[inst/examples/example_experiment.R:91:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_experiment.R#L91) *style:* **Commented code should be removed.**
```r
  # library(raster)
    ^~~~~~~~~~~~~~~
```
[inst/examples/example_experiment.R:92:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_experiment.R#L92) *style:* **Commented code should be removed.**
```r
  # beginCluster(20) # if you have multiple clusters available, use them here to save time
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_experiment.R:96:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_experiment.R#L96) *style:* **Commented code should be removed.**
```r
  # endCluster() # end the clusters
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_experiment.R:152:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_experiment.R#L152) *style:* **Commented code should be removed.**
```r
  # fires <- lapply(sims, function(x) x$landscape$fires) %>% stack
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:49:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L49) *style:* **Commented code should be removed.**
```r
  # cl <- makeCluster(detectCores() - 1) # not implemented yet in DEoptim
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:84:4:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L84) *style:* **Commented code should be removed.**
```r
  #stopCluster(cl) # not yet implemented, waiting for DEoptim
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:107:34:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L107) *style:* **Variable or function name should be lowerCamelCase.**
```r
    params(sim1)$caribouMovement$N <- pars[2]
                                 ^
```
[inst/examples/example_POM.R:114:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L114) *style:* **Variable or function name should be lowerCamelCase.**
```r
    nPattern_Out <- caribouFn(out$caribou)
    ^~~~~~~~~~~~
```
[inst/examples/example_POM.R:120:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L120) *style:* **Commented code should be removed.**
```r
    # cat(minimizeFn)
      ^~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:121:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L121) *style:* **Commented code should be removed.**
```r
    # cat(" ")
      ^~~~~~~~
```
[inst/examples/example_POM.R:122:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L122) *style:* **Commented code should be removed.**
```r
    # cat(pars)
      ^~~~~~~~~
```
[inst/examples/example_POM.R:123:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/examples/example_POM.R#L123) *style:* **Commented code should be removed.**
```r
    # cat("\n")
      ^~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:1:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L1) *style:* **Variable or function name should be lowerCamelCase.**
```r
SpaDES.core.version <- "0.1.0"
^~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:54:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L54) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.caribouMovement <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:86:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L86) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.plotInterval, "caribouMovement", "plot", .last())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:95:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L95) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.plotInterval, "caribouMovement", "plot", .last())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:102:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L102) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.saveInterval, "caribouMovement", "save", .last() + 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:114:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L114) *style:* **Variable or function name should be lowerCamelCase.**
```r
Init <- function(sim) {
^~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:121:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L121) *style:* **Variable or function name should be lowerCamelCase.**
```r
  N <- P(sim)$N
  ^
```
[inst/sampleModules/caribouMovement/caribouMovement.R:122:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L122) *style:* **Variable or function name should be lowerCamelCase.**
```r
  IDs <- as.character(1:N)
  ^~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:138:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/caribouMovement/caribouMovement.R#L138) *style:* **Variable or function name should be lowerCamelCase.**
```r
Move <- function(sim) {
^~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:1:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L1) *style:* **Variable or function name should be lowerCamelCase.**
```r
SpaDES.core.version <- "0.1.0"
^~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:20:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L20) *style:* **Lines should not be more than 100 characters.**
```r
    person(c("Alex", "M"), "Chubaty", email = "alexander.chubaty@canada.ca", role = c("aut", "cre")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:21:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L21) *style:* **Lines should not be more than 100 characters.**
```r
    person(c("Eliot", "J", "B"), "McIntire", email = "eliot.mcintire@canada.ca", role = c("aut", "cre")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:35:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L35) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("persistprob", "numeric", 0.00, 0, 1, "probability of fire persisting in a pixel"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:37:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L37) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("spreadprob", "numeric", 0.225, 0.05, 0.5, "probability of fire spreading into a pixel"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:38:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L38) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("startTime", "numeric", start(sim) + 1, 0, end(sim), "time of initial fire ignition"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:39:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L39) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInitialTime", "numeric", start(sim), start(sim), end(sim) + 1, "time to schedule first plot event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:41:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L41) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInitialTime", "numeric", NA_real_, NA, NA, "time to schedule first save event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:42:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L42) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInterval", "numeric", NA_real_, NA, NA, "time interval between save events")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:59:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L59) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.fireSpread <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:87:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L87) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim), "fireSpread", "stats") # do stats immediately following burn
