[R/aggregate-methods.R:122:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L122) *style:* **Variable or function name should be snake_case.**
```r
.aggregateFuns <- c("sum", "mean")
^~~~~~~~~~~~~~
```
[R/aggregate-methods.R:127:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L127) *style:* **Variable or function name should be snake_case.**
```r
.aggregateMessage <- function(groupings, fun) {
^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:128:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L128) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
    assert_is_factor(groupings)
    ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:129:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L129) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(fun)
    ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:153:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L153) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:154:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L154) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:155:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L155) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(object), names(groupings))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L156) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:158:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L158) *warning:* **no visible global function definition for ‘.aggregateMessage’**
```r
        .aggregateMessage(groupings, fun = fun)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:220:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L220) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:221:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L221) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:222:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L222) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(object), names(groupings))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:223:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L223) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:225:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L225) *warning:* **no visible global function definition for ‘.aggregateMessage’**
```r
        .aggregateMessage(groupings, fun = fun)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:281:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L281) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:282:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L282) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(col)
        ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:286:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L286) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(rowData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:286:40:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L286) *warning:* **no visible global function definition for ‘rowData’**
```r
        assert_is_subset(col, colnames(rowData(object)))
                                       ^~~~~~~
```
[R/aggregate-methods.R:287:22:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L287) *warning:* **no visible global function definition for ‘rowData’**
```r
        groupings <- rowData(object)[[col]]
                     ^~~~~~~
```
[R/aggregate-methods.R:288:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L288) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:289:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L289) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:312:36:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L312) *warning:* **no visible global function definition for ‘emptyRanges’**
```r
            args[["rowRanges"]] <- emptyRanges(names = rownames)
                                   ^~~~~~~~~~~
```
[R/aggregate-methods.R:314:34:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L314) *warning:* **no visible global function definition for ‘DataFrame’**
```r
            args[["rowData"]] <- DataFrame(row.names = rownames)
                                 ^~~~~~~~~
```
[R/aggregate-methods.R:316:30:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L316) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
        se <- do.call(what = SummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:337:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L337) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:338:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L338) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(col)
        ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:342:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L342) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(colData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:342:40:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L342) *warning:* **no visible global function definition for ‘colData’**
```r
        assert_is_subset(col, colnames(colData(object)))
                                       ^~~~~~~
```
[R/aggregate-methods.R:343:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L343) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(sampleData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:344:22:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L344) *warning:* **no visible global function definition for ‘colData’**
```r
        groupings <- colData(object)[[col]]
                     ^~~~~~~
```
[R/aggregate-methods.R:345:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L345) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:346:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L346) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:364:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L364) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- sampleData(object)[["aggregate"]]
        ^~~~~~~~~~~
```
[R/aggregate-methods.R:365:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L365) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(sampleNames)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:366:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L366) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- levels(sampleNames)
        ^~~~~~~~~~~
```
[R/aggregate-methods.R:367:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L367) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- DataFrame(
        ^~~~~~~~~~
```
[R/aggregate-methods.R:378:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L378) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- setdiff(interestingGroups(object), "sampleName")
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:379:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L379) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/aggregate-methods.R:389:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L389) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
        assertHasRownames(sampleData)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:397:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L397) *warning:* **no visible global function definition for ‘rowRanges’**
```r
            args[["rowRanges"]] <- rowRanges(object)
                   ^~~~~~~~~
```
[R/aggregate-methods.R:399:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L399) *warning:* **no visible global function definition for ‘rowData’**
```r
            args[["rowData"]] <- rowData(object)
                   ^~~~~~~
```
[R/aggregate-methods.R:401:30:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L401) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
        se <- do.call(what = SummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:402:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L402) *warning:* **no visible global function definition for ‘metadata’**
```r
        metadata(se)[["aggregate"]] <- TRUE
        ^~~~~~~~
```
[R/aggregate-methods.R:402:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L402) *warning:* **no visible global function definition for ‘metadata<-’**
```r
        metadata(se)[["aggregate"]] <- TRUE
        ^~~~~~~~
```
[R/aggregate-methods.R:427:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L427) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(object)
        ^~~~~~~
```
