[R/dEploidPlotly.R:28:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L28) *style:* **Variable or function name should be snake_case.**
```r
plotAltVsRefPlotly <- function(ref, alt, title = "Alt vs Ref",
^~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:29:32:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L29) *style:* **Variable or function name should be snake_case.**
```r
                               potentialOutliers = c()){
                               ^~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:31:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L31) *style:* **Variable or function name should be snake_case.**
```r
    legendName <- "Ref/(Ref+Alt) Ratio"
    ^~~~~~~~~~
```
[R/dEploidPlotly.R:33:14:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L33) *style:* **Variable or function name should be snake_case.**
```r
    refvsalt$ref.out <- ifelse(rownames(refvsalt) %in%
             ^~~~~~~
```
[R/dEploidPlotly.R:35:14:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L35) *style:* **Variable or function name should be snake_case.**
```r
    refvsalt$alt.out <- ifelse(rownames(refvsalt) %in%
             ^~~~~~~
```
[R/dEploidPlotly.R:107:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L107) *style:* **Variable or function name should be snake_case.**
```r
plotHistWSAFPlotly <- function(obsWSAF, exclusive = TRUE,
^~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:107:32:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L107) *style:* **Variable or function name should be snake_case.**
```r
plotHistWSAFPlotly <- function(obsWSAF, exclusive = TRUE,
                               ^~~~~~~
```
[R/dEploidPlotly.R:109:3:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L109) *style:* **Variable or function name should be snake_case.**
```r
  tmpWSAFIndex <- 1:length(obsWSAF)
  ^~~~~~~~~~~~
```
[R/dEploidPlotly.R:111:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
    ^~~~~~~~~~~~
```
[R/dEploidPlotly.R:175:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L175) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFVsPLAFPlotly <- function(plaf, obsWSAF, ref, alt,
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:175:40:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L175) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFVsPLAFPlotly <- function(plaf, obsWSAF, ref, alt,
                                       ^~~~~~~
```
[R/dEploidPlotly.R:177:34:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L177) *style:* **Variable or function name should be snake_case.**
```r
                                 potentialOutliers = c()){
                                 ^~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:179:16:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L179) *style:* **Variable or function name should be snake_case.**
```r
    wsafvsplaf$plaf.out <- ifelse(rownames(wsafvsplaf) %in%
               ^~~~~~~~
```
[R/dEploidPlotly.R:181:16:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L181) *style:* **Variable or function name should be snake_case.**
```r
    wsafvsplaf$obsWSAF.out <- ifelse(rownames(wsafvsplaf) %in%
               ^~~~~~~~~~~
```
[R/dEploidPlotly.R:236:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
^~~~~~~~~~~~~~~~~~~~
```
[R/dEploidPlotly.R:236:34:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
                                 ^~~~~~~
```
[R/dEploidPlotly.R:236:43:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/dEploidPlotly.R#L236) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAFPlotly <- function(obsWSAF, expWSAF,
                                          ^~~~~~~
```
[R/DEploidR.R:23:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:23:36:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
                                   ^~~~~~~~~~~
```
[R/DEploidR.R:23:49:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L23) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromTxt <- function(refFileName, altFileName){
                                                ^~~~~~~~~~~
```
[R/DEploidR.R:54:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:54:36:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
                                   ^~~~~~~~~~~
```
[R/DEploidR.R:54:49:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L54) *style:* **Variable or function name should be snake_case.**
```r
extractCoverageFromVcf <- function(vcfFileName, ADFieldIndex = 2){
                                                ^~~~~~~~~~~~
```
[R/DEploidR.R:62:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L62) *style:* **Variable or function name should be snake_case.**
```r
    numberOfHeaderLines <- 0
    ^~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:66:13:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L66) *style:* **Variable or function name should be snake_case.**
```r
            numberOfHeaderLines <- numberOfHeaderLines + 1
            ^~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:78:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L78) *style:* **Variable or function name should be snake_case.**
```r
    sampleName <- names(vcf)[10]
    ^~~~~~~~~~
```
[R/DEploidR.R:83:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L83) *style:* **Variable or function name should be snake_case.**
```r
    tmpCovStr <- unlist(lapply(field, `[[`, ADFieldIndex))
    ^~~~~~~~~
```
[R/DEploidR.R:84:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L84) *style:* **Variable or function name should be snake_case.**
```r
    tmpCov <- strsplit(as.character(tmpCovStr), ",")
    ^~~~~~
```
[R/DEploidR.R:86:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L86) *style:* **Variable or function name should be snake_case.**
```r
    refCount <- as.numeric(unlist(lapply(tmpCov, `[[`, 1)))
    ^~~~~~~~
```
[R/DEploidR.R:87:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L87) *style:* **Variable or function name should be snake_case.**
```r
    altCount <- as.numeric(unlist(lapply(tmpCov, `[[`, 2)))
    ^~~~~~~~
```
[R/DEploidR.R:114:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L114) *style:* **Variable or function name should be snake_case.**
```r
extractPLAF <- function(plafFileName){
^~~~~~~~~~~
```
[R/DEploidR.R:114:25:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L114) *style:* **Variable or function name should be snake_case.**
```r
extractPLAF <- function(plafFileName){
                        ^~~~~~~~~~~~
```
[R/DEploidR.R:151:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L151) *style:* **Variable or function name should be snake_case.**
```r
plotProportions <- function(proportions, title = "Components",
^~~~~~~~~~~~~~~
```
[R/DEploidR.R:152:24:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                       ^~~~~~~
```
[R/DEploidR.R:152:37:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                                    ^~~~~~~~
```
[R/DEploidR.R:152:51:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L152) *style:* **Variable or function name should be snake_case.**
```r
                       cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                  ^~~~~~~~
```
[R/DEploidR.R:153:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L153) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColorBin <- 16
    ^~~~~~~~~~~~~~~
```
[R/DEploidR.R:200:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L200) *style:* **Variable or function name should be snake_case.**
```r
plotAltVsRef <- function(ref, alt, title = "Alt vs Ref",
^~~~~~~~~~~~
```
[R/DEploidR.R:201:21:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L201) *style:* **Variable or function name should be snake_case.**
```r
                    exclude.ref = c(), exclude.alt = c(),
                    ^~~~~~~~~~~
```
[R/DEploidR.R:201:40:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L201) *style:* **Variable or function name should be snake_case.**
```r
                    exclude.ref = c(), exclude.alt = c(),
                                       ^~~~~~~~~~~
```
[R/DEploidR.R:202:21:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                    ^~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:202:46:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                                             ^~~~~~~
```
[R/DEploidR.R:202:59:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L202) *style:* **Variable or function name should be snake_case.**
```r
                    potentialOutliers = c(), cex.lab = 1, cex.main = 1,
                                                          ^~~~~~~~
```
[R/DEploidR.R:203:21:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L203) *style:* **Variable or function name should be snake_case.**
```r
                    cex.axis = 1){
                    ^~~~~~~~
```
[R/DEploidR.R:207:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L207) *style:* **Variable or function name should be snake_case.**
```r
    tmpRange <- 1.1 * mean(max(alt), max(ref))
    ^~~~~~~~
```
[R/DEploidR.R:266:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L266) *style:* **Variable or function name should be snake_case.**
```r
histWSAF <- function(obsWSAF, exclusive = TRUE,
^~~~~~~~
```
[R/DEploidR.R:266:22:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L266) *style:* **Variable or function name should be snake_case.**
```r
histWSAF <- function(obsWSAF, exclusive = TRUE,
                     ^~~~~~~
```
[R/DEploidR.R:268:17:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                ^~~~~~~
```
[R/DEploidR.R:268:30:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                             ^~~~~~~~
```
[R/DEploidR.R:268:44:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L268) *style:* **Variable or function name should be snake_case.**
```r
                cex.lab = 1, cex.main = 1, cex.axis = 1){
