[R/are_clock_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_clock_models.R#L10) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  if (is_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_clock_models.R#L12) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    if (!is_clock_model(i)) return(FALSE)
         ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_clock_models.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/are_clock_models.R:32:16:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_clock_models.R#L32) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    rlns[i] <- is_rln_clock_model(clock_models[[i]])
               ^~~~~~~~~~~~~~~~~~
```
[R/are_ids.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_ids.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  if (is_id(x)) return(TRUE)
      ^~~~~
```
[R/are_ids.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_ids.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
    if (!is_id(i)) return(FALSE)
         ^~~~~
```
[R/are_init_clock_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_init_clock_models.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  if (!are_clock_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~
```
[R/are_init_mrca_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_init_mrca_priors.R#L10) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  if (!are_mrca_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_site_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_init_site_models.R#L10) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  if (!are_site_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_tree_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_init_tree_priors.R#L10) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  if (!are_tree_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_initial_phylogenies.R:10:23:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_initial_phylogenies.R#L10) *warning:* **no visible global function definition for ‘is_phylo’**
```r
    if (!is.na(x) && !is_phylo(x)) return(FALSE)
                      ^~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_alignment_ids_in_fastas.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:15:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_alignment_ids_in_fastas.R#L15) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:16:21:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_alignment_ids_in_fastas.R#L16) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_names_in_fastas.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_names_in_fastas.R#L11) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_non_intersecting.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:13:7:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_non_intersecting.R#L13) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (is_one_na(mrca_priors)) return(TRUE)
      ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:16:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_non_intersecting.R#L16) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior_1))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:17:21:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_non_intersecting.R#L17) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior_1))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:20:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_non_intersecting.R#L20) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
      testit::assert(is_mrca_prior(mrca_prior_2))
                     ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:21:23:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_mrca_taxa_non_intersecting.R#L21) *warning:* **no visible global function definition for ‘is_one_na’**
```r
      testit::assert(!is_one_na(mrca_prior_2))
                      ^~~~~~~~~
```
[R/are_site_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_site_models.R#L10) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (is_site_model(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/are_site_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_site_models.R#L12) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    if (!is_site_model(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/are_tree_priors.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/are_tree_priors.R#L14) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    if (!is_tree_prior(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_lh_distr.R#L23) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_lh_distr.R#L25) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_operators.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_operators.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:19:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_operators.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_operators.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_operators.R#L34) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:37:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_operators.R#L37) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_prior_distr.R#L19) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:29:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_prior_distr.R#L29) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:44:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_prior_distr.R#L44) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:48:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_prior_distr.R#L48) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(clock_model$id))
                 ^~~~~
```
[R/clock_model_to_xml_state.R:26:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_state.R#L26) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_tracelog.R#L18) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_tracelog.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_tracelog.R#L33) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_treelogger.R#L9) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:24:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_model_to_xml_treelogger.R#L24) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_operators.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_models_to_xml_operators.R#L9) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_models_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_models_to_xml_state.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_models_to_xml_tracelog.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/clock_models_to_xml_tracelog.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/create_beast2_input_1_12.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_1_12.R#L39) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
    testit::assert(are_initial_phylogenies(initial_phylogenies))
                   ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_beast.R#L28) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_beast.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:30:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_beast.R#L30) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:22:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L22) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L23) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:24:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L24) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:175:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L175) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:179:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L179) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:228:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L228) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:230:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L230) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:289:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L289) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:291:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L291) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:325:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L325) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:327:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L327) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:376:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L376) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:378:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L378) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:439:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L439) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:441:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_distr.R#L441) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L18) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L19) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L20) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:21:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L21) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:172:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_loggers.R#L172) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_operators.R#L13) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_operators.R#L14) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_operators.R#L15) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_operators.R#L16) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_run.R#L25) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:26:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_run.R#L26) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:27:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_run.R#L27) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_state.R#L15) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input_state.R#L16) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_beast2_input.R:140:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_beast2_input.R#L140) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:54:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L54) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(distr))
                 ^~~~~~~~~~~~~
```
[R/distr_to_xml.R:56:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L56) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:84:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L84) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(distr))
                 ^~~~~~~~~~~~
```
[R/distr_to_xml.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L86) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:109:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L109) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(distr))
                 ^~~~~~~~~~~~~~
```
[R/distr_to_xml.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L111) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:140:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L140) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:142:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L142) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:171:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L171) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:173:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L173) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:201:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L201) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(distr))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:203:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L203) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:233:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L233) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(distr))
                 ^~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L235) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:264:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L264) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:266:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L266) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:282:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L282) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:284:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L284) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:308:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L308) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:310:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/distr_to_xml.R#L310) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/gamma_site_model_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/gamma_site_model_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/gamma_site_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/gamma_site_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_state.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/gamma_site_model_to_xml_state.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_model_name.R:17:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_clock_model_name.R#L17) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_params.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_tree_priors_n_params.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    n <- n + get_tree_prior_n_params(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_unlinked_tree_priors.R#L6) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/get_unlinked_tree_priors.R#L17) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/init_clock_models.R:45:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
      testit::assert(is_strict_clock_model(clock_model))
                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:78:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L78) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:85:26:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L85) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:92:26:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L92) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_mrca_priors.R#L14) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L14) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:18:20:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L18) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/init_tree_priors.R:41:22:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L41) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
      testit::assert(is_yule_tree_prior(tree_prior))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:48:28:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L48) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    distr_id <- distr_id + get_tree_prior_n_distrs(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:49:28:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L49) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    param_id <- param_id + get_tree_prior_n_params(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/is_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  if (is_rln_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:12:7:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/is_clock_model.R#L12) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  if (is_strict_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/b7ad46e5a5a132ca832df705a2e66d51d225971c/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```


点赞和踩


Había que añadir un nuevo constructor!


Collaborator: Review for this commit was created. [Link to review](http://553d7ee4.ngrok.io/ui#review:id=603)


