[R/aggregate-methods.R:122:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L122) *style:* **Variable or function name should be snake_case.**
```r
.aggregateFuns <- c("sum", "mean")
^~~~~~~~~~~~~~
```
[R/aggregate-methods.R:127:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L127) *style:* **Variable or function name should be snake_case.**
```r
.aggregateMessage <- function(groupings, fun) {
^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:128:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L128) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
    assert_is_factor(groupings)
    ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:129:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L129) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(fun)
    ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:153:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L153) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:154:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L154) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:155:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L155) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(object), names(groupings))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L156) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:158:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L158) *warning:* **no visible global function definition for ‘.aggregateMessage’**
```r
        .aggregateMessage(groupings, fun = fun)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:220:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L220) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:221:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L221) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:222:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L222) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(object), names(groupings))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:223:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L223) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:225:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L225) *warning:* **no visible global function definition for ‘.aggregateMessage’**
```r
        .aggregateMessage(groupings, fun = fun)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:281:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L281) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:282:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L282) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(col)
        ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:286:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L286) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(rowData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:286:40:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L286) *warning:* **no visible global function definition for ‘rowData’**
```r
        assert_is_subset(col, colnames(rowData(object)))
                                       ^~~~~~~
```
[R/aggregate-methods.R:287:22:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L287) *warning:* **no visible global function definition for ‘rowData’**
```r
        groupings <- rowData(object)[[col]]
                     ^~~~~~~
```
[R/aggregate-methods.R:288:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L288) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:289:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L289) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:312:36:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L312) *warning:* **no visible global function definition for ‘emptyRanges’**
```r
            args[["rowRanges"]] <- emptyRanges(names = rownames)
                                   ^~~~~~~~~~~
```
[R/aggregate-methods.R:314:34:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L314) *warning:* **no visible global function definition for ‘DataFrame’**
```r
            args[["rowData"]] <- DataFrame(row.names = rownames)
                                 ^~~~~~~~~
```
[R/aggregate-methods.R:316:30:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L316) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
        se <- do.call(what = SummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:337:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L337) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:338:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L338) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(col)
        ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:342:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L342) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(colData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:342:40:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L342) *warning:* **no visible global function definition for ‘colData’**
```r
        assert_is_subset(col, colnames(colData(object)))
                                       ^~~~~~~
```
[R/aggregate-methods.R:343:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L343) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(sampleData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:344:22:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L344) *warning:* **no visible global function definition for ‘colData’**
```r
        groupings <- colData(object)[[col]]
                     ^~~~~~~
```
[R/aggregate-methods.R:345:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L345) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:346:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L346) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:364:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L364) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- sampleData(object)[["aggregate"]]
        ^~~~~~~~~~~
```
[R/aggregate-methods.R:365:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L365) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(sampleNames)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:366:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L366) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- levels(sampleNames)
        ^~~~~~~~~~~
```
[R/aggregate-methods.R:367:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L367) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- DataFrame(
        ^~~~~~~~~~
```
[R/aggregate-methods.R:378:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L378) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- setdiff(interestingGroups(object), "sampleName")
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:379:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L379) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/aggregate-methods.R:389:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L389) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
        assertHasRownames(sampleData)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:397:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L397) *warning:* **no visible global function definition for ‘rowRanges’**
```r
            args[["rowRanges"]] <- rowRanges(object)
                   ^~~~~~~~~
```
[R/aggregate-methods.R:399:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L399) *warning:* **no visible global function definition for ‘rowData’**
```r
            args[["rowData"]] <- rowData(object)
                   ^~~~~~~
```
[R/aggregate-methods.R:401:30:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L401) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
        se <- do.call(what = SummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:402:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L402) *warning:* **no visible global function definition for ‘metadata’**
```r
        metadata(se)[["aggregate"]] <- TRUE
        ^~~~~~~~
```
[R/aggregate-methods.R:402:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L402) *warning:* **no visible global function definition for ‘metadata<-’**
```r
        metadata(se)[["aggregate"]] <- TRUE
        ^~~~~~~~
```
[R/aggregate-methods.R:427:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L427) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(object)
        ^~~~~~~
```
[R/aggregate-methods.R:428:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L428) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(c("sampleID", "aggregate"), colnames(colData))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:429:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L429) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(colData[["aggregate"]])
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:463:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L463) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(names(groupings), colnames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:464:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L464) *warning:* **no visible global function definition for ‘colData<-’, Did you mean 'colData'?**
```r
        colData(object)[["aggregate"]] <- groupings
        ^~~~~~~
```
[R/aggregate-methods.R:472:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L472) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(rse, "RangedSummarizedExperiment")
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:475:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregate-methods.R#L475) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(rse)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘colData’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘colData<-’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:40:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘cell2sample’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
                                       ^~~~~~~~~~~
```
[R/cell2sample-methods.R:33:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/cell2sample-methods.R#L33) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset("sampleID", colnames(colData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/cell2sample-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/cell2sample-methods.R#L36) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(object)
        ^~~~~~~
```
[R/cell2sample-methods.R:40:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/cell2sample-methods.R#L40) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
            assert_is_factor(sample)
            ^~~~~~~~~~~~~~~~
```