                                           ^~~~~~~~
```
[R/DEploidR.R:269:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L269) *style:* **Variable or function name should be snake_case.**
```r
    tmpWSAFIndex <- 1:length(obsWSAF)
    ^~~~~~~~~~~~
```
[R/DEploidR.R:271:9:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L271) *style:* **Variable or function name should be snake_case.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
        ^~~~~~~~~~~~
```
[R/DEploidR.R:271:31:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L271) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                              ^
```
[R/DEploidR.R:271:33:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L271) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        tmpWSAFIndex <- which( ( (obsWSAF < 1) * (obsWSAF > 0)) == 1)
                                ^
```
[R/DEploidR.R:323:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
^~~~~~~~~~~~~~
```
[R/DEploidR.R:323:34:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
                                 ^~~~~~~
```
[R/DEploidR.R:323:43:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L323) *style:* **Variable or function name should be snake_case.**
```r
plotWSAFvsPLAF <- function(plaf, obsWSAF, expWSAF = c(),
                                          ^~~~~~~
```
[R/DEploidR.R:324:23:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L324) *style:* **Variable or function name should be snake_case.**
```r
                      potentialOutliers = c(), title = "WSAF vs PLAF",
                      ^~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:325:23:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                      ^~~~~~~
```
[R/DEploidR.R:325:36:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                   ^~~~~~~~
```
[R/DEploidR.R:325:50:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L325) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                 ^~~~~~~~
```
[R/DEploidR.R:368:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L368) *style:* **Lines should not be more than 80 characters.**
```r
#' prop = PG0390CoverageV.deconv$Proportions[dim(PG0390CoverageV.deconv$Proportions)[1],]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:373:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
^~~~~~~~~~~~~~
```
[R/DEploidR.R:373:28:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
                           ^~~~~~~
```
[R/DEploidR.R:373:37:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L373) *style:* **Variable or function name should be snake_case.**
```r
plotObsExpWSAF <- function(obsWSAF, expWSAF,
                                    ^~~~~~~
```
[R/DEploidR.R:375:23:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                      ^~~~~~~
```
[R/DEploidR.R:375:36:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                   ^~~~~~~~
```
[R/DEploidR.R:375:50:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L375) *style:* **Variable or function name should be snake_case.**
```r
                      cex.lab = 1, cex.main = 1, cex.axis = 1){
                                                 ^~~~~~~~
```
[R/DEploidR.R:411:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L411) *style:* **Variable or function name should be snake_case.**
```r
computeObsWSAF <- function(alt, ref){
^~~~~~~~~~~~~~
```
[R/DEploidR.R:432:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
^~~~~~~~~~~~~~~~
```
[R/DEploidR.R:432:30:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
                             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:432:66:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L432) *style:* **Variable or function name should be snake_case.**
```r
haplotypePainter <- function(posteriorProbabilities, title = "", labelScaling,
                                                                 ^~~~~~~~~~~~
```
[R/DEploidR.R:433:25:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L433) *style:* **Variable or function name should be snake_case.**
```r
                        numberOfInbreeding = 0){
                        ^~~~~~~~~~~~~~~~~~
```
[R/DEploidR.R:434:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L434) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColorBin <- 16
    ^~~~~~~~~~~~~~~
```
[R/DEploidR.R:435:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L435) *style:* **Variable or function name should be snake_case.**
```r
    rainbowColors <- rainbow(rainbowColorBin)
    ^~~~~~~~~~~~~
```
[R/DEploidR.R:437:9:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L437) *style:* **Variable or function name should be snake_case.**
```r
        panelSize <- dim(posteriorProbabilities)[2] - numberOfInbreeding
        ^~~~~~~~~
```
[R/DEploidR.R:438:9:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L438) *style:* **Variable or function name should be snake_case.**
```r
        rainbowColors <- c(rep("#46a8e1", panelSize),
        ^~~~~~~~~~~~~
```
[R/DEploidR.R:446:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L446) *style:* **Variable or function name should be snake_case.**
```r
    newXaxt <- round(seq(1, dim(posteriorProbabilities)[1], length.out = 6))
    ^~~~~~~
```
[R/DEploidR.R:449:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/R/DEploidR.R#L449) *style:* **Variable or function name should be snake_case.**
```r
    newYaxt <- seq(0, 1, length.out = 3)
    ^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:3:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L3) *style:* **Variable or function name should be snake_case.**
```r
vcfFileName <- system.file("extdata", "PG0390-C.test.vcf.gz",
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:5:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L5) *style:* **Variable or function name should be snake_case.**
```r
plafFileName <- system.file("extdata", "labStrains.test.PLAF.txt",
^~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:7:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L7) *style:* **Variable or function name should be snake_case.**
```r
panelFileName <- system.file("extdata", "labStrains.test.panel.txt",
^~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:9:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L9) *style:* **Variable or function name should be snake_case.**
```r
refFileName <- system.file("extdata", "PG0390-C.test.ref", package = "DEploid")
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:10:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L10) *style:* **Variable or function name should be snake_case.**
```r
altFileName <- system.file("extdata", "PG0390-C.test.alt", package = "DEploid")
^~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:12:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L12) *style:* **Variable or function name should be snake_case.**
```r
PG0390CoverageVcf <- extractCoverageFromVcf(vcfFileName)
^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:15:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L15) *style:* **Variable or function name should be snake_case.**
```r
PG0390Deconv <- dEploid(paste("-vcf", vcfFileName, "-plaf", plafFileName,
^~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:18:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L18) *style:* **Variable or function name should be snake_case.**
```r
expWSAF <- t(PG0390Deconv$Haps) %*% prop
^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:21:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L21) *style:* **Variable or function name should be snake_case.**
```r
    PG0390CoverageTxt <- extractCoverageFromTxt(refFileName, altFileName)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:44:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L44) *style:* **Variable or function name should be snake_case.**
```r
    obsWSAF <- computeObsWSAF(PG0390CoverageVcf$altCount,
    ^~~~~~~
```
[tests/testthat/test-DEploid_tools.R:46:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L46) *style:* **Variable or function name should be snake_case.**
```r
    potentialOutliers <- c(5, 12, 25, 30, 35, 50)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:127:5:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L127) *style:* **Variable or function name should be snake_case.**
```r
    potentialOutliers <- c(1, 10, 20, 30, 40)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-DEploid_tools.R:133:55:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-DEploid_tools.R#L133) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                 potentialOutliers = potentialOutliers )
                                                      ^
```
[tests/testthat/test-dEploid.R:3:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-dEploid.R#L3) *style:* **Variable or function name should be snake_case.**
```r
vcfFileName <- system.file("extdata", "PG0390-C.test.vcf.gz",
^~~~~~~~~~~
```
[tests/testthat/test-dEploid.R:5:1:](https://github.com/mcveanlab/DEploid-r/blob/d9482fe990c70002185f6cae88ff374732ab9f12/tests/testthat/test-dEploid.R#L5) *style:* **Variable or function name should be snake_case.**
```r
plafFileName <- system.file("extdata", "labStrains.test.PLAF.txt",
^~~~~~~~~~~~
```


### Visual regression report:

[![Visual report](https://circleci.com/gh/stevector/nerdologues-d8/1952/artifacts/0/artifacts/backstop_data/bitmaps_test/20181020-024506/failed_diff_0600294051_Events_0_document_0_desktop.png)](https://circleci.com/gh/stevector/nerdologues-d8/1952/artifacts/0/artifacts/backstop_data/html_report/index.html)


I guess that a better translation would be "Boa tentativa, mas eu posso expulsar ou banir por mim mesmo" the original phrase was: **"Nice try, but I can't kick or ban myself"** and I propose **"Boa tentativa, mas eu não posso expulsar ou banir a mim mesmo"**


simple flashcards lab done


Submitted request for opensuse.

