[R/are_clock_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_clock_models.R#L10) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  if (is_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_clock_models.R#L12) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    if (!is_clock_model(i)) return(FALSE)
         ^~~~~~~~~~~~~~
```
[R/are_clock_models.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_clock_models.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/are_clock_models.R:32:16:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_clock_models.R#L32) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    rlns[i] <- is_rln_clock_model(clock_models[[i]])
               ^~~~~~~~~~~~~~~~~~
```
[R/are_ids.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_ids.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  if (is_id(x)) return(TRUE)
      ^~~~~
```
[R/are_ids.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_ids.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
    if (!is_id(i)) return(FALSE)
         ^~~~~
```
[R/are_init_clock_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_init_clock_models.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  if (!are_clock_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~
```
[R/are_init_mrca_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_init_mrca_priors.R#L10) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  if (!are_mrca_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_site_models.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_init_site_models.R#L10) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  if (!are_site_models(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_init_tree_priors.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_init_tree_priors.R#L10) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  if (!are_tree_priors(x)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/are_initial_phylogenies.R:10:23:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_initial_phylogenies.R#L10) *warning:* **no visible global function definition for ‘is_phylo’**
```r
    if (!is.na(x) && !is_phylo(x)) return(FALSE)
                      ^~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_alignment_ids_in_fastas.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:15:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_alignment_ids_in_fastas.R#L15) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_alignment_ids_in_fastas.R:16:21:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_alignment_ids_in_fastas.R#L16) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_names_in_fastas.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_names_in_fastas.R#L11) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_non_intersecting.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:13:7:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_non_intersecting.R#L13) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (is_one_na(mrca_priors)) return(TRUE)
      ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:16:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_non_intersecting.R#L16) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior_1))
                   ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:17:21:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_non_intersecting.R#L17) *warning:* **no visible global function definition for ‘is_one_na’**
```r
    testit::assert(!is_one_na(mrca_prior_1))
                    ^~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:20:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_non_intersecting.R#L20) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
      testit::assert(is_mrca_prior(mrca_prior_2))
                     ^~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:21:23:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_mrca_taxa_non_intersecting.R#L21) *warning:* **no visible global function definition for ‘is_one_na’**
```r
      testit::assert(!is_one_na(mrca_prior_2))
                      ^~~~~~~~~
```
[R/are_site_models.R:10:7:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_site_models.R#L10) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (is_site_model(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/are_site_models.R:12:10:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_site_models.R#L12) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    if (!is_site_model(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/are_tree_priors.R:14:10:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/are_tree_priors.R#L14) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    if (!is_tree_prior(i)) return(FALSE)
         ^~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_lh_distr.R#L23) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_lh_distr.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_lh_distr.R#L25) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_operators.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_operators.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:19:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_operators.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_operators.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_operators.R#L34) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:37:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_operators.R#L37) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_prior_distr.R#L19) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:29:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_prior_distr.R#L29) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:44:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_prior_distr.R#L44) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:48:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_prior_distr.R#L48) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(clock_model$id))
                 ^~~~~
```
[R/clock_model_to_xml_state.R:26:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_state.R#L26) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_tracelog.R#L18) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_tracelog.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_tracelog.R#L33) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_treelogger.R#L9) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:24:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_model_to_xml_treelogger.R#L24) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_operators.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_models_to_xml_operators.R#L9) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_models_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_models_to_xml_state.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_models_to_xml_tracelog.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/clock_models_to_xml_tracelog.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/create_beast2_input_1_12.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_1_12.R#L39) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
    testit::assert(are_initial_phylogenies(initial_phylogenies))
                   ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_beast.R#L28) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_beast.R#L29) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:30:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_beast.R#L30) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:22:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L22) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:23:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L23) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:24:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L24) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:175:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L175) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:179:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L179) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:228:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L228) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:230:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L230) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:289:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L289) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:291:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L291) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:325:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L325) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:327:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L327) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:376:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L376) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:378:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L378) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:439:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L439) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:441:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_distr.R#L441) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L18) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L19) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L20) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:21:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L21) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:172:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_loggers.R#L172) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_operators.R#L13) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_operators.R#L14) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_operators.R#L15) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_operators.R#L16) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:25:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_run.R#L25) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:26:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_run.R#L26) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:27:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_run.R#L27) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_state.R#L15) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input_state.R#L16) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_beast2_input.R:140:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_beast2_input.R#L140) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:54:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L54) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(distr))
                 ^~~~~~~~~~~~~
```
[R/distr_to_xml.R:56:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L56) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:84:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L84) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(distr))
                 ^~~~~~~~~~~~
```
[R/distr_to_xml.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L86) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:109:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L109) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(distr))
                 ^~~~~~~~~~~~~~
```
[R/distr_to_xml.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L111) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:140:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L140) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:142:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L142) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:171:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L171) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:173:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L173) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:201:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L201) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(distr))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:203:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L203) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:233:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L233) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(distr))
                 ^~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L235) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:264:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L264) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:266:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L266) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:282:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L282) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:284:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L284) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:308:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L308) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:310:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/distr_to_xml.R#L310) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/gamma_site_model_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/gamma_site_model_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/gamma_site_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/gamma_site_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_state.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/gamma_site_model_to_xml_state.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_model_name.R:17:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_clock_model_name.R#L17) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_params.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_tree_priors_n_params.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    n <- n + get_tree_prior_n_params(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_unlinked_tree_priors.R#L6) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_tree_priors.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/get_unlinked_tree_priors.R#L17) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/init_clock_models.R:45:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
      testit::assert(is_strict_clock_model(clock_model))
                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:78:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L78) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:85:26:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L85) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:92:26:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L92) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_mrca_priors.R#L14) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L14) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:18:20:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L18) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/init_tree_priors.R:41:22:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L41) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
      testit::assert(is_yule_tree_prior(tree_prior))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:48:28:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L48) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    distr_id <- distr_id + get_tree_prior_n_distrs(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:49:28:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L49) *warning:* **no visible global function definition for ‘get_tree_prior_n_params’**
```r
    param_id <- param_id + get_tree_prior_n_params(tree_prior)
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/is_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  if (is_rln_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:12:7:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/is_clock_model.R#L12) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  if (is_strict_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/dffb191458dec526bddd963bb52519fbb634b389/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```


