Comment on e9e7d5d0e50237a3c9f01bd63e157224b4fcd3b1.

There are 68 results for the section all.cpplint. They have been shortened and will not be shown inline because they are more than 10.

| Message | File | Line |
|---|---|---|
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 2 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | quicksort/C/quicksort.cpp | 4 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 4 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 5 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 6 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | quicksort/C/quicksort.cpp | 7 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 7 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | quicksort/C/quicksort.cpp | 9 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 10 |
| Missing spaces around <<  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 11 |
| Missing spaces around >>  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 12 |
| Missing spaces around <<  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 13 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 14 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 15 |
| Missing spaces around <  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 15 |
| Missing space after ;  [whitespace/semicolon] [3] | quicksort/C/quicksort.cpp | 15 |
| Missing spaces around >>  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 16 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 17 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 18 |
| Missing spaces around <<  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 19 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 20 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 21 |
| Missing spaces around <  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 21 |
| Missing space after ;  [whitespace/semicolon] [3] | quicksort/C/quicksort.cpp | 21 |
| Missing spaces around <<  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 22 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 23 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 24 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | quicksort/C/quicksort.cpp | 26 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 26 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 27 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | quicksort/C/quicksort.cpp | 28 |
| Missing spaces around <  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 30 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | quicksort/C/quicksort.cpp | 31 |
| Missing space before {  [whitespace/braces] [5] | quicksort/C/quicksort.cpp | 31 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 32 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 32 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 33 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 34 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | quicksort/C/quicksort.cpp | 37 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 37 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 38 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | quicksort/C/quicksort.cpp | 39 |
| Missing space after ,  [whitespace/comma] [3] | quicksort/C/quicksort.cpp | 40 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 41 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 42 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 43 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 44 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | quicksort/C/quicksort.cpp | 46 |
| Missing space before {  [whitespace/braces] [5] | quicksort/C/quicksort.cpp | 46 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 49 |
| Empty loop bodies should use {} or continue  [whitespace/empty_loop_body] [5] | quicksort/C/quicksort.cpp | 50 |
| Missing spaces around <=  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 50 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 51 |
| Empty loop bodies should use {} or continue  [whitespace/empty_loop_body] [5] | quicksort/C/quicksort.cpp | 54 |
| Missing spaces around <  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 54 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 55 |
| Missing spaces around <  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 56 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | quicksort/C/quicksort.cpp | 57 |
| Missing space before {  [whitespace/braces] [5] | quicksort/C/quicksort.cpp | 57 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 58 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 59 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 60 |
| Missing spaces around <  [whitespace/operators] [3] | quicksort/C/quicksort.cpp | 62 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 63 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 64 |
| Missing spaces around =  [whitespace/operators] [4] | quicksort/C/quicksort.cpp | 65 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | quicksort/C/quicksort.cpp | 66 |
| Could not find a newline character at the end of the file.  [whitespace/ending_newline] [5] | quicksort/C/quicksort.cpp | 68 |

Until GitMate provides an online UI to show a better overview, you can run [coala](https://coala.io/) locally for more details.


Do we need to worry about overflow?