[R/combine-methods.R:80:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L80) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(class(x), class(y))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:91:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L91) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(x), rownames(y))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:94:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L94) *warning:* **no visible global function definition for ‘assert_are_disjoint_sets’**
```r
        assert_are_disjoint_sets(colnames(x), colnames(y))
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:124:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L124) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
            assert_are_identical(rowRanges(x), rowRanges(y))
            ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:125:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L125) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- rowRanges(x)
            ^~~~~~~~~
```
[R/combine-methods.R:126:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L126) *style:* **Variable or function name should be snake_case.**
```r
            rowData <- NULL
            ^~~~~~~
```
[R/combine-methods.R:128:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L128) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
            assert_are_identical(rowData(x), rowData(y))
            ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:129:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L129) *style:* **Variable or function name should be snake_case.**
```r
            rowData <- rowData(x)
            ^~~~~~~
```
[R/combine-methods.R:130:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L130) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- NULL
            ^~~~~~~~~
```
[R/combine-methods.R:134:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L134) *warning:* **no visible global function definition for ‘assert_are_set_equal’**
```r
        assert_are_set_equal(colnames(colData(x)), colnames(colData(y)))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:136:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L136) *style:* **Variable or function name should be snake_case.**
```r
        colData <- rbind(
        ^~~~~~~
```
[R/combine-methods.R:155:30:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/combine-methods.R#L155) *warning:* **no visible binding for global variable ‘makeSummarizedExperiment’**
```r
        se <- do.call(what = makeSummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L59) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
        assert_all_are_non_missing_nor_empty_character(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:60:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L60) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(gene2symbol, "Gene2Symbol")
        ^~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:121:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L121) *style:* **Variable and function names should not be longer than 30 characters.**
```r
convertGenesToSymbols.sparseMatrix <- convertGenesToSymbols.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:121:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L121) *style:* **Variable or function name should be snake_case.**
```r
convertGenesToSymbols.sparseMatrix <- convertGenesToSymbols.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:136:16:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L136) *warning:* **no visible global function definition for ‘Gene2Symbol’**
```r
        g2s <- Gene2Symbol(object)
               ^~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:138:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L138) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(symbols)
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:167:16:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L167) *warning:* **no visible global function definition for ‘Gene2Symbol’**
```r
        g2s <- Gene2Symbol(object)
               ^~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:172:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertGenesToSymbols-methods.R#L172) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(g2s[["geneID"]])
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:22:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L22) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- sampleNames(object)
        ^~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:30:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L30) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
            assert_has_no_duplicates(colnames)
            ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:32:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L32) *warning:* **no visible global function definition for ‘colData’**
```r
            colData(object)[["sampleName"]] <- NULL
            ^~~~~~~
```
[R/convertSampleIDsToNames-methods.R:32:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertSampleIDsToNames-methods.R#L32) *warning:* **no visible global function definition for ‘colData<-’**
```r
            colData(object)[["sampleName"]] <- NULL
            ^~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:65:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L65) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
        assert_all_are_non_missing_nor_empty_character(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:66:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L66) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:67:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L67) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(tx2gene, "Tx2Gene")
        ^~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:102:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L102) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(aggregate)
        ^~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:111:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L111) *warning:* **no visible global function definition for ‘aggregateRows’**
```r
            aggregateRows(object, groupings = t2g)
            ^~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:130:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L130) *style:* **Variable and function names should not be longer than 30 characters.**
```r
convertTranscriptsToGenes.sparseMatrix <- convertTranscriptsToGenes.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:130:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L130) *style:* **Variable or function name should be snake_case.**
```r
convertTranscriptsToGenes.sparseMatrix <- convertTranscriptsToGenes.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:147:16:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/convertTranscriptsToGenes-methods.R#L147) *warning:* **no visible global function definition for ‘Tx2Gene’**
```r
        t2g <- Tx2Gene(object)
               ^~~~~~~
```
[R/counts-methods.R:38:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L38) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset("counts", assayNames(object))
        ^~~~~~~~~~~~~~~~
```
[R/counts-methods.R:38:36:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L38) *warning:* **no visible global function definition for ‘assayNames’**
```r
        assert_is_subset("counts", assayNames(object))
                                   ^~~~~~~~~~
```
[R/counts-methods.R:39:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L39) *warning:* **no visible global function definition for ‘assays’**
```r
        assays(object)[["counts"]]
        ^~~~~~
```
[R/counts-methods.R:58:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L58) *warning:* **no visible global function definition for ‘assays’**
```r
        assays(object)[["counts"]] <- value
        ^~~~~~
```
[R/counts-methods.R:58:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/counts-methods.R#L58) *warning:* **no visible global function definition for ‘assays<-’**
```r
        assays(object)[["counts"]] <- value
        ^~~~~~
```
[R/detectLanes.R:13:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L13) *style:* **Variable or function name should be snake_case.**
```r
detectLanes <- function(
^~~~~~~~~~~
```
[R/detectLanes.R:17:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L17) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(object)
    ^~~~~~~~~~~~~~~~~~~
```
[R/detectLanes.R:18:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L18) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(lanePattern)
    ^~~~~~~~~~~~~~~~~~
```
[R/detectLanes.R:18:24:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L18) *warning:* **no visible binding for global variable ‘lanePattern’**
```r
    assert_is_a_string(lanePattern)
                       ^~~~~~~~~~~
```
[R/detectLanes.R:21:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectLanes.R#L21) *warning:* **no visible global function definition for ‘str_match’**
```r
        as.integer(str_match(object, pattern)[, 2L])
                   ^~~~~~~~~
```
[R/detectOrganism.R:51:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L51) *style:* **Variable or function name should be snake_case.**
```r
detectOrganism <- function(object) {
^~~~~~~~~~~~~~
```
[R/detectOrganism.R:52:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L52) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(object)
    ^~~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:60:14:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L60) *warning:* **no visible global function definition for ‘.detectOrganism.string’**
```r
        x <- .detectOrganism.string(object[[i]])
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:74:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L74) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(object)
        ^~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:82:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/detectOrganism.R#L82) *warning:* **no visible global function definition for ‘assert_is_tbl_df’**
```r
        assert_is_tbl_df(data)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:50:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L50) *style:* **Variable or function name should be snake_case.**
```r
        removeNA = TRUE,
        ^~~~~~~~
```
[R/geometricMean-methods.R:51:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L51) *style:* **Variable or function name should be snake_case.**
