[R/are_clock_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_clock_models.R#L10) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  if (is_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_clock_models.R#L12) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    if (!is_clock_model(i)) return(FALSE)
         ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_clock_models.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/are_clock_models.R:32:16:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_clock_models.R#L32) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    rlns[i] <- is_rln_clock_model(clock_models[[i]])
               ^~~~~~~~~~~~~~~~~~
```
[R/are_ids.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_ids.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  if (is_id(x)) return(TRUE)
      ^~~~~
```
[R/are_ids.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_ids.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
    if (!is_id(i)) return(FALSE)
         ^~~~~
```
[R/are_init_clock_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_init_clock_models.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  if (!are_clock_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~
```
[R/are_init_mrca_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_init_mrca_priors.R#L10) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  if (!are_mrca_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_site_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_init_site_models.R#L10) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  if (!are_site_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_tree_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_init_tree_priors.R#L10) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  if (!are_tree_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_initial_phylogenies.R:10:23:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_initial_phylogenies.R#L10) *warning:* **no visible global function definition for ‘is_phylo’**
```r
    if (!is.na(x) && !is_phylo(x)) return(FALSE)
                      ^~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_alignment_ids_in_fastas.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:15:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_alignment_ids_in_fastas.R#L15) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:16:21:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_alignment_ids_in_fastas.R#L16) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_names_in_fastas.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_names_in_fastas.R#L11) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_non_intersecting.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:13:7:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_non_intersecting.R#L13) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (is_one_na(mrca_priors)) return(TRUE)
      ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:16:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_non_intersecting.R#L16) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior_1))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:17:21:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_non_intersecting.R#L17) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior_1))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:20:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_non_intersecting.R#L20) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
      testit::assert(is_mrca_prior(mrca_prior_2))
                     ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:21:23:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_mrca_taxa_non_intersecting.R#L21) *warning:* **no visible global function definition for ‘is_one_na’**
```r
      testit::assert(!is_one_na(mrca_prior_2))
                      ^~~~~~~~~
```
[R/are_site_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_site_models.R#L10) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (is_site_model(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/are_site_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_site_models.R#L12) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    if (!is_site_model(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/are_tree_priors.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/are_tree_priors.R#L14) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    if (!is_tree_prior(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_lh_distr.R#L23) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_lh_distr.R#L25) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_operators.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_operators.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:19:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_operators.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_operators.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_operators.R#L34) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:37:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_operators.R#L37) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_prior_distr.R#L19) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:29:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_prior_distr.R#L29) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:44:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_prior_distr.R#L44) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:48:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_prior_distr.R#L48) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(clock_model$id))
                 ^~~~~
```
[R/clock_model_to_xml_state.R:26:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_state.R#L26) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_tracelog.R#L18) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_tracelog.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_tracelog.R#L33) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_treelogger.R#L9) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:24:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_model_to_xml_treelogger.R#L24) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_operators.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_models_to_xml_operators.R#L9) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_models_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_models_to_xml_state.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_models_to_xml_tracelog.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/clock_models_to_xml_tracelog.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/create_beast2_input_1_12.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_1_12.R#L39) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
    testit::assert(are_initial_phylogenies(initial_phylogenies))
                   ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_beast.R#L28) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_beast.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:30:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_beast.R#L30) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:22:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L22) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L23) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:24:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L24) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:175:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L175) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:179:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L179) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:228:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L228) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:230:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L230) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:289:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L289) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:291:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L291) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:325:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L325) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:327:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L327) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:376:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L376) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:378:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L378) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:439:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L439) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:441:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_distr.R#L441) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L18) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L19) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L20) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:21:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L21) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:172:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_loggers.R#L172) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_operators.R#L13) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_operators.R#L14) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_operators.R#L15) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_operators.R#L16) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_run.R#L25) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:26:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_run.R#L26) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:27:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_run.R#L27) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_state.R#L15) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input_state.R#L16) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_beast2_input.R:140:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_beast2_input.R#L140) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:54:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L54) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(distr))