пофиксь


Кирилл, спасибо, очень интересная вещь, так сделаю. Но я старался не повторить метод, а переопределить его,
как мне уже Максим писал: "...правильно будет прописать проверку в подклассах поезда в рамках метода carr_attach, который в них нужно будет переопределить (тема урока "... наследование и полиморфизм" :) )"
Я как-то криво делаю? Я уже убирал в родительский класс.


i guess ~ works only outside the quotes.


Commit do readme inicial


bro u r social id?


Sure. Do you want me to raise PR for this test case?


Ganesha allocates memory and fills it in, the only checks it does, it does a LogFatal for.

We could add a return code just in case a future user does something more complex justifying a failure that isn't ENOMEM (which of course crashes). Does ntirpc now assume memory allocation terminates?


@nitin456 That will be great. Thanks a lot.


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-141045 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-141045") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


Oh. I'm really sorry.

Maybe a simple adjust can help too.
mob -= popcount(b & pos,pieces(Us));


Hallo @elbsurfer
wir sammeln immer mehrere Bugfixes, Features etc, bevor wir eine neue Version im Store veröffentlichen. Hintergrund ist, dass wir einen mehrstufigen Testprozess haben. Zuerst wird jeder Pull Request für sich getestet, bevor er gemerged wird. Steht ein Release an, testen wir noch einmal "über den Tellerrand hinaus" alle Zahlarten und Module, um sicherzustellen, dass das Zusammenspiel auch funktioniert. Ziel ist, dass die Releases im Store so stabil wie möglich laufen.

Dieser Fix wird also im nächsten Release vorhanden sein. Wenn der Schuh drückt, könnt ihr aber natürlich den aktuellen Master auschecken, auf einer Testinstanz gegentesten und dann deployen.