Sent from handheld device. Pardon the typos and brevity.

Sent from BlueMail

On 20 Oct 2018, 04:36, at 04:36, Arun Prakash Jana <notifications@github.com> wrote:
>Thank you!
>
>--
>You are receiving this because you were mentioned.
>Reply to this email directly or view it on GitHub:
>https://github.com/jarun/nnn/commit/d4ab97cb5468035f77d24317f87f78045798762e#commitcomment-30978180


@franckc would it be appropriate to add `dotenv` here to support running -discovery outside the box?


DearBill-Gray,

Thanks for your excellent work.

when I test the program testeph.cpp with DE405 file, it shows as followed.
(The file tested by the jpl fortran version works well, but some problems for the c++code.
it says the test year  is 1600, but my file is from 1960-2100).

Could you kindly give some advice how to modify the test date.(guoaizhi@asch.whigg.ac.cn)

OS:  Win7-32 bit

Best regrads,

AizhiGuo

----------------------------------------------------------------------------------------------------------------------------

F:\de405\de405\testephcdd\Release>testephcdd.exe JPLEPH -ttestpo.405

 JPL test-ephemeris program (v.1.2)
 C version translated from the original JPL FORTRAN code.

Ephemeris initialized
156 constants
2436912.500000000  2495376.500000000  32.000000000
DENUM    0.0000000000000000E+000   ZM       0.0000000000000000E+000
LENUM    0.0000000000000000E+000   XDM      0.0000000000000000E+000
TDATEF   0.0000000000000000E+000   YDM      0.0000000000000000E+000
TDATEB   0.0000000000000000E+000   ZDM      0.0000000000000000E+000
CENTER   0.0000000000000000E+000   XS       0.0000000000000000E+000
CLIGHT   0.0000000000000000E+000   YS       0.0000000000000000E+000
AU       0.0000000000000000E+000   ZS       0.0000000000000000E+000
EMRAT    0.0000000000000000E+000   XDS      0.0000000000000000E+000
GM1      0.0000000000000000E+000   YDS      0.0000000000000000E+000
GM2      0.0000000000000000E+000   ZDS      0.0000000000000000E+000
GMB      0.0000000000000000E+000   BETA     0.0000000000000000E+000
GM4      0.0000000000000000E+000   GAMMA    0.0000000000000000E+000
GM5      0.0000000000000000E+000   J2SUN    0.0000000000000000E+000
GM6      0.0000000000000000E+000   GDOT     0.0000000000000000E+000
GM7      0.0000000000000000E+000   MA0001   0.0000000000000000E+000
GM8      0.0000000000000000E+000   MA0002   0.0000000000000000E+000
GM9      0.0000000000000000E+000   MA0004   0.0000000000000000E+000
GMS      0.0000000000000000E+000   MAD1     0.0000000000000000E+000
RAD1     0.0000000000000000E+000   MAD2     0.0000000000000000E+000
RAD2     0.0000000000000000E+000   MAD3     0.0000000000000000E+000
RAD4     0.0000000000000000E+000   RE       0.0000000000000000E+000
JDEPOC   0.0000000000000000E+000   ASUN     0.0000000000000000E+000
X1       0.0000000000000000E+000   PHI      0.0000000000000000E+000
Y1       0.0000000000000000E+000   THT      0.0000000000000000E+000
Z1       0.0000000000000000E+000   PSI      0.0000000000000000E+000
XD1      0.0000000000000000E+000   OMEGAX   0.0000000000000000E+000
YD1      0.0000000000000000E+000   OMEGAY   0.0000000000000000E+000
ZD1      0.0000000000000000E+000   OMEGAZ   0.0000000000000000E+000
X2       0.0000000000000000E+000   AM       0.0000000000000000E+000
Y2       0.0000000000000000E+000   J2M      0.0000000000000000E+000
Z2       0.0000000000000000E+000   J3M      0.0000000000000000E+000
XD2      0.0000000000000000E+000   J4M      0.0000000000000000E+000
YD2      0.0000000000000000E+000   C22M     0.0000000000000000E+000
ZD2      0.0000000000000000E+000   C31M     0.0000000000000000E+000
XB       0.0000000000000000E+000   C32M     0.0000000000000000E+000
YB       0.0000000000000000E+000   C33M     0.0000000000000000E+000
ZB       0.0000000000000000E+000   S31M     0.0000000000000000E+000
XDB      0.0000000000000000E+000   S32M     0.0000000000000000E+000
YDB      0.0000000000000000E+000   S33M     0.0000000000000000E+000
ZDB      0.0000000000000000E+000   C41M     0.0000000000000000E+000
X4       0.0000000000000000E+000   C42M     0.0000000000000000E+000
Y4       0.0000000000000000E+000   C43M     0.0000000000000000E+000
Z4       0.0000000000000000E+000   C44M     0.0000000000000000E+000
XD4      0.0000000000000000E+000   S41M     0.0000000000000000E+000
YD4      0.0000000000000000E+000   S42M     0.0000000000000000E+000
ZD4      0.0000000000000000E+000   S43M     0.0000000000000000E+000
X5       0.0000000000000000E+000   S44M     0.0000000000000000E+000
Y5       0.0000000000000000E+000   LBET     0.0000000000000000E+000
Z5       0.0000000000000000E+000   LGAM     0.0000000000000000E+000
XD5      0.0000000000000000E+000   K2M      0.0000000000000000E+000
YD5      0.0000000000000000E+000   TAUM     0.0000000000000000E+000
ZD5      0.0000000000000000E+000   AE       0.0000000000000000E+000
X6       0.0000000000000000E+000   J2E      0.0000000000000000E+000
Y6       0.0000000000000000E+000   J3E      0.0000000000000000E+000
Z6       0.0000000000000000E+000   J4E      0.0000000000000000E+000
XD6      0.0000000000000000E+000   K2E0     0.0000000000000000E+000
YD6      0.0000000000000000E+000   K2E1     0.0000000000000000E+000
ZD6      0.0000000000000000E+000   K2E2     0.0000000000000000E+000
X7       0.0000000000000000E+000   TAUE0    0.0000000000000000E+000
Y7       0.0000000000000000E+000   TAUE1    0.0000000000000000E+000
Z7       0.0000000000000000E+000   TAUE2    0.0000000000000000E+000
XD7      0.0000000000000000E+000   DROTEX   0.0000000000000000E+000
YD7      0.0000000000000000E+000   DROTEY   0.0000000000000000E+000
ZD7      0.0000000000000000E+000   GMAST1   0.0000000000000000E+000
X8       0.0000000000000000E+000   GMAST2   0.0000000000000000E+000
Y8       0.0000000000000000E+000   GMAST3   0.0000000000000000E+000
Z8       0.0000000000000000E+000   KVC      0.0000000000000000E+000
XD8      0.0000000000000000E+000   IFAC     0.0000000000000000E+000
YD8      0.0000000000000000E+000   PHIC     0.0000000000000000E+000
ZD8      0.0000000000000000E+000   THTC     0.0000000000000000E+000
X9       0.0000000000000000E+000   PSIC     0.0000000000000000E+000
Y9       0.0000000000000000E+000   OMGCX    0.0000000000000000E+000
Z9       0.0000000000000000E+000   OMGCY    0.0000000000000000E+000
XD9      0.0000000000000000E+000   OMGCZ    0.0000000000000000E+000
YD9      0.0000000000000000E+000   PSIDOT   0.0000000000000000E+000
ZD9      0.0000000000000000E+000   MGMIS    0.0000000000000000E+000
XM       0.0000000000000000E+000   ROTEX    0.0000000000000000E+000
YM       0.0000000000000000E+000   ROTEY    0.0000000000000000E+000
emrat = 81.300560000000004      AU = 149597870.69100
 LINE  JED    t# c# x#  --- JPL value ---   --- user value --   -- difference --
   1  2305447.5  8  3  1  -26.32278087944000000000    0.00000000000000000000 26.32278087
Error message: 'Outside date range'
WARNING:  The test file tests items outside the range
of this ephemeris!