                 ^~~~~~~~~~~~~
```
[R/distr_to_xml.R:56:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L56) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:84:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L84) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(distr))
                 ^~~~~~~~~~~~
```
[R/distr_to_xml.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L86) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:109:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L109) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(distr))
                 ^~~~~~~~~~~~~~
```
[R/distr_to_xml.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L111) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:140:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L140) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:142:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L142) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:171:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L171) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:173:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L173) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:201:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L201) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(distr))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:203:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L203) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:233:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L233) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(distr))
                 ^~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L235) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:264:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L264) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:266:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L266) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:282:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L282) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:284:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L284) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:308:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L308) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:310:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/distr_to_xml.R#L310) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/gamma_site_model_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/gamma_site_model_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/gamma_site_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/gamma_site_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_state.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/gamma_site_model_to_xml_state.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_model_name.R:17:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_clock_model_name.R#L17) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_params.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_tree_priors_n_params.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    n <- n + get_tree_prior_n_params(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_unlinked_tree_priors.R#L6) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/get_unlinked_tree_priors.R#L17) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/init_clock_models.R:45:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
      testit::assert(is_strict_clock_model(clock_model))
                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:78:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L78) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:85:26:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L85) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:92:26:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L92) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_mrca_priors.R#L14) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L14) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:18:20:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L18) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/init_tree_priors.R:41:22:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L41) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
      testit::assert(is_yule_tree_prior(tree_prior))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:48:28:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L48) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    distr_id <- distr_id + get_tree_prior_n_distrs(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:49:28:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L49) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    param_id <- param_id + get_tree_prior_n_params(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/is_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  if (is_rln_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:12:7:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/is_clock_model.R#L12) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  if (is_strict_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/6ab965e292927d1f0a875c82d281ff1dc348e6f9/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```


Hi Sir,
Thank you for the post. After changing my code as above, I can create volumes however still cannot render the volume on hololens as expected. After I baked the volume as a volume.asset and ran the app, I could not see a medical volume rendered but a white plane/box thingy instead, as shown in the picture. Do you know how my problem could be solved? Many many thanks.

![image](https://user-images.githubusercontent.com/42296651/47719736-23e6b380-dca0-11e8-861a-087c60de1441.png)


Comment on 844e813c9b3c44865b853ffcaf9666e4a132642e.

There are 55 results for the section all.cpp. They have been shortened and will not be shown inline because they are more than 10.

| Message | File | Line |
|---|---|---|
| Line contains following spacing inconsistencies: - Trailing whitespaces. | merge_sort/Cpp/merge_sort.cpp | 6 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | merge_sort/Cpp/merge_sort.cpp | 10 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 12 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 13 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 14 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 15 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 16 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 17 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 18 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 19 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 20 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 21 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 22 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | merge_sort/Cpp/merge_sort.cpp | 24 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 26 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 27 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 28 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 29 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 30 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 31 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 32 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 33 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | merge_sort/Cpp/merge_sort.cpp | 34 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 35 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 36 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 37 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 38 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 39 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 40 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 41 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 42 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 43 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 44 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 45 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 46 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 47 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 48 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 49 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 50 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 51 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 52 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | merge_sort/Cpp/merge_sort.cpp | 54 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 57 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 58 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 59 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 60 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 61 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 62 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | merge_sort/Cpp/merge_sort.cpp | 64 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 68 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 69 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 70 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 71 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 72 |
| Line contains following spacing inconsistencies: - Spaces used instead of tabs. | merge_sort/Cpp/merge_sort.cpp | 73 |

Until GitMate provides an online UI to show a better overview, you can run [coala](https://coala.io/) locally for more details.


Comment on 844e813c9b3c44865b853ffcaf9666e4a132642e.

There are 48 results for the section all.cpplint. They have been shortened and will not be shown inline because they are more than 10.

