[inst/examples/example_experiment.R:91:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_experiment.R#L91) *style:* **Commented code should be removed.**
```r
  # library(raster)
    ^~~~~~~~~~~~~~~
```
[inst/examples/example_experiment.R:92:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_experiment.R#L92) *style:* **Commented code should be removed.**
```r
  # beginCluster(20) # if you have multiple clusters available, use them here to save time
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_experiment.R:96:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_experiment.R#L96) *style:* **Commented code should be removed.**
```r
  # endCluster() # end the clusters
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_experiment.R:152:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_experiment.R#L152) *style:* **Commented code should be removed.**
```r
  # fires <- lapply(sims, function(x) x$landscape$fires) %>% stack
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:48:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L48) *style:* **Commented code should be removed.**
```r
  # cl <- makeCluster(detectCores() - 1) # not implemented yet in DEoptim
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:83:4:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L83) *style:* **Commented code should be removed.**
```r
  #stopCluster(cl) # not yet implemented, waiting for DEoptim
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:106:34:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L106) *style:* **Variable or function name should be lowerCamelCase.**
```r
    params(sim1)$caribouMovement$N <- pars[2]
                                 ^
```
[inst/examples/example_POM.R:113:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L113) *style:* **Variable or function name should be lowerCamelCase.**
```r
    nPattern_Out <- caribouFn(out$caribou)
    ^~~~~~~~~~~~
```
[inst/examples/example_POM.R:119:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L119) *style:* **Commented code should be removed.**
```r
    # cat(minimizeFn)
      ^~~~~~~~~~~~~~~
```
[inst/examples/example_POM.R:120:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L120) *style:* **Commented code should be removed.**
```r
    # cat(" ")
      ^~~~~~~~
```
[inst/examples/example_POM.R:121:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L121) *style:* **Commented code should be removed.**
```r
    # cat(pars)
      ^~~~~~~~~
```
[inst/examples/example_POM.R:122:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/examples/example_POM.R#L122) *style:* **Commented code should be removed.**
```r
    # cat("\n")
      ^~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:1:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L1) *style:* **Variable or function name should be lowerCamelCase.**
```r
SpaDES.core.version <- "0.1.0"
^~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:54:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L54) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.caribouMovement <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:86:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L86) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.plotInterval, "caribouMovement", "plot", .last())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:95:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L95) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.plotInterval, "caribouMovement", "plot", .last())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:102:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L102) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.saveInterval, "caribouMovement", "save", .last() + 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:114:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L114) *style:* **Variable or function name should be lowerCamelCase.**
```r
Init <- function(sim) {
^~~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:121:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L121) *style:* **Variable or function name should be lowerCamelCase.**
```r
  N <- P(sim)$N
  ^
```
[inst/sampleModules/caribouMovement/caribouMovement.R:122:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L122) *style:* **Variable or function name should be lowerCamelCase.**
```r
  IDs <- as.character(1:N)
  ^~~
```
[inst/sampleModules/caribouMovement/caribouMovement.R:138:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/caribouMovement/caribouMovement.R#L138) *style:* **Variable or function name should be lowerCamelCase.**
```r
Move <- function(sim) {
^~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:1:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L1) *style:* **Variable or function name should be lowerCamelCase.**
```r
SpaDES.core.version <- "0.1.0"
^~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:20:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L20) *style:* **Lines should not be more than 100 characters.**
```r
    person(c("Alex", "M"), "Chubaty", email = "alexander.chubaty@canada.ca", role = c("aut", "cre")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:21:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L21) *style:* **Lines should not be more than 100 characters.**
```r
    person(c("Eliot", "J", "B"), "McIntire", email = "eliot.mcintire@canada.ca", role = c("aut", "cre")),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:35:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L35) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("persistprob", "numeric", 0.00, 0, 1, "probability of fire persisting in a pixel"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:37:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L37) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("spreadprob", "numeric", 0.225, 0.05, 0.5, "probability of fire spreading into a pixel"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:38:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L38) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("startTime", "numeric", start(sim) + 1, 0, end(sim), "time of initial fire ignition"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:39:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L39) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInitialTime", "numeric", start(sim), start(sim), end(sim) + 1, "time to schedule first plot event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:41:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L41) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInitialTime", "numeric", NA_real_, NA, NA, "time to schedule first save event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:42:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L42) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInterval", "numeric", NA_real_, NA, NA, "time interval between save events")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:59:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L59) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.fireSpread <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:87:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L87) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim), "fireSpread", "stats") # do stats immediately following burn
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:142:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L142) *style:* **Variable or function name should be lowerCamelCase.**
