[R/are_clock_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_clock_models.R#L10) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  if (is_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_clock_models.R#L12) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    if (!is_clock_model(i)) return(FALSE)
         ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_clock_models.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/are_clock_models.R:32:16:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_clock_models.R#L32) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    rlns[i] <- is_rln_clock_model(clock_models[[i]])
               ^~~~~~~~~~~~~~~~~~
```
[R/are_ids.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_ids.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  if (is_id(x)) return(TRUE)
      ^~~~~
```
[R/are_ids.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_ids.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
    if (!is_id(i)) return(FALSE)
         ^~~~~
```
[R/are_init_clock_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_init_clock_models.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  if (!are_clock_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~
```
[R/are_init_mrca_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_init_mrca_priors.R#L10) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  if (!are_mrca_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_site_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_init_site_models.R#L10) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  if (!are_site_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_tree_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_init_tree_priors.R#L10) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  if (!are_tree_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_initial_phylogenies.R:10:23:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_initial_phylogenies.R#L10) *warning:* **no visible global function definition for ‘is_phylo’**
```r
    if (!is.na(x) && !is_phylo(x)) return(FALSE)
                      ^~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_alignment_ids_in_fastas.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:15:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_alignment_ids_in_fastas.R#L15) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:16:21:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_alignment_ids_in_fastas.R#L16) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_names_in_fastas.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_names_in_fastas.R#L11) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_non_intersecting.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:13:7:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_non_intersecting.R#L13) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (is_one_na(mrca_priors)) return(TRUE)
      ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:16:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_non_intersecting.R#L16) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior_1))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:17:21:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_non_intersecting.R#L17) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior_1))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:20:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_non_intersecting.R#L20) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
      testit::assert(is_mrca_prior(mrca_prior_2))
                     ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:21:23:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_mrca_taxa_non_intersecting.R#L21) *warning:* **no visible global function definition for ‘is_one_na’**
```r
      testit::assert(!is_one_na(mrca_prior_2))
                      ^~~~~~~~~
```
[R/are_site_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_site_models.R#L10) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (is_site_model(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/are_site_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_site_models.R#L12) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    if (!is_site_model(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/are_tree_priors.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/are_tree_priors.R#L14) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    if (!is_tree_prior(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_lh_distr.R#L23) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_lh_distr.R#L25) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_operators.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_operators.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:19:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_operators.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_operators.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_operators.R#L34) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:37:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_operators.R#L37) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_prior_distr.R#L19) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:29:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_prior_distr.R#L29) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:44:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_prior_distr.R#L44) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:48:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_prior_distr.R#L48) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(clock_model$id))
                 ^~~~~
```
[R/clock_model_to_xml_state.R:26:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_state.R#L26) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_tracelog.R#L18) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_tracelog.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_tracelog.R#L33) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_treelogger.R#L9) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:24:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_model_to_xml_treelogger.R#L24) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_operators.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_models_to_xml_operators.R#L9) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_models_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_models_to_xml_state.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_models_to_xml_tracelog.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/clock_models_to_xml_tracelog.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/create_beast2_input_1_12.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_1_12.R#L39) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
    testit::assert(are_initial_phylogenies(initial_phylogenies))
                   ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_beast.R#L28) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_beast.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:30:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_beast.R#L30) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:22:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L22) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L23) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:24:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L24) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:175:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L175) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:179:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L179) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:228:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L228) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:230:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L230) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:289:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L289) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:291:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L291) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:325:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L325) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:327:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L327) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:376:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L376) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:378:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L378) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:439:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L439) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:441:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_distr.R#L441) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L18) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L19) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L20) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:21:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L21) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:172:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_loggers.R#L172) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_operators.R#L13) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_operators.R#L14) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_operators.R#L15) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_operators.R#L16) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_run.R#L25) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:26:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_run.R#L26) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:27:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_run.R#L27) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_state.R#L15) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input_state.R#L16) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_beast2_input.R:140:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_beast2_input.R#L140) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:54:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L54) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(distr))