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:142:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L142) *style:* **Variable or function name should be lowerCamelCase.**
```r
Init <- function(sim) {
^~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:146:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L146) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Fires <- raster(extent(landscapes), ncol = ncol(landscapes),
  ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:150:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L150) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Fires <- setValues(Fires, 0)
  ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:153:14:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L153) *style:* **Variable or function name should be lowerCamelCase.**
```r
  landscapes$Fires <- Fires
             ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:159:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L159) *style:* **Variable or function name should be lowerCamelCase.**
```r
Burn <- function(sim) {
^~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:162:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L162) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Fires <- spread(landscapes[[1]],
  ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:174:14:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L174) *style:* **Variable or function name should be lowerCamelCase.**
```r
  landscapes$Fires <- Fires
             ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:181:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/fireSpread/fireSpread.R#L181) *style:* **Variable or function name should be lowerCamelCase.**
```r
Stats <- function(sim) {
^~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:1:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L1) *style:* **Variable or function name should be lowerCamelCase.**
```r
SpaDES.core.version <- "0.1.0"
^~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:33:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L33) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("inRAM", "logical", FALSE, TRUE, FALSE, "should the raster be stored in memory?"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:34:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L34) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("nx", "numeric", 100L, 10L, 500L, "size of map (number of pixels) in the x dimension"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:35:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L35) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("ny", "numeric", 100L, 10L, 500L, "size of map (number of pixels) in the y dimension"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:37:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L37) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInitialTime", "numeric", start(sim), start(sim), NA, "time to schedule first plot event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:38:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L38) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInterval", "numeric", NA_real_, NA, NA, "time interval between plot events"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:39:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L39) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInitialTime", "numeric", NA_real_, NA, NA, "time to schedule first save event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:40:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L40) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInterval", "numeric", NA_real_, NA, NA, "time interval between save events"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:41:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L41) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".useCache", "logical", FALSE, c("init", "plot"), NA, "should the module result be cached for future use")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:55:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L55) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.randomLandscapes <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:75:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L75) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.saveInterval, "randomLandscapes", "save", .last() + 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:86:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L86) *style:* **Variable or function name should be lowerCamelCase.**
```r
Init <- function(sim) {
^~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:100:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/randomLandscapes/randomLandscapes.R#L100) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DEM <- gaussMap(template, scale = 300, var = 0.03, speedup = speedup, inMemory = inMemory)
    ^~~
```
[inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R:17:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R#L17) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInitialTime", "numeric", NA_real_, NA, NA, "This describes the simulation time at which the first plot event should occur"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R:18:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R#L18) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInitialTime", "numeric", NA_real_, NA, NA, "This describes the simulation time at which the first save event should occur")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:231:50:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L231) *style:* **Commas should always have a space after.**
```r
          cat(crayon::blue("  Using ", fromWhere," copy of", cur$moduleName, "module\n"))
                                                 ^
```
[R/cache.R:242:50:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L242) *style:* **Commas should always have a space after.**