[R/markdownHeader.R:26:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L26) *style:* **Variable or function name should be snake_case.**
```r
markdownHeader <- function(
^~~~~~~~~~~~~~
```
[R/markdownHeader.R:32:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L32) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(text)
    ^~~~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:33:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L33) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
    assert_all_are_non_missing_nor_empty_character(text)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:34:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L34) *warning:* **no visible global function definition for ‘assertIsHeaderLevel’**
```r
    assertIsHeaderLevel(level)
    ^~~~~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:35:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L35) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(tabset)
    ^~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:36:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L36) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(asis)
    ^~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:39:21:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L39) *warning:* **no visible global function definition for ‘str_dup’**
```r
    header <- paste(str_dup("#", level), text)
                    ^~~~~~~
```
[R/markdownHeader.R:63:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L63) *style:* **Variable or function name should be snake_case.**
```r
mdHeader <- markdownHeader
^~~~~~~~
```
[R/markdownLink.R:21:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L21) *style:* **Variable or function name should be snake_case.**
```r
markdownLink <- function(
^~~~~~~~~~~~
```
[R/markdownLink.R:26:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L26) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(text)
    ^~~~~~~~~~~~~~~~~~
```
[R/markdownLink.R:27:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L27) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(url)
    ^~~~~~~~~~~~~~~~~~
```
[R/markdownLink.R:28:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L28) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
    assertIsAStringOrNULL(title)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/markdownLink.R:40:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L40) *style:* **Variable or function name should be snake_case.**
```r
mdLink <- markdownLink
^~~~~~
```
[R/markdownList.R:17:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L17) *style:* **Variable or function name should be snake_case.**
```r
markdownList <- function(
^~~~~~~~~~~~
```
[R/markdownList.R:22:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L22) *warning:* **no visible global function definition for ‘assert_is_atomic’**
```r
    assert_is_atomic(text)
    ^~~~~~~~~~~~~~~~
```
[R/markdownList.R:24:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L24) *warning:* **no visible global function definition for ‘assert_all_are_not_na’**
```r
    assert_all_are_not_na(text)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/markdownList.R:25:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L25) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
    assert_all_are_non_missing_nor_empty_character(text)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/markdownList.R:26:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L26) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(ordered)
    ^~~~~~~~~~~~~~~~
```
[R/markdownList.R:27:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L27) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(asis)
    ^~~~~~~~~~~~~~~~
```
[R/markdownList.R:58:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L58) *style:* **Variable or function name should be snake_case.**
```r
mdList <- markdownList
^~~~~~
```
[R/markdownPlotlist.R:21:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L21) *style:* **Variable or function name should be snake_case.**
```r
markdownPlotlist <- function(
^~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:23:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L23) *style:* **Variable or function name should be snake_case.**
```r
    headerLevel = 2L
    ^~~~~~~~~~~
```
[R/markdownPlotlist.R:25:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L25) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
    assert_is_list(plotlist)
    ^~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:26:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L26) *warning:* **no visible global function definition for ‘assert_has_names’**
```r
    assert_has_names(plotlist)
    ^~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:27:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L27) *warning:* **no visible global function definition for ‘assertIsHeaderLevel’**
```r
    assertIsHeaderLevel(headerLevel)
    ^~~~~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:32:36:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L32) *style:* **Variable or function name should be snake_case.**
```r
        FUN = function(name, plot, headerLevel) {
                                   ^~~~~~~~~~~
```
[R/markdownPlotlist.R:33:13:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L33) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
            assert_is_a_string(name)
            ^~~~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:34:13:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L34) *warning:* **no visible global function definition for ‘markdownHeader’**
```r
            markdownHeader(name, level = headerLevel, asis = TRUE)
            ^~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:46:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L46) *style:* **Variable or function name should be snake_case.**
```r
mdPlotlist <- markdownPlotlist
^~~~~~~~~~
```
[R/markdownTables.R:23:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L23) *style:* **Variable or function name should be snake_case.**
```r
markdownTables <- function(
^~~~~~~~~~~~~~
```
[R/markdownTables.R:28:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L28) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
    assert_is_list(list)
    ^~~~~~~~~~~~~~
```
[R/markdownTables.R:29:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L29) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(captions)
    ^~~~~~~~~~~~~~~~~~~
```
[R/markdownTables.R:30:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L30) *warning:* **no visible global function definition for ‘assert_are_same_length’**
```r
    assert_are_same_length(list, captions)
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/markdownTables.R:31:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L31) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(force)
    ^~~~~~~~~~~~~~~~
```
[R/markdownTables.R:32:15:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L32) *warning:* **no visible binding for global variable ‘opts_knit’**
```r
    output <- opts_knit[["get"]]("rmarkdown.pandoc.to")
              ^~~~~~~~~
```
[R/markdownTables.R:38:17:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L38) *warning:* **no visible global function definition for ‘kable’, Did you mean 'table'?**
```r
                kable(x, caption = caption)
                ^~~~~
```
[R/markdownTables.R:43:9:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L43) *warning:* **no visible global function definition for ‘asis_output’**
```r
        asis_output(tables)
        ^~~~~~~~~~~
```
[R/package.R:4:3:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/package.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/prepareTemplate.R:42:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L42) *style:* **Variable or function name should be snake_case.**
```r
prepareTemplate <- function(
^~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:45:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L45) *style:* **Variable or function name should be snake_case.**
```r
    sourceDir = NULL,
    ^~~~~~~~~
```
[R/prepareTemplate.R:48:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L48) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(package)
    ^~~~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:49:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L49) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(package, rownames(installed.packages()))
    ^~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:50:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L50) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
    assertIsAStringOrNULL(sourceDir)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:51:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L51) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(overwrite)
    ^~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:57:9:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L57) *style:* **Variable or function name should be snake_case.**
```r
        sourceDir <- system.file(
        ^~~~~~~~~
```
[R/prepareTemplate.R:63:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L63) *warning:* **no visible global function definition for ‘assert_all_are_dirs’**
```r
    assert_all_are_dirs(sourceDir)
    ^~~~~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:67:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L67) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(files)
    ^~~~~~~~~~~~~~~~~~~
```


Fixes #90


Sorry, I little confused regarding the use of 'X'. I think the 'X=' is clearer than the '<-X--'. This line is missing the '=X'.


fread() returns size_t


Is there a reason we only support these 3 data types?


smbcli_write returns ssize_t


This should be size_t too


Hello?


Oh, it's you.


Successfully aliased the URL <https://distance-learning-lp-twdhawzgll.now.sh> to the following alias.

* https://lp.onlineschool.ru


Created multidev environment [rescue-x#oct-18](https://dashboard.pantheon.io/sites/c8430b75-4272-4aca-bfcd-206b12279315#oct-18).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://oct-18-rescue-x.pantheonsite.io/)


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The following doc(s) have been deployed to the [obickeaddi](https://obickeaddi-static-docs.pantheonsite.io/docs) Multidev environment:
- [/docs/drupal-cron](https://obickeaddi-static-docs.pantheonsite.io/docs/drupal-cron)


오키오키


On ne devrait pas encadrer le code avec une bordure


Replace text of message "greater than"  on  "greater than or equal to" according conditions


Could add small green star here to make this approved rev pending review completely different other pending reviews


gh


It was like this before I got here. I wondered the same thing myself, to be honest, and I’d prefer to allow it to be copiable.


# Specs execution successful
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
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If change BUILD_FINGERPRINT may do not pass SafetyNet


`/generic-worker` would be better, in case we introduce a `generic-worker` subfolder


What is the justification for adding a new float type? I mostly see added complexity, at no documented gain for that change. Having 2 different float types in the same FMU (or choosable ones for different use cases as well) will only add a lot of uncertainty and risk getting the same/similar results from different tools (or solvers for FMI-ME). Everybody at Modelon that understands numerical solvers thinks that this is a bad idea. Similarly for the new Integer types. Why four new types? If clocks really need a 64-bit Integer, fine, I might be convinced, but that is a long shot from 4 new types. The reasons and consequences for all these changes are actually quite different, so I'd consider it a good idea to split this ticket into several tickets.