| Message | File | Line |
|---|---|---|
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 5 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | merge_sort/Cpp/merge_sort.cpp | 6 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | merge_sort/Cpp/merge_sort.cpp | 6 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 7 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 8 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 9 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | merge_sort/Cpp/merge_sort.cpp | 10 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | merge_sort/Cpp/merge_sort.cpp | 10 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 11 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 12 |
| Missing space before ( in for(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 15 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 15 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | merge_sort/Cpp/merge_sort.cpp | 24 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | merge_sort/Cpp/merge_sort.cpp | 24 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 25 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 25 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 27 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 28 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 29 |
| Missing space before ( in for(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 30 |
| Missing space before ( in for(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 32 |
| Missing spaces around =  [whitespace/operators] [4] | merge_sort/Cpp/merge_sort.cpp | 33 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | merge_sort/Cpp/merge_sort.cpp | 34 |
| Missing space before ( in while(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 36 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 36 |
| Missing space before ( in if(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 37 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 37 |
| An else should appear on the same line as the preceding }  [whitespace/newline] [4] | merge_sort/Cpp/merge_sort.cpp | 41 |
| If an else has a brace on one side, it should have it on both  [readability/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 41 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 41 |
| Missing space before ( in while(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 47 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 47 |
| Missing space before ( in while(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 50 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 50 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | merge_sort/Cpp/merge_sort.cpp | 54 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | merge_sort/Cpp/merge_sort.cpp | 54 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 55 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 55 |
| Missing space before ( in if(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 57 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 57 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 58 |
| Weird number of spaces at line-start.  Are you using a 2-space indent?  [whitespace/indent] [3] | merge_sort/Cpp/merge_sort.cpp | 64 |
| Line ends in whitespace.  Consider deleting these extra spaces.  [whitespace/end_of_line] [4] | merge_sort/Cpp/merge_sort.cpp | 64 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 65 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 65 |
| Use int16/int64/etc, rather than the C type long  [runtime/int] [4] | merge_sort/Cpp/merge_sort.cpp | 68 |
| Missing space before ( in while(  [whitespace/parens] [5] | merge_sort/Cpp/merge_sort.cpp | 69 |
| Missing space before {  [whitespace/braces] [5] | merge_sort/Cpp/merge_sort.cpp | 69 |

Until GitMate provides an online UI to show a better overview, you can run [coala](https://coala.io/) locally for more details.


thx, very kind...

btw: there could be a number of (strange) issues related to this, like #1976 or #1952. basically everything tha'ts related to wifi-comms.

so let's hope that this is really the underlying problem, and there's a final fix for it....


That wasn't intentional.. some `c-a` in Vim I assume?!


Just a small note: In the Type Foundries section, you've written “Schik Toikka” rather than “Schick Toikka”


I opened issue #122 about this.


newline :-)


newline here :-)


Welcome to Data loss™


<!DOCTYPE html>

<meta charset="UTF-8">
<title>TipsNote : GitHub Pages Sample</title>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/marx/2.0.4/marx.css">

GitHub Pages のサンプルです

  <button>TipsNote に戻る</button>


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-131422 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-131422") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


test


If the current value is equal to the previous one, it's still sorted.


Why this landed here instead on a branch ? I thought we are adding Maven support for 1.17.0 not 1.16.0.


IBM Cloud [toolchain](https://dev-console.stage1.ng.bluemix.net/devops/toolchains/cbb1ba80-6aa5-4f56-ae8a-076dcb432eed?env_id=ibm%3Ays1%3Aus-south "LinsWeatherApp-SVT"): [Delivery Pipeline](https://dev-console.stage1.ng.bluemix.net/devops/pipelines/d2f455e4-a083-4a20-862b-37c8bca8a839?env_id=ibm%3Ays1%3Aus-south "LinsWeatherApp-SVT") deployed [LinsWeatherApp-SVT](https://github.com/lrdavis2/LinsWeatherApp-SVT/releases/tag/deploy-ibm-ys1-us-south-lrdavis-us.ibm.com-dev-20181030-131703 "deploy-ibm-ys1-us-south-lrdavis-us.ibm.com-dev-20181030-131703") to [dev](https://console.stage1.bluemix.net/apps/50abe253-9504-48e4-8d11-7a9c7677241b?env_id=ibm:ys1:us-south "ibm:ys1:us-south:lrdavis@us.ibm.com:dev"), including this commit


#15  #7


Thanks, there was an issue/ticket from me about it on the Redmine some months/years ago.


Successfully aliased the URL <https://packagephobia-yftjzfwapv.now.sh> to the following alias.

* https://packagephobia.now.sh


no, its a switch() in client


比较两个文件重复的行


[Code coverage](https://56-57030033-gh.circle-artifacts.com/0/root/project/coverage/lcov-report/index.html) is currently at **100%**


Perhaps breaks can be added after ACC_BLEND_FREE and default ?


Hey @freekmurze , was this purposely marked as v6.9.1? Because whole this branch of code origins in v7. Previous v6.9.0 is something completely different.