```r
Init <- function(sim) {
^~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:146:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L146) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Fires <- raster(extent(landscapes), ncol = ncol(landscapes),
  ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:150:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L150) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Fires <- setValues(Fires, 0)
  ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:153:14:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L153) *style:* **Variable or function name should be lowerCamelCase.**
```r
  landscapes$Fires <- Fires
             ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:159:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L159) *style:* **Variable or function name should be lowerCamelCase.**
```r
Burn <- function(sim) {
^~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:162:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L162) *style:* **Variable or function name should be lowerCamelCase.**
```r
  Fires <- spread(landscapes[[1]],
  ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:174:14:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L174) *style:* **Variable or function name should be lowerCamelCase.**
```r
  landscapes$Fires <- Fires
             ^~~~~
```
[inst/sampleModules/fireSpread/fireSpread.R:181:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/fireSpread/fireSpread.R#L181) *style:* **Variable or function name should be lowerCamelCase.**
```r
Stats <- function(sim) {
^~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:1:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L1) *style:* **Variable or function name should be lowerCamelCase.**
```r
SpaDES.core.version <- "0.1.0"
^~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:33:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L33) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("inRAM", "logical", FALSE, TRUE, FALSE, "should the raster be stored in memory?"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:34:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L34) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("nx", "numeric", 100L, 10L, 500L, "size of map (number of pixels) in the x dimension"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:35:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L35) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter("ny", "numeric", 100L, 10L, 500L, "size of map (number of pixels) in the y dimension"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:37:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L37) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInitialTime", "numeric", start(sim), start(sim), NA, "time to schedule first plot event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:38:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L38) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInterval", "numeric", NA_real_, NA, NA, "time interval between plot events"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:39:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L39) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInitialTime", "numeric", NA_real_, NA, NA, "time to schedule first save event"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:40:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L40) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInterval", "numeric", NA_real_, NA, NA, "time interval between save events"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:41:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L41) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".useCache", "logical", FALSE, c("init", "plot"), NA, "should the module result be cached for future use")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:55:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L55) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.randomLandscapes <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:75:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L75) *style:* **Lines should not be more than 100 characters.**
```r
      sim <- scheduleEvent(sim, time(sim) + P(sim)$.saveInterval, "randomLandscapes", "save", .last() + 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:86:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L86) *style:* **Variable or function name should be lowerCamelCase.**
```r
Init <- function(sim) {
^~~~
```
[inst/sampleModules/randomLandscapes/randomLandscapes.R:100:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/randomLandscapes/randomLandscapes.R#L100) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DEM <- gaussMap(template, scale = 300, var = 0.03, speedup = speedup, inMemory = inMemory)
    ^~~
```
[inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R:17:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R#L17) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".plotInitialTime", "numeric", NA_real_, NA, NA, "This describes the simulation time at which the first plot event should occur"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R:18:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R#L18) *style:* **Lines should not be more than 100 characters.**
```r
    defineParameter(".saveInitialTime", "numeric", NA_real_, NA, NA, "This describes the simulation time at which the first save event should occur")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:128:22:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L128) *style:* **Variable or function name should be lowerCamelCase.**
```r
    obj$.list$.envir$._startClockTime <- NULL
                     ^~~~~~~~~~~~~~~~
```
[R/cache.R:235:50:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L235) *style:* **Commas should always have a space after.**
```r
          cat(crayon::blue("  Using ", fromWhere," copy of", cur$moduleName, "module\n"))
                                                 ^
```
[R/cache.R:246:50:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L246) *style:* **Commas should always have a space after.**
```r
          cat(crayon::blue("  Using ", fromWhere," copy of", cur$eventType, "event in",
                                                 ^
```
[R/cache.R:296:10:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L296) *style:* **Commented code should be removed.**
```r
        #checkPath(cacheRepo, create = TRUE) #SpaDES dependency
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:420:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L420) *style:* **Lines should not be more than 100 characters.**
```r
        #   makes soft copy of all objects, i.e., they have the identical objects, which are pointers only
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:448:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L448) *style:* **Lines should not be more than 100 characters.**
```r
        list2env(mget(lsObjectEnv[lsObjectEnv %in% createOutputs | lsObjectEnv %in% expectsInputs], envir = object@.envir), envir = object2@.envir)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:458:12:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L458) *style:* **Commented code should be removed.**
```r
          #object2@events <- unique(rbindlist(list(object@events, object2@events)))
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:462:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L462) *style:* **Lines should not be more than 100 characters.**