                 ^~~~~~~~~~~~~
```
[R/distr_to_xml.R:56:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L56) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:84:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L84) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(distr))
                 ^~~~~~~~~~~~
```
[R/distr_to_xml.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L86) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:109:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L109) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(distr))
                 ^~~~~~~~~~~~~~
```
[R/distr_to_xml.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L111) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:140:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L140) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:142:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L142) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:171:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L171) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:173:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L173) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:201:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L201) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(distr))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:203:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L203) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:233:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L233) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(distr))
                 ^~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L235) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:264:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L264) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:266:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L266) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:282:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L282) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:284:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L284) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:308:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L308) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:310:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/distr_to_xml.R#L310) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/gamma_site_model_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/gamma_site_model_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/gamma_site_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/gamma_site_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_state.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/gamma_site_model_to_xml_state.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_model_name.R:17:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_clock_model_name.R#L17) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_params.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_tree_priors_n_params.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    n <- n + get_tree_prior_n_params(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_unlinked_tree_priors.R#L6) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/get_unlinked_tree_priors.R#L17) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/init_clock_models.R:45:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
      testit::assert(is_strict_clock_model(clock_model))
                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:78:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L78) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:85:26:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L85) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:92:26:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L92) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_mrca_priors.R#L14) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L14) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:18:20:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L18) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/init_tree_priors.R:41:22:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L41) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
      testit::assert(is_yule_tree_prior(tree_prior))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:48:28:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L48) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    distr_id <- distr_id + get_tree_prior_n_distrs(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:49:28:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L49) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    param_id <- param_id + get_tree_prior_n_params(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/is_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  if (is_rln_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:12:7:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/is_clock_model.R#L12) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  if (is_strict_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/1fa14ed91ed41e15e7dcd0cd896509d389aab3cb/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```


Data sets collected over a period of time by different users


idk how this works


Ok, thanks.


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Created multidev environment [cris#pr-1](https://dashboard.pantheon.io/sites/47f9bb31-f356-464f-aa57-03ca806906e2#pr-1).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-1-cris.pantheonsite.io/)


# Specs execution successful
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### Plans updated

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---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

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It seems you are right about the onXXX usage.
If a provider is removed the `onRemoveElement` is called and so we can ensure to remove links correctly...


![](https://github.trello.services/images/mini-trello-icon.png) [Toolkit Optimization: Develop the Budget Module](https://trello.com/c/yGTm827L/70-toolkit-optimization-develop-the-budget-module)


The commit messages are not the right messages here. They should be as follows:

AIType_1.java - correct message
Hand.java - bugfix: hands were not aligning properly when card was taken from first slot in hand. Now fixed.
Meld.java - refactor: removed redundant code in Meld. Getting x and y position is handled in DisplayObject which Meld extends
ViewManager.java - refactor: everything should be much easier to read now (and much less clutter)! Sorry!
JImage.java, JText.java, TileImage.java - impl: Added a function which reduces code to add these images to the JavaFX group which draws to the screen. All classes within the view package (except DisplayObject) can now be "drawn" by calling the addToDrawingTable method and providing the currently being drawn group!


> Yes agree

Sorry, I thought you agree that...


Change start script in package.json to build nuxt then start.


No multiplication will not overflow here (on any reasonable architecture) as sizeof returns a size_t, which is unsigned and has larger rank than int. The C standard ensures that (in this expression) all the arithmetic is carried out with unsigned values.


Ahh thanks for that. I agree man.. it was frustrating, and i found a medium article talking about this, but there was no mention of having to do an upgrade guide. Sigh.
Oh well, at least its behind us now


Good job man!


Sure, please go ahead.


Also Remove unnecessary line `*/` (trigger a bug on Netlify)


@chelmuth: sorry for the inconvenience. this fixup really measures memset not memcpy


Puzzle `507-040930f5` discovered in   [`test/test_dir_items.rb`](  https://github.com/zold-io/zold/blob/master/test/test_dir_items.rb)   and submitted as #511. Please, remember that the puzzle was not   necessarily added in this particular commit. Maybe it was added earlier, but   we discovered it only now.