In general: FMI has been successful because of its simplicity, both for exporters and importers. If we muck up FMI 3 so badly, that we end up with 10 instead of 100 implementers, we botched it completely. We are straying far from the path that has led us to success in the past.

Every change that leads to added complexity needs a very good justification. I have seen no justification so far to add a second type for Reals, and to add 4(!) integer types.


Good catch, I'll look at getting this updated.


Added more description to the initial prompt, and made it bigger


fixing quotes symbol alignment


just modify your package name..


ой, я другие изменения не смотрел. Да весь коммит такой - значит не опечатка, человек целенаправленно избегает умножения на 0. Видимо, что-то личное :)


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-151402 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-151402") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


> But it is not up to you two, is it?

This is not the place for this discussion and I won't have it here on GitHub, but between our inner- and inter-team discussions about maintaining the plugin as well as conversations at the UM architecture guild, this is the decision we reached. I'm not really interested in hashing it out again in GitHub comments, sorry.


hjgdgsyjfhbjfge


added


Same here, why does artifact download depend on engine?


This change will cause you problems. The variable already accepts a list of CIDR blocks and terraform does not support passing lists to and from modules very well


Why is this related to the docker engine?


Brilliant fix name... got me to look!  ;)


[R/pheatmap-internal.R:1:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L1) *style:* **Variable or function name should be snake_case.**
```r
.emptyPheatmapAnnotations <- list(
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:10:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L10) *style:* **Variable or function name should be snake_case.**
```r
.pheatmapAnnotations <- function(
^~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:13:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L13) *style:* **Variable or function name should be snake_case.**
```r
    legendColor
    ^~~~~~~~~~~
```
[R/pheatmap-internal.R:16:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L16) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(blacklist)
    ^~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:17:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L17) *warning:* **no visible global function definition for ‘assertIsHexColorFunctionOrNULL’**
```r
    assertIsHexColorFunctionOrNULL(legendColor)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:20:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L20) *warning:* **no visible global function definition for ‘colData’**
```r
    data <- colData(object)
            ^~~~~~~
```
[R/pheatmap-internal.R:21:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L21) *style:* **Variable or function name should be snake_case.**
```r
    interestingGroups <- interestingGroups(object)
    ^~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:29:16:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L29) *warning:* **no visible binding for global variable ‘.emptyPheatmapAnnotations’**
```r
        return(.emptyPheatmapAnnotations)
               ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:32:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L32) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
    assertHasRownames(data)
    ^~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:51:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L51) *style:* **Variable or function name should be snake_case.**
```r
    hasLevels <- vapply(
    ^~~~~~~~~
```
[R/pheatmap-internal.R:61:16:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L61) *warning:* **no visible binding for global variable ‘.emptyPheatmapAnnotations’**
```r
        return(.emptyPheatmapAnnotations)  # nocov
               ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:74:17:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L74) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
                assert_is_factor(x)
                ^~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:96:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L96) *style:* **Variable or function name should be snake_case.**
```r
.pheatmapArgs <- function(args) {
^~~~~~~~~~~~~
```
[R/pheatmap-internal.R:97:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L97) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
    assert_is_list(args)
    ^~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:98:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L98) *warning:* **no visible global function definition for ‘assert_has_names’**
```r
    assert_has_names(args)
    ^~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:100:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L100) *style:* **Variable or function name should be snake_case.**
```r
    invalidNames <- grep("[._]", names(args), value = TRUE)
    ^~~~~~~~~~~~
```
[R/pheatmap-internal.R:107:20:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L107) *warning:* **no visible global function definition for ‘snake’, Did you mean 'save'?**
```r
    names(args) <- snake(names(args))
                   ^~~~~
```
[R/pheatmap-internal.R:108:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L108) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(names(args), formalArgs(pheatmap))
    ^~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:108:46:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L108) *warning:* **no visible binding for global variable ‘pheatmap’, Did you mean 'heatmap'?**
```r
    assert_is_subset(names(args), formalArgs(pheatmap))
                                             ^~~~~~~~
```
[R/pheatmap-internal.R:109:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L109) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
    assert_has_no_duplicates(names(args))
    ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:116:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L116) *style:* **Variable or function name should be snake_case.**
```r
.pheatmapColorPalette <- function(color = NULL, n = 256L) {
^~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:120:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L120) *warning:* **no visible global function definition for ‘assert_all_are_hex_colors’**
```r
        assert_all_are_hex_colors(color)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:125:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L125) *warning:* **no visible global function definition for ‘assertIsHexColorFunctionOrNULL’**
```r
        assertIsHexColorFunctionOrNULL(color)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/pheatmap-internal.R:129:30:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/pheatmap-internal.R#L129) *warning:* **no visible global function definition for ‘brewer.pal’**
```r
        colorRampPalette(rev(brewer.pal(n = 7L, name = "RdYlBu")))(n)
                             ^~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:39:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L39) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:41:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L41) *style:* **Variable or function name should be snake_case.**
```r
        countsAxisLabel = "counts"
        ^~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:44:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L44) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:45:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L45) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(n)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:46:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L46) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:50:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L50) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:51:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L51) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(trans)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:52:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L52) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(countsAxisLabel)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:54:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L54) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData(object)
        ^~~~~~~
```
[R/plotCountsPerBiotype-methods.R:59:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L59) *style:* **Variable or function name should be snake_case.**
```r
            biotypeCol <- "transcriptBiotype"
            ^~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:61:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L61) *style:* **Variable or function name should be snake_case.**
```r
            biotypeCol <- "geneBiotype"
            ^~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:63:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L63) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(biotypeCol, colnames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:79:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L79) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:104:21:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L104) *warning:* **no visible global function definition for ‘rename’, Did you mean 'unname'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                    ^~~~~~
```
[R/plotCountsPerBiotype-methods.R:104:36:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L104) *warning:* **no visible global function definition for ‘sym’, Did you mean 'sum'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                                   ^~~
```
[R/plotCountsPerBiotype-methods.R:104:36:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L104) *warning:* **no visible global function definition for ‘sym’, Did you mean 'sum'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                                   ^~~
```
[R/plotCountsPerBiotype-methods.R:104:52:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L104) *warning:* **no visible global function definition for ‘:=’, Did you mean ':'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                                                   ^~
```
[R/plotCountsPerBiotype-methods.R:180:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L180) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:182:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L182) *style:* **Variable or function name should be snake_case.**
```r
        countsAxisLabel = "counts"
        ^~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:185:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L185) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:186:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L186) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:190:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L190) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:191:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L191) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(trans)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:192:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L192) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(countsAxisLabel)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:194:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L194) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData(object)