```r
        # This is for objects that are not in the return environment yet because they are unrelated to the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:475:10:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L475) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      for(atts in attrsToGrab) {
         ^
```
[R/cache.R:479:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L479) *style:* **Commented code should be removed.**
```r
      # attr(object2, "tags") <- attr(object, "tags")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:480:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L480) *style:* **Commented code should be removed.**
```r
      # attr(object2, "call") <- attr(object, "call")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:481:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L481) *style:* **Commented code should be removed.**
```r
      # attr(object2, "function") <- attr(object, "function")
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:514:66:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L514) *style:* **Variable or function name should be lowerCamelCase.**
```r
  setGeneric(".addTagsToOutput", function(object, outputObjects, FUN) {
                                                                 ^~~
```
[R/cache.R:537:48:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L537) *style:* **Variable or function name should be lowerCamelCase.**
```r
  definition = function(object, outputObjects, FUN, preDigestByClass) {
                                               ^~~
```
[R/cache.R:629:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L629) *style:* **Variable or function name should be lowerCamelCase.**
```r
objSize.simList <- function(x, quick = getOption("reproducible.quick", FALSE)) {
^~~~~~~~~~~~~~~
```
[R/cache.R:656:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L656) *style:* **Variable or function name should be lowerCamelCase.**
```r
makeMemoiseable.simList <- function(x) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[R/cache.R:664:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/cache.R#L664) *style:* **Variable or function name should be lowerCamelCase.**
```r
unmakeMemoiseable.simList_ <- function(x) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/checkpoint.R:36:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/checkpoint.R#L36) *style:* **Variable or function name should be lowerCamelCase.**
```r
doEvent.checkpoint <- function(sim, eventTime, eventType, debug = FALSE) {
^~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:86:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L86) *style:* **Lines should not be more than 100 characters.**
```r
                xAsCall <- .isLastLineSim(x = x, xAsString = bb[seq(funStarts[yy], funEnds[yy + 1])])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:90:16:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L90) *style:* **Commented code should be removed.**
```r
              #y = strsplit(bb[funStarts[yy]], split = "\\s+")[[1]][1]
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:91:53:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L91) *style:* **Commas should always have a space after.**
```r
              y <- paste0(cantCodeCheckMessage, "'",bb[funStarts[yy]], "'")
                                                    ^
```
[R/code-checking.R:144:39:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L144) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if (identical(type, "returnSim")) { # This is intended for only the last line of a function
                                      ^
```
[R/code-checking.R:182:48:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L182) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      } else if (identical(x[[1]], quote(`<-`)) ) {
                                               ^
```
[R/code-checking.R:185:62:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L185) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
            if (any(grepl(x[[2]][[2]], pattern = ".envir"))) {# i.e., sim@.envir
                                                             ^
```
[R/code-checking.R:202:19:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L202) *style:* **Place a space before left parenthesis, except in a function call.**
```r
          x <- x[-(1:2)]
                  ^
```
[R/code-checking.R:218:29:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L218) *style:* **Place a space before left parenthesis, except in a function call.**
```r
          x[[2]] <- x[[2]][-(1:2)]
                            ^
```
[R/code-checking.R:320:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L320) *style:* **Lines should not be more than 100 characters.**
```r
    allChecks[anyCantCodeCheck] <- lapply(names(cantCodeCheck[anyCantCodeCheck]), function(objName) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:369:51:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L369) *style:* **Commas should always have a space after.**
```r
                                              " ",verb," declared in outputObjects, ",
                                                  ^
```
[R/code-checking.R:369:56:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L369) *style:* **Commas should always have a space after.**
```r
                                              " ",verb," declared in outputObjects, ",
                                                       ^
```
[R/code-checking.R:385:20:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L385) *style:* **Commas should always have a space after.**
```r
               " ",verb," declared in inputObjects, ",
                   ^
```
[R/code-checking.R:385:25:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L385) *style:* **Commas should always have a space after.**
```r
               " ",verb," declared in inputObjects, ",
                        ^
```
[R/code-checking.R:396:90:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L396) *style:* **Commas should always have a space after.**
```r
                                       paste0(paste(missingFrmMod, collapse = ", "), " ",verb,
                                                                                ^
```
[R/code-checking.R:441:75:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L441) *style:* **Commas should always have a space after.**
```r
             " but only for the 'get' functions, not the 'set' function ","
                                                                          ^
```
[R/code-checking.R:455:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L455) *style:* **Lines should not be more than 100 characters.**
```r
    missingInMetadata <- simAssignsNotInDotInputObjects[!(simAssignsNotInDotInputObjects %in% outputObjNames)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:464:24:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L464) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                       ^
```
[R/code-checking.R:464:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L464) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                                   ^
```
[R/code-checking.R:465:33:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L465) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in outputObjects")
                                ^
```
