to create a new function in Mgr?


These functions prepare us to read the size and type out of the `object_info` struct. But in the atom list, they're marked as `ANY`. My understanding is that if we have _only_ `ANY` atoms, we'd prefer `object_info` over reading in the whole object. But that if we have `ANY` atoms alongside `ONLY_GET_OBJ`, then we wouldn't call `object_info` at all, prefering just use the single `get_object` call.

But then we would not use these `oi.info` pointers at all. I think it could still make sense to set them up speculatively, and if we end up not needing to call `object_info`, no harm done. But then how does the final string format know where to grab the values from? I think `get_object` and `get_object_info` would need to _both_ write into `oi.size`, but I don't see that logic anywhere.


We have configured nginx to instead listen to port 80 though: https://github.com/WISVCH/flitcie/commit/2ba238b62ed8381229f56749d7f21932376b7a1e#diff-b2223aec69ff69443414e4170f05dca4R2 Is this still incorrect?


Blamed for Db.lock


I still don't get this part. If we need to know the deref objectname, then we don't need to do anything to the deref'd object at all (neither `get_object` nor `get_object_info`). We need to do a `get_object` on the _original_ object in order to peel it turn up the deref objectname.


Note that `vpon` was rendered `vpō` in the 1611 printing:

![1611 the authorized king james bible dragged](https://user-images.githubusercontent.com/4005415/41095234-763fb624-6a16-11e8-9ed2-7e2dd5c25c99.jpg)


This part looks good, and what I expected.


changes done by me


I got the following error when starting trust-ray, can you please advise?  @kolya182 @vikmeup

throw new error_1.FirebaseAppError(error_1.AppErrorCodes.INVALID_CREDENTIAL, errorMessage);
            ^
Error: Certificate object must contain a string "private_key" property.


s/to dump/dumping|you dump/
verbs used after prepositions should end with -ing


It seems like we'd need to do something like `if (deref && *name != '*') continue;` here. Because getting the deref'd object's info means we'll call this function with `deref=1`, but some atoms may be marked `*` and some may not.

Or are we relying on the fact that `v->s` will be non-NULL for all of the non-deref atoms we already filled in? I think that actually works, but it's pretty subtle. We'd at least want a comment to that effect (maybe that is even what you were trying to get at with the comment here, but I didn't quite understand it).