        ^~~~~~~
```
[R/plotCountsPerBiotype-methods.R:197:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L197) *style:* **Variable or function name should be snake_case.**
```r
        biotypeCol <- "broadClass"
        ^~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:198:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L198) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(biotypeCol, colnames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:212:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L212) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/plotCountsPerBiotype-methods.R:236:21:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L236) *warning:* **no visible global function definition for ‘rename’, Did you mean 'unname'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                    ^~~~~~
```
[R/plotCountsPerBiotype-methods.R:236:36:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L236) *warning:* **no visible global function definition for ‘sym’, Did you mean 'sum'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                                   ^~~
```
[R/plotCountsPerBiotype-methods.R:236:36:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L236) *warning:* **no visible global function definition for ‘sym’, Did you mean 'sum'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                                   ^~~
```
[R/plotCountsPerBiotype-methods.R:236:52:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerBiotype-methods.R#L236) *warning:* **no visible global function definition for ‘:=’, Did you mean ':'?**
```r
            data <- rename(data, !!sym("sampleID") := !!sym("colname"))
                                                   ^~
```
[R/plotCountsPerGene-methods.R:31:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L31) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:37:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L37) *style:* **Variable or function name should be snake_case.**
```r
        countsAxisLabel = "counts",
        ^~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:41:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L41) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:42:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L42) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:46:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L46) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:49:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L49) *warning:* **no visible global function definition for ‘assertIsFillScaleDiscreteOrNULL’**
```r
        assertIsFillScaleDiscreteOrNULL(fill)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:50:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L50) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(flip)
        ^~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:51:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L51) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(countsAxisLabel)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:52:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L52) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(title)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:70:14:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L70) *warning:* **no visible global function definition for ‘ggplot’, Did you mean 'biplot'?**
```r
        p <- ggplot(data = data)
             ^~~~~~
```
[R/plotCountsPerGene-methods.R:124:22:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L124) *warning:* **no visible global function definition for ‘coord_flip’**
```r
            p <- p + coord_flip()
                     ^~~~~~~~~~
```
[R/plotCountsPerGene-methods.R:128:22:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotCountsPerGene-methods.R#L128) *warning:* **no visible global function definition for ‘guides’**
```r
            p <- p + guides(color = FALSE, fill = FALSE)
                     ^~~~~~
```
[R/plotGenderMarkers-methods.R:22:21:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenderMarkers-methods.R#L22) *warning:* **no visible binding for global variable ‘object’, Did you mean 'objects'?**
```r
        validObject(object)
                    ^~~~~~
```
[R/plotGenderMarkers-methods.R:25:30:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenderMarkers-methods.R#L25) *warning:* **no visible binding for global variable ‘object’, Did you mean 'objects'?**
```r
        organism <- organism(object)
                             ^~~~~~
```
[R/plotGenderMarkers-methods.R:33:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenderMarkers-methods.R#L33) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
        assert_is_list(markers)
        ^~~~~~~~~~~~~~
```
[R/plotGenderMarkers-methods.R:36:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenderMarkers-methods.R#L36) *style:* **Variable or function name should be snake_case.**
```r
        supportedOrganisms <- names(markers) %>%
        ^~~~~~~~~~~~~~~~~~
```
[R/plotGenderMarkers-methods.R:47:29:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenderMarkers-methods.R#L47) *warning:* **no visible global function definition for ‘camel’, Did you mean 'call'?**
```r
        markers <- markers[[camel(organism)]]
                            ^~~~~
```
[R/plotGenderMarkers-methods.R:48:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenderMarkers-methods.R#L48) *warning:* **no visible global function definition for ‘assert_is_tbl_df’**
```r
        assert_is_tbl_df(markers)
        ^~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:41:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L41) *style:* **Variable or function name should be snake_case.**
```r
.plotGeneFacet <- function(
^~~~~~~~~~~~~~
```
[R/plotGene-methods.R:43:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L43) *style:* **Variable or function name should be snake_case.**
```r
    countsAxisLabel = "counts",
    ^~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:44:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L44) *style:* **Variable or function name should be snake_case.**
```r
    medianLine = TRUE,
    ^~~~~~~~~~
```
[R/plotGene-methods.R:48:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L48) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
    assert_is_all_of(object, "SummarizedExperiment")
    ^~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:49:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L49) *style:* **Variable or function name should be snake_case.**
```r
    interestingGroups <- interestingGroups(object)
    ^~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:52:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L52) *warning:* **no visible global function definition for ‘meltCounts’**
```r
    data <- meltCounts(object)
            ^~~~~~~~~~
```
[R/plotGene-methods.R:74:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L74) *warning:* **no visible binding for global variable ‘.geneMedianLine’**
```r
        p <- p + .geneMedianLine
                 ^~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:82:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L82) *warning:* **no visible global function definition for ‘guides’**
```r
        p <- p + guides(color = FALSE)
                 ^~~~~~
```
[R/plotGene-methods.R:90:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L90) *style:* **Variable or function name should be snake_case.**
```r
.plotGeneWide <- function(
^~~~~~~~~~~~~
```
[R/plotGene-methods.R:92:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L92) *style:* **Variable or function name should be snake_case.**
```r
    countsAxisLabel = "counts",
    ^~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:93:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L93) *style:* **Variable or function name should be snake_case.**
```r
    medianLine = TRUE,
    ^~~~~~~~~~
```
[R/plotGene-methods.R:97:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L97) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
    assert_is_all_of(object, "SummarizedExperiment")
    ^~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:98:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L98) *style:* **Variable or function name should be snake_case.**
```r
    interestingGroups <- interestingGroups(object)
    ^~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:101:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L101) *warning:* **no visible global function definition for ‘meltCounts’**
```r
    data <- meltCounts(object)
            ^~~~~~~~~~
```
[R/plotGene-methods.R:122:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L122) *warning:* **no visible binding for global variable ‘.geneMedianLine’**
```r
        p <- p + .geneMedianLine
                 ^~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:140:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L140) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:141:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L141) *style:* **Variable or function name should be snake_case.**
```r
        countsAxisLabel = "counts",
        ^~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:142:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L142) *style:* **Variable or function name should be snake_case.**
```r
        medianLine = TRUE,
        ^~~~~~~~~~
```
[R/plotGene-methods.R:149:19:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L149) *warning:* **no visible global function definition for ‘as.SummarizedExperiment’**
```r
        object <- as.SummarizedExperiment(object)
                  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:150:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L150) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
        assert_is_character(genes)
        ^~~~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:152:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L152) *warning:* **no visible global function definition for ‘assert_all_are_in_closed_range’**
```r
        assert_all_are_in_closed_range(length(genes), lower = 1L, upper = 20L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:153:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L153) *warning:* **no visible global function definition for ‘mapGenesToRownames’**
```r
        genes <- mapGenesToRownames(object, genes = genes, strict = FALSE)
                 ^~~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:154:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L154) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:155:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L155) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:159:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L159) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:160:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L160) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(medianLine)
        ^~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:161:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L161) *warning:* **no visible global function definition for ‘assertIsColorScaleDiscreteOrNULL’**
```r