The input ephemeris file covers years from 1959.9 to 2120.0.
The test is for the year 1600.0
It's common for DE files to be built that cover a subset of the
range of the original ephemerides,  so this may not be an error.
  Further errors of this type won't be shown,  but you'll get a count
  of how many are found. (Use the '-a' switch to report all errors.)
  Hit any key:

*****  warning : next difference >= tolerance *****
405  1960.01.01 2436934.5  5  6  1      -3.0768071291340
4321  2436934.5  5  6  1   -3.07680712913400000000    0.00000000000000000000 3.076807129
Error message: 'Result outside acceptable error tolerance'
  Further errors of this type won't be shown,  but you'll get a count
  of how many are found. (Use the '-a' switch to report all errors.)
  Hit any key:

4400  2439338.5  5  3  1   -2.04863298236280000000    0.00000000000000000000 2.048632982
4500  2442382.5  1  7  3    3.31189516702040000000   -3.34112562357699970000 -6.65302079
4600  2445425.5  4  6  6    0.00722447508259999990   -0.00404419983461740130 -0.01126867
4700  2448469.5  1 12  2   -0.40900459247700000000    0.00000000000000000000 0.409004592
4800  2451513.5 11  8  3    9.84386615071960060000    0.00000000000000000000 -9.84386615
4900  2454557.5  4  6  3   -1.24153067823279990000    0.00000000000000000000 1.241530678
5000  2457601.5  9  1  5    0.01937280970109999900   -0.00433056799513323580 -0.02370337
5100  2460645.5  1  5  4   -0.01725003651139999900    0.00000000000000000000 0.017250036
5200  2463688.5  3 13  4    0.00000345011430000000    0.00000000000000000000 -0.00000345
5300  2466732.5 11 13  2    0.72812566705019999000    0.00000000000000000000 -0.72812566
5400  2469776.5 11  7  1   17.79460522169170000000    8.64117989887277280000 -9.15342532
5500  2472819.5 11  5  1   -4.95784169961190010000   -0.47458828209139781000 4.483253417
5600  2475863.5 12  2  6    0.00196227279820000020    0.00000000000000000000 -0.00196227
5700  2478907.5 14  0  4   -0.00000019973810000000    0.00000000000000000000 0.000000199
5800  2481950.5  4  1  2    1.25072002548160000000    0.00000000000000000000 -1.25072002
5900  2484994.5 13 12  6    0.00416439946460000000    0.00671388946073887220 0.002549489
6000  2488038.5  5  4  4    0.01093868513420000000    0.00000000000000000000 -0.01093868
6100  2491081.5  6 10  1    4.62726718217160030000    0.00000000000000000000 -4.62726718
6200  2494125.5  5 11  4    0.00387610297759999980    0.00000000000000000000 -0.00387610
0 1 7.25920965e+001 *
0 2 6.33047517e+001 *
0 3 3.48149319e+001 *
0 4 6.79717600e-002 *
0 5 4.31016247e-002 *
0 6 2.68031583e-002 *
1 1 1.52704578e-004 *
1 2 4.70292698e-005 *
1 3 9.20422458e-007 *
1 4 4.44891445e-007 *
2 1 1.28879392e-001 *
2 2 4.24208131e-001 *
2 3 1.15862843e+004 *
2 4 5.78981800e-004 *
2 5 2.03043770e-004 *
2 6 2.30404968e-001 *
7214 lines read and tested in 49.564 seconds
1921 lines failed with error code 0 ('Result outside acceptable error tolerance').
5293 lines failed with error code -1 ('Outside date range').


Карлос вышел из тюрьмы?


In attempt to resolve `from storages.backend.s3boto3 import S3Boto3Storage ModuleNotFoundError: No module named 'storages.backend'.` error.

Source: https://stackoverflow.com/a/42015317/5971137


Set the Stored_Unit's phase_ to "scouting"


Remove the unit's phase_ scouting


[GAME_MASTER 20_10_2018.txt](https://github.com/VGCManiac/pogo/files/2498485/GAME_MASTER.20_10_2018.txt)


Successfully aliased the URL <https://lingonsaft-hacktober-vysvmktayj.now.sh> to the following alias.

* https://hacktoberfest.lingonsaft.com


Successfully aliased the URL <https://lingonsaft-hacktober-nizypoejwu.now.sh> to the following alias.

* https://hacktoberfest.lingonsaft.com


Pedantically, we could do something like "if the first available unit type shoots air" do not scout with overlords until overlord speed is complete.

We could also add a preference for not scouting with overlords if we are "supply starved"


Yes, ruby-2.4 works with OpenSSL-1.1, but the upgrade changes the ruby API. Therefore we'll have to stay on OpenSSL-1.0 for the lifetime of RubyInstaller-2.4.


{
   "title" : "Decode JSON",
   "ID" : 20,
   "buttons" :
   [
    	    {
		"title" : "https://play.google.com/store/apps/details?id=com.QuizGame.millionnaire",
		"image" : "https://raw.githubusercontent.com/gadeceex/NobGames/master/milionaireMINI.jpg"
	 },
	 {
		"title" : "https://play.google.com/store/apps/details?id=com.kGoNuibe.deliveryboy.cityicecream.virtuallifegame",
		"image" : "https://raw.githubusercontent.com/gadeceex/NobGames/master/ice-cream-deliveryMINI.png"
	 },

	   	    {
		"title" : "https://play.google.com/store/apps/details?id=com.kGoNuib.impossible.bmx.bicycle",
		"image" : "https://raw.githubusercontent.com/gadeceex/NobGames/master/downhillMINI.jpg"
	 },
	 {
		"title" : "https://play.google.com/store/apps/details?id=com.nGoNuib.SuperHero.StuntBike.Race",
		"image" : "https://raw.githubusercontent.com/gadeceex/NobGames/master/superhiro-bikeStuntMINI.png"
	 }

   ]
}0


The following doc(s) have been deployed to the [allenfearp](https://allenfearp-static-docs.pantheonsite.io/docs) Multidev environment:
- [/docs/support](https://allenfearp-static-docs.pantheonsite.io/docs/support)


![](https://github.trello.services/images/mini-trello-icon.png) [Clean up Channel](https://trello.com/c/zgCAhM5H/55-clean-up-channel)


[R/dEploidPlotly.R:111:27:](https://github.com/mcveanlab/DEploid-r/blob/d58fd22b3c0db60326dcf1081bf58d239079780e/R/dEploidPlotly.R#L111) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
                          ^
```
[R/dEploidPlotly.R:111:28:](https://github.com/mcveanlab/DEploid-r/blob/d58fd22b3c0db60326dcf1081bf58d239079780e/R/dEploidPlotly.R#L111) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
                           ^
```


Talking about sheer speed, somehow this reminds of ElitistF_g.