[R/aggregate-methods.R:428:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L428) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(c("sampleID", "aggregate"), colnames(colData))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:429:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L429) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(colData[["aggregate"]])
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:463:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L463) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(names(groupings), colnames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:464:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L464) *warning:* **no visible global function definition for ‘colData<-’, Did you mean 'colData'?**
```r
        colData(object)[["aggregate"]] <- groupings
        ^~~~~~~
```
[R/aggregate-methods.R:472:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L472) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(rse, "RangedSummarizedExperiment")
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:475:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L475) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(rse)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘colData’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘colData<-’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:40:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘cell2sample’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
                                       ^~~~~~~~~~~
```
[R/cell2sample-methods.R:33:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/cell2sample-methods.R#L33) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset("sampleID", colnames(colData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/cell2sample-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/cell2sample-methods.R#L36) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(object)
        ^~~~~~~
```
[R/cell2sample-methods.R:40:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/cell2sample-methods.R#L40) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
            assert_is_factor(sample)
            ^~~~~~~~~~~~~~~~
```
[R/combine-methods.R:80:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L80) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(class(x), class(y))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:91:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L91) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(x), rownames(y))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:94:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L94) *warning:* **no visible global function definition for ‘assert_are_disjoint_sets’**
```r
        assert_are_disjoint_sets(colnames(x), colnames(y))
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:124:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L124) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
            assert_are_identical(rowRanges(x), rowRanges(y))
            ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:125:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L125) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- rowRanges(x)
            ^~~~~~~~~
```
[R/combine-methods.R:126:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L126) *style:* **Variable or function name should be snake_case.**
```r
            rowData <- NULL
            ^~~~~~~
```
[R/combine-methods.R:128:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L128) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
            assert_are_identical(rowData(x), rowData(y))
            ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:129:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L129) *style:* **Variable or function name should be snake_case.**
```r
            rowData <- rowData(x)
            ^~~~~~~
```
[R/combine-methods.R:130:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L130) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- NULL
            ^~~~~~~~~
```
[R/combine-methods.R:134:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L134) *warning:* **no visible global function definition for ‘assert_are_set_equal’**
```r
        assert_are_set_equal(colnames(colData(x)), colnames(colData(y)))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:136:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L136) *style:* **Variable or function name should be snake_case.**
```r
        colData <- rbind(
        ^~~~~~~
```
[R/combine-methods.R:155:30:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L155) *warning:* **no visible binding for global variable ‘makeSummarizedExperiment’**
```r
        se <- do.call(what = makeSummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L59) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
        assert_all_are_non_missing_nor_empty_character(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:60:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L60) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(gene2symbol, "Gene2Symbol")
        ^~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:121:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L121) *style:* **Variable and function names should not be longer than 30 characters.**
```r
convertGenesToSymbols.sparseMatrix <- convertGenesToSymbols.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:121:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L121) *style:* **Variable or function name should be snake_case.**
```r
convertGenesToSymbols.sparseMatrix <- convertGenesToSymbols.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:136:16:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L136) *warning:* **no visible global function definition for ‘Gene2Symbol’**
```r
        g2s <- Gene2Symbol(object)
               ^~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:138:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L138) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(symbols)
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:167:16:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L167) *warning:* **no visible global function definition for ‘Gene2Symbol’**
```r
        g2s <- Gene2Symbol(object)
               ^~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:172:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L172) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(g2s[["geneID"]])
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:22:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L22) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- sampleNames(object)
        ^~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:30:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L30) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
            assert_has_no_duplicates(colnames)
            ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:32:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L32) *warning:* **no visible global function definition for ‘colData’**
```r
            colData(object)[["sampleName"]] <- NULL
            ^~~~~~~
```
[R/convertSampleIDsToNames-methods.R:32:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L32) *warning:* **no visible global function definition for ‘colData<-’**
```r
            colData(object)[["sampleName"]] <- NULL
            ^~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:65:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L65) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
        assert_all_are_non_missing_nor_empty_character(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:66:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L66) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:67:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L67) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(tx2gene, "Tx2Gene")
        ^~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:102:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L102) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(aggregate)
        ^~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:111:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L111) *warning:* **no visible global function definition for ‘aggregateRows’**
```r
            aggregateRows(object, groupings = t2g)