        assertIsColorScaleDiscreteOrNULL(color)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:162:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L162) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(legend)
        ^~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:166:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L166) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        assay <- assays(object)[[assay]]
                 ^~~~~~
```
[R/plotGene-methods.R:167:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L167) *warning:* **no visible global function definition for ‘assays<-’**
```r
        assays(object) <- list(assay = assay)
        ^~~~~~
```
[R/plotGene-methods.R:172:19:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L172) *warning:* **no visible global function definition for ‘convertGenesToSymbols’**
```r
        object <- convertGenesToSymbols(object)
                  ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotGene-methods.R:176:21:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L176) *warning:* **no visible binding for global variable ‘.plotGeneFacet’**
```r
            what <- .plotGeneFacet
                    ^~~~~~~~~~~~~~
```
[R/plotGene-methods.R:178:21:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGene-methods.R#L178) *warning:* **no visible binding for global variable ‘.plotGeneWide’**
```r
            what <- .plotGeneWide
                    ^~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:24:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L24) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:26:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L26) *style:* **Variable or function name should be snake_case.**
```r
        minCounts = 1L,
        ^~~~~~~~~
```
[R/plotGenesDetected-methods.R:32:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L32) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:33:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L33) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:37:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L37) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:38:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L38) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(limit)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:39:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L39) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
        assert_all_are_non_negative(limit)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:40:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L40) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(minCounts)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:41:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L41) *warning:* **no visible global function definition for ‘assert_all_are_in_range’**
```r
        assert_all_are_in_range(minCounts, lower = 1L, upper = Inf)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:42:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L42) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
        assert_all_are_non_negative(minCounts)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:43:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L43) *warning:* **no visible global function definition for ‘assertIsFillScaleDiscreteOrNULL’**
```r
        assertIsFillScaleDiscreteOrNULL(fill)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:44:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L44) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(flip)
        ^~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:45:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L45) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(title)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:47:19:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L47) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        counts <- assays(object)[[assay]]
                  ^~~~~~
```
[R/plotGenesDetected-methods.R:48:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L48) *style:* **Variable or function name should be snake_case.**
```r
        geneCount <- colSums(counts >= minCounts)
        ^~~~~~~~~
```
[R/plotGenesDetected-methods.R:73:22:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L73) *warning:* **no visible global function definition for ‘basejump_geom_abline’**
```r
            p <- p + basejump_geom_abline(yintercept = limit)
                     ^~~~~~~~~~~~~~~~~~~~
```
[R/plotGenesDetected-methods.R:81:22:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L81) *warning:* **no visible global function definition for ‘coord_flip’**
```r
            p <- p + coord_flip()
                     ^~~~~~~~~~
```
[R/plotGenesDetected-methods.R:85:22:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotGenesDetected-methods.R#L85) *warning:* **no visible global function definition for ‘guides’**
```r
            p <- p + guides(fill = FALSE)
                     ^~~~~~
```
[R/plotHeatmap-methods.R:115:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L115) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:117:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L117) *style:* **Variable or function name should be snake_case.**
```r
        clusterRows = TRUE,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:118:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L118) *style:* **Variable or function name should be snake_case.**
```r
        clusterCols = TRUE,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:119:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L119) *style:* **Variable or function name should be snake_case.**
```r
        showRownames = FALSE,
        ^~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:120:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L120) *style:* **Variable or function name should be snake_case.**
```r
        showColnames = TRUE,
        ^~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:121:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L121) *style:* **Variable or function name should be snake_case.**
```r
        treeheightRow = 0L,
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:122:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L122) *style:* **Variable or function name should be snake_case.**
```r
        treeheightCol = 50L,
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:124:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L124) *style:* **Variable or function name should be snake_case.**
```r
        legendColor = viridis::viridis,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:125:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L125) *style:* **Variable or function name should be snake_case.**
```r
        borderColor = NULL,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:130:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L130) *warning:* **no visible global function definition for ‘assert_all_are_greater_than’**
```r
        assert_all_are_greater_than(nrow(object), 1L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:131:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L131) *warning:* **no visible global function definition for ‘assert_all_are_greater_than’**
```r
        assert_all_are_greater_than(ncol(object), 1L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:132:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L132) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:133:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L133) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:138:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L138) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
            interestingGroups(object) <- interestingGroups
            ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:141:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L141) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(clusterCols)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:142:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L142) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(clusterRows)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:143:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L143) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(showColnames)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:144:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L144) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(showRownames)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:145:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L145) *warning:* **no visible global function definition for ‘assert_is_a_number’**
```r
        assert_is_a_number(treeheightRow)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:146:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L146) *warning:* **no visible global function definition for ‘assert_is_a_number’**
```r
        assert_is_a_number(treeheightCol)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:147:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L147) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
        assert_all_are_non_negative(treeheightRow, treeheightCol)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:148:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L148) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(borderColor)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:150:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L150) *style:* **Variable or function name should be snake_case.**
```r
            borderColor <- NA
            ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:152:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L152) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(title)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:158:19:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L158) *warning:* **no visible global function definition for ‘convertGenesToSymbols’**
```r
        object <- convertGenesToSymbols(object)
                  ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:161:26:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L161) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        mat <- as.matrix(assays(object)[[assay]])
                         ^~~~~~
```
[R/plotHeatmap-methods.R:174:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L174) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
        assert_is_list(x)
        ^~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:179:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L179) *style:* **Variable or function name should be snake_case.**
```r
        annotationCol <- x[["annotationCol"]]
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:180:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L180) *style:* **Variable or function name should be snake_case.**
```r
        annotationColors <- x[["annotationColors"]]
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:183:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L183) *warning:* **no visible global function definition for ‘.pheatmapColorPalette’**
```r
        color <- .pheatmapColorPalette(color)
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:186:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L186) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- tryCatch(
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:217:17:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L217) *warning:* **no visible global function definition for ‘.pheatmapArgs’**