To be consistent, let's use the Ruby way of doing this not logic.

`unless collected_fields.nil?` instead of `if !collected_fields.nil?`


<3 :-)


Thank you


@stevehu, please review this PR and merge.
https://github.com/networknt/json-schema-validator/pull/104


Successfully aliased the URL <https://arunodame-pekyxrvsnh.now.sh> to the following alias.

* https://arunoda.me


invalid filter? Round brackets and one hash, `tvn.pl##div[id*=_videoDriverContent] but after two years it can not block anything.


I reduced name of variables as they're too long and makes the code harder too read. Usually, if you use a collection/array make it plural, in a loop, make it singular


change


--video-width would make more sense


Invalid filter? Round brackets and one hash, this is how it should look like `tvn.pl##div[id*=_videoDriverContent]` but after two years it can not block anything.


missing space


Find MaxNode between two Node in BST A and B.


@stevehu I tried some changes in AnyOfValidator in my local setup. The validation time was reduced to 150us (from 250us). I will wait for your suggestion before making commit.
Thanks for your help.


![](https://github.trello.services/images/mini-trello-icon.png) [30 Oct 2018 - v1.0.6](https://trello.com/c/xfp0hR2k/8-30-oct-2018-v106)


ok looks good...


Sure


@chelmuth: please consider to add above follow-up commit to staging


Line 390 is not needed.
because if mob == 0, b will be empty, and it will not go in the loop.

Also I corrected my suggestion. I was wrong about the mobilityArea,
it was already excluded by some new code on line 322.


So right now when the logs coming to the fluentD plugin are in JSON format, we allow customers to specify the metadata in a key called `_sumo_metadata`.  This can be used to set _sourceCategory, _sourceName, and _sourceHost. See the method `sumo_key` and https://github.com/adipatel/fluentd-output-sumologic#dynamic-configuration-within-log-message. I am wondering if we should also do this here to keep consistent behavior.


maybe it's better to just give the other commiter a hint instead of "just change it" after the original commit ;)


@ale-rt Jenkins CI reporting about code analysis
See the full report here: https://jenkins.plone.org/job/package-plone.app.z3cform/133/violations
```
plone/app/z3cform/converters.py:106:11: T000 Todo note found.
plone/app/z3cform/inline_validation.py:15:5: C901 'InlineValidationView.__call__' is too complex (15)
plone/app/z3cform/widget.py:5:1: I001 isort found an import in the wrong position
plone/app/z3cform/widget.py:667:19: T000 Todo note found.
plone/app/z3cform/widget.py:681:47: T000 Todo note found.
plone/app/z3cform/tests/test_widgets.py:6:1: I001 isort found an import in the wrong position
plone/app/z3cform/tests/test_widgets.py:159:50: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:169:60: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:170:18: C812 missing trailing comma
```
Follow [these instructions](https://github.com/plone/jenkins.plone.org/blob/master/docs/source/run-qa-on-package.rst) to reproduce it locally.