```r
        zeroPropagate = FALSE
        ^~~~~~~~~~~~~
```
[R/geometricMean-methods.R:53:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L53) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(removeNA)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:54:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L54) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(zeroPropagate)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:113:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/geometricMean-methods.R#L113) *style:* **Variable or function name should be snake_case.**
```r
geometricMean.sparseMatrix <- geometricMean.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:34:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L34) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(base)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L36) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
        assert_all_are_positive(base)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:57:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L57) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(base)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/logRatio-methods.R#L59) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
        assert_all_are_positive(base)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:25:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L25) *style:* **Variable or function name should be snake_case.**
```r
makeSingleCellExperiment <- function(
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:27:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L27) *style:* **Variable or function name should be snake_case.**
```r
    rowRanges,
    ^~~~~~~~~
```
[R/makeSingleCellExperiment.R:28:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L28) *style:* **Variable or function name should be snake_case.**
```r
    colData,
    ^~~~~~~
```
[R/makeSingleCellExperiment.R:30:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L30) *style:* **Variable or function name should be snake_case.**
```r
    transgeneNames = NULL,
    ^~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L31) *style:* **Variable or function name should be snake_case.**
```r
    spikeNames = NULL
    ^~~~~~~~~~
```
[R/makeSingleCellExperiment.R:56:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSingleCellExperiment.R#L56) *warning:* **no visible global function definition for ‘isSpike<-’**
```r
            isSpike(sce, spikeNames[[i]]) <- spikeNames[[i]]
            ^~~~~~~
```
[R/makeSummarizedExperiment.R:104:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L104) *style:* **Variable or function name should be snake_case.**
```r
makeSummarizedExperiment <- function(
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:106:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L106) *style:* **Variable or function name should be snake_case.**
```r
    rowRanges = NULL,  # recommended
    ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:107:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L107) *style:* **Variable or function name should be snake_case.**
```r
    rowData = NULL,    # not recommended
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:108:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L108) *style:* **Variable or function name should be snake_case.**
```r
    colData = NULL,
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:110:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L110) *style:* **Variable or function name should be snake_case.**
```r
    transgeneNames = NULL,
    ^~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:111:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    spikeNames = NULL
    ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:118:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L118) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(rowRanges, classes = c("GRanges", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:119:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L119) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(rowData, classes = c("DataFrame", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:122:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L122) *warning:* **no visible global function definition for ‘assert_is_null’**
```r
        assert_is_null(rowData)
        ^~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:124:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L124) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(colData, classes = c("DataFrame", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:125:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L125) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(metadata, classes = c("list", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:126:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L126) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(transgeneNames, classes = c("character", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:127:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L127) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(spikeNames, classes = c("character", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:136:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L136) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
    assert_are_identical(names(assays)[[1L]], "counts")
    ^~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:141:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L141) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
    assertHasValidDimnames(assay)
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:148:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L148) *style:* **Variable or function name should be snake_case.**
```r
    mcolsNames <- NULL
    ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:155:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L155) *warning:* **no visible global function definition for ‘assert_are_intersecting_sets’**
```r
        assert_are_intersecting_sets(rownames(assay), names(rowRanges))
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L156) *style:* **Variable or function name should be snake_case.**
```r
        mcolsNames <- names(mcols(rowRanges))
        ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L156) *warning:* **no visible global function definition for ‘mcols’, Did you mean 'acos'?**
```r
        mcolsNames <- names(mcols(rowRanges))
        ^~~~~
```
[R/makeSummarizedExperiment.R:160:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L160) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
            assert_is_subset(transgeneNames, setdiff)
            ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:161:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L161) *style:* **Variable or function name should be snake_case.**
```r
            transgeneRanges <- emptyRanges(
            ^~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:166:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L166) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- suppressWarnings(c(transgeneRanges, rowRanges))
            ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:171:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L171) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
            assert_is_subset(spikeNames, setdiff)
            ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:172:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L172) *style:* **Variable or function name should be snake_case.**
```r
            spikeRanges <- emptyRanges(
            ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:177:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L177) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- suppressWarnings(c(spikeRanges, rowRanges))
            ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:181:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L181) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), rownames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:182:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L182) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData[rownames(assay), , drop = FALSE]
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:185:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L185) *style:* **Variable or function name should be snake_case.**
```r
        rowRanges <- emptyRanges(names = rownames(assay))
        ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:185:22:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L185) *warning:* **no visible global function definition for ‘emptyRanges’**
```r
        rowRanges <- emptyRanges(names = rownames(assay))
                     ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:194:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L194) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(is(data, "DataFrame"))
    ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:213:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L213) *warning:* **no visible global function definition for ‘assert_has_names’**
```r
        assert_has_names(rowRanges)
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:214:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L214) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), names(rowRanges))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:215:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L215) *style:* **Variable or function name should be snake_case.**
```r
        rowRanges <- rowRanges[rownames(assay)]
        ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:217:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L217) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
        assertHasRownames(rowData)
        ^~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:218:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L218) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), rownames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:219:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L219) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData[rownames(assay), , drop = FALSE]
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:224:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L224) *style:* **Variable or function name should be snake_case.**
```r
        colData <- DataFrame(row.names = colnames(assay))