```r
        args <- .pheatmapArgs(args)
                ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:218:24:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L218) *warning:* **no visible binding for global variable ‘pheatmap’, Did you mean 'heatmap'?**
```r
        do.call(what = pheatmap, args = args)
                       ^~~~~~~~
```
[R/plotHeatmap-methods.R:227:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L227) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:229:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L229) *style:* **Variable or function name should be snake_case.**
```r
        clusteringMethod = "ward.D2",
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:230:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L230) *style:* **Variable or function name should be snake_case.**
```r
        showRownames = TRUE,
        ^~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:231:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L231) *style:* **Variable or function name should be snake_case.**
```r
        showColnames = TRUE,
        ^~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:232:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L232) *style:* **Variable or function name should be snake_case.**
```r
        treeheightRow = 0L,
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:233:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L233) *style:* **Variable or function name should be snake_case.**
```r
        treeheightCol = 50L,
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:235:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L235) *style:* **Variable or function name should be snake_case.**
```r
        legendColor = viridis::viridis,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:236:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L236) *style:* **Variable or function name should be snake_case.**
```r
        borderColor = NULL,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:241:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L241) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:242:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L242) *warning:* **no visible global function definition for ‘assert_all_are_greater_than’**
```r
        assert_all_are_greater_than(nrow(object), 1L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:243:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L243) *warning:* **no visible global function definition for ‘assert_all_are_greater_than’**
```r
        assert_all_are_greater_than(ncol(object), 1L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:244:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L244) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:249:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L249) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
            interestingGroups(object) <- interestingGroups
            ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:252:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L252) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(clusteringMethod)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:253:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L253) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(showColnames)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:254:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L254) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(showRownames)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:255:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L255) *warning:* **no visible global function definition for ‘assert_is_a_number’**
```r
        assert_is_a_number(treeheightRow)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:256:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L256) *warning:* **no visible global function definition for ‘assert_is_a_number’**
```r
        assert_is_a_number(treeheightCol)
        ^~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:257:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L257) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
        assert_all_are_non_negative(treeheightRow, treeheightCol)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:258:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L258) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(borderColor)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:260:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L260) *style:* **Variable or function name should be snake_case.**
```r
            borderColor <- NA
            ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:269:26:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L269) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        mat <- as.matrix(assays(object)[[assay]])
                         ^~~~~~
```
[R/plotHeatmap-methods.R:277:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L277) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
        assert_is_list(x)
        ^~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:282:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L282) *style:* **Variable or function name should be snake_case.**
```r
        annotationCol <- x[["annotationCol"]]
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:283:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L283) *style:* **Variable or function name should be snake_case.**
```r
        annotationColors <- x[["annotationColors"]]
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:286:18:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L286) *warning:* **no visible global function definition for ‘.pheatmapColorPalette’**
```r
        color <- .pheatmapColorPalette(color)
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:289:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L289) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- tryCatch(
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:321:17:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L321) *warning:* **no visible global function definition for ‘.pheatmapArgs’**
```r
        args <- .pheatmapArgs(args)
                ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:326:24:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L326) *warning:* **no visible binding for global variable ‘pheatmap’, Did you mean 'heatmap'?**
```r
        do.call(what = pheatmap, args = args)
                       ^~~~~~~~
```
[R/plotHeatmap-methods.R:331:1:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L331) *style:* **Variable or function name should be snake_case.**
```r
.quantileBreaks <- function(object, n = 10L) {
^~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:332:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L332) *warning:* **no visible global function definition for ‘assert_is_matrix’**
```r
    assert_is_matrix(object)
    ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:333:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L333) *warning:* **no visible global function definition for ‘assert_is_an_integer’**
```r
    assert_is_an_integer(n)
    ^~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:334:5:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L334) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(n)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:345:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L345) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups = NULL,
        ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:347:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L347) *style:* **Variable or function name should be snake_case.**
```r
        clusterRows = TRUE,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:348:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L348) *style:* **Variable or function name should be snake_case.**
```r
        clusterCols = TRUE,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:349:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L349) *style:* **Variable or function name should be snake_case.**
```r
        showRownames = FALSE,
        ^~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:350:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L350) *style:* **Variable or function name should be snake_case.**
```r
        showColnames = TRUE,
        ^~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:351:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L351) *style:* **Variable or function name should be snake_case.**
```r
        treeheightRow = 0L,
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:352:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L352) *style:* **Variable or function name should be snake_case.**
```r
        treeheightCol = 50L,
        ^~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:354:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L354) *style:* **Variable or function name should be snake_case.**
```r
        legendColor = viridis::viridis,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:356:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L356) *style:* **Variable or function name should be snake_case.**
```r
        borderColor = NULL,
        ^~~~~~~~~~~
```
[R/plotHeatmap-methods.R:361:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L361) *warning:* **no visible global function definition for ‘assert_all_are_greater_than’**
```r
        assert_all_are_greater_than(nrow(object), 1L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:362:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L362) *warning:* **no visible global function definition for ‘assert_all_are_greater_than’**
```r
        assert_all_are_greater_than(ncol(object), 1L)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:363:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L363) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:364:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L364) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- matchInterestingGroups(
        ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:369:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L369) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
            interestingGroups(object) <- interestingGroups
            ^~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:371:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L371) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(n)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:373:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L373) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(clusterCols)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:374:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L374) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(clusterRows)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:375:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L375) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(legend)
        ^~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:376:9:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L376) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
        assertIsAStringOrNULL(borderColor)
        ^~~~~~~~~~~~~~~~~~~~~
```
[R/plotHeatmap-methods.R:378:13:](https://github.com/steinbaugh/basejump.plots/blob/5cad29a4026ee432d9773d86295052ca6530b667/R/plotHeatmap-methods.R#L378) *style:* **Variable or function name should be snake_case.**
```r
            borderColor <- NA
            ^~~~~~~~~~~
```