```r
          cat(crayon::blue("  Using ", fromWhere," copy of", cur$eventType, "event in",
                                                 ^
```
[R/cache.R:289:10:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L289) *style:* **Commented code should be removed.**
```r
        #checkPath(cacheRepo, create = TRUE) #SpaDES dependency
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:365:14:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L365) *style:* **Commented code should be removed.**
```r
            #object2@events <- unique(rbindlist(list(object@events, object2@events)))
             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:380:10:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L380) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      for(atts in attrsToGrab) {
         ^
```
[R/cache.R:384:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L384) *style:* **Commented code should be removed.**
```r
      # attr(object2, "tags") <- attr(object, "tags")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:385:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L385) *style:* **Commented code should be removed.**
```r
      # attr(object2, "call") <- attr(object, "call")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:386:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L386) *style:* **Commented code should be removed.**
```r
      # attr(object2, "function") <- attr(object, "function")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:425:66:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L425) *style:* **Variable or function name should be lowerCamelCase.**
```r
  setGeneric(".addTagsToOutput", function(object, outputObjects, FUN) {
                                                                 ^~~
```
[R/cache.R:448:48:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L448) *style:* **Variable or function name should be lowerCamelCase.**
```r
  definition = function(object, outputObjects, FUN, preDigestByClass) {
                                               ^~~
```
[R/cache.R:540:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L540) *style:* **Variable or function name should be lowerCamelCase.**
```r
objSize.simList <- function(x, quick = getOption("reproducible.quick", FALSE)) {
^~~~~~~~~~~~~~~
```
[R/cache.R:567:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L567) *style:* **Variable or function name should be lowerCamelCase.**
```r
makeMemoiseable.simList <- function(x) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:575:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/cache.R#L575) *style:* **Variable or function name should be lowerCamelCase.**
```r
unmakeMemoiseable.simList_ <- function(x) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/checkpoint.R:36:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/checkpoint.R#L36) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.checkpoint <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:86:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L86) *style:* **Lines should not be more than 100 characters.**
```r
                xAsCall <- .isLastLineSim(x = x, xAsString = bb[seq(funStarts[yy], funEnds[yy + 1])])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:90:16:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L90) *style:* **Commented code should be removed.**
```r
              #y = strsplit(bb[funStarts[yy]], split = "\\s+")[[1]][1]
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:91:53:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L91) *style:* **Commas should always have a space after.**
```r
              y <- paste0(cantCodeCheckMessage, "'",bb[funStarts[yy]], "'")
                                                    ^
```
[R/code-checking.R:144:39:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L144) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if (identical(type, "returnSim")) { # This is intended for only the last line of a function
                                      ^
```
[R/code-checking.R:182:48:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L182) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      } else if (identical(x[[1]], quote(`<-`)) ) {
                                               ^
```
[R/code-checking.R:185:62:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L185) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
            if (any(grepl(x[[2]][[2]], pattern = ".envir"))) {# i.e., sim@.envir
                                                             ^
```
[R/code-checking.R:202:19:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L202) *style:* **Place a space before left parenthesis, except in a function call.**
```r
          x <- x[-(1:2)]
                  ^
```
[R/code-checking.R:218:29:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L218) *style:* **Place a space before left parenthesis, except in a function call.**
```r
          x[[2]] <- x[[2]][-(1:2)]
                            ^
```
[R/code-checking.R:286:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L286) *style:* **Lines should not be more than 100 characters.**
```r
  allChecks <- list(simAssigns = simAssigns, simGets = simGets, returnsSim = returnsSim, assignToSim = assignToSim, fg = fg)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:319:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L319) *style:* **Lines should not be more than 100 characters.**
```r
    allChecks[anyCantCodeCheck] <- lapply(names(cantCodeCheck[anyCantCodeCheck]), function(objName) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:368:51:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L368) *style:* **Commas should always have a space after.**
```r
                                              " ",verb," declared in outputObjects, ",
                                                  ^
```
[R/code-checking.R:368:56:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L368) *style:* **Commas should always have a space after.**
```r
                                              " ",verb," declared in outputObjects, ",
                                                       ^
```
[R/code-checking.R:384:20:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L384) *style:* **Commas should always have a space after.**
```r
               " ",verb," declared in inputObjects, ",
                   ^
```
[R/code-checking.R:384:25:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L384) *style:* **Commas should always have a space after.**
```r
               " ",verb," declared in inputObjects, ",
                        ^