Back in 2009 and 2010 and 2011 and 2012, i used to spend my  time
illegally downloading and discovering new music and stuff

Ok, it was 2009 or 2010 and i was browsing the newly added torrents in
a (now) private bittorrent tracker, when i saw a 30-35GB torrent
added, it was a HDTV-rip of the rock in Japan festival (first day, 3-4
hours), i decided to track the activity of that torrent, and
apparently in a matter of minutes or hours there was more than 5
seeders, and someone had already uploaded a few terabytes. It was him.
From then on i followed his activity, he uploaded two more big files
and more HDTV stuff, until one day, when he announced the end of his
activities. But people say he (briely) continued releasing stuff under
the name "MusicJews" outside the tracker..

This happened a couple years later i think but i found it funny when a
moderador of the forum was banned, i rarely read the tracker forum but
i knew he was a mod, his user title was changed to 'dark ominous
c_nt'... one or 2 months later, there was someone commenting with the
same style but a different username, "IAMRIHANNA", with the user title
'dark luminous c_nt', now a super vip, and i knew it was him.


The recommend installation on Windows suggests using Chocolatey. The most recent version of the dtc-msys2 package in the Chocolatey package manager is 1.4.4 so with this change, testing for version 1.4.6, the installation instructions no longer work.


[R/dEploidPlotly.R:111:27:](https://github.com/mcveanlab/DEploid-r/blob/09dc53c1793db5da3f6a8bfe815c6e788d3d2ca3/R/dEploidPlotly.R#L111) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
                          ^
```
[R/dEploidPlotly.R:111:28:](https://github.com/mcveanlab/DEploid-r/blob/09dc53c1793db5da3f6a8bfe815c6e788d3d2ca3/R/dEploidPlotly.R#L111) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    tmpWSAFIndex <- which(((obsWSAF < 1) * (obsWSAF > 0)) == 1)
                           ^
```


To wait for postgres to be ready I used a line like this -> "until docker exec postgres pg_isready; do sleep 1; done"


Made additional changes to slides per recommedations


Additional changes on merged data


.ipynb folder still needs to be removed from the repository. @Corneliuscob


calculation example


deletando classe teste


I somehow missed the fact that there was a merge conflict, so did not resolve it properly (removing the <<<<< HEAD  tags etc).  Hopefully its fixed now...


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hmm, i missed that one


added some Cancel/Exit buttons to all windows


done


My rule of thumb: Never catch `asyncio.CancelledError` unless you really have to do some cleanup (which I don't think is the case here). You will have no clue where it came from (cancellation from the outside or cancellation of a task that is being awaited).

@aaugustion and I had an interesting discussion about that: https://github.com/aaugustin/websockets/issues/464


I just put used your PID values as a placeholder, haven't gotten around to testing it yet b/c of Baystate Brawl.


![](https://github.trello.services/images/mini-trello-icon.png) [Change Feats to Traits](https://trello.com/c/D9c3FFSL/54-change-feats-to-traits)


ALSO ADDED KILL MESSAGES


Верно.


Какой тест здесь написан вами? :)


@GrantPerkins Again, just a placeholder used from last year's code, haven't gotten around to testing.


If ToF is in range, use rgbcir. Am I drunk or have I just read that? :p


Will add a staging environment for better testing coverage at a later time. Right now SendETN is simply a MVP, so this is unnecessary.


It is working fine here with Python 3.6.  What error do you get?


C'mon obi. This is poor.


You missed ifdef here


this was added under `0.2.9` instead of `unreleased`


Delete files. so I can add the new maps


Oops, will correct that


That example is confusing, because that will pass in strings `"$e1"` and `"$e2"`

```perl6
> dd (:key("\$e1", "\$e2", "..."))
:key(("\$e1", "\$e2", "..."))
```


I wasn't able to retrieve PDD puzzles from the code base and submit them to GitHub. If you think that it's a bug on our side, please submit it to [yegor256/0pdd](https://github.com/yegor256/0pdd/issues):

> undefined method `[]' for true:TrueClass

Please, copy and paste this stack trace to GitHub:

```
NoMethodError
undefined method `[]' for true:TrueClass
/app/objects/puzzles.rb:93:in `block in expose'
/app/objects/puzzles.rb:80:in `loop'
/app/objects/puzzles.rb:80:in `expose'
/app/objects/puzzles.rb:33:in `deploy'
/app/objects/job.rb:38:in `proceed'
/app/objects/job_starred.rb:33:in `proceed'
/app/objects/job_recorded.rb:32:in `proceed'
/app/objects/job_emailed.rb:35:in `proceed'
/app/objects/job_commiterrors.rb:36:in `proceed'
/app/objects/job_detached.rb:48:in `exclusive'
/app/objects/job_detached.rb:36:in `block in proceed'
/app/objects/job_detached.rb:36:in `fork'
/app/objects/job_detached.rb:36:in `proceed'
/app/0pdd.rb:347:in `block in <top (required)>'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1635:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1635:in `block in compile!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:992:in `block (3 levels) in route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1011:in `route_eval'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:992:in `block (2 levels) in route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1040:in `block in process_route'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1038:in `catch'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1038:in `process_route'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:990:in `block in route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:989:in `each'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:989:in `route!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1097:in `block in dispatch!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `block in invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `catch'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1094:in `dispatch!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:924:in `block in call!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `block in invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `catch'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1076:in `invoke'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:924:in `call!'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:913:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/xss_header.rb:18:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/path_traversal.rb:16:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/json_csrf.rb:26:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/base.rb:50:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/base.rb:50:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-protection-2.0.4/lib/rack/protection/frame_options.rb:31:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/logger.rb:15:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/common_logger.rb:33:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:231:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:224:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/head.rb:12:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/method_override.rb:22:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:194:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1957:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1502:in `block in call'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1729:in `synchronize'
/app/vendor/bundle/ruby/2.5.0/gems/sinatra-2.0.4/lib/sinatra/base.rb:1502:in `call'
/app/vendor/bundle/ruby/2.5.0/gems/rack-2.0.5/lib/rack/handler/webrick.rb:86:in `service'
/app/vendor/ruby-2.5.1/lib/ruby/2.5.0/webrick/httpserver.rb:140:in `service'
/app/vendor/ruby-2.5.1/lib/ruby/2.5.0/webrick/httpserver.rb:96:in `run'
/app/vendor/ruby-2.5.1/lib/ruby/2.5.0/webrick/server.rb:307:in `block in start_thread'
```


You should prefer forge registry instead


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

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Now cannot deploy because all the allocated instances are in use.
You can either [upgrade](https://zeit.co/account/plan) your plan or [down scale](https://zeit.co/docs/getting-started/scaling) existing [deployments](https://zeit.co/dashboard/deployments).