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:224:20:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L224) *warning:* **no visible global function definition for ‘DataFrame’**
```r
        colData <- DataFrame(row.names = colnames(assay))
                   ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:226:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L226) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(colnames(assay), rownames(colData))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:227:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L227) *style:* **Variable or function name should be snake_case.**
```r
    colData <- colData[colnames(assay), , drop = FALSE]
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:232:25:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L232) *warning:* **no visible global function definition for ‘realpath’**
```r
    metadata[["wd"]] <- realpath(".")
                        ^~~~~~~~
```
[R/makeSummarizedExperiment.R:233:34:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L233) *warning:* **no visible global function definition for ‘session_info’, Did you mean 'sessionInfo'?**
```r
    metadata[["sessionInfo"]] <- session_info(include_base = TRUE)
                                 ^~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:247:26:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/makeSummarizedExperiment.R#L247) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
    se <- do.call(what = SummarizedExperiment, args = args)
                         ^~~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:24:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L24) *style:* **Variable or function name should be snake_case.**
```r
mapCellsToSamples <- function(cells, samples) {
^~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:25:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L25) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(cells)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:26:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L26) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
    assert_has_no_duplicates(cells)
    ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:27:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L27) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(samples, c("character", "factor"))
    ^~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:39:41:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L39) *warning:* **no visible binding for global variable ‘barcodePattern’**
```r
        pattern <- paste0("^(", sample, barcodePattern)
                                        ^~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:57:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapCellsToSamples.R#L57) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
    assert_are_identical(length(cells), length(cell2sample))
    ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:69:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L69) *style:* **Variable or function name should be snake_case.**
```r
.mapGenes <- function(object, genes, strict = TRUE) {
^~~~~~~~~
```
[R/mapGenes-methods.R:70:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L70) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
    assert_is_all_of(object, "Gene2Symbol")
    ^~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:72:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L72) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(genes)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:73:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L73) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(genes)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:74:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L74) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(strict)
    ^~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:80:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L80) *warning:* **no visible global function definition for ‘assertAllAreUniqueGeneNames’**
```r
        assertAllAreUniqueGeneNames(object, genes)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:109:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L109) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(mapped)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:150:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L150) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:209:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L209) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:268:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/mapGenes-methods.R#L268) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:18:1:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L18) *style:* **Variable or function name should be snake_case.**
```r
matchInterestingGroups <- function(object, interestingGroups = NULL) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:18:44:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L18) *style:* **Variable or function name should be snake_case.**
```r
matchInterestingGroups <- function(object, interestingGroups = NULL) {
                                           ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:20:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L20) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- interestingGroups(object, check = FALSE)
        ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:25:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L25) *style:* **Variable or function name should be snake_case.**
```r
            interestingGroups <- "sampleName"
            ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L28) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:30:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L30) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(interestingGroups)
    ^~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/matchInterestingGroups.R#L31) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(interestingGroups)
    ^~~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:32:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L32) *style:* **Variable or function name should be snake_case.**
```r
        nonzeroGenes = FALSE,
        ^~~~~~~~~~~~
```
[R/meltCounts-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L36) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:37:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L37) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(nonzeroGenes)
        ^~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:41:19:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L41) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        counts <- assays(object)[[assay]]
                  ^~~~~~
```
[R/meltCounts-methods.R:42:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L42) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
        assert_is_non_empty(counts)
        ^~~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:61:13:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L61) *warning:* **no visible global function definition for ‘assert_is_function’**
```r
            assert_is_function(fun)
            ^~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:66:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/meltCounts-methods.R#L66) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/metrics-methods.R:81:17:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L81) *warning:* **no visible global function definition for ‘colData’**
```r
        data <- colData(object)
                ^~~~~~~
```
[R/metrics-methods.R:127:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L127) *warning:* **no visible global function definition for ‘assert_is_function’**
```r
        assert_is_function(FUN)
        ^~~~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:129:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L129) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(metrics, "grouped_df")
        ^~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:139:21:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L139) *warning:* **no visible global function definition for ‘select’**
```r
            data <- select(metrics, matches(pattern))
                    ^~~~~~
```
[R/metrics-methods.R:139:37:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L139) *warning:* **no visible global function definition for ‘matches’, Did you mean 'match'?**
```r
            data <- select(metrics, matches(pattern))
                                    ^~~~~~~
```
[R/metrics-methods.R:142:21:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L142) *warning:* **no visible global function definition for ‘select_if’**
```r
            data <- select_if(metrics, is.numeric)
                    ^~~~~~~~~
```
[R/metrics-methods.R:144:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L144) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
        assert_is_non_empty(data)
        ^~~~~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:145:9:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/metrics-methods.R#L145) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/microplate.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L31) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(plates)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:33:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L33) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(plates)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:35:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L35) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(wells)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:37:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L37) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(wells)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:38:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L38) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(wells, c(96L, 384L))
    ^~~~~~~~~~~~~~~~
```
[R/microplate.R:40:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L40) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(controls)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:42:5:](https://github.com/steinbaugh/basejump.experiment/blob/1f82906d1062565cb1568f31a2ac4f643ecda4dc/R/microplate.R#L42) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
    assert_all_are_non_negative(controls)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```