``` * (pos.pieces(WHITE, PAWN) & CampWhite)``` is multiplying with a bitboard, or do I read wrongly?


so maybe bool(...) ?


直接在AddRuleController里面持有ManageRuleCotroller的引用即可


Los métodos setter no devuelven nada!


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Я пытался сделать всё более читабельно))


Este método no debería devolver nada!


RIP Codr. 2018-2018


oh, fuck, now I understand why it failed in 192 games. Bitboard transforms just in large number and it basically gives enormous increase... Thx @vondele I'm stupid


El getter era de otro atributo!


updated


In new version of laradock you don't need to have Dockerfiles for different versions of php. You need only one file in workspace with next settings:
```
#####################################
# OCI8:
#####################################
ARG INSTALL_OCI8=false
ENV INSTALL_OCI8 ${INSTALL_OCI8}
 COPY ./oci8.ini /tmp/
 ENV LD_LIBRARY_PATH /usr/local/instantclient/
 RUN if [ ${INSTALL_OCI8} = true ]; then \
    apt-get update && \
    apt-get install -y zip unzip libaio1 wget && \
    wget "https://s3-sa-east-1.amazonaws.com/4success-assets/instantclient-basic-linux.x64-12.2.0.1.0.zip" -P "/tmp" && \
        wget "https://s3-sa-east-1.amazonaws.com/4success-assets/instantclient-sdk-linux.x64-12.2.0.1.0.zip" -P "/tmp" && \
    unzip /tmp/instantclient-basic-linux.x64-12.2.0.1.0.zip -d /usr/local/ && \
    unzip /tmp/instantclient-sdk-linux.x64-12.2.0.1.0.zip -d /usr/local/ && \
    ln -s /usr/local/instantclient_12_2 /usr/local/instantclient && \
    ln -s /usr/local/instantclient/libclntsh.so.12.1 /usr/local/instantclient/libclntsh.so && \
    export LD_LIBRARY_PATH=/usr/local/instantclient && \
    echo 'instantclient,/usr/local/instantclient' | pecl install oci8 && \
    cp /tmp/oci8.ini /etc/php/${LARADOCK_PHP_VERSION}/cli/conf.d/oci8.ini \
;fi
 RUN rm -rf /tmp/*.zip && \
    rm -rf /tmp/oci8.ini
```


Zemberek kodunda google java style kullandik, dev klasorundeki style dosyasini kullanabilirsiniz.


thanks


团队背景：
国内项目， 社区驱使项目， 为区块链项目做落地应用

项目基本情况:
ZAO不可增发， 不割韭菜， 暂时没上交易所，在社区内做交换流通，总量20亿， 官网已经上线，项目正在开发落地，官网地址为 http://www.zaoworld.com。

建议 gas limit: 60000


Shouldn’t this code be added to the lower-level function `fil_space_read_crypt_data()`?

Does `fil_crypt_read_crypt_data()` really need to call `fil_space_read_crypt_data()`? It should be invoked as part of the `fil_space_get_size()` call already, right?

The logic is very convoluted. As far as I can tell, `space->size` should be 0 until the first page has been read, and `fil_space_get_space()` would be initiating that read. The read itself would be performed in `fil_node_open_file()`.


java stilinde genelde { ihmal edilmez.