.... actually https://github.com/StarLegacy/StarLegacy.Wiki/issues/35, not https://github.com/StarLegacy/StarLegacy.Wiki/issues/24


Yeah I messed up on a sed command -.- ... all fixed now


第三组谭磊第一周周报提交


it's better to push only when it's fully working


Is there actually a way to debug/show that FIFO lock is working correctly?


Stopped because of introducing bug.


new resume


please start using much more granular commits. this commit should have actually been at least 2 commits and preferably 3. a dedicated commit for ssl_cert_tracker would have made reverting the changes a point and click operation


this program is done with a basic c language


@vaicine it might be worth contributing this back to the original repo?


Created multidev environment [rescue-x#oct-18](https://dashboard.pantheon.io/sites/c8430b75-4272-4aca-bfcd-206b12279315#oct-18).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://oct-18-rescue-x.pantheonsite.io/)


Useless empty lines


These variables relates to editor and should not exist in the application root component.


I checked test cases by hand when porting to each new LLVM version since that made more sense when maintaining it downstream. It would need IR tests checking that the zeroing gets added to upstream it.

I think a minimal implementation like this makes sense as an initial upstream implementation, with additional options offered by future patches, but my experience with LLVM development is that I'd be overwhelmed with bikeshedding about it. It's really not how I want to spend my free time. I feel the same way about landing changes upstream in the Linux kernel. It's too much trouble without being paid to do it.


nooo, we can't have spinlocks for this

the threads actually need to be locked out/waiting on condition vars otherwise you get a lot of idling


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


with, height and stride are strictly positive of course. But later some index arithmetic is carried out which may yield some intermediate negative values and must be therefore carried out with signed integers. Declaring these values as signed integers saves a lot of casts.


It does not in fact compile. I accidentally pushed this, and then accidentally pushed the fix to the dev branch. Oops :(


Date ustawiany automatycznie jako aktualny czas.
Last update to data zmiany statusu czyli nie tutaj.


> But really, I still don't know how it could generate two blocks with different hashes (since hash collisions are not easy to find), or even how to do double-spending with it.

Transaction hashes do not include witness scripts, so the block hash is not affected by these scripts too.

@erikzhang I just realized that VerificationScript is not sufficiently deterministic too: https://github.com/neo-project/neo/blob/ecb9b15d0cc1241ed8cca4853de50de33861e4c0/neo/SmartContract/Helper.cs#L96.

Simply using a deployed script, plus 0 length vs the providing script hash can be used as a toggle.

I think we should only return the result of `GetScriptHashesForVerifying` if possible, to be completely safe.


see comments from previous commit about this method


I cannot figure out why we have contact in here, as the task requests to work with Products.


Collaborator: Review for this commit was created. [Link to review](http://553d7ee4.ngrok.io/ui#review:id=602)


aaa


Are you sure this is the only place that `swish` comes up in your code? It's very weird that the activation field seems to be set to `swish` without calling the above function.


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Basic submit forms


you could try printing some things before this line, just to make sure this actually gets called


also maybe try printing something here


@m4rcoperuano I think I may have glanced at something in Laravel News but ignored it.

Honestly, it would be good if there was a prompt in composer to acknowledge something like that.  It would have stopped my build and I would have been able to address the issue.


The formatter is now pleased.


It is not clear, why you concat everything into `name`. How then you can edit this object?


Successfully aliased the URL <https://onkometrorikki-bibmxleise.now.sh> to the following aliases.

* https://onkolansimetrorikki.now.sh
* https://onkometrorikki.now.sh
* https://onkometrorikki.fi
* https://www.onkometrorikki.fi


Hi Dany. I forked your app as I wanted to use it to output the name of the connected network in to a GeekTool widget I was making. GeekTool lets users display information from terminal commands and apps on there desktops in customised widgets. Here’s a link: https://www.macupdate.com/app/mac/10404/geektool

Basically my changes to your script were just to tweak what your default text  says to “WiFi: the network name” so that this would be what is displayed on screen inside the widget. Just my preference.