What a great package! Out of the box working very well, I am amazed. Thanks a lot!


@Sleepyowl This patch worked for me. Would you mind adding this is as PR at doxygen/doxygen? (I'm not sure if they are updating doxygen right now, but it would be useful for tracking).

BTW - I've added your patch to the instructions for [installing doxygen via spack.](https://github.com/spack/spack/pull/9681)


Look around to get enough data to make a worldmap.
Click the save button.
Later, click load and orient the device as shown in the picture and the scribbles wil be restored.


Here is an idea:
 bool earlyopening = (insert your code here);
 // In evaluate.cpp the evaluation is from the white point of view
  int ctmg = earlyopening ? ct / 2 : ct;
  contempt = (us == WHITE ?  make_score(ctmg, ct / 2)
                                              : -make_score(ctmg, ct / 2));

This way, the eg contempt are identical to master.


There is no change on API, you can just use the adam optimizer as before if you use TF in master branch.
Otherwise, you can copy&paste the op in your local branch as a custom op to use it.


*clap**clap*BOI


This commit breaks the timestamps for each post. See #878 .


Sorry for being nitpicking. This should be "declaration", and the function below with function bodies should be "definition".


@volkova229 kako je ovo proslo review? :P


=))
yeah I just want to test out cloud/lambda function


I just mean to put do the "attachInterrupt" on a button, like most of the examples do.  It won't save measurements more frequently, but you'll be able to view them.


This Folder contains all the plots


Зроби цей об‘єкт як статичне поле класу

Sent from my iPhone

> On Oct 31, 2018, at 4:13 PM, Danylo <notifications@github.com> wrote:
>
> Тобто? А як тоді ввести число?
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub, or mute the thread.


I thought that it was in vain to set 「_all」 every time I changed it


Why was the config.example.js-file removed?


The commit message says cherry-picked, but I can't see this code in the cherry.


Dear Poggit user,

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```
Resend this delivery later. This commit is triggered by user SavionLegends,
who has created 50 Poggit-CI builds in the past 168 hours.

Contact @SOF3 [on Discord](https://discord.gg/NgHf9jt) to request for extra
quota. We will increase your quota for free if you are really contributing
to open-source plugins actively without abusing Git commits.
```

As a result, no builds could be created from this commit. More details might be available for repo admins at [the webhook delivery response log](https://github.com/SavionLegends/MinigamesCore/settings/hooks) — see the webhook starting with `https://poggit.pmmp.io/webhooks.gh.repo` and look for the delivery with ID `2c3af15c-dd1a-11e8-94e4-1085554337ca`.

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It actually should be set after sending every chunk, but I thought it's okay since we are going to make the server sending an entire chunk once serving a client


Hi, is there any reason this class is not extending `UserLDAP`? It seems more logical to me.


This code should be moved to zephyr/CMakeLists.txt


This is most likely wrong as it should support React 16 and perhaps even 15. Anyone using an older version would be getting warnings.


That's what you think


i think the double inverted comma is missing ("___").

try it if it works;


"from it" -> "from your IDE"


Increased in the PR: https://github.com/alisw/AliRoot/pull/829

Chiara


And how exactly does having bigger muscles in your arms make you fat?


@andrew-leith The CLI script with argparse should be in `scripts/refchef-cook`


Oh, the horizon_length here is represented how many latest downloaded chunks are used for tputs prediction, so it can be arbitrarily large and not related with the maximum buffer level


你是傻逼吗，做这么烂还学前端


@pankajpatil29,

Greetings, this is Larry from Zoho Desk team. In order to rectify this problem during installation you will have to replace the below syntax in the project **Podfile** instead of the old one.

`pod 'ZohoDeskPortalSDK', :git => 'https://github.com/zoho/ZohoDeskPortalSDK.git', :branch => 'Xcode_10.0'`


Correct. The changes will be included in the 1.5.0 release—in the meantime you can use the gem from github, monkey patch the class in your application, build your own version of the gem etc.

You can submit issues [here](https://github.com/timcraft/month/issues).


@asbarkhan did you pull this branch and test it? if so, cool - but what tests?


@andrew-leith Do we still need this function, or can the yaml files be parsed using the loader from PyYaml / yamlloader?


哈哈，您开心就好咯


>muscles
lmao


It is better to be explicit about the dict in this part of the code rather than relaying it to `convert_ids()`.

Proposal:

1. Make `convert_ids()` take a list as input and return a list with properly formatted ID:s.
2. Make the code above:

```
constraints = {
    "ids": self.convert_ids(ids=ids),
}
```


This commit broke image generation for hd60.