```
[R/code-checking.R:395:90:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L395) *style:* **Commas should always have a space after.**
```r
                                       paste0(paste(missingFrmMod, collapse = ", "), " ",verb,
                                                                                ^
```
[R/code-checking.R:440:75:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L440) *style:* **Commas should always have a space after.**
```r
             " but only for the 'get' functions, not the 'set' function ","
                                                                          ^
```
[R/code-checking.R:454:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L454) *style:* **Lines should not be more than 100 characters.**
```r
    missingInMetadata <- simAssignsNotInDotInputObjects[!(simAssignsNotInDotInputObjects %in% outputObjNames)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:463:24:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L463) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                       ^
```
[R/code-checking.R:463:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L463) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                                   ^
```
[R/code-checking.R:464:33:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L464) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in outputObjects")
                                ^
```
[R/code-checking.R:464:45:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L464) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in outputObjects")
                                            ^
```
[R/code-checking.R:471:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L471) *style:* **Lines should not be more than 100 characters.**
```r
    missingInMetadata <- simAssignsInDotInputObjects[!(simAssignsInDotInputObjects %in% inputObjNames)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:480:24:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L480) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                       ^
```
[R/code-checking.R:480:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L480) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                                   ^
```
[R/code-checking.R:481:33:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L481) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                ^
```
[R/code-checking.R:481:45:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L481) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                            ^
```
[R/code-checking.R:503:24:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L503) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," used from sim inside ",
                       ^
```
[R/code-checking.R:503:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L503) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," used from sim inside ",
                                   ^
```
[R/code-checking.R:504:33:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L504) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                ^
```
[R/code-checking.R:504:45:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L504) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                            ^
```
[R/code-checking.R:516:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L516) *style:* **Commas should always have a space after.**
```r
        " ",verb," used from sim inside ",
            ^
```
[R/code-checking.R:516:18:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L516) *style:* **Commas should always have a space after.**
```r
        " ",verb," used from sim inside ",
                 ^
```
[R/code-checking.R:518:18:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L518) *style:* **Commas should always have a space after.**
```r
        ", but ",verb," not declared in inputObjects"
                 ^
```
[R/code-checking.R:518:23:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L518) *style:* **Commas should always have a space after.**
```r
        ", but ",verb," not declared in inputObjects"
                      ^
```
[R/code-checking.R:661:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L661) *style:* **Commented code should be removed.**
```r
    #unique(pd[outerWh, "line1"])
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:665:34:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L665) *style:* **Commas should always have a space after.**
```r
      whInner <- any((pd[outerWh,"line1"] < lwf) & (pd[outerWh,"line2"] > lwf) )
                                 ^
```
[R/code-checking.R:665:64:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L665) *style:* **Commas should always have a space after.**
```r
      whInner <- any((pd[outerWh,"line1"] < lwf) & (pd[outerWh,"line2"] > lwf) )
                                                               ^
```
[R/code-checking.R:665:79:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/code-checking.R#L665) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      whInner <- any((pd[outerWh,"line1"] < lwf) & (pd[outerWh,"line2"] > lwf) )
                                                                              ^
```
[R/copy.R:37:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/copy.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
            sim_ <- object
            ^~~~
```
[R/downloadData.R:54:96:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L54) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    io <- .parseModulePartial(sim, modules = list(module), defineModuleElement = "inputObjects" )
                                                                                ^
```
[R/downloadData.R:242:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L242) *style:* **Commented code should be removed.**
```r
    # parsedModule <- parse(file = file.path(path, module, paste0(module, '.R')))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:243:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L243) *style:* **Commented code should be removed.**
```r
    # urls <- .getSourceURL(pattern = fileToDownload, x = parsedModule)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:250:8:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L250) *style:* **Commented code should be removed.**
```r
      #urls <- moduleMetadata(module, path)$inputObjects$sourceURL
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:262:27:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L262) *style:* **Commas should always have a space after.**