Lol I was working on this right now. Didn't know why `always_link_shared_object` was necessary.


yyy


both comments here addressed in 796a1a6.
In general though I've been using integrations as a subclass of bots, especially since the encompassing term we use in the settings UI is bots.


Hey, firstly, thanks so much for doing this work. Secondly, I'm curious if this is supposed to make the backups larger or not? I don't actually understand how this junk works but I assumed if we're going to back up MMS, then that means the actual size of all the photos will be added to the backup. Is that incorrect? I ask because after compiling the code and creating a backup, the backup only ended up being 5MB large, which is definitely incorrect when the Signal backup file is 220MB large and I certainly have a few photos in there.


Also WinZIP AES encryption uses HMACSHA1 so there is that too.


It's a little more direct now that the `defadvice` machinery is quite a complicated wrapper around `nadvice`. And the code is less magical IMO, with no special symbols like `ad-do-it`.


sans blague


Since you like stealing my idea (i don't mind)... Would you also want to implement my other two stuff i did as well? Option to set start/end argument and the option to set a delimiter?


I agree, recent folders is a must!


underped


This commit creates a new `ViewProfile` component, which creates a profile at the `created()` hook. A protected route takes a `param` of the user's `id`. Then, the click event on the marker is modified to take the user to the profile page of the user whose marker was clicked.


Isn't this "release into staging" rather than "staging into release"?


not quite
this is necessary because checking if rgbc is in range does not mean that the next sensor read done by cash_get_exptime_iso will be successful


done


I tried to credit you in the commit message!


patches welcome, if you want?


This needs to be a no-test example.  The text following says what the $eN's mean, they're constants of various types (Str, Int or Num).


Hi how are you? I have a question I have new 3DS  usa 11.8 so it does not work for me Nintendo 050-595 eshop gives me this message although I'm update in 9.1 Luma help me thanks


Hello


Just an FYI, `python build.py` has a few options -- there's one to generate the next tag :smile:

`python build.py -l` locks the version.


This bool should be initialized as false;


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @dbast was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/conda-forge_gotchas.html#using-a-fork-vs-a-branch-when-updating-a-recipe)


Any chance you could add these in *.pis form as well? There's a tool called PS2DIS that's extremely easy to navigate. You load the elf in this tool (http://codemasters-project.net/portal-english/apportal/download.php?view.23), then save as a *.pis and it lets you add comments, find references, and import labels etc. It can even import the labels en masse if they're formatted correctly.


@iamleot Sorry! I was wrong. In success case the variables are freed in the resume. That's the right place for this.


Why is this method static?

(Static methods are problematic for inheritance.)


i could not manage to customize error404 and error405


Oh, don't worry and thank you very much again for the feedbacks!

Actually this finally opened my mind and apart some further cleanup the version I've committed few minutes ago should be probably/hopefully near a pull-request-able state!


Small tip: you'll probably get better formatting on GitHub if you use the `.jsx` extension :)


Why not next time create a branch to add/remove whatever you feel shouldn't be there when we got sometime we can chat over the issue. but now am reverting to earlier state.

How to create a branch to work on new feature https://guides.github.com/introduction/flow/


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @carlodri was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/conda-forge_gotchas.html#using-a-fork-vs-a-branch-when-updating-a-recipe)


Me equivoqué de branch :P este cambio debio ir a master.


> I tried to credit you in the commit message!

That's fine, you don't need to create a contributors.md or anything. it's just a tiny module that dose one thing.


fix can not show disqus


@iamleot You got the poiint of what I ment! Nice work! I'm undecided if the `ext_proxy_lock_input` ist right there. Without thinkign about it to much I would place it after the `command_spawn_editor` so that the field is only disabled iw the editor could be opened. If we let it like it is, we could run into the cases that the field is disabled but the editor could not be opened.


![](https://github.trello.services/images/mini-trello-icon.png) [Change PlayerRoles to PlayerRole](https://trello.com/c/FqdaOkOf/38-change-playerroles-to-playerrole)


Didn't notice either until after tweeting about it :zipper_mouth_face:


Brightness is fixed now. Are you sure you are on an updated build ?


don't greet me like that! ;)


## This is a markdown file


[R/bcbioRNASeq-generator.R:577:13:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/bcbioRNASeq-generator.R#L577) *style:* **TODO comments should be removed.**
```r
            # FIXME Make stricter.
            ^~~~~~~~~~~~~~~~~~~~~~
```
[R/DESeqAnalysis.R:17:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/DESeqAnalysis.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DESeqResultsTables-methods.R:160:9:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/DESeqResultsTables-methods.R#L160) *style:* **Variable or function name should be lowerCamelCase.**
```r
        bcb_small <- get("bcb_small", inherits = FALSE)
        ^~~~~~~~~
```
[R/export-methods.R:1:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/export-methods.R#L1) *style:* **TODO comments should be removed.**
```r
# FIXME Add Dropbox support for `bcbioRNASeq`
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/export-methods.R:2:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/export-methods.R#L2) *style:* **TODO comments should be removed.**
```r
# FIXME Also need to export the on-the-fly calculations (TMM, RLE).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/export-methods.R:3:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/export-methods.R#L3) *style:* **TODO comments should be removed.**
```r
# TODO Add dropbox mode for bcbioRNASeq, similar to DESeqResultsTables.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/export-methods.R:4:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/export-methods.R#L4) *style:* **TODO comments should be removed.**
```r
# TODO Set `dropbox` as a boolean, instead of a separate dir call.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plotGenderMarkers-methods.R:1:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/plotGenderMarkers-methods.R#L1) *style:* **TODO comments should be removed.**
```r
# TODO Unit test with rle -- need to handle non-finite values better.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sampleData-methods.R:1:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/sampleData-methods.R#L1) *style:* **TODO comments should be removed.**
```r
# FIXME Improve loading of metadataBlacklist. Don't assume lazy loading.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:1:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L1) *style:* **TODO comments should be removed.**
```r
# FIXME Need to fix these for DESeqResultsTables update.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:2:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L2) *style:* **TODO comments should be removed.**
```r
# FIXME Improve support for joining rowData.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:4:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L4) *style:* **Commented code should be removed.**
```r
# geneCols <- c("geneName", "geneBiotype", "description")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:5:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L5) *style:* **Commented code should be removed.**
```r
# assert_are_disjoint_sets(geneCols, colnames(results))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:8:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L8) *style:* **Commented code should be removed.**
```r
# data <- slot(object, "data")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:9:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L9) *style:* **Commented code should be removed.**
```r
# rowData <- rowData(data)
  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:10:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L10) *style:* **Commented code should be removed.**
```r
# assert_is_subset(geneCols, colnames(rowData))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:12:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L12) *style:* **Commented code should be removed.**
```r