Created multidev environment [rescue-x#oct-18](https://dashboard.pantheon.io/sites/c8430b75-4272-4aca-bfcd-206b12279315#oct-18).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://oct-18-rescue-x.pantheonsite.io/)


Why u add this file ?


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-152527 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-152527") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


The PDF version is automatically generated and available [here](https://media.readthedocs.org/pdf/futhark-book/latest/futhark-book.pdf).


edision nino pro and other coming later too


This is not acceptable. We need to have it in the object model, not in the string form.


The term "swish" comes up twice in my Keras code, once as a name of the layer and once as an activation that's added, I will change them to see if it breaks anything
from keras.layers import Layer
from keras import backend as K

class Swish(Layer):
    def __init__(self, beta, **kwargs):
        super(Swish, self).__init__(**kwargs)
        self.beta = K.cast_to_floatx(beta)
        self.__name__ = 'swish'

    def call(self, inputs):
        return K.sigmoid(self.beta * inputs) * inputs

    def get_config(self):
        config = {'beta': float(self.beta)}
        base_config = super(Swish, self).get_config()
        return dict(list(base_config.items()) + list(config.items()))

    def compute_output_shape(self, input_shape):
        return input_shape


Yeah i hear ya man. Thanks for your help! I was able to upgrade and everything is working again :)


I did actually mean displayDateX ...
As in: Sometimes it's `displayDate` sometimes it's `displayDateTime`


There are multiple cases where this is not true.
if the input list is primitive array such as `string[]`, the return of `search` will be a `number[]`.
Additionally, having options such as `includeScore: true` will modify the search result to be `{ score: number, item: T}[]`


Oh, right. That's a really good point. I don't think this changes much in the way of what's installed, but I'll do it anyway. I need a chance to upgrade the image anyway, so this should be a good opportunity. Will you be around today to guide me through whatever docker stuff I get stuck on?


actually  I may have been too harsh.

Generally we'd want condition variables instead of spinlocks, but spinlock alternatives to already working condition variable implementations are nice for ultra-fast small locks.


The task requests to have A PAGE for editing.


The task requests to have A PAGE for list.


Created multidev environment [d8-digital-stlawu#pr-24](https://dashboard.pantheon.io/sites/9f185cec-9c0b-4fcb-972f-9a5f2f6ed252#pr-24).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-24-d8-digital-stlawu.pantheonsite.io/)


This is not used.


test+set is read+write... so I think you need stronger mem semantic.


We are talking about Products, right?


Now could not deploy this pull request since the `now.json` file explicitly sets `dotenv` to true.
However, there's no `.env` file in the repo.

Commit a `.env` file or unset the `dotenv` flag.
For secret environment variables, check out [Now Secrets](https://zeit.co/docs/getting-started/secrets).


I think the only thing protecting these sysctls is the DAC permissions on the inodes.

Do you think it makes sense to add an `ns_capable(<NS>, CAP_NET_ADMIN)`, where `<NS>` is the `net->user_ns` that the bridge belongs to? We'd only need to do this in `brnf_sysctl_call_tables()` when `write` is non-zero.

Maybe this isn't needed but I get uneasy when trying to determine if the sysctl file permissions inside of a maze of namespaces are sufficient when modifying a bridge inside of a maze of namespaces. :)


broken indentation


Thx for the quick reply @tmcconechy,

right, makes sense (improves control). Will add the click handler to the affected grids/columns. They can all use the same:
` click: function(evt) { window.location = evt.target.href; }`

This change was a surprise. Would be nice if the documentation for the [HyperLink](https://design.infor.com/code/ids-enterprise/latest/datagrid#formatters) formatter could mention this. A cleanup of the grid examples involving links would also improve matters. It was just pure luck that I found the example with the click handler (or brute-force to be honest). This example has a functioning link without a click handler(?): https://design.infor.com/code/ids-enterprise/latest/demo/datagrid/example-paging.html (the exception that proves the rule?)