```
2018-10-27 13:52:08: | DEBUG: Executing shell function do_image_hdfastboot8gb
2018-10-27 13:52:08: | 4096+0 records in
2018-10-27 13:52:08: | 4096+0 records out
2018-10-27 13:52:08: | 4194304 bytes (4.2 MB, 4.0 MiB) copied, 0.0043962 s, 954 MB/s
2018-10-27 13:52:08: | mkfs.fat 4.1 (2017-01-24)
2018-10-27 13:52:08: | Can't open /openpli/oe/develop/build/tmp/work/hd60-oe-linux-gnueabi/openpli-enigma2-image/1.0-r0/boot.img: No such file or directory
2018-10-27 13:52:08: | Cannot initialize '::'
2018-10-27 13:52:08: | Bad target ::
2018-10-27 13:52:08: | WARNING: exit code 1 from a shell command.
2018-10-27 13:52:08: | ERROR: Function failed: do_image_hdfastboot8gb (log file is located at /openpli/oe/develop/build/tmp/work/hd60-oe-linux-gnueabi/openpli-enigma2-image/1.0-r0/temp/log.do_image_hdfastboot8
2018-10-27 13:52:08: NOTE: recipe openpli-enigma2-image-1.0-r0: task do_image_hdfastboot8gb: Failed
2018-10-27 13:52:20: NOTE: Tasks Summary: Attempted 4652 tasks of which 4608 didn't need to be rerun and 1 failed.
```


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-144238 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-144238") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


[R/markdownHeader.R:26:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L26) *style:* **Variable or function name should be snake_case.**
```r
markdownHeader <- function(
^~~~~~~~~~~~~~
```
[R/markdownHeader.R:32:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L32) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(text)
    ^~~~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:33:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L33) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
    assert_all_are_non_missing_nor_empty_character(text)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:34:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L34) *warning:* **no visible global function definition for ‘assertIsHeaderLevel’**
```r
    assertIsHeaderLevel(level)
    ^~~~~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:35:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L35) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(tabset)
    ^~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:36:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L36) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(asis)
    ^~~~~~~~~~~~~~~~
```
[R/markdownHeader.R:39:21:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L39) *warning:* **no visible global function definition for ‘str_dup’**
```r
    header <- paste(str_dup("#", level), text)
                    ^~~~~~~
```
[R/markdownHeader.R:63:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownHeader.R#L63) *style:* **Variable or function name should be snake_case.**
```r
mdHeader <- markdownHeader
^~~~~~~~
```
[R/markdownLink.R:21:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L21) *style:* **Variable or function name should be snake_case.**
```r
markdownLink <- function(
^~~~~~~~~~~~
```
[R/markdownLink.R:26:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L26) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(text)
    ^~~~~~~~~~~~~~~~~~
```
[R/markdownLink.R:27:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L27) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(url)
    ^~~~~~~~~~~~~~~~~~
```
[R/markdownLink.R:28:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L28) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
    assertIsAStringOrNULL(title)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/markdownLink.R:40:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownLink.R#L40) *style:* **Variable or function name should be snake_case.**
```r
mdLink <- markdownLink
^~~~~~
```
[R/markdownList.R:17:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L17) *style:* **Variable or function name should be snake_case.**
```r
markdownList <- function(
^~~~~~~~~~~~
```
[R/markdownList.R:22:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L22) *warning:* **no visible global function definition for ‘assert_is_atomic’**
```r
    assert_is_atomic(text)
    ^~~~~~~~~~~~~~~~
```
[R/markdownList.R:24:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L24) *warning:* **no visible global function definition for ‘assert_all_are_not_na’**
```r
    assert_all_are_not_na(text)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/markdownList.R:25:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L25) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
    assert_all_are_non_missing_nor_empty_character(text)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/markdownList.R:26:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L26) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(ordered)
    ^~~~~~~~~~~~~~~~
```
[R/markdownList.R:27:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L27) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(asis)
    ^~~~~~~~~~~~~~~~
```
[R/markdownList.R:58:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownList.R#L58) *style:* **Variable or function name should be snake_case.**
```r
mdList <- markdownList
^~~~~~
```
[R/markdownPlotlist.R:21:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L21) *style:* **Variable or function name should be snake_case.**
```r
markdownPlotlist <- function(
^~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:23:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L23) *style:* **Variable or function name should be snake_case.**
```r
    headerLevel = 2L
    ^~~~~~~~~~~
```
[R/markdownPlotlist.R:25:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L25) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
    assert_is_list(plotlist)
    ^~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:26:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L26) *warning:* **no visible global function definition for ‘assert_has_names’**
```r
    assert_has_names(plotlist)
    ^~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:27:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L27) *warning:* **no visible global function definition for ‘assertIsHeaderLevel’**
```r
    assertIsHeaderLevel(headerLevel)
    ^~~~~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:32:36:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L32) *style:* **Variable or function name should be snake_case.**
```r
        FUN = function(name, plot, headerLevel) {
                                   ^~~~~~~~~~~
```
[R/markdownPlotlist.R:33:13:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L33) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
            assert_is_a_string(name)
            ^~~~~~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:34:13:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L34) *warning:* **no visible global function definition for ‘markdownHeader’**
```r
            markdownHeader(name, level = headerLevel, asis = TRUE)
            ^~~~~~~~~~~~~~
```
[R/markdownPlotlist.R:46:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownPlotlist.R#L46) *style:* **Variable or function name should be snake_case.**
```r
mdPlotlist <- markdownPlotlist
^~~~~~~~~~
```
[R/markdownTables.R:23:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L23) *style:* **Variable or function name should be snake_case.**
```r
markdownTables <- function(
^~~~~~~~~~~~~~
```
[R/markdownTables.R:28:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L28) *warning:* **no visible global function definition for ‘assert_is_list’**
```r
    assert_is_list(list)
    ^~~~~~~~~~~~~~
```
[R/markdownTables.R:29:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L29) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(captions)
    ^~~~~~~~~~~~~~~~~~~
```
[R/markdownTables.R:30:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L30) *warning:* **no visible global function definition for ‘assert_are_same_length’**
```r
    assert_are_same_length(list, captions)
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/markdownTables.R:31:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L31) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(force)
    ^~~~~~~~~~~~~~~~