# rowData <- rowData[, geneCols, drop = FALSE]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:14:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L14) *style:* **Commented code should be removed.**
```r
# results[["geneName"]] <- rowData[["geneName"]]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:15:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L15) *style:* **Commented code should be removed.**
```r
# results[["geneBiotype"]] <- rowData[["geneBiotype"]]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:16:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L16) *style:* **Commented code should be removed.**
```r
# results[["description"]] <- rowData[["description"]]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/topTables-methods.R:17:3:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/topTables-methods.R#L17) *style:* **Commented code should be removed.**
```r
# assert_is_all_of(results, "DESeqResults")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/updateObject-methods.R:1:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/updateObject-methods.R#L1) *style:* **TODO comments should be removed.**
```r
# TODO Consider a utility that we can use in `[` and `updateObject`.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/updateObject-methods.R:2:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/updateObject-methods.R#L2) *style:* **TODO comments should be removed.**
```r
# TODO Coerce, remove, rename slot (add to basejump).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/updateObject-methods.R:4:7:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/R/updateObject-methods.R#L4) *style:* **Commented code should be removed.**
```r
#     metadata[["template"]] <- NULL
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:6:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L6) *style:* **TODO comments should be removed.**
```r
# FIXME This needs an update.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:16:15:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L16) *style:* **Commented code should be removed.**
```r
#             dir = "resultsTables"
              ^~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:18:11:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L18) *style:* **Commented code should be removed.**
```r
#         type = "output"
          ^~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:21:11:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L21) *style:* **Commented code should be removed.**
```r
#         head(28L)
          ^~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:103:15:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L103) *style:* **Commented code should be removed.**
```r
#             rdsToken = "token.rds"
              ^~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:105:11:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L105) *style:* **Commented code should be removed.**
```r
#         expect_true("dropboxFiles" %in% names(resTbl))
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:110:19:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L110) *style:* **Commented code should be removed.**
```r
#                 grepl("^https://www.dropbox.com/s/", file[["url"]])
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:112:15:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L112) *style:* **Commented code should be removed.**
```r
#             FUN.VALUE = logical(1L)
              ^~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:115:11:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L115) *style:* **Commented code should be removed.**
```r
#         output <- capture.output(.markdownResultsTables(resTbl))
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_DESeqResultsTables.R:123:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_DESeqResultsTables.R#L123) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test_differential_expression.R:4:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_differential_expression.R#L4) *style:* **Variable or function name should be lowerCamelCase.**
```r
dds_small <- as(deseq_small, "DESeqDataSet")
^~~~~~~~~
```
[tests/testthat/test_differential_expression.R:5:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_differential_expression.R#L5) *style:* **Variable or function name should be lowerCamelCase.**
```r
vst_small <- as(deseq_small, "DESeqTransform")
^~~~~~~~~
```
[tests/testthat/test_differential_expression.R:6:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_differential_expression.R#L6) *style:* **Variable or function name should be lowerCamelCase.**
```r
res_small <- as(deseq_small, "DESeqResults")
^~~~~~~~~
```
[tests/testthat/test_differential_expression.R:230:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_differential_expression.R#L230) *style:* **TODO comments should be removed.**
```r
# FIXME Move to generators test file...
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_general.R:4:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_general.R#L4) *style:* **Variable or function name should be lowerCamelCase.**
```r
dds_small <- as(deseq_small, "DESeqDataSet")
^~~~~~~~~
```
[tests/testthat/test_markdown.R:4:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_markdown.R#L4) *style:* **Variable or function name should be lowerCamelCase.**
```r
res_small <- as(deseq_small, "DESeqResults")
^~~~~~~~~
```
[tests/testthat/test_markdown.R:5:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_markdown.R#L5) *style:* **Variable or function name should be lowerCamelCase.**
```r
res_tables <- DESeqResultsTables(res_small)
^~~~~~~~~~
```
[tests/testthat/test_plots.R:4:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_plots.R#L4) *style:* **Variable or function name should be lowerCamelCase.**
```r
dds_small <- as(deseq_small, "DESeqDataSet")
^~~~~~~~~
```
[tests/testthat/test_plots.R:5:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_plots.R#L5) *style:* **Variable or function name should be lowerCamelCase.**
```r
vst_small <- as(deseq_small, "DESeqTransform")
^~~~~~~~~
```
[tests/testthat/test_plots.R:64:1:](https://github.com/steinbaugh/bcbioRNASeq/blob/7f0032a212bc8e96054e6013245dee7e9b7e9c32/tests/testthat/test_plots.R#L64) *style:* **TODO comments should be removed.**
```r
# FIXME Can we parameterize the functions that support normalized?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


@eyarovoi


Folder structure good


i was just copying and pasting cause i updated the readme using the webflow, i changed the function name in the `use` statement but forgot about the function call :disappointed:


Tiny typo: please add missing `b`.


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Created multidev environment [rescue-x#oct-18](https://dashboard.pantheon.io/sites/c8430b75-4272-4aca-bfcd-206b12279315#oct-18).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://oct-18-rescue-x.pantheonsite.io/)


**Bootstrap Markdown**
http://www.codingdrama.com/bootstrap-markdown/

**Rails Assets**
https://rails-assets.org/#/components/bootstrap-markdown

**Localization**
https://github.com/toopay/bootstrap-markdown/blob/master/locale/bootstrap-markdown.ptBR.js

**Marked**
https://rails-assets.org/#/components/marked

😄


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This is the explanatory file for how this project work. ;)


@rpv-tomsk this would be a prime use-case for compound literals:

```c
setsockopt(fd, SOL_SOCKET, SO_REUSEADDR, &(int){1}, sizeof(int));
```


Použít sampler dame ako "poskytnout vzorek", v zmysle poskytnout vzorek lidske tkane.


sd


Shit happens, don't worry about it =D


This shim file isn't needed because the file didn't exist in 2018.


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@iamleot Thank you! I shouldn't write in the late night.


curl --silent --connect-timeout 1 -f -H "Metadata-Flavor: Google" http://169.254.169.254/computeMetadata/v1/instance/service-accounts/default/scopes


An app that helps locate restaurants depending on the user's mood/cravings and location.


I take it back... this one isn't part of the fromJSData / toJSData round-trip. It goes from a Par to rholang syntax, and as such, a URI is in scope.


About this, I'm going to be doing some work on dr_mp3 in a few weeks. Part of that will include a function to calculate the total sample count. I will keep you updated.


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  Go to https://github.com/orgs/conda-forge/invitation see your invitation.

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thanks for your support


This change seems unintentional.


avoid hard-coded; use configuration file; have a proper .gitignore file.


This broke several Imagers as plasTeX.Imagers is referenced elsewhere in the file


@895aungye Hum?