@ale-rt Jenkins CI reporting about code analysis
See the full report here: https://jenkins.plone.org/job/package-plone.app.z3cform/134/violations
```
plone/app/z3cform/converters.py:100:11: T000 Todo note found.
plone/app/z3cform/inline_validation.py:15:5: C901 'InlineValidationView.__call__' is too complex (15)
plone/app/z3cform/interfaces.py:4:1: I001 isort found an import in the wrong position
plone/app/z3cform/object.py:7:49: C812 missing trailing comma
plone/app/z3cform/templates.py:18:17: C812 missing trailing comma
plone/app/z3cform/templates.py:24:1: E305 expected 2 blank lines after class or function definition, found 1
plone/app/z3cform/widget.py:8:1: I001 isort found an import in the wrong position
plone/app/z3cform/widget.py:18:1: I001 isort found an import in the wrong position
plone/app/z3cform/widget.py:98:25: C812 missing trailing comma
plone/app/z3cform/widget.py:104:49: C812 missing trailing comma
plone/app/z3cform/widget.py:163:20: C812 missing trailing comma
plone/app/z3cform/widget.py:378:26: C812 missing trailing comma
plone/app/z3cform/widget.py:481:36: C812 missing trailing comma
plone/app/z3cform/widget.py:492:26: C812 missing trailing comma
plone/app/z3cform/widget.py:591:29: C812 missing trailing comma
plone/app/z3cform/widget.py:593:36: C812 missing trailing comma
plone/app/z3cform/widget.py:624:47: C812 missing trailing comma
plone/app/z3cform/widget.py:628:19: T000 Todo note found.
plone/app/z3cform/widget.py:642:47: T000 Todo note found.
plone/app/z3cform/widget.py:646:66: C812 missing trailing comma
plone/app/z3cform/widget.py:647:30: C812 missing trailing comma
plone/app/z3cform/widget.py:648:26: C812 missing trailing comma
plone/app/z3cform/widget.py:649:22: C812 missing trailing comma
plone/app/z3cform/widget.py:664:46: C812 missing trailing comma
plone/app/z3cform/tests/example.py:26:5: D001 found implements( replace it with zope.interface.implementer
plone/app/z3cform/tests/example.py:31:13: Q000 Remove bad quotes.
plone/app/z3cform/tests/example.py:44:34: Q000 Remove bad quotes.
plone/app/z3cform/tests/example.py:55:13: Q000 Remove bad quotes.
plone/app/z3cform/tests/example.py:70:30: Q000 Remove bad quotes.
plone/app/z3cform/tests/example.py:71:55: Q000 Remove bad quotes.
plone/app/z3cform/tests/example.py:72:52: Q000 Remove bad quotes.
plone/app/z3cform/tests/example.py:77:13: Q000 Remove bad quotes.
plone/app/z3cform/tests/layer.py:34:41: C812 missing trailing comma
plone/app/z3cform/tests/test_objectsubform.py:21:15: Q000 Remove bad quotes.
plone/app/z3cform/tests/test_objectsubform.py:21:33: C812 missing trailing comma
plone/app/z3cform/tests/test_objectsubform.py:26:15: D001 found implements( replace it with zope.interface.implementer
plone/app/z3cform/tests/test_objectsubform.py:46:15: Q000 Remove bad quotes.
plone/app/z3cform/tests/test_objectsubform.py:49:19: Q000 Remove bad quotes.
plone/app/z3cform/tests/test_objectsubform.py:50:30: C812 missing trailing comma
plone/app/z3cform/tests/test_objectsubform.py:51:10: C812 missing trailing comma
plone/app/z3cform/tests/test_objectsubform.py:57:13: Q000 Remove bad quotes.
plone/app/z3cform/tests/test_objectsubform.py:62:15: D001 found implements( replace it with zope.interface.implementer
plone/app/z3cform/tests/test_objectsubform.py:110:24: C812 missing trailing comma
plone/app/z3cform/tests/test_objectsubform.py:117:11: T000 Todo note found.
plone/app/z3cform/tests/test_objectsubform.py:133:19: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:14:33: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:21:9: E731 do not assign a lambda expression, use a def
plone/app/z3cform/tests/test_utils.py:25:33: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:36:33: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:47:33: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:66:18: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:67:14: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:82:18: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:83:14: C812 missing trailing comma
plone/app/z3cform/tests/test_utils.py:88:33: C812 missing trailing comma
plone/app/z3cform/tests/test_widget.py:12:15: D001 found implements( replace it with zope.interface.implementer
plone/app/z3cform/tests/test_widgets.py:40:5: D001 found implements( replace it with zope.interface.implementer
plone/app/z3cform/tests/test_widgets.py:80:38: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:131:14: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:182:56: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:184:34: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:185:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:245:37: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:276:56: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:282:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:283:22: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:284:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:425:43: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:439:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:440:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:457:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:458:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:475:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:476:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:495:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:496:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:514:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:515:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:527:62: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:541:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:542:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:553:62: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:567:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:568:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:580:62: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:594:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:595:18: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:605:43: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:648:52: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:653:36: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:726:32: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:738:37: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:740:14: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:753:37: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:755:14: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:852:75: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:998:32: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1013:24: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1045:50: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1049:60: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1053:55: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1057:59: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1075:46: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1078:19: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1086:24: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1110:74: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1116:50: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1120:60: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1124:55: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1128:59: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1146:46: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1149:19: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1180:51: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1208:30: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1233:39: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1268:36: C812 missing trailing comma
plone/app/z3cform/tests/test_widgets.py:1315:40: Q000 Remove bad quotes.
plone/app/z3cform/tests/test_widgets.py:1334:25: C812 missing trailing comma
plone/app/z3cform/tests/tests.py:47:10: C812 missing trailing comma
plone/app/z3cform/wysiwyg/widget.py:50:27: C812 missing trailing comma
```
Follow [these instructions](https://github.com/plone/jenkins.plone.org/blob/master/docs/source/run-qa-on-package.rst) to reproduce it locally.