            ^~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:130:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L130) *style:* **Variable and function names should not be longer than 30 characters.**
```r
convertTranscriptsToGenes.sparseMatrix <- convertTranscriptsToGenes.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:130:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L130) *style:* **Variable or function name should be snake_case.**
```r
convertTranscriptsToGenes.sparseMatrix <- convertTranscriptsToGenes.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:147:16:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L147) *warning:* **no visible global function definition for ‘Tx2Gene’**
```r
        t2g <- Tx2Gene(object)
               ^~~~~~~
```
[R/counts-methods.R:38:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L38) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset("counts", assayNames(object))
        ^~~~~~~~~~~~~~~~
```
[R/counts-methods.R:38:36:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L38) *warning:* **no visible global function definition for ‘assayNames’**
```r
        assert_is_subset("counts", assayNames(object))
                                   ^~~~~~~~~~
```
[R/counts-methods.R:39:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L39) *warning:* **no visible global function definition for ‘assays’**
```r
        assays(object)[["counts"]]
        ^~~~~~
```
[R/counts-methods.R:58:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L58) *warning:* **no visible global function definition for ‘assays’**
```r
        assays(object)[["counts"]] <- value
        ^~~~~~
```
[R/counts-methods.R:58:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L58) *warning:* **no visible global function definition for ‘assays<-’**
```r
        assays(object)[["counts"]] <- value
        ^~~~~~
```
[R/detectLanes.R:13:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L13) *style:* **Variable or function name should be snake_case.**
```r
detectLanes <- function(
^~~~~~~~~~~
```
[R/detectLanes.R:17:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L17) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(object)
    ^~~~~~~~~~~~~~~~~~~
```
[R/detectLanes.R:18:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L18) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(lanePattern)
    ^~~~~~~~~~~~~~~~~~
```
[R/detectLanes.R:18:24:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L18) *warning:* **no visible binding for global variable ‘lanePattern’**
```r
    assert_is_a_string(lanePattern)
                       ^~~~~~~~~~~
```
[R/detectLanes.R:21:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L21) *warning:* **no visible global function definition for ‘str_match’**
```r
        as.integer(str_match(object, pattern)[, 2L])
                   ^~~~~~~~~
```
[R/detectOrganism.R:51:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L51) *style:* **Variable or function name should be snake_case.**
```r
detectOrganism <- function(object) {
^~~~~~~~~~~~~~
```
[R/detectOrganism.R:52:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L52) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(object)
    ^~~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:60:14:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L60) *warning:* **no visible global function definition for ‘.detectOrganism.string’**
```r
        x <- .detectOrganism.string(object[[i]])
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:74:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L74) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(object)
        ^~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:82:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L82) *warning:* **no visible global function definition for ‘assert_is_tbl_df’**
```r
        assert_is_tbl_df(data)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:50:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L50) *style:* **Variable or function name should be snake_case.**
```r
        removeNA = TRUE,
        ^~~~~~~~
```
[R/geometricMean-methods.R:51:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L51) *style:* **Variable or function name should be snake_case.**
```r
        zeroPropagate = FALSE
        ^~~~~~~~~~~~~
```
[R/geometricMean-methods.R:53:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L53) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(removeNA)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:54:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L54) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(zeroPropagate)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:113:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L113) *style:* **Variable or function name should be snake_case.**
```r
geometricMean.sparseMatrix <- geometricMean.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:34:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L34) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(base)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L36) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
        assert_all_are_positive(base)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:57:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L57) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(base)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L59) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
        assert_all_are_positive(base)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:25:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L25) *style:* **Variable or function name should be snake_case.**
```r
makeSingleCellExperiment <- function(
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:27:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L27) *style:* **Variable or function name should be snake_case.**
```r
    rowRanges,
    ^~~~~~~~~
```
[R/makeSingleCellExperiment.R:28:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L28) *style:* **Variable or function name should be snake_case.**
```r
    colData,
    ^~~~~~~
```
[R/makeSingleCellExperiment.R:30:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L30) *style:* **Variable or function name should be snake_case.**
```r
    transgeneNames = NULL,
    ^~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L31) *style:* **Variable or function name should be snake_case.**
```r
    spikeNames = NULL
    ^~~~~~~~~~
```
[R/makeSingleCellExperiment.R:56:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L56) *warning:* **no visible global function definition for ‘isSpike<-’**
```r
            isSpike(sce, spikeNames[[i]]) <- spikeNames[[i]]
            ^~~~~~~
```
[R/makeSummarizedExperiment.R:104:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L104) *style:* **Variable or function name should be snake_case.**
```r
makeSummarizedExperiment <- function(
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:106:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L106) *style:* **Variable or function name should be snake_case.**
```r
    rowRanges = NULL,  # recommended
    ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:107:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L107) *style:* **Variable or function name should be snake_case.**
```r
    rowData = NULL,    # not recommended
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:108:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L108) *style:* **Variable or function name should be snake_case.**
```r
    colData = NULL,
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:110:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L110) *style:* **Variable or function name should be snake_case.**
```r
    transgeneNames = NULL,
    ^~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:111:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    spikeNames = NULL
    ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:118:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L118) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(rowRanges, classes = c("GRanges", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:119:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L119) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(rowData, classes = c("DataFrame", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:122:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L122) *warning:* **no visible global function definition for ‘assert_is_null’**