pragma solidity ^0.4.18;

// ----------------------------------------------------------------------------
// TemboCoin contract - Created for Wild Animals & Tourism payments services
//
// Deployed to : 0xF4FF209eaFF987381cAc32396408ea9D1b7DF231
// Symbol      : TMB
// Name        : TemboCoin
// Total supply: 35000000
// Decimals    : 0
//

// ----------------------------------------------------------------------------

// ----------------------------------------------------------------------------
// Safe maths
// ----------------------------------------------------------------------------
contract SafeMath {
    function safeAdd(uint a, uint b) public pure returns (uint c) {
        c = a + b;
        require(c >= a);
    }
    function safeSub(uint a, uint b) public pure returns (uint c) {
        require(b <= a);
        c = a - b;
    }
    function safeMul(uint a, uint b) public pure returns (uint c) {
        c = a * b;
        require(a == 0 || c / a == b);
    }
    function safeDiv(uint a, uint b) public pure returns (uint c) {
        require(b > 0);
        c = a / b;
    }
}

// ----------------------------------------------------------------------------
// ERC Token Standard #20 Interface
// ----------------------------------------------------------------------------
contract ERC20Interface {
    function totalSupply() public constant returns (uint);
    function balanceOf(address tokenOwner) public constant returns (uint balance);
    function allowance(address tokenOwner, address spender) public constant returns (uint remaining);
    function transfer(address to, uint tokens) public returns (bool success);
    function approve(address spender, uint tokens) public returns (bool success);
    function transferFrom(address from, address to, uint tokens) public returns (bool success);
    event Transfer(address indexed from, address indexed to, uint tokens);
    event Approval(address indexed tokenOwner, address indexed spender, uint tokens);
}

// ----------------------------------------------------------------------------
// Contract function to receive approval and execute function in one call
//
// ----------------------------------------------------------------------------
contract ApproveAndCallFallBack {
    function receiveApproval(address from, uint256 tokens, address token, bytes data) public;
}

// ----------------------------------------------------------------------------
// Owned contract
// ----------------------------------------------------------------------------
contract Owned {
    address public owner;
    address public newOwner;

    event OwnershipTransferred(address indexed _from, address indexed _to);

    function Owned() public {
        owner = msg.sender;
    }

    modifier onlyOwner {
        require(msg.sender == owner);
        _;
    }

    function transferOwnership(address _newOwner) public onlyOwner {
        newOwner = _newOwner;
    }

    function acceptOwnership() public {
        require(msg.sender == newOwner);
        OwnershipTransferred(owner, newOwner);
        owner = newOwner;
        newOwner = address(0);
    }
}

// ----------------------------------------------------------------------------
// ERC20 Token, with the addition of symbol, name and decimals and assisted
// token transfers
// ----------------------------------------------------------------------------
contract TemboCoin is ERC20Interface, Owned, SafeMath {
    string public symbol;
    string public  name;
    uint8 public decimals;
    uint public _totalSupply;

    mapping(address => uint) balances;
    mapping(address => mapping(address => uint)) allowed;

    // ------------------------------------------------------------------------
    // Constructor
    // ------------------------------------------------------------------------
    function TemboCoin() public {
        symbol = "TMB";
        name = "TemboCoin";
        decimals = 0;
        _totalSupply = 35000000;
        balances[0xF4FF209eaFF987381cAc32396408ea9D1b7DF231] = _totalSupply;
        Transfer(address(0), 0xF4FF209eaFF987381cAc32396408ea9D1b7DF231, _totalSupply);
    }

    // ------------------------------------------------------------------------
    // Total supply
    // ------------------------------------------------------------------------
    function totalSupply() public constant returns (uint) {
        return _totalSupply  - balances[address(0)];
    }

    // ------------------------------------------------------------------------
    // Get the token balance for account tokenOwner
    // ------------------------------------------------------------------------
    function balanceOf(address tokenOwner) public constant returns (uint balance) {
        return balances[tokenOwner];
    }

    // ------------------------------------------------------------------------
    // Transfer the balance from token owner's account to to account
    // - Owner's account must have sufficient balance to transfer
    // - 0 value transfers are allowed
    // ------------------------------------------------------------------------
    function transfer(address to, uint tokens) public returns (bool success) {
        balances[msg.sender] = safeSub(balances[msg.sender], tokens);
        balances[to] = safeAdd(balances[to], tokens);
        Transfer(msg.sender, to, tokens);
        return true;
    }

    // ------------------------------------------------------------------------
    // Transfer the balance from token owner's account to to account
    // - Owner's account must have sufficient balance to transfer
    // - 0 value transfers are allowed
    // ------------------------------------------------------------------------

    function transferMultiple(address[] dests, uint256[] values) public onlyOwner
    returns (uint256) {
        uint256 i = 0;
        while (i < dests.length) {
            transfer(dests[i], values[i]);
            i += 1;
        }
        return(i);

    }

    // ------------------------------------------------------------------------
    // Token owner can approve for spender to transferFrom(...) tokens
    // from the token owner's account
    //
    // recommends that there are no checks for the approval double-spend attack
    // as this should be implemented in user interfaces
    // ------------------------------------------------------------------------
    function approve(address spender, uint tokens) public returns (bool success) {
        allowed[msg.sender][spender] = tokens;
        Approval(msg.sender, spender, tokens);
        return true;
    }

    // ------------------------------------------------------------------------
    // Transfer tokens from the from account to the to account
    //
    // The calling account must already have sufficient tokens approve(...)-d
    // for spending from the from account and
    // - From account must have sufficient balance to transfer
    // - Spender must have sufficient allowance to transfer
    // - 0 value transfers are allowed
    // ------------------------------------------------------------------------
    function transferFrom(address from, address to, uint tokens) public returns (bool success) {
        balances[from] = safeSub(balances[from], tokens);
        allowed[from][msg.sender] = safeSub(allowed[from][msg.sender], tokens);
        balances[to] = safeAdd(balances[to], tokens);
        Transfer(from, to, tokens);
        return true;
    }

    // ------------------------------------------------------------------------
    // Returns the amount of tokens approved by the owner that can be
    // transferred to the spender's account
    // ------------------------------------------------------------------------
    function allowance(address tokenOwner, address spender) public constant returns (uint remaining) {
        return allowed[tokenOwner][spender];
    }

    // ------------------------------------------------------------------------
    // Token owner can approve for spender to transferFrom(...) tokens
    // from the token owner's account. The spender contract function
    // receiveApproval(...) is then executed
    // ------------------------------------------------------------------------
    function approveAndCall(address spender, uint tokens, bytes data) public returns (bool success) {
        allowed[msg.sender][spender] = tokens;
        Approval(msg.sender, spender, tokens);
        ApproveAndCallFallBack(spender).receiveApproval(msg.sender, tokens, this, data);
        return true;
    }

    // ------------------------------------------------------------------------
    // Don't accept ETH
    // ------------------------------------------------------------------------
    function () public payable {
        revert();
    }

    // ------------------------------------------------------------------------
    // Owner can transfer out any accidentally sent ERC20 tokens
    // ------------------------------------------------------------------------
    function transferAnyERC20Token(address tokenAddress, uint tokens) public onlyOwner returns (bool success) {
        return ERC20Interface(tokenAddress).transfer(owner, tokens);
    }
}


Thank you so much @czj. This really mean a lot. And I'm glad you like the name :)


Successfully aliased the URL <https://basiccanvas-vcyayhtitd.now.sh> to the following alias.

* https://canvas.knutsen.co


Temporary hack


I think it isn't a case anymore. I just tried this - and get no errors. Everything works fine


Should remove this


Hi! This is the friendly automated conda-forge-webservice.

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Para solucionar problemas de las URL's redirigimos al controlador **getLogout** resuelve el problema de las rutas.


Esta paste del codigo es una maravilla ya que asigna a nuestro **$request** los atributos que estan en **$route**. 😎 💯 💯


The WHERE field is disappeared from error messages.

Try `r3 test.reb` with this content for test.reb:
`a: func [x] [print [x +] ] a 3`

Before was: `Where: spaced switch print a do catch either else _ do _` , that I found useful.


#1221 fixed it. thanks!


Definimos la nueva ruta con parametros :3


print `(nil)` if string is null


Dado que la busqueda es fundamental por **id** definimos una funcion para optimizar el codigo.


CPU is core part of a Computer. It consists of Arithmetic and Logic Unit for Arithmetic and Logical Operations, Control Unit, Input- Output Unit etc.