Well, my issue is solved. Thx again.


Actually, controlBackgroundColor returns white.  :(         According to Apple docs:
https://developer.apple.com/documentation/appkit/nscolor/1524856-controlcolor?language=objc
the controlColor is a pattern color and you cannot assume that it is a solid color.   Instead, they say to use lightGrayColor


please add unit tests when you fix a bug. this is critical to detect regressions in the future


What idling? What about yield() ?


state must be represented with an object, no array. Nobody can understand what is the purpose of this array.


Aliasing failed with the following error:

~~~
Error! The alias synadia.now.sh is a deployment URL or it's in use by a different team.
~~~


Broken indentation.


you don't need to combine reducers, if you have a single reducer.


Created multidev environment [cris#pr-1](https://dashboard.pantheon.io/sites/47f9bb31-f356-464f-aa57-03ca806906e2#pr-1).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-1-cris.pantheonsite.io/)


метод крамера.обратная матрица.слау. матрицы 2х2(выкл) 3х3


[R/default_params_doc.R:10:1:](https://github.com/richelbilderbeek/razzo/blob/33be1d023bbf4d7b9d9910042cf2abc0882f6552/R/default_params_doc.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @param clock_model Name of the clock model that has to be used for the inference. Valid names are 'strict' and 'rln'.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/default_params_doc.R:38:1:](https://github.com/richelbilderbeek/razzo/blob/33be1d023bbf4d7b9d9910042cf2abc0882f6552/R/default_params_doc.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
#' @param site_model Name of the site model that has to be used for the inference. Valid names are 'jc69' and 'gtr'.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_parameters_files.R:24:3:](https://github.com/richelbilderbeek/razzo/blob/33be1d023bbf4d7b9d9910042cf2abc0882f6552/R/raz_create_parameters_files.R#L24) *warning:* **local variable 'clock_model' assigned but may not be used**
```r
  clock_model <- "strict"
  ^~~~~~~~~~~
```
[R/raz_create_parameters_files.R:25:3:](https://github.com/richelbilderbeek/razzo/blob/33be1d023bbf4d7b9d9910042cf2abc0882f6552/R/raz_create_parameters_files.R#L25) *warning:* **local variable 'site_model' assigned but may not be used**
```r
  site_model <- "jc69"
  ^~~~~~~~~~
```


Hi, I think the negative sign was correct if one looks how the pitching is done afterwards.

At the end of `actuatorLineSource::createElements()` the pitch angle is passed for pitching each element.
https://github.com/turbinesFoam/turbinesFoam/blob/2cf96e50814e595f972938df81364e4fa2570090/src/fvOptions/actuatorLineSource/actuatorLineSource.C#L355

The `pitch()` functions then rotates the elements along the `spanDirection`.
https://github.com/turbinesFoam/turbinesFoam/blob/2cf96e50814e595f972938df81364e4fa2570090/src/fvOptions/actuatorLineSource/actuatorLineElement/actuatorLineElement.C#L832-L841

Since the `spanDirection` is pointing towards the root of the blades, and assuming that the rotation `RM` is done using the right hand rule, the blades elements have to be pitched with the negative pitch value to move the leading edge towards the incoming flow.

One alternative is to change:
`elements_[i].pitch(pitch);`
by
`elements_[i].pitch(-pitch);`
in
https://github.com/turbinesFoam/turbinesFoam/blob/2cf96e50814e595f972938df81364e4fa2570090/src/fvOptions/actuatorLineSource/actuatorLineSource.C#L355


sag amal spinnst du?


this should be _baudrate/(10*1024), right !

1x start bit + 8x data bits + 1x stop bit = 10 bits per datum (if it's 8N1)


Interesting. So maybe contempt is more effective in some parts of the game than others?! I would never have thought of this.