Что это за метод?


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-141941 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181030-141941") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


Should we also add a test for the `add_timestamp` is `false` case?


@sburina Do you know if this issue has been fixed? We just encountered the same problem when we ran a `composer update` and lost about 10 hours collectively trying to figure out why :(.


We ended up just drowngrading laravel back to 5.5.30. Not ideal... but at least we can get moving again


kk


[R/get_default_beast2_download_url.R:9:3:](https://github.com/richelbilderbeek/beastier/blob/1366d1a879bbacb611b79e156710516592a05087/R/get_default_beast2_download_url.R#L9) *warning:* **no visible global function definition for ‘check_os’**
```r
  check_os(os)
  ^~~~~~~~
```


Absolutely agree, and I'm really sorry for that, but after few attemps in other commits. I realized a lot of comments have being ignored... Which does not leave a lot of choices...


Comment on 8957b7850cc1c1c1d4d6ac149783dc4f09399823.

There are 12 results for the section all.cpplint. They have been shortened and will not be shown inline because they are more than 10.

| Message | File | Line |
|---|---|---|
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | selection_sort/cpp/selection_sort.cpp | 6 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | selection_sort/cpp/selection_sort.cpp | 8 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | selection_sort/cpp/selection_sort.cpp | 11 |
| Extra space before ( in function call  [whitespace/parens] [4] | selection_sort/cpp/selection_sort.cpp | 21 |
| { should almost always be at the end of the previous line  [whitespace/braces] [4] | selection_sort/cpp/selection_sort.cpp | 22 |
| Missing space after ,  [whitespace/comma] [3] | selection_sort/cpp/selection_sort.cpp | 23 |
| Missing space after ,  [whitespace/comma] [3] | selection_sort/cpp/selection_sort.cpp | 30 |
| Lines should be <= 80 characters long  [whitespace/line_length] [2] | euclidean_gcd/cpp/euclidian.cpp | 16 |
| Lines should be <= 80 characters long  [whitespace/line_length] [2] | euclidean_gcd/cpp/euclidian.cpp | 28 |
| Missing space after ,  [whitespace/comma] [3] | euclidean_gcd/cpp/euclidian.cpp | 28 |
| Lines should be <= 80 characters long  [whitespace/line_length] [2] | euclidean_gcd/cpp/euclidian.cpp | 29 |
| Missing space after ,  [whitespace/comma] [3] | euclidean_gcd/cpp/euclidian.cpp | 29 |

Until GitMate provides an online UI to show a better overview, you can run [coala](https://coala.io/) locally for more details.


done hw_ @elpiankova plz check


The aforementioned Rockchip version has a fair amount of code in it as compared to the simpler (current) mainline "dwc3-of-simple" version...  This situation perhaps seems somewhat analogous to the simpler mainline FUSB302 driver versus the "more complete" 4.4-based Rockchip-specific version that I ported over in this particular change - the Rockchip version supports more than the current mainline.