```r
    chksums2 <- chksums[0,]
                          ^
```
[R/downloadData.R:263:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L263) *style:* **Commented code should be removed.**
```r
    #children <- moduleMetadata(module, path)$childModules
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:266:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L266) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
            ^
```
[R/downloadData.R:266:18:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L266) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
                 ^
```
[R/downloadData.R:266:54:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L266) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
                                                     ^
```
[R/downloadData.R:266:56:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/downloadData.R#L266) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
                                                       ^
```
[R/experiment.R:200:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/experiment.R#L200) *style:* **Commented code should be removed.**
```r
    #sim <- Copy(sim, objects = FALSE, queues = TRUE)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:215:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/experiment.R#L215) *style:* **Commented code should be removed.**
```r
    # cl <- tryCatch(getCluster(), error = function(x) NULL)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:216:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/experiment.R#L216) *style:* **Commented code should be removed.**
```r
    # on.exit(if (!is.null(cl)) returnCluster(), add = TRUE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:218:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/experiment.R#L218) *style:* **Commented code should be removed.**
```r
    #if (length(modules) == 0) modules <- list(modules(sim)[-(1:4)])
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:222:11:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/experiment.R#L222) *style:* **Commented code should be removed.**
```r
        # unlist(params[paramsTmp], recursive = FALSE)
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:314:58:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/experiment.R#L314) *style:* **Commented code should be removed.**
```r
            params(sim_)[[mod[x]]][[param[[x]]]] <- val #factorialExp[ind,x]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/helpers.R:230:74:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/helpers.R#L230) *style:* **Place a space before left parenthesis, except in a function call.**
```r
                             paste0("package:", .pkgEnv$corePackagesVec[-(1:2)]))
                                                                         ^
```
[R/helpers.R:260:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/helpers.R#L260) *style:* **Variable or function name should be lowerCamelCase.**
```r
all.equal.simList <- function(target, current, ...) {
^~~~~~~~~~~~~~~~~
```
[R/load.R:198:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/load.R#L198) *style:* **Lines should not be more than 100 characters.**
```r
                names(argument) <- c(nam, names(formals(getFromNamespace(loadFun[y], loadPackage[y])))[1])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/misc-methods.R:467:55:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/misc-methods.R#L467) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
          (inherits(get(w, envir = envir), "integer")) ) {
                                                      ^
```
[R/module-define.R:719:63:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-define.R#L719) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      exts <- na.omit(match(file_ext(fl), .fileExts[, "exts"]) )
                                                              ^
```
[R/module-dependencies-class.R:53:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-class.R#L53) *style:* **Variable or function name should be lowerCamelCase.**
```r
            out.df <- data.frame(
            ^~~~~~
```
[R/module-dependencies-class.R:172:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-class.R#L172) *style:* **Commented code should be removed.**
```r
    #   warning("input object data.frame should use colnames sourceURL.")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-dependencies-class.R:174:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-class.R#L174) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !all(colnames(.outputObjects()) %in% colnames(object@outputObjects)) ) {
        ^
```
[R/module-dependencies-class.R:174:78:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-class.R#L174) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !all(colnames(.outputObjects()) %in% colnames(object@outputObjects)) ) {
                                                                             ^
```
[R/module-dependencies-methods.R:43:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L43) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- .depsEdgeListMem(deps, plot)
    ^~
```
[R/module-dependencies-methods.R:56:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L56) *style:* **Variable or function name should be lowerCamelCase.**
```r
  sim.in <- sim.out <- data.table(objectName = character(0),
  ^~~~~~
```
[R/module-dependencies-methods.R:56:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L56) *style:* **Variable or function name should be lowerCamelCase.**
```r
  sim.in <- sim.out <- data.table(objectName = character(0),
            ^~~~~~~
```
[R/module-dependencies-methods.R:61:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L61) *style:* **Variable or function name should be lowerCamelCase.**
```r
      z.in <- as.data.table(x@inputObjects)[, .(objectName, objectClass)]
      ^~~~
```
[R/module-dependencies-methods.R:62:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L62) *style:* **Variable or function name should be lowerCamelCase.**
```r
      z.out <- as.data.table(x@outputObjects)[, .(objectName, objectClass)]
      ^~~~~
```
[R/module-dependencies-methods.R:65:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L65) *style:* **Variable or function name should be lowerCamelCase.**
```r
        sim.in <<- rbindlist(list(sim.in, z.in), use.names = TRUE)
        ^~~~~~
```
[R/module-dependencies-methods.R:68:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L68) *style:* **Variable or function name should be lowerCamelCase.**
```r
        sim.out <<- rbindlist(list(sim.out, z.out), use.names = TRUE)