[R/code-checking.R:465:45:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L465) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in outputObjects")
                                            ^
```
[R/code-checking.R:472:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L472) *style:* **Lines should not be more than 100 characters.**
```r
    missingInMetadata <- simAssignsInDotInputObjects[!(simAssignsInDotInputObjects %in% inputObjNames)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:481:24:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L481) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                       ^
```
[R/code-checking.R:481:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L481) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," assigned to sim inside ",
                                   ^
```
[R/code-checking.R:482:33:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L482) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                ^
```
[R/code-checking.R:482:45:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L482) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                            ^
```
[R/code-checking.R:504:24:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L504) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," used from sim inside ",
                       ^
```
[R/code-checking.R:504:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L504) *style:* **Commas should always have a space after.**
```r
                   " ",verbs[[fn]]," used from sim inside ",
                                   ^
```
[R/code-checking.R:505:33:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L505) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                ^
```
[R/code-checking.R:505:45:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L505) *style:* **Commas should always have a space after.**
```r
                   fn, ", but ",verbs[[fn]]," not declared in inputObjects")
                                            ^
```
[R/code-checking.R:517:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L517) *style:* **Commas should always have a space after.**
```r
        " ",verb," used from sim inside ",
            ^
```
[R/code-checking.R:517:18:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L517) *style:* **Commas should always have a space after.**
```r
        " ",verb," used from sim inside ",
                 ^
```
[R/code-checking.R:519:18:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L519) *style:* **Commas should always have a space after.**
```r
        ", but ",verb," not declared in inputObjects"
                 ^
```
[R/code-checking.R:519:23:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L519) *style:* **Commas should always have a space after.**
```r
        ", but ",verb," not declared in inputObjects"
                      ^
```
[R/code-checking.R:662:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L662) *style:* **Commented code should be removed.**
```r
    #unique(pd[outerWh, "line1"])
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/code-checking.R:666:34:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L666) *style:* **Commas should always have a space after.**
```r
      whInner <- any((pd[outerWh,"line1"] < lwf) & (pd[outerWh,"line2"] > lwf) )
                                 ^
```
[R/code-checking.R:666:64:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L666) *style:* **Commas should always have a space after.**
```r
      whInner <- any((pd[outerWh,"line1"] < lwf) & (pd[outerWh,"line2"] > lwf) )
                                                               ^
```
[R/code-checking.R:666:79:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/code-checking.R#L666) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      whInner <- any((pd[outerWh,"line1"] < lwf) & (pd[outerWh,"line2"] > lwf) )
                                                                              ^
```
[R/copy.R:37:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/copy.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
            sim_ <- object
            ^~~~
```
[R/downloadData.R:54:96:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L54) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    io <- .parseModulePartial(sim, modules = list(module), defineModuleElement = "inputObjects" )
                                                                                ^
```
[R/downloadData.R:242:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L242) *style:* **Commented code should be removed.**
```r
    # parsedModule <- parse(file = file.path(path, module, paste0(module, '.R')))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:243:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L243) *style:* **Commented code should be removed.**
```r
    # urls <- .getSourceURL(pattern = fileToDownload, x = parsedModule)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:250:8:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L250) *style:* **Commented code should be removed.**
```r
      #urls <- moduleMetadata(module, path)$inputObjects$sourceURL
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:275:27:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L275) *style:* **Commas should always have a space after.**
```r
    chksums2 <- chksums[0,]
                          ^
```
[R/downloadData.R:276:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L276) *style:* **Commented code should be removed.**
```r
    #children <- moduleMetadata(module, path)$childModules
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/downloadData.R:279:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L279) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
            ^
```
[R/downloadData.R:279:18:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L279) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
                 ^
```
[R/downloadData.R:279:54:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L279) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
                                                     ^
```
[R/downloadData.R:279:56:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/downloadData.R#L279) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( all( nzchar(children) & !is.na(children) ) ) {
                                                       ^
```
[R/experiment.R:200:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/experiment.R#L200) *style:* **Commented code should be removed.**
```r
    #sim <- Copy(sim, objects = FALSE, queues = TRUE)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:215:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/experiment.R#L215) *style:* **Commented code should be removed.**
```r
    # cl <- tryCatch(getCluster(), error = function(x) NULL)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:216:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/experiment.R#L216) *style:* **Commented code should be removed.**
```r
    # on.exit(if (!is.null(cl)) returnCluster(), add = TRUE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:218:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/experiment.R#L218) *style:* **Commented code should be removed.**
```r
    #if (length(modules) == 0) modules <- list(modules(sim)[-(1:4)])
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:222:11:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/experiment.R#L222) *style:* **Commented code should be removed.**