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int is used when variables are later used in contexts that require signed arithmetic (because results may be negative) and are sufficient to hold the expected values. size_t in all other cases.

I am not sure if I understand what you expect for out of bound array access checking in `box_mean_1d`. For reliable out-of-bound checking one would have to manage a pointer to memory plus a size value in a common data structure. But darktable is still written in C, not C++.


@Guimino please update "ncd.followup.scheduleAppointment.previous"


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You can convert strings to numbers with parseInt() or parseFloat().
`var num1 = parseInt(document.formInput.firstNumber.value, 10); // 10 is for base-10 number system`
`console.log(typeof num1); // --> "number"`


AAD


Don't we also need to update the final name as well?


Note to self: this line may cause a segfault.


Initial package framework complete.


If you

```
dispatch = (reducer, payload) => {
    this.setState(reducer(this.state, payload));
  }
```

then you don't need to `.bind(this)`


final code


Ok Great. We are doing a lot better documentation with change log since we moved to github. So hopefully this sort of change wont get lost. It sort of went in as was requested and no one complained so i guess not everyone was using it your way.


si


@4ntoine Could you please rebase that on latest chromium release? Btw. do you plan to continue working on that?


Papstream , skstream , streamingdivx pas corriger car down
Filmvostfr pas corriger car je trouve pas d’où vient l'erreur ssl
Et tfarjo et tvrex pas regarder


> please add unit tests when you fix a bug. this is critical to detect regressions in the future

Yes @fbricon you are right -( I will do it.


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Seems you could use [prettier](https://marketplace.visualstudio.com/items?itemName=esbenp.prettier-vscode) to avoid fiddling with this.


Add nested set support


I'm new to stuff. But e.g. `y[i * stride_y]` what makes sure that `i * stride_y` is not a value which is outside of the array?


@lewismc I've reverted the `5.2.1-non-normative-example-2-expected.nquads` file to more or less [how it appeared in 2012](https://github.com/apache/any23/blob/e21541d257059bf0acd3d9b2fbac6585d3f297bc/test-resources/src/test/resources/microdata/5.2.1-non-normative-example-2-expected.nquads), which contained the correct expected results for this test. The only difference being, removing the generated sindice triples and changing the hcard namespace postfix from "/" to "#".


@mjansenDatabay ping


In lwtnn converter I also added swish here:
https://github.com/aghoshpub/lwtnn/commit/67776f27128e503eddc68d36b33b8cbedba0a925


Could you provide a sample that shows an incorrect rendering ? wxColour can be a pattern, at least that worked previously, when I was using CGColorRefs directly, and it should be drawn correctly. I don't know whether we'd have to support getting a 'compatible' RGB color.


Я не вижу в этом смысла. В 99% случаев никто эти партиклы не увидит. В оставшемся 1% случаев игрок просто не заметит, что нет каких-то партиклов.


@BartyMae Because of git case-sensitivity, you can disable it via `git config --global core.ignorecase true`


Created multidev environment [cris#ci-17](https://dashboard.pantheon.io/sites/47f9bb31-f356-464f-aa57-03ca806906e2#ci-17).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-17-cris.pantheonsite.io/)


Successfully aliased the URL <https://website-phevxheorl.now.sh> to the following aliases.

* https://ko.parceljs.org
* https://pt.parceljs.org
* https://zh.parceljs.org
* https://parceljs.org
* https://pl.parceljs.org
* https://ru.parceljs.org
* https://en.parceljs.org
* https://es.parceljs.org
* https://fr.parceljs.org
* https://it.parceljs.org
* https://uk.parceljs.org
* https://zh-tw.parceljs.org


Yay


converts to type number


Too


Yep


Can do, but I think it also works like this. I'll change it.


Done @fbricon with https://github.com/angelozerr/lsp4xml/commit/59a66853d041d333d94499f752fbd90fd84a6a7d


I'm sure we all can make interesting changes over java and js files, this is why I thought setting up SonarCloud could help us spot some common issues. Reviewing all java files has been more or less done after looooong discussion with Thomas to get rid of maven-jsf-plugin, I'm really happy of the result as it gives much more clarity and consistency, all java files have been formatted which gives a new breath to PF as a developer.