        ^~~~~~~
```
[R/module-dependencies-methods.R:80:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L80) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- dx[, list(from = module, to = i.module,
    ^~
```
[R/module-dependencies-methods.R:83:15:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L83) *style:* **Variable or function name should be lowerCamelCase.**
```r
    if (plot) DT <- DT[!duplicated(DT[, 1:2, with = FALSE]), ]
              ^~
```
[R/module-dependencies-methods.R:85:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L85) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- data.table(from = character(0), to = character(0),
    ^~
```
[R/module-dependencies-methods.R:164:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L164) *style:* **Variable or function name should be lowerCamelCase.**
```r
    M <- distances(simGraph, mode = "out")
    ^
```
[R/module-dependencies-methods.R:196:39:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L196) *style:* **`%>%` should always have a space before it and a new line after it, unless the full pipeline fits on one line.**
```r
      missingObjects <- simEdgeList %>% filter(from != to) %>%
                                    ~~^
```
[R/module-dependencies-methods.R:210:26:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L210) *style:* **`%>%` should always have a space before it and a new line after it, unless the full pipeline fits on one line.**
```r
    return(newEdgeList %>% data.table() %>% setorder("from", "to", "objName"))
                       ~~^
```
[R/module-dependencies-methods.R:246:79:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-dependencies-methods.R#L246) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
              loadOrder <- names(simGraph[[tsort, ]]) %>% .[!(. %in% "_INPUT_" )]
                                                                              ^
```
[R/module-repository.R:28:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-repository.R#L28) *style:* **Lines should not be more than 100 characters.**
```r
#'          (\url{http://spades-core.predictiveecology.org/articles/ii-modules.html#module-directory-structure-modulename}),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:52:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-repository.R#L52) *style:* **Lines should not be more than 100 characters.**
```r
    zipFiles <- grep(file.path(name, "data"), zipFiles, invert = TRUE, value = TRUE) # remove any zip in data folder
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:293:8:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-repository.R#L293) *style:* **Commented code should be removed.**
```r
      #versionWarning(name, version)
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:305:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-repository.R#L305) *style:* **Lines should not be more than 100 characters.**
```r
        GET(zip, ua, config = list(config(token = pat)), write_disk(localzip, overwrite = overwrite))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:401:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-repository.R#L401) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/module-repository.R:402:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/module-repository.R#L402) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/moduleMetadata.R:72:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/moduleMetadata.R#L72) *style:* **Commented code should be removed.**
```r
    #metadata <- eval(parse(text = x)) # can't be used because can't evaluate start(sim)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:78:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L78) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- tail(completed(sim), n)
    ^~
```
[R/plotting-diagrams.R:173:28:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L173) *style:* **`%>%` should always have a space before it and a new line after it, unless the full pipeline fits on one line.**
```r
        sapply(ll, NROW) %>% sum() %>% `*`(., 26L)
                         ~~^
```
[R/plotting-diagrams.R:325:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L325) *style:* **Variable or function name should be lowerCamelCase.**
```r
      PlotRemovingDots <- function(modDia, plotFn, axes, ...,
      ^~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:326:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L326) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.color,
                                   ^~~~~~~~~~~~
```
[R/plotting-diagrams.R:327:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L327) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.size,
                                   ^~~~~~~~~~~
```
[R/plotting-diagrams.R:328:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L328) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.size2,
                                   ^~~~~~~~~~~~
```
[R/plotting-diagrams.R:329:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L329) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.shape,
                                   ^~~~~~~~~~~~
```
[R/plotting-diagrams.R:330:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L330) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.label.cex,
                                   ^~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:331:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L331) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.label.family,
                                   ^~~~~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:345:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting-diagrams.R#L345) *style:* **Lines should not be more than 100 characters.**
```r
          c(nchar(namesModDia)^0.8 * 10) # use exponential to stretch out, and multiplication to make all bigger
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting.R:6:31:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L6) *style:* **Variable or function name should be lowerCamelCase.**
```r
                              na.color, zero.color, length){
                              ^~~~~~~~
```
[R/plotting.R:6:41:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L6) *style:* **Variable or function name should be lowerCamelCase.**
```r
                              na.color, zero.color, length){
                                        ^~~~~~~~~~
```
[R/plotting.R:37:25:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        na.color, zero.color, length) {
                        ^~~~~~~~
```