```r
        # unlist(params[paramsTmp], recursive = FALSE)
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/experiment.R:314:58:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/experiment.R#L314) *style:* **Commented code should be removed.**
```r
            params(sim_)[[mod[x]]][[param[[x]]]] <- val #factorialExp[ind,x]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/helpers.R:232:74:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/helpers.R#L232) *style:* **Place a space before left parenthesis, except in a function call.**
```r
                             paste0("package:", .pkgEnv$corePackagesVec[-(1:2)]))
                                                                         ^
```
[R/helpers.R:262:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/helpers.R#L262) *style:* **Variable or function name should be lowerCamelCase.**
```r
all.equal.simList <- function(target, current, ...) {
^~~~~~~~~~~~~~~~~
```
[R/load.R:198:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/load.R#L198) *style:* **Lines should not be more than 100 characters.**
```r
                names(argument) <- c(nam, names(formals(getFromNamespace(loadFun[y], loadPackage[y])))[1])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/misc-methods.R:465:55:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/misc-methods.R#L465) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
          (inherits(get(w, envir = envir), "integer")) ) {
                                                      ^
```
[R/module-define.R:744:63:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-define.R#L744) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      exts <- na.omit(match(file_ext(fl), .fileExts[, "exts"]) )
                                                              ^
```
[R/module-dependencies-class.R:53:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-class.R#L53) *style:* **Variable or function name should be lowerCamelCase.**
```r
            out.df <- data.frame(
            ^~~~~~
```
[R/module-dependencies-class.R:171:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-class.R#L171) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !all(colnames(._outputObjectsDF()) %in% colnames(object@outputObjects)) ) {
        ^
```
[R/module-dependencies-class.R:171:81:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-class.R#L171) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( !all(colnames(._outputObjectsDF()) %in% colnames(object@outputObjects)) ) {
                                                                                ^
```
[R/module-dependencies-methods.R:43:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L43) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- .depsEdgeListMem(deps, plot)
    ^~
```
[R/module-dependencies-methods.R:56:3:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L56) *style:* **Variable or function name should be lowerCamelCase.**
```r
  sim.in <- sim.out <- data.table(objectName = character(0),
  ^~~~~~
```
[R/module-dependencies-methods.R:56:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L56) *style:* **Variable or function name should be lowerCamelCase.**
```r
  sim.in <- sim.out <- data.table(objectName = character(0),
            ^~~~~~~
```
[R/module-dependencies-methods.R:61:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L61) *style:* **Variable or function name should be lowerCamelCase.**
```r
      z.in <- as.data.table(x@inputObjects)[, .(objectName, objectClass)]
      ^~~~
```
[R/module-dependencies-methods.R:62:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L62) *style:* **Variable or function name should be lowerCamelCase.**
```r
      z.out <- as.data.table(x@outputObjects)[, .(objectName, objectClass)]
      ^~~~~
```
[R/module-dependencies-methods.R:65:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L65) *style:* **Variable or function name should be lowerCamelCase.**
```r
        sim.in <<- rbindlist(list(sim.in, z.in), use.names = TRUE)
        ^~~~~~
```
[R/module-dependencies-methods.R:68:9:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L68) *style:* **Variable or function name should be lowerCamelCase.**
```r
        sim.out <<- rbindlist(list(sim.out, z.out), use.names = TRUE)
        ^~~~~~~
```
[R/module-dependencies-methods.R:80:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L80) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- dx[, list(from = module, to = i.module,
    ^~
```
[R/module-dependencies-methods.R:83:15:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L83) *style:* **Variable or function name should be lowerCamelCase.**
```r
    if (plot) DT <- DT[!duplicated(DT[, 1:2, with = FALSE]), ]
              ^~
```
[R/module-dependencies-methods.R:85:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L85) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- data.table(from = character(0), to = character(0),
    ^~
```
[R/module-dependencies-methods.R:163:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L163) *style:* **Variable or function name should be lowerCamelCase.**
```r
    M <- distances(simGraph, mode = "out")
    ^
```
[R/module-dependencies-methods.R:195:39:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L195) *style:* **`%>%` should always have a space before it and a new line after it, unless the full pipeline fits on one line.**
```r
      missingObjects <- simEdgeList %>% filter(from != to) %>%
                                    ~~^
```
[R/module-dependencies-methods.R:209:26:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L209) *style:* **`%>%` should always have a space before it and a new line after it, unless the full pipeline fits on one line.**
```r
    return(newEdgeList %>% data.table() %>% setorder("from", "to", "objName"))
                       ~~^
```
[R/module-dependencies-methods.R:245:79:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-dependencies-methods.R#L245) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
              loadOrder <- names(simGraph[[tsort, ]]) %>% .[!(. %in% "_INPUT_" )]
                                                                              ^
```
[R/module-repository.R:28:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-repository.R#L28) *style:* **Lines should not be more than 100 characters.**
```r
#'          (\url{http://spades-core.predictiveecology.org/articles/ii-modules.html#module-directory-structure-modulename}),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:52:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-repository.R#L52) *style:* **Lines should not be more than 100 characters.**
```r
    zipFiles <- grep(file.path(name, "data"), zipFiles, invert = TRUE, value = TRUE) # remove any zip in data folder
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:293:8:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-repository.R#L293) *style:* **Commented code should be removed.**
```r
      #versionWarning(name, version)
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:305:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-repository.R#L305) *style:* **Lines should not be more than 100 characters.**
```r