```
[R/markdownTables.R:32:15:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L32) *warning:* **no visible binding for global variable ‘opts_knit’**
```r
    output <- opts_knit[["get"]]("rmarkdown.pandoc.to")
              ^~~~~~~~~
```
[R/markdownTables.R:38:17:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L38) *warning:* **no visible global function definition for ‘kable’, Did you mean 'table'?**
```r
                kable(x, caption = caption)
                ^~~~~
```
[R/markdownTables.R:43:9:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/markdownTables.R#L43) *warning:* **no visible global function definition for ‘asis_output’**
```r
        asis_output(tables)
        ^~~~~~~~~~~
```
[R/package.R:4:3:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/package.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/prepareTemplate.R:42:1:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L42) *style:* **Variable or function name should be snake_case.**
```r
prepareTemplate <- function(
^~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:45:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L45) *style:* **Variable or function name should be snake_case.**
```r
    sourceDir = NULL,
    ^~~~~~~~~
```
[R/prepareTemplate.R:48:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L48) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(package)
    ^~~~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:49:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L49) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(package, rownames(installed.packages()))
    ^~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:50:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L50) *warning:* **no visible global function definition for ‘assertIsAStringOrNULL’**
```r
    assertIsAStringOrNULL(sourceDir)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:51:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L51) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(overwrite)
    ^~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:57:9:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L57) *style:* **Variable or function name should be snake_case.**
```r
        sourceDir <- system.file(
        ^~~~~~~~~
```
[R/prepareTemplate.R:63:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L63) *warning:* **no visible global function definition for ‘assert_all_are_dirs’**
```r
    assert_all_are_dirs(sourceDir)
    ^~~~~~~~~~~~~~~~~~~
```
[R/prepareTemplate.R:67:5:](https://github.com/steinbaugh/basejump.markdown/blob/ca40b52bc70c99ff6652a25b58716c8502dba3f9/R/prepareTemplate.R#L67) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(files)
    ^~~~~~~~~~~~~~~~~~~
```


[R/raz_create_bd_alignment_file.R:16:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_bd_alignment_file.R#L16) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(bd_tree_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_bd_nltts_file.R:15:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_bd_nltts_file.R#L15) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(bd_tree_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_bd_nltts_file.R:16:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_bd_nltts_file.R#L16) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(bd_trees_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_bd_posterior_files.R:20:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_bd_posterior_files.R#L20) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(bd_alignment_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_bd_tree_file.R:14:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_bd_tree_file.R#L14) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(mbd_tree_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_bd_tree_file.R:17:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_bd_tree_file.R#L17) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(mbd_l_matrix_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_mbd_alignment_file.R:17:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_mbd_alignment_file.R#L17) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(mbd_tree_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_mbd_nltts_file.R:15:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_mbd_nltts_file.R#L15) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(mbd_tree_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_mbd_nltts_file.R:16:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_mbd_nltts_file.R#L16) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(mbd_trees_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/raz_create_mbd_posterior_files.R:20:3:](https://github.com/richelbilderbeek/razzo/blob/7973a5ebc2d112346aff86305abcfb0d75487842/R/raz_create_mbd_posterior_files.R#L20) *warning:* **no visible global function definition for ‘raz_check_file_exists’**
```r
  raz_check_file_exists(mbd_alignment_filename)
  ^~~~~~~~~~~~~~~~~~~~~
```


On -> At 😜


nice


Valve has been talking about PBA mainlining plans, so that may still happen, eventually. I'm not in touch with Henri so I don't know if anything is supposed to happen soon-ish or if that's still far away. I trust @zfigura 's expertise on the matter for sure though.. I'll bother him about it.


Throw new runtime?


I can't wait for the new version to come out. Is there already a timeline for 2.2?


@andrew-leith [see this link](https://www.python.org/dev/peps/pep-0257/#multi-line-docstrings) for PEP standards on docstrings. In addition to a brief description about what the function does, we need to have what the function expects as arguments.


Why was config.example.js removed?


Why this change?


Hahaha xD


Looks fine.


updated content


> So is this like a patch floated on top of GSL?

Yes. I'll PR upstream to allow this to be hooked.

> Is there any documentation/tooling on how our fork is maintained? What's the version of GSL being pulling in here?

I'll do that, and document the version.


it goes now further: https://build.haiku-os.org/buildmaster/master/x86_gcc2/logviewer.html?buildruns/2270/builds/31237.log


- Why are there no unit tests for this 😭?
- It's important to document this behaviour in the method's Javadoc, it's a public util..


Who are you?


I think I know your name.


Dear Poggit user,

This is an automatic message from Poggit-CI. Poggit-CI was triggered by this commit, but failed to create builds due to the following error:

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As a result, no builds could be created from this commit. More details might be available for repo admins at [the webhook delivery response log](https://github.com/SavionLegends/MinigamesCore/settings/hooks) — see the webhook starting with `https://poggit.pmmp.io/webhooks.gh.repo` and look for the delivery with ID `ef7c593e-dd1b-11e8-94d3-9df93320d445`.

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This function is represented whether the current state of channel and client is ready for the MPC algorithm. For example, the current client doesn't receive any chunks currently. Then, MPC algorithm is not ready, so the server chooses to use the original selecting algorithm.


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/editing-wiki-posts-at-same-time-as-someone-else-sometimes-loses-revisions/30741/20


I know that @Grokzen will prefer `P{0}`, i.e. add the format index number.


Same, `"{0} {1}".format(paste_id, paste)`.


@heshamMassoud You are right 😅


Single comment


更新


мабуть, я його забув видалити
але в моїй голові, на той час він мав щось робити)))


But the `observerWithHooks` function will not work in React < 16.7 right? How do we solve that?


Just wondering if text should be 'Enable development theme preview?' instead of just 'Enable development preview?' - more obvious as to what this pref does?


=> -> =X


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


My idea scala Code Style -> imports -> Class count to use import with "-" is configured to 5.  I will update.
```import kafka.utils.{Exit, Json, Logging, TestUtils, ZkUtils} => import kafka.utils._```