[R/plotting.R:37:35:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        na.color, zero.color, length) {
                                  ^~~~~~~~~~
```
[R/plotting.R:86:22:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L86) *style:* **Put spaces around all infix operators.**
```r
      eval(parse(text=deparse(elems[[useElem]])), envir=tmp@.envir),
                    ~^~
```
[R/plotting.R:86:56:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L86) *style:* **Put spaces around all infix operators.**
```r
      eval(parse(text=deparse(elems[[useElem]])), envir=tmp@.envir),
                                                      ~^~
```
[R/plotting.R:87:12:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L87) *style:* **Put spaces around all infix operators.**
```r
      error=function(x) eval(parse(text=deparse(elems[[useElem]])), envir=envir))
          ~^~
```
[R/plotting.R:87:40:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L87) *style:* **Put spaces around all infix operators.**
```r
      error=function(x) eval(parse(text=deparse(elems[[useElem]])), envir=envir))
                                      ~^~
```
[R/plotting.R:87:74:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/plotting.R#L87) *style:* **Put spaces around all infix operators.**
```r
      error=function(x) eval(parse(text=deparse(elems[[useElem]])), envir=envir))
                                                                        ~^~
```
[R/POM.R:128:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L128) *style:* **Lines should not be more than 100 characters.**
```r
#' @param objFnCompare Character string. Either, "MAD" or "RMSE" indicating that inside the objective
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/POM.R:186:12:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L186) *style:* **Variable or function name should be lowerCamelCase.**
```r
           NaNRetries = NA, logObjFnVals = FALSE, weights, useLog = FALSE) {
           ^~~~~~~~~~
```
[R/POM.R:196:25:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L196) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        NaNRetries, logObjFnVals, weights, useLog) {
                        ^~~~~~~~~~
```
[R/POM.R:213:28:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L213) *style:* **Variable or function name should be lowerCamelCase.**
```r
    if (is.na(NaNRetries)) NaNRetries <- 1
                           ^~~~~~~~~~
```
[R/POM.R:237:11:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L237) *style:* **Variable or function name should be lowerCamelCase.**
```r
          sim_ <- Copy(sim)
          ^~~~
```
[R/POM.R:255:66:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L255) *style:* **Put spaces around all infix operators.**
```r
          envPOMCalled <- sys.frame(min(grep("POM", sys.calls()))-1)
                                                                ~^~
```
[R/POM.R:322:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L322) *style:* **Lines should not be more than 100 characters.**
```r
          cat(format(unlist(lapply(objectiveRes, function(x) x[["value"]])), digits = 4), dep = "\t")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/POM.R:360:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/38c1b41869d0a28b43927694582bf539385a33cc/R/POM.R#L360) *style:* **Lines should not be more than 100 characters.**
```r
      par[whP] <- unlist(deps[[modName]]@parameters$default[deps[[modName]]@parameters$paramName == names(P(sim, modName)[whParamsByMod[whP]])])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


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*seem


I don't think I understand what is being inverted here. Can you give a before/after example?

--------------------------------------------------------------------------------------
Steven Ludtke, Ph.D. <sludtke@bcm.edu <mailto:sludtke@bcm.edu>>                      Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology                      (www.bcm.edu/biochem <http://www.bcm.edu/biochem>)
Academic Director, CryoEM Core                                        (cryoem.bcm.edu <http://cryoem.bcm.edu/>)
Co-Director CIBR Center                                    (www.bcm.edu/research/cibr <http://www.bcm.edu/research/cibr>)
Co-Director National Center For Macromolecular Imaging                  (ncmi.bcm.edu <http://ncmi.bcm.edu/>)

> On Jul 9, 2018, at 1:04 PM, James Michael Bell <notifications@github.com> wrote:
>
> I figured that path names based on the set names would help keep cell tomography projects organized; however, flipping the file names around isn't necessary. It just makes the project directory look a lot more organized. What do you think this will break? I'm happy to revert the commit if necessary.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub <https://github.com/cryoem/eman2/commit/c33766f2fc94189f66eb9a8287a5e0ea2ea35786#commitcomment-29645591>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AJ6i6lakPPqYiYI5MhTd352CxjFKaqJrks5uE5s0gaJpZM4VII74>.
>


I feel like all of this can probably simplified, but I don't have an immediate suggestion.  Stare at it for 5m and see if you see it?  If not, if nothing else comes up at the IETF hackathon, maybe I'll stare at it for 10m. :)


@FRidh This update doesn't pass tests on Darwin:

```
builder for '/nix/store/b1lg03kmdjqafwsr9665439sf0w8rh8w-python2.7-tqdm-4.23.4.drv' failed with exit code 1; last 10 log lines:
    File "/private/tmp/nix-build-python2.7-tqdm-4.23.4.drv-0/tqdm-4.23.4/tqdm/tests/tests_synchronisation.py", line 164, in test_monitoring_multi
      assert t2.miniters == 500  # check that t2 was not adjusted
  AssertionError

  ----------------------------------------------------------------------
  Ran 58 tests in 6.345s

  FAILED (failures=1, skipped=9)
  Test failed: <unittest.runner.TextTestResult run=58 errors=0 failures=1>
  error: Test failed: <unittest.runner.TextTestResult run=58 errors=0 failures=1>
[0 built (1 failed)]
```


nit: should have {} around the else block too, especially when the if block has {} (too easy to accidentally add a line outside it by accident otherwise)


Just as a general comment, the main problem was that this specific converter configuration was defined on the `EnableBinding` which is application related configuration and not the general infrastructure. The only reason why it does work for single binder scenarios is because of the parent/child setup which we don't do for multi-binder, hence the error. By moving it specifically as one of the binder's mandatory configuration ensures that it is always there regardless of single.multi binder scenarios.