        GET(zip, ua, config = list(config(token = pat)), write_disk(localzip, overwrite = overwrite))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/module-repository.R:401:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-repository.R#L401) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/module-repository.R:402:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/module-repository.R#L402) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/moduleMetadata.R:75:6:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/moduleMetadata.R#L75) *style:* **Commented code should be removed.**
```r
    #metadata <- eval(parse(text = x)) # can't be used because can't evaluate start(sim)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:78:5:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L78) *style:* **Variable or function name should be lowerCamelCase.**
```r
    DT <- tail(completed(sim), n)
    ^~
```
[R/plotting-diagrams.R:173:28:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L173) *style:* **`%>%` should always have a space before it and a new line after it, unless the full pipeline fits on one line.**
```r
        sapply(ll, NROW) %>% sum() %>% `*`(., 26L)
                         ~~^
```
[R/plotting-diagrams.R:325:7:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L325) *style:* **Variable or function name should be lowerCamelCase.**
```r
      PlotRemovingDots <- function(modDia, plotFn, axes, ...,
      ^~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:326:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L326) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.color,
                                   ^~~~~~~~~~~~
```
[R/plotting-diagrams.R:327:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L327) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.size,
                                   ^~~~~~~~~~~
```
[R/plotting-diagrams.R:328:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L328) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.size2,
                                   ^~~~~~~~~~~~
```
[R/plotting-diagrams.R:329:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L329) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.shape,
                                   ^~~~~~~~~~~~
```
[R/plotting-diagrams.R:330:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L330) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.label.cex,
                                   ^~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:331:36:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L331) *style:* **Variable or function name should be lowerCamelCase.**
```r
                                   vertex.label.family,
                                   ^~~~~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:345:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L345) *style:* **Lines should not be more than 100 characters.**
```r
          c(nchar(namesModDia)^0.8 * 10) # use exponential to stretch out, and multiplication to make all bigger
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotting-diagrams.R:443:22:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting-diagrams.R#L443) *style:* **Only use double-quotes.**
```r
    if ((Sys.info()[['sysname']] == "Darwin") && (Sys.which("glpsol") == "")) {
                     ^~~~~~~~~
```
[R/plotting.R:6:31:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L6) *style:* **Variable or function name should be lowerCamelCase.**
```r
                              na.color, zero.color, length){
                              ^~~~~~~~
```
[R/plotting.R:6:41:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L6) *style:* **Variable or function name should be lowerCamelCase.**
```r
                              na.color, zero.color, length){
                                        ^~~~~~~~~~
```
[R/plotting.R:37:25:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        na.color, zero.color, length) {
                        ^~~~~~~~
```
[R/plotting.R:37:35:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L37) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        na.color, zero.color, length) {
                                  ^~~~~~~~~~
```
[R/plotting.R:86:22:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L86) *style:* **Put spaces around all infix operators.**
```r
      eval(parse(text=deparse(elems[[useElem]])), envir=tmp@.envir),
                    ~^~
```
[R/plotting.R:86:56:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L86) *style:* **Put spaces around all infix operators.**
```r
      eval(parse(text=deparse(elems[[useElem]])), envir=tmp@.envir),
                                                      ~^~
```
[R/plotting.R:87:12:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L87) *style:* **Put spaces around all infix operators.**
```r
      error=function(x) eval(parse(text=deparse(elems[[useElem]])), envir=envir))
          ~^~
```
[R/plotting.R:87:40:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L87) *style:* **Put spaces around all infix operators.**
```r
      error=function(x) eval(parse(text=deparse(elems[[useElem]])), envir=envir))
                                      ~^~
```
[R/plotting.R:87:74:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/plotting.R#L87) *style:* **Put spaces around all infix operators.**
```r
      error=function(x) eval(parse(text=deparse(elems[[useElem]])), envir=envir))
                                                                        ~^~
```
[R/POM.R:131:1:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L131) *style:* **Lines should not be more than 100 characters.**
```r
#' @param objFnCompare Character string. Either, "MAD" or "RMSE" indicating that inside the objective
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/POM.R:191:12:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L191) *style:* **Variable or function name should be lowerCamelCase.**
```r
           NaNRetries = NA, logObjFnVals = FALSE, weights, useLog = FALSE) {
           ^~~~~~~~~~
```
[R/POM.R:201:25:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L201) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        NaNRetries, logObjFnVals, weights, useLog) {
                        ^~~~~~~~~~
```
[R/POM.R:218:28:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L218) *style:* **Variable or function name should be lowerCamelCase.**
```r
    if (is.na(NaNRetries)) NaNRetries <- 1
                           ^~~~~~~~~~
```
[R/POM.R:242:11:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L242) *style:* **Variable or function name should be lowerCamelCase.**
```r
          sim_ <- Copy(sim)
          ^~~~
```
[R/POM.R:260:11:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L260) *style:* **Variable or function name should be lowerCamelCase.**
```r
          POMFrameNum <- .grepSysCalls(sys.calls(), pattern = "POM")
          ^~~~~~~~~~~
```
[R/POM.R:261:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L261) *style:* **Commented code should be removed.**
```r
          # scallsFirstElement <- lapply(sys.calls(), function(x) x[1])
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/POM.R:262:13:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L262) *style:* **Commented code should be removed.**
```r
          # POMFrameNum <- grep(scallsFirstElement, pattern = "POM")
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/POM.R:264:53:](https://github.com/PredictiveEcology/SpaDES.core/blob/464ab848cda62e92fafd4d0c1f6f130013b769cb/R/POM.R#L264) *style:* **Put spaces around all infix operators.**
```r
          envPOMCalled <- sys.frame(min(POMFrameNum)-1)
                                                   ~^~
```