Unfortunately I don't have a DWC3-based hub or device that I could try any changes with, so I'm not sure how much further I can help you with this at this point in time :-/


Это зачем?


Successfully aliased the URL <https://arunodame-weoyyxkvps.now.sh> to the following alias.

* https://arunoda.me


 if ((kf < FILE_E) == (file_of(s) < kf))

{
Bitboard support = pos.pieces(Us, PAWN, KNIGHT) | pos.pieces(Us, BISHOP);
b &= ~pos.pieces(Us); //mobilityArea was already excluded at line 322
while (b)
{
    Square s2 = pop_lsb(&b);
    if (pos.attackers_to(s2) & support)
       mob ++;
}

if (mob <=3)
    score -= (TrappedRook - make_score(mob * 22, 0)) * (1 + !pos.can_castle(Us));
}

If we go beyond the table [mob] after mob ++, will it not be a bug or a new value will not be able to exceed the maximum !?


Why did you revert? Could've just amended the previous commit? (Considering your next commit is also updating the README file)


Created multidev environment [rescue-x#oct-18](https://dashboard.pantheon.io/sites/c8430b75-4272-4aca-bfcd-206b12279315#oct-18).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://oct-18-rescue-x.pantheonsite.io/)


Maybe override the `onXX` methods, like `onAddElement`?


That's funny. How did that happen? ^^ Nice catch!


@hreinberger

Wenn ihr solch einen Testprozess habt, wie kann es denn dann sein, dass im 3.11.0 Release steht "added compatibility for Shopware 5.5" und solch eine elementare Funktion wie, dass der Kunde seine Adresse ändert, nicht mehr möglich ist, weil das Billing/Shipping Model am Customer seit 5.4 nicht mehr in Shopware enthalten ist und dieses im Plugin noch verwendet wird.


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

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@arfon : This set of changes successfully created a headerlet interactively for me, and should now work here.


@KasperBaun Blander du Maple/CAS sammen med kode? det kolon er er faret vild :)


Images used in the project


Really Good!


This breaks SickChill, because it removes all of the `import` after `requests.compat`.
https://github.com/SickChill/SickChill/issues/5141


don't know how to overload this method so that it sends double value


Enten skal this.value rettes til price (kig på din private int price) eller også skal "private int price" rettes til "private int value".


Fixes #3628. Darn dyslexia!


[R/get_default_beast2_download_url.R:9:3:](https://github.com/richelbilderbeek/beastier/blob/78c815c901659741d1678f03f7d23633ec960b62/R/get_default_beast2_download_url.R#L9) *warning:* **no visible global function definition for ‘check_os’**
```r
  check_os(os)
  ^~~~~~~~
```


`onAddElement` states:

```
     * This method is called before an element is added. The implementing class
     * can override this method to perform initialization logic or check the
     * validity of the element.
```

So, IMHO what I do here is a specialization of the `added` method and not something that should be done in front of the `added` method. I would like to add logic to the `added` method, so I assume overwriting it and calling super is the common approach for such tasks.


Integrated with https://github.com/danmar/cppcheck/commit/ba28cbe0ffe757fe5e7b834802a7128bdff7e04b


Aliasing was ignored due to a new commit existing for this branch, which will be aliased instead.


Что такое disposables.disposed()?


- [x] Proper Comments as   per Coding Standard guide

 -[ ] Was the bypass   logic implemented for the Triggers, Validation rules and Workflows developed?


No, this is not the binding itself. It is how I use it.
The binding is just
```
function M.InputText(label,buf,buf_size,flags,callback,user_data)
    callback = callback or nil
    user_data = user_data or nil
    flags = flags or 0
    return lib.igInputText(label,buf,buf_size,flags,callback,user_data)
end
```
And I used as shown in previous message dealing myself with chartostring and stringtochar


Created multidev environment [cris#ci-9](https://dashboard.pantheon.io/sites/47f9bb31-f356-464f-aa57-03ca806906e2#ci-9).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-9-cris.pantheonsite.io/)


Do czego ten import?