Hello, why not uncomment the `try/ except IndexError condition`?
I am facing the issue when I try to use 1D data with h5f (autocorrelation sequence)


from a tomogram called "tomograms/tomo1__bin4.hdf" extract particles with tag "ribosome"
before the particles will be called "particles3d/tomo1__ribosome.hdf" now it is "particles3d/ribosome__tomo1.hdf".
The argument is this won't link to the same json file in info directory and some programs may fail to find ctf and tilt information..


Please close #297.


You forgot m_hWnd here


@EduardoPires Have you done any more work on v2 that you can publish for us?


@ikzk 比如说follow jliu？


158913899-Add-single-sided-natural-ventilation-example-file (Myoldmopar) - x86_64-Linux-Ubuntu-14.04-gcc-4.8: OK (2971 of 2971 tests passed, 11 test warnings)

Messages:

 * 11 tests had: AUD diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


Changes to file naming which will impact what base_name() returns may easily cause problems and should be done very cautiously...

--------------------------------------------------------------------------------------
Steven Ludtke, Ph.D. <sludtke@bcm.edu <mailto:sludtke@bcm.edu>>                      Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology                      (www.bcm.edu/biochem <http://www.bcm.edu/biochem>)
Academic Director, CryoEM Core                                        (cryoem.bcm.edu <http://cryoem.bcm.edu/>)
Co-Director CIBR Center                                    (www.bcm.edu/research/cibr <http://www.bcm.edu/research/cibr>)
Co-Director National Center For Macromolecular Imaging                  (ncmi.bcm.edu <http://ncmi.bcm.edu/>)

> On Jul 9, 2018, at 1:43 PM, g5v991x <notifications@github.com> wrote:
>
> from a tomogram called "tomograms/tomo1__bin4.hdf" extract particles with tag "ribosome"
> before the particles will be called "particles3d/tomo1__ribosome.hdf" now it is "particles3d/ribosome__tomo1.hdf".
> The argument is this won't link to the same json file in info directory and some programs may fail to find ctf and tilt information..
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub <https://github.com/cryoem/eman2/commit/c33766f2fc94189f66eb9a8287a5e0ea2ea35786#commitcomment-29646140>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AJ6i6gshky4AWAprHM8Af5qQ4sJuJTaTks5uE6RMgaJpZM4VII74>.
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Template


Key is defunct.


remove-curve-type (nealkruis) - i386-Windows-7-VisualStudio-14: Build Failed

Failures:

integration Test Summary
 * Passed: 298
 * Failed: 327

![Build Badge](http://img.shields.io/badge/build%20status-failing-red.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-57.47%25-red.png)


Kindly your notes are not accessible while i am at home.


I'll revert the change to e2spt_extract.py.


Check out lines 521 to 547 in /lib/functions/olsrd.sh

This, I think, would be the ideal place to determine the proper name for the pid file


Fix #1490: core/NumericInput inputRef (#2649)

Preview: documentation | landing | table


Very good, thank you. :)
Changelog is not appearing on [Release page](https://github.com/blastrock/pkgj/releases/tag/v0.27), though.


158913899-Add-single-sided-natural-ventilation-example-file (Myoldmopar) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


attached property


Why this Unicode junk?
```raw
∩╗┐#ifndef HEADER_CURL_SETUP_H
#define HEADER_CURL_SETUP_H
```
Invisible here at Github, but present in the stored files.


The idea was that you'd use StoreError here https://github.com/ncalexan/application-services/blob/logins/sync15-adapter/src/error.rs#L108-L109

It's not clear to me how to avoid this being tedious for users though, I suspect if we implemented From for failure::Error it would be easy for us to accidentally use outside of the store, and we could have some other part of the adapter accidentally emitting StoreErrors because of a couple implicit conversions gone wrong.

I'm open to suggestions here though. There might be a way to do this such that we could type erase it later without much work.