```r
        assert_is_null(rowData)
        ^~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:124:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L124) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(colData, classes = c("DataFrame", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:125:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L125) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(metadata, classes = c("list", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:126:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L126) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(transgeneNames, classes = c("character", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:127:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L127) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(spikeNames, classes = c("character", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:136:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L136) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
    assert_are_identical(names(assays)[[1L]], "counts")
    ^~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:141:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L141) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
    assertHasValidDimnames(assay)
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:148:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L148) *style:* **Variable or function name should be snake_case.**
```r
    mcolsNames <- NULL
    ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:155:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L155) *warning:* **no visible global function definition for ‘assert_are_intersecting_sets’**
```r
        assert_are_intersecting_sets(rownames(assay), names(rowRanges))
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L156) *style:* **Variable or function name should be snake_case.**
```r
        mcolsNames <- names(mcols(rowRanges))
        ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L156) *warning:* **no visible global function definition for ‘mcols’, Did you mean 'acos'?**
```r
        mcolsNames <- names(mcols(rowRanges))
        ^~~~~
```
[R/makeSummarizedExperiment.R:160:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L160) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
            assert_is_subset(transgeneNames, setdiff)
            ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:161:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L161) *style:* **Variable or function name should be snake_case.**
```r
            transgeneRanges <- emptyRanges(
            ^~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:166:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L166) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- suppressWarnings(c(transgeneRanges, rowRanges))
            ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:171:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L171) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
            assert_is_subset(spikeNames, setdiff)
            ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:172:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L172) *style:* **Variable or function name should be snake_case.**
```r
            spikeRanges <- emptyRanges(
            ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:177:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L177) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- suppressWarnings(c(spikeRanges, rowRanges))
            ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:181:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L181) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), rownames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:182:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L182) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData[rownames(assay), , drop = FALSE]
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:185:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L185) *style:* **Variable or function name should be snake_case.**
```r
        rowRanges <- emptyRanges(names = rownames(assay))
        ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:185:22:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L185) *warning:* **no visible global function definition for ‘emptyRanges’**
```r
        rowRanges <- emptyRanges(names = rownames(assay))
                     ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:194:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L194) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(is(data, "DataFrame"))
    ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:213:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L213) *warning:* **no visible global function definition for ‘assert_has_names’**
```r
        assert_has_names(rowRanges)
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:214:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L214) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), names(rowRanges))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:215:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L215) *style:* **Variable or function name should be snake_case.**
```r
        rowRanges <- rowRanges[rownames(assay)]
        ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:217:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L217) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
        assertHasRownames(rowData)
        ^~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:218:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L218) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), rownames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:219:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L219) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData[rownames(assay), , drop = FALSE]
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:224:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L224) *style:* **Variable or function name should be snake_case.**
```r
        colData <- DataFrame(row.names = colnames(assay))
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:224:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L224) *warning:* **no visible global function definition for ‘DataFrame’**
```r
        colData <- DataFrame(row.names = colnames(assay))
                   ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:226:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L226) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(colnames(assay), rownames(colData))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:227:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L227) *style:* **Variable or function name should be snake_case.**
```r
    colData <- colData[colnames(assay), , drop = FALSE]
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:232:25:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L232) *warning:* **no visible global function definition for ‘realpath’**
```r
    metadata[["wd"]] <- realpath(".")
                        ^~~~~~~~
```
[R/makeSummarizedExperiment.R:233:34:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L233) *warning:* **no visible global function definition for ‘session_info’, Did you mean 'sessionInfo'?**
```r
    metadata[["sessionInfo"]] <- session_info(include_base = TRUE)
                                 ^~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:247:26:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L247) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
    se <- do.call(what = SummarizedExperiment, args = args)
                         ^~~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:24:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L24) *style:* **Variable or function name should be snake_case.**
```r
mapCellsToSamples <- function(cells, samples) {
^~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:25:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L25) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(cells)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:26:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L26) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