I agree.  My latest commit addresses this issue.


I am mixed on this, I kind of like how this reads even with the little bit of duplication if I need 5 of these I guess I am totally with you on it.


Thanks, have not noticed that 😄


![](https://github.trello.services/images/mini-trello-icon.png) [resize SVG to fit window](https://trello.com/c/DKQsA3RU/54-resize-svg-to-fit-window)


What about it?


allow add


#6712-Zone-Coil-Autosizing-does-not-include-impact-of-AirTerminalSingleDuctMixer (rraustad) - x86_64-Linux-Ubuntu-14.04-gcc-4.8-IntegrationCoverage-Debug: OK (2381 of 2381 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-71.74%25-green.png)


#6712-Zone-Coil-Autosizing-does-not-include-impact-of-AirTerminalSingleDuctMixer (rraustad) - x86_64-Linux-Ubuntu-14.04-custom_check: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/half-the-images-of-a-thread-have-disappeared-even-though-they-are-still-accessible-in-the-uploads-file-on-the-vps/97136/3


fist


pass


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/my-forum-old-images-not-see/97123/7


如果能通过安全区来处理高度，估计就不需要如此麻烦的判断分辨率了。


good


@AlexPads Good job reading the plugin submission form.
![image](https://user-images.githubusercontent.com/19623715/45528300-2dac7880-b812-11e8-8ab2-b3adc88ebe43.png)


hi himadri

my name is Raj from California , i am very  much fascinated towards your script could you please reply me back with your email or phone number or you can reach me at dherajdba@gmail.com


@gyuho sure I will do it.


you should really keep the comment.