Thanks for the quick release. 🙏


If you get to a place where bigger examples would be nice, feel free to try out chacha20 from [this branch](https://github.com/mit-plv/bedrock2/tree/chacha20). It's called WIP because I've never run it or tested whether it correctly implements chacha, but it should be just another program.


Это защита от "null value multiplication error". :)


add


Pa sto da ne, mislim basic primercic, ne bas najsjajniji na svetu, ali ok :D


Why if you have pocket mode and a rear fingerprint sensor? :P


a


**Marge**


aaaaa


On Wed, 31 Oct 2018 at 23:20, vchong <notifications@github.com> wrote:

> Hi @liuyq <https://github.com/liuyq> Can you please make this conditional
> on existence of the prebuilt?
> Something like
>
> if [ -f prebuilts/build-tools/linux-x86/bin/make ]; then
>    MAKE_CMD = prebuilts/build-tools/linux-x86/bin/make
> else
>    MAKE_CMD = $(MAKE) #? not sure about this one
> fi
>
> Anyway, this is because P doesn't have
> prebuilts/build-tools/linux-x86/bin/make but we still patch it with
> optee-master-workarounds.
>
thanks for pointing this out, will update
--
Best Regards,
Yongqin Liu
---------------------------------------------------------------
#mailing list
linaro-android@lists.linaro.org <linaro-dev@lists.linaro.org>
http://lists.linaro.org/mailman/listinfo/linaro-android


Yay! Vali Party!