Though, I wish I could have more time for that, but unfortunately I'm working on PF during my free time (and try as much as my work allows me to do, to work on PF e.g not so much :cry: ). If you read what has been said in #3980 I wish from now on we rely more on SonarCloud to avoid these "code smells". I'm not sure you're aware of this? If you didn't please have a look.

I'm glad I have your attention now but I'm not pleased to do these cosmetics while I'm not the author (it's actually my very first time I'm doing that, and I hope it'll be the last...). Understand I love PrimeFaces, and my intents are only to make it better (is it possible? :yum: and it starts with code quality, all aspects of it, don't it take personnally, it goes for me, Thomas, anyone contributing...)

If you have any suggestions regarding DataTable.java, I'd be happy to share my thoughts :wink:


Now could not deploy this pull request since the `package.json` file doesn't contain a "start" or "now-start" npm script.

	Click here to see the contents of `package.json`

{
  "author": "MyOnlineStore",
  "license": "GPL-3.0",
  "bugs": {
    "url": "https://github.com/MyOnlineStore/bricks/issues"
  },
  "homepage": "https://github.com/MyOnlineStore/bricks#readme",
  "name": "@myonlinestore/bricks",
  "version": "0.6.1",
  "description": "bricks",
  "main": "dist/index.js",
  "types": "dist/src/index.d.ts",
  "keywords": [
    "MyOnlineStore",
    "react",
    "components"
  ],
  "dependencies": {
    "deepmerge": "^2.1.0",
    "react-beautiful-dnd": "^8.0.3",
    "react-input-range": "^1.3.0",
    "react-popper": "^1.0.0-beta.6",
    "resize-observer-polyfill": "^1.5.0",
    "simplebar": "^3.0.0-beta.4"
  },
  "devDependencies": {
    "@storybook/addon-knobs": "^3.4.3",
    "@storybook/addon-options": "^3.4.0",
    "@storybook/addon-storyshots": "^3.3.15",
    "@storybook/react": "^3.3.15",
    "@storybook/storybook-deployer": "^2.3.0",
    "@types/deepmerge": "^2.1.0",
    "@types/enzyme": "^3.1.9",
    "@types/enzyme-adapter-react-16": "^1.0.2",
    "@types/jest": "^22.0.1",
    "@types/node": "^9.3.0",
    "@types/react": "^16.3.11",
    "@types/react-beautiful-dnd": "^7.1.0",
    "@types/react-dom": "^16.0.5",
    "@types/react-test-renderer": "^16.0.1",
    "@types/react-transition-group": "^2.0.9",
    "@types/simplebar": "^2.4.1",
    "@types/storybook__addon-knobs": "^3.3.1",
    "@types/storybook__react": "^3.0.7",
    "@types/uuid": "^3.4.3",
    "babel-cli": "^6.26.0",
    "babel-core": "^6.26.0",
    "babel-loader": "^7.0.0",
    "babel-plugin-styled-components": "^1.5.1",
    "babel-preset-env": "^1.6.1",
    "babel-preset-react": "^6.24.1",
    "css-loader": "^0.28.11",
    "enzyme": "^3.3.0",
    "extract-text-webpack-plugin": "^3.0.2",
    "enzyme-adapter-react-16": "^1.1.1",
    "enzyme-to-json": "^3.3.3",
    "friendly-errors-webpack-plugin": "^1.6.1",
    "intl": "^1.2.5",
    "jest": "^22.4.0",
    "jest-styled-components": "^5.0.0",
    "prettier": "^1.12.1",
    "progress-bar-webpack-plugin": "^1.10.0",
    "react": "^16.3.2",
    "react-dom": "^16.3.2",
    "react-test-renderer": "^16.3.2",
    "react-transition-group": "^2.3.1",
    "rimraf": "^2.6.2",
    "source-map-loader": "^0.2.3",
    "styled-components": "^3.2.3",
    "svg-inline-loader": "^0.8.0",
    "ts-jest": "^22.4.1",
    "ts-loader": "3.5.0",
    "tslint": "^5.11.0",
    "tslint-react": "^3.5.1",
    "typescript": "^2.8.0",
    "uglify-js": "^3.3.22",
    "uglifyjs-webpack-plugin": "^1.2.5",
    "webpack": "^3.10.0",