is the final  }   needed?

![capture](https://user-images.githubusercontent.com/40068957/47796888-9b95fc00-dcfb-11e8-80aa-4d4331948bdd.JPG)


IBM Cloud [toolchain](https://console.bluemix.net/devops/toolchains/c494835f-df5d-48e5-9264-1d09d32f77c2?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot"): [Delivery Pipeline](https://console.bluemix.net/devops/pipelines/6a68fc6a-d059-4a0e-8702-f98f3c5fd5d5?env_id=ibm%3Ayp%3Aeu-gb "watsonwork-pipeline-bot") deployed [watsonwork-pipeline-bot](https://github.com/WilliamHolmes/watsonwork-pipeline-bot/releases/tag/deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-145701 "deploy-ibm-yp-eu-gb-holmesw-ie.ibm.com-dev-20181031-145701") to [dev](https://console.bluemix.net/apps/f3173b48-637f-4fc1-b742-8468b99643a4?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:holmesw@ie.ibm.com:dev"), including this commit


@mauritsvanrees Jenkins CI reporting about code analysis
See the full report here: https://jenkins.plone.org/job/package-plone.intelligenttext/28/violations
```
plone/intelligenttext/tests.py:4:1: I003 isort expected 1 blank line in imports, found 0
plone/intelligenttext/tests.py:11:5: T003 print function found.
plone/intelligenttext/tests.py:21:10: C812 missing trailing comma
plone/intelligenttext/transforms.py:4:1: I003 isort expected 1 blank line in imports, found 0
plone/intelligenttext/transforms.py:22:9: P103 other string does contain unindexed parameters
plone/intelligenttext/transforms.py:22:80: E501 line too long (278 > 79 characters)
plone/intelligenttext/transforms.py:23:27: C812 missing trailing comma
plone/intelligenttext/transforms.py:27:27: C812 missing trailing comma
plone/intelligenttext/transforms.py:64:45: Q000 Remove bad quotes.
plone/intelligenttext/transforms.py:69:20: Q000 Remove bad quotes.
plone/intelligenttext/transforms.py:70:32: Q000 Remove bad quotes.
plone/intelligenttext/transforms.py:74:26: Q000 Remove bad quotes.
plone/intelligenttext/transforms.py:80:37: Q000 Remove bad quotes.
plone/intelligenttext/transforms.py:80:54: Q000 Remove bad quotes.
plone/intelligenttext/transforms.py:91:11: T000 Todo note found.
plone/intelligenttext/transforms.py:102:16: S001 found module formatter
plone/intelligenttext/transforms.py:112:16: S001 found module formatter
plone/intelligenttext/transforms.py:155:18: S001 found module formatter
plone/intelligenttext/transforms.py:181:44: C812 missing trailing comma
plone/intelligenttext/transforms.py:184:7: T000 Todo note found.
```
Follow [these instructions](https://github.com/plone/jenkins.plone.org/blob/master/docs/source/run-qa-on-package.rst) to reproduce it locally.


Wrong message, add inspection age in days...


Successfully aliased the URL <https://docs-api-wrdxwyklza.now.sh> to the following alias.

* https://docs.api.nuxtjs.org


Comment on e9e7d5d0e50237a3c9f01bd63e157224b4fcd3b1.

There are 17 results for the section all.cpp. They have been shortened and will not be shown inline because they are more than 10.

| Message | File | Line |
|---|---|---|
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 2 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 4 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 7 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 14 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 17 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 20 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 23 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 24 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 26 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 37 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 44 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 49 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 51 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 55 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 63 |
| Line contains following spacing inconsistencies: - Trailing whitespaces. | quicksort/C/quicksort.cpp | 66 |
| Line contains following spacing inconsistencies: - No newline at EOF. | quicksort/C/quicksort.cpp | 68 |

Until GitMate provides an online UI to show a better overview, you can run [coala](https://coala.io/) locally for more details.