Yes, it seems I forgot that in this edition

else if (mob <= 3)

In theory it is more correct to try this for the general case.


This line change introduces regression. Master will be updated soon.


it was supposed to be pushed into dev branch until we finish all platform support


Successfully aliased the URL <https://distributedsequencer-qvugyeulny.now.sh> to the following alias.

* https://distseq.now.sh


I didn't update to 4.0.1 because it only listens on exact addresses and that so it wasn't working with `scuttlebot/bin.js` so I havn't actually released a new version yet. there are are bunch of PRs floating around multiserver, ssb-config and secret-stack that address this


You missed `sickbeard/webserve.py:49` ;-)


Deleting `$WP_TESTS_DIR/includes` seems unnecessary if right before that you're deleting `$WP_TESTS_DIR` (?)


Program that creates new number in single numbers.*


You probably meant to put `$CONFIG` here too (?)


seconded.


Additional the `isChannelLinked` calls this method `getLinks` only to test if it's empty:
> !itemChannelLinkRegistry.getLinks(channelUID).isEmpty();

So maybe add an `isLinked(UID uid)` here too.


Actually.. why disable debug mode?


Created multidev environment [rbspace-backend#ci-37](https://dashboard.pantheon.io/sites/599d51e8-07e0-4a90-b7ed-f88f1f66b635#ci-37).

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Curious about this.. does the default cause issues?


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# 修复windows下颜色无法显示
# 增加断线重连的休眠
# 下播只更换当前分区的监听房间


`pVehicleCollisionHandler` is only used in this compilation unit, why would it cause a compilation error? I ran a full recompile with the parent commit and it works fine.


Can you add a unit test? It's easier to review via PRs.


It still fails. You should also get the formatting script working fully.


This breaks standard installations where the admin is under /admin/. Also note the Explorer was relabelled 'Pages' a few versions ago, so this hook should be unnecessary.


If you want something general, (and more efficient) start with a new master

Score RookCoordination = S(5, 0); //whatever you like

And insert something like this near line 568

    b = attackedBy2[Us] & attackedBy[Us][ROOK] & mobilityArea[Us] & ~pos.pieces();
    score += RookCoordination * popcount(b);

or you can try other conditions too.


I think this patch will break the build because `br_netfilter_sysctl_ops` isn't defined until the next patch.


Suggest memset or gid_t list [max] = { 0 }, assuming gid_t is guaranteed not be a union.


Good, I was about to ask you to fix this :)


this final for step 3 ... basis of step 4


Hello Andrew,

It's possible to reply the same behavior to hidden questions? I see that the problem persists in this scenario:

https://plnkr.co/edit/11zWJfnCkayegHnW9EIJ?p=preview


My mistake


Refactor the steps in the online registry method


This is basic c program.


I may misunderstand how to make this work.

I looked to see if the hotend controls disabled, and on my test they did
not (connected and started a print). So this seemed like the change that
was required and also seemed to get the right results.

As always, happy to have it changed to a better pattern or include the
consideration that I took out.

Thanks for always looking at these things.

On Tue, Oct 30, 2018, 6:45 AM John Lewin <notifications@github.com> wrote:

> What's the motivation for the change? The isEnabled guard has been working
> as designed since it was originally written and prevents unnecessary
> processing of child control when no change has occurred. The field is
> nullable and is initialized to null so it gets the right behavior from the
> start. Did the conditions change such that it's no longer valid in a way
> that I missed?
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/larsbrubaker/MatterControl/commit/c5eea4a3ef826534db25903b64fac4c94841da81#commitcomment-31102387>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ABGsvPmJJzkC1JydAA31CUpaxxpbn7TZks5uqFf3gaJpZM4YB97C>
> .
>


> I reduced name of variables as they're too long and makes the code harder too read...
OK, could you please review all java and js files? I'm sure you can make many function/variable names more readable. Maybe, you can start from DataTable.java.

I agree with @tandraschko ;) I'm working on PRO problems related to the issue and my next commits are constantly breaking.


data structure in cpp