    "webpack-bundle-analyzer": "^2.13.1",
    "webpack-dev-server": "^2.10.1",
    "webpack-visualizer-plugin": "^0.1.11"
  },
  "peerDependencies": {
    "@types/react": "^16.3.11",
    "@types/react-dom": "^16.0.5",
    "react": "^16.3.2",
    "react-dom": "^16.3.2",
    "styled-components": "^3.2.3"
  },
  "scripts": {
    "dev": "npm run watch",
    "test": "jest --config=./config/jest/jest.config.json",
    "test-coverage": "jest --config=./config/jest/jest.config.json --coverage --runInBand --bail",
    "build": "rimraf ./dist && webpack --config ./config/webpack/webpack.config.js",
    "lint-fix": "tslint --fix --project ./config/typescript/tsconfig.json --config ./config/typescript/tslint.json ./src/**/*.{ts,tsx}",
    "lint": "tslint --project ./config/typescript/tsconfig.json --config ./config/typescript/tslint.json ./src/**/*.{ts,tsx}",
    "watch": "start-storybook -p 9001 -c ./config/storybook",
    "deploy-storybook": "storybook-to-ghpages",
    "build-storybook": "build-storybook -c ./config/storybook -o .out",
    "cs-fix": "prettier --write ./src/**/*.{ts,tsx}",
    "cs": "prettier --list-different ./src/**/*.{ts,tsx}",
    "prepare": "npm run build"
  },
  "files": [
    "dist"
  ],
  "repository": {
    "type": "git",
    "url": "git+https://github.com/MyOnlineStore/bricks"
  }
}

For more information visit https://docs.npmjs.com/cli/start.


yield() counts as idling, its basically a nano-sleep (250 microseconds quoted on some benchmark) and it will 100% spin the CPU.

Moreover its taxing on the system scheduler as it must move the thread from the top of the priority list to the bottom on every yield()... and this extra work keeps the CPU at 100%

Finally spin-lock is a tool that we use if we anticipate little-to-none lock contention, here we are implementing a FIFO lock.
And the only reason I asked for a FIFO lock is for scenarios where contention is going to be so high that a thread may get locked out for an arbitrarily long amount of time due to priority inversion.


can you send the part of the Keras architecture that surrounds the place where it specifies Swish? It has two ways of specifying activation activation functions: one is like a full-blown layer, the other is a simple tag in the `config` object that each layer has. I suspect that I'm just not checking the simple tag version correctly.


@katre is the release manager for 0.19.


Main


this is basic programe


Some more modifications where made, especially code cleaning


Try to use tabs here like this:
->Recipe(
->->const std::string & _name
->,->const std::string & _description
->,->const std::string & _author
->)

Pay attention where coma is, it`ll make code easier to look through)


Seems like the kind of thing I need...lol. We use Unix endings in the ARA SDK, but all of the Projucer code was using Windows endings (I think) so I've been using that for JUCE code as well (I hope...)


@balsarori this will create a new query for each task that we want to convert? not really optimal ..


safasfa


@yairchu in this case should there be no indent?


If you need bootable floppy images for those systems for testing let me know.


unfortunately, if you subset with only one column, all the attributes are still dropped... so you have to subset with at least two columns to get the intended behaviour.

ie:
`mincLm(log_full_det ~ diet*genotype129, gfs, mask=mask) %>% .[, c("F-statistic")]` is a numeric vector
`mincLm(log_full_det ~ diet*genotype129, gfs, mask=mask) %>% .[, c("F-statistic", "tvalue-dietketogenic")]` is still a mincLm