+helmet Eli

(Fucked up the Commit desc as I'm an idiot).


Missing return value, I think it should be `export function useObservable<T>(initialValue: T): T`


@mikefab I want to point out that there's already the Gitter badge on the README (see screenshot below), hence you don't need to add this line.

![image](https://user-images.githubusercontent.com/24497961/47798743-54aa0580-dcff-11e8-8f60-4261e317b91c.png)


No because the previous change was also without revbump.
On a revbump we'll need to handle `x86_64-musl` by cross compiling once `cross-x86_64-linux-musl` has gnat, i.e. #4312 is fixed and merged.


@MSeeker1340 do you have an idea for how to automatically go to `lu` if sparse? It would be nice to have a "complicated but useful" default.


Это значит что я сдал?)

ср, 31 окт. 2018 г. в 14:43, Олег Дутченко <notifications@github.com>:

> Принял!
>
> [image: image]
> <https://user-images.githubusercontent.com/16334642/47788765-5255a480-dd1b-11e8-9901-38a464dc8c4e.png>
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/ValeriyMinyaylo/k15-exam/commit/5de97dbdb716b46627892143b2b7c6eae0170df1#commitcomment-31119291>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AoGOBecLn095WBJCphX2yp1O0c3HFo8aks5uqZsAgaJpZM4YC8OF>
> .
>


check this one please


ok


$delta is undefined here; since the voucher export is not related to it, check if the DataExporter needs $delta to be set or it already uses a default value(like false); if it expects a value => set it to false; if not => do not set it.


Maybe we should keep `LinSolveFactorize` clean and hardcode a different default.


This is much more efficient code!


webkit is failing to patch.  Maybe a patch should have been removed during the commit?
Don't fix, trying to publish repo.


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-152655 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-152655") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


maybe this removal should be in its own commit?


are you sure this is the action for the voucher exporter?


Well I think you just need to check for the existence of `useState` and if not present in react export, it should fallback to the original version.


@hubertus65, I totally agree that why have to provide a good justification for this extension and we've discussed this quite extensively at the FMI Design Meeting in Roanne. Please note that this initial draft is missing documentation and is not meant to be merged as-is.

The new integer types and  Float32 are there for efficient exchange of sensor and bus data. Values (e.g. states and derivatives) will stay Float64 (= current Real).


![1](https://user-images.githubusercontent.com/44646484/47799096-445f4e00-dd32-11e8-8cf0-83b287b35787.PNG)
![2](https://user-images.githubusercontent.com/44646484/47799097-445f4e00-dd32-11e8-9d3a-259928773d7a.PNG)
why i'm getting this error ?


not sure if the comment is relevant, i don't see any check for the nosuggest  thing


i added it


Ah sounds like a good idea, can I add you as a collaborator? Do you have time? 😄


ForeignKey лучше использовать с nameof


saw approval from vogel
at https://github.com/vogel/stellar-core/commit/0b41402053bc02b6bed6f06e8e0bdf1a8b261d36


merging vogel/stellar-core/fix-ioservice-balance = 0b414020 into auto


vogel/stellar-core/fix-ioservice-balance = 0b414020 merged ok, testing candidate = 7c64ccc7


well in the construct fromShopware_Plugins_Frontend_Boxalino_DataExporter , there is a $delta = false parameter so i thought it would set the $delta to false as default there, and yea, it does NEED it


Fix #860


Fixed, thanks!


建立可以放置影片的平台


We combined the I Ching, a more than 3000-year-old system of divination, with modern tech.

We found that specific combinations of hexagrams were a great solution for:
1. presenting cryptocurrency wallet addresses
2. offer the crypto industry its own specific visual encoding solution
3. provide a simple representation that can be used to print on hardware more easily
4. and provide an elegant graphic representation for any string of characters in any application

This is the first code we open source and it is aligned with our mission to to make internet and payments available for all.

We hope that you will find many applications for this code, make it evolve and that you will make the best use of it.

@michaanthenor
This wouldn't have been possible without the participation of @garrettekinsman  @moakq @vicidomini @developsoft @vikijan @youpdidou


Ah, I forgot about that. Yes, I should not call the lower steps in a hierarchical presentation "Substeps". Fixing.


Fixed #8


![](https://github.trello.services/images/mini-trello-icon.png) [Membuat form untuk cancel transaksi](https://trello.com/c/t4YNIvie/12-membuat-form-untuk-cancel-transaksi)


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-153358 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-153358") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


o/


why do you use 5 now, instead of the 10 before?


@jusjusjus Thanks for pointing that out. We do not think a license change is necessary since we give the user the option to build against FFTW in the Eigen backend. The flag is excluded as default. This means that the user has to download the FFTW library him-/herself and set the flag accordingly. This behavior is similar to the one found in Eigen (MPL licensed) where you have to specify the EIGEN_FFTW_DEFAULT flag.


Successfully aliased the URL <https://distributedsequencer-vjsntjotwh.now.sh> to the following alias.

* https://distseq.now.sh


Вместо листа используется виртуальный ICollection<T>


Fix #735


also changed px to em for resize ability across multiple devices.


achungo commited


@AdSchellevis looking at this backport commit now, is it correct to use "address" even if the type may not be populated by "content"?


Интересно наверное писать обертку на сериализатор, ну окей