Most likely the stack overflow is caused by recursive calls due to a large number of node. Recursion is bad :-)


bitácora actualizada hasta el día 13/09/2018.


이게 마지막 커밋임 아마 push 가 안댄것 같음ㅣ


"origin" is a more common name, or in this case "upstream". But I guess it should be a config-variable taken from somewhere else.


[Jenkins vg tests](http://jenkins.cgcloud.info/job/vg/2181/) complete for merge to master.  View the [full report here](http://cgl-pipeline-inputs.s3.amazonaws.com/vg_cgl/vg_ci/jenkins_reports/branch/master/index.html).

19 tests passed, 0 tests failed and 10 tests skipped in 21838 seconds

Tests produced 2679 warnings. 2678 were for lower-than-expected alignment scores


здесь надо либо условие поменять (знак), либо ветки местами переставить
сейчас получается, что в минус уходить будет )


Точно))


строки 14 - 19 не нужно отступать, они же не в блоке


When running the program and providing the URL for analysis, from CMD or TERMINAL prompt, no "RETURN" or "ENTER" is necessary, as it will take it as a user input. From PyCharm, it seems necessary to paste the link, and press enter after moving cursor to the front of the link.


![](https://github.trello.services/images/mini-trello-icon.png) [Revise Soma animation](https://trello.com/c/HxDSyrol/21-revise-soma-animation)


Executing the daily benchmark build, I will reply here when finished:

@nanosoldier `runbenchmarks(ALL, isdaily = true)`


My idea is to force the player to finish the climb if they're almost at the top.


Hola,

Estoy recibiendo un error al momento de guardar la informacion en el modulo de Compras.
![error_compras_ncf](https://user-images.githubusercontent.com/42875307/45528917-93681880-b7b0-11e8-9856-e28db3ec9583.jpg)


Are those spaces to make code more readable?


текущий код полностью рабочий

просто для упражнения (у большинства с этим возникают сложности, поэтому я обращаю на это внимание) - попробуй обойтись совсем без вложенных условий, как я и предлагал ранее

другими словами: 19 строку встрой в основной блок условий (17 - 24 строки) через `elsif`


Now the code looks prettier and complies with PEP8 - code-style standard for python, thank you for formatting.


@DominikaK @MagdalenaZuba this feature requires developer documentation.


Why another rename? This seems to have been very rushed after Yarn announed the PnP feature.


I have seen a crash issue, the log shows:
pure virtual method called
terminate called without an active exception


Why another rename? This seems to have been very rushed after Yarn announced the PnP feature.


Fixed #5


Vracanje naloga


一个服务端，一个中文包


tql @DCjanus


Probably because of https://www.npmjs.com/package/crux


It's too strict. such as:
ps Cmongod


oo_boiler_refactor (drewyh) - x86_64-Linux-Ubuntu-14.04-gcc-4.8: OK (2922 of 3046 tests passed, 33 test warnings)

Messages:

 * 157 tests had: BND diffs.
 * 152 tests had: MDD diffs.
 * 157 tests had: MTD diffs.
 * 152 tests had: RDD diffs.
 * 124 tests had: Table big diffs.
 * 132 tests had: ESO small diffs.
 * 98 tests had: MTR small diffs.
 * 90 tests had: EIO diffs.
 * 2 tests had: AUD diffs.

Failures:

regression Test Summary
 * Passed: 527
 * Failed: 124

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-95.93%25-yellow.png)


why first argument capital and second one is in small letter, any specific reason


oo_boiler_refactor (drewyh) - x86_64-Linux-Ubuntu-14.04-cppcheck-1.61: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


нет смысла в 22 строке присваивать 0, а тут добавлять значения
22 можно убрать, а здесь `+=` заменить на `=`


Please write description in docstrings


если я не ошибаюсь, ты смотрел код Сергея Маслова
в его варианте используются петли при запросе даты, поэтому ему необходимо предварительно определить эти переменные иначе они останутся в скоупе петель и не будут доступны снаружи
в твоем варианте это предварительное присвоение бессмыссленно


попробуй разобраться - это важно


`document.cookie.replace(/(?:(?:^|.*;\s*)devcreds\s*\=\s*([^;]*).*$)|^.*$/, "$1");`


This is not an error to report.


Do you need credentials?


Yea, that was my intention here as any missing value is a bug.