    assert_has_no_duplicates(cells)
    ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:27:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L27) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(samples, c("character", "factor"))
    ^~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:39:41:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L39) *warning:* **no visible binding for global variable ‘barcodePattern’**
```r
        pattern <- paste0("^(", sample, barcodePattern)
                                        ^~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:57:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L57) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
    assert_are_identical(length(cells), length(cell2sample))
    ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:69:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L69) *style:* **Variable or function name should be snake_case.**
```r
.mapGenes <- function(object, genes, strict = TRUE) {
^~~~~~~~~
```
[R/mapGenes-methods.R:70:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L70) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
    assert_is_all_of(object, "Gene2Symbol")
    ^~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:72:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L72) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(genes)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:73:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L73) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(genes)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:74:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L74) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(strict)
    ^~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:80:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L80) *warning:* **no visible global function definition for ‘assertAllAreUniqueGeneNames’**
```r
        assertAllAreUniqueGeneNames(object, genes)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:109:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L109) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(mapped)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:150:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L150) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:209:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L209) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:268:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L268) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:18:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L18) *style:* **Variable or function name should be snake_case.**
```r
matchInterestingGroups <- function(object, interestingGroups = NULL) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:18:44:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L18) *style:* **Variable or function name should be snake_case.**
```r
matchInterestingGroups <- function(object, interestingGroups = NULL) {
                                           ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:20:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L20) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- interestingGroups(object, check = FALSE)
        ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:25:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L25) *style:* **Variable or function name should be snake_case.**
```r
            interestingGroups <- "sampleName"
            ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L28) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:30:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L30) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(interestingGroups)
    ^~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L31) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(interestingGroups)
    ^~~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:32:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L32) *style:* **Variable or function name should be snake_case.**
```r
        nonzeroGenes = FALSE,
        ^~~~~~~~~~~~
```
[R/meltCounts-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L36) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:37:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L37) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(nonzeroGenes)
        ^~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:41:19:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L41) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        counts <- assays(object)[[assay]]
                  ^~~~~~
```
[R/meltCounts-methods.R:42:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L42) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
        assert_is_non_empty(counts)
        ^~~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:61:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L61) *warning:* **no visible global function definition for ‘assert_is_function’**
```r
            assert_is_function(fun)
            ^~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:66:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L66) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/metrics-methods.R:81:17:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L81) *warning:* **no visible global function definition for ‘colData’**
```r
        data <- colData(object)
                ^~~~~~~
```
[R/metrics-methods.R:127:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L127) *warning:* **no visible global function definition for ‘assert_is_function’**
```r
        assert_is_function(FUN)
        ^~~~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:129:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L129) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(metrics, "grouped_df")
        ^~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:139:21:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L139) *warning:* **no visible global function definition for ‘select’**
```r
            data <- select(metrics, matches(pattern))
                    ^~~~~~
```
[R/metrics-methods.R:139:37:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L139) *warning:* **no visible global function definition for ‘matches’, Did you mean 'match'?**
```r
            data <- select(metrics, matches(pattern))
                                    ^~~~~~~
```
[R/metrics-methods.R:142:21:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L142) *warning:* **no visible global function definition for ‘select_if’**
```r
            data <- select_if(metrics, is.numeric)
                    ^~~~~~~~~
```
[R/metrics-methods.R:144:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L144) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
        assert_is_non_empty(data)
        ^~~~~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:145:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L145) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/microplate.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L31) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(plates)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:33:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L33) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(plates)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:35:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L35) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(wells)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:37:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L37) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(wells)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:38:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L38) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(wells, c(96L, 384L))
    ^~~~~~~~~~~~~~~~
```
[R/microplate.R:40:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L40) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(controls)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:42:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L42) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
    assert_all_are_non_negative(controls)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```


@TheLonelySheep this commit is on `master `whole the bot is currently built off `dev` so these changes haven't been applied yet


from Crypto.Cipher import AES

from Crypto.Random import get_random_bytes

from Crypto.Util.Padding import pad

import base64

def encrypt(plaintext, key, iv=b'0123456789abcdef'):

  cipher = AES.new(key.encode('utf8'), AES.MODE_CBC, iv)

  padded_data = pad(plaintext.encode('utf8'), cipher.block_size)

  ciphertext = cipher.encrypt(padded_data)

  return base64.b64encode(ciphertext).decode('utf8')

def decrypt(ciphertext, key, iv=b'0123456789abcdef'):

  cipher = AES.new(key.encode('utf8'), AES.MODE_CBC, iv)

  data = base64.b64decode(ciphertext)

  plaintext = cipher.decrypt(data)

  return plaintext.decode('utf8').rstrip()

print("Miresevini ne FIEK\n")

plaintext = raw_input("Shenoni tekstin per enkriptim: ")

key = raw_input ("Shenoni celesin prej 16 karaktereve per enkriptim: ")

ciphertext = encrypt(plaintext, key)

print"Teksti enkriptuar: ",ciphertext

plaintext = decrypt(ciphertext, key)

print "Teksti i dekriptuar: ",plaintext


I wasn't able to retrieve PDD puzzles from the code base and submit them to GitHub. If you think that it's a bug on our side, please submit it to [yegor256/0pdd](https://github.com/yegor256/0pdd/issues):

> undefined method `[]' for true:TrueClass

Please, copy and paste this stack trace to GitHub:

```
NoMethodError
undefined method `[]' for true:TrueClass
/app/objects/puzzles.rb:93:in `block in expose'
/app/objects/puzzles.rb:80:in `loop'
/app/objects/puzzles.rb:80:in `expose'
/app/objects/puzzles.rb:33:in `deploy'
/app/objects/job.rb:38:in `proceed'
/app/objects/job_starred.rb:33:in `proceed'
/app/objects/job_recorded.rb:32:in `proceed'
/app/objects/job_emailed.rb:35:in `proceed'
/app/objects/job_commiterrors.rb:36:in `proceed'
/app/objects/job_detached.rb:48:in `exclusive'
/app/objects/job_detached.rb:36:in `block in proceed'
/app/objects/job_detached.rb:36:in `fork'
/app/objects/job_detached.rb:36:in `proceed'
/app/0pdd.rb:347:in `block in <top (required)>'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1635:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1635:in `block in compile!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:992:in `block (3 levels) in route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1011:in `route_eval'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:992:in `block (2 levels) in route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1040:in `block in process_route'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1038:in `catch'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1038:in `process_route'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:990:in `block in route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:989:in `each'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:989:in `route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1097:in `block in dispatch!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `block in invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `catch'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1094:in `dispatch!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:924:in `block in call!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `block in invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `catch'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:924:in `call!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:913:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/xss_header.rb:18:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/path_traversal.rb:16:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/json_csrf.rb:26:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/base.rb:50:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/base.rb:50:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/frame_options.rb:31:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/logger.rb:15:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/common_logger.rb:33:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:231:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:224:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/head.rb:12:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/method_override.rb:22:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:194:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1957:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1502:in `block in call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1729:in `synchronize'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1502:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/handler/webrick.rb:86:in `service'
/app/vendor/ruby-2.5.1/lib/ruby/2.5.0/webrick/httpserver.rb:140:in `service'
/app/vendor/ruby-2.5.1/lib/ruby/2.5.0/webrick/httpserver.rb:96:in `run'
/app/vendor/ruby-2.5.1/lib/ruby/2.5.0/webrick/server.rb:307:in `block in start_thread'
```


ti shit


booking interface


owo you finally respond to something oof


Another code improvement was to group the code needed to ask the user to introduce the data.


Prior to this change it would be `public abstract void D.a1()`?


This may leave `driver_version` uninitialized, making the following condition have undefined result.


# 1.查看gradle console
![](https://i.imgur.com/RBETx5J.png)
点击该图标查看gradle console

# 2.点9图导致项目无法通过编译
通过查看gradle console 了解是点9图格式不对，强制改为普通png或者自己重新绘制点9图。


Created multidev environment [visualizing-faculty-research#pr-14](https://dashboard.pantheon.io/sites/3f330315-1192-4ce1-93ac-1446fdb4b97a#pr-14).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-14-visualizing-faculty-research.pantheonsite.io/)


brakuje Ci tutaj `/` przed nazwami mappingów


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-160543 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-160543") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


I wonder what these hard-coded values mean. Will they ever be used or is the for loop guaranteed to set their value?


Thanks @mackron! Just implemented it in commit https://github.com/raysan5/raylib/commit/f7667aad8dd03c1cdaa2033f7a37815b7dd1f9b4 and it works like a charm! Also reviewed in same commit the incongruences between `sampleCount` and `frameCount` and some issues with XM files playing.