[R/clock_models_to_xml_operators.R:10:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/clock_models_to_xml_operators.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/clock_models_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/clock_models_to_xml_state.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/clock_models_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:186:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L186) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L235) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:237:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L237) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:296:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L296) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:298:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L298) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:332:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L332) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:334:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L334) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:383:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L383) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:385:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_distr.R#L385) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:175:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input_loggers.R#L175) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```
[R/is_distr.R:23:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L23) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  if (is_beta_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/is_distr.R:24:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L24) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  if (is_exp_distr(x)) return(TRUE)
      ^~~~~~~~~~~~
```
[R/is_distr.R:25:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L25) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  if (is_gamma_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/is_distr.R:26:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L26) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  if (is_inv_gamma_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:27:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L27) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  if (is_laplace_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:28:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L28) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  if (is_log_normal_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:29:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L29) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  if (is_normal_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~
```
[R/is_distr.R:30:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L30) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  if (is_one_div_x_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:31:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L31) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  if (is_poisson_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:32:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L32) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  if (is_uniform_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:53:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L53) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:55:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L55) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:76:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L76) *warning:* **no visible global function definition for ‘is_mean_param’**
```r
  if (!is_mean_param(x$mean)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:97:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L97) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:99:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L99) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:120:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L120) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:122:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L122) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:146:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L146) *warning:* **no visible global function definition for ‘is_mu_param’**
```r
  if (!is_mu_param(x$mu)) return(FALSE)
       ^~~~~~~~~~~
```
[R/is_distr.R:148:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L148) *warning:* **no visible global function definition for ‘is_scale_param’**
```r
  if (!is_scale_param(x$scale)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:181:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L181) *warning:* **no visible global function definition for ‘is_m_param’**
```r
  if (!is_m_param(x$m)) return(FALSE)
       ^~~~~~~~~~
```
[R/is_distr.R:183:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L183) *warning:* **no visible global function definition for ‘is_s_param’**
```r
  if (!is_s_param(x$s)) return(FALSE)
       ^~~~~~~~~~
```
[R/is_distr.R:204:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L204) *warning:* **no visible global function definition for ‘is_mean_param’**
```r
  if (!is_mean_param(x$mean)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:206:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L206) *warning:* **no visible global function definition for ‘is_sigma_param’**
```r
  if (!is_sigma_param(x$sigma)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:244:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_distr.R#L244) *warning:* **no visible global function definition for ‘is_lambda_param’**
```r
  if (!is_lambda_param(x$lambda)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/is_freq_equilibrium_name.R:17:13:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_freq_equilibrium_name.R#L17) *warning:* **no visible global function definition for ‘get_freq_equilibrium_names’**
```r
  name %in% get_freq_equilibrium_names()
            ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_index_of_first_shared_clock_model.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_index_of_first_shared_clock_model.R#L12) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/is_index_of_non_first_shared_clock_model.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_index_of_non_first_shared_clock_model.R#L12) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:43:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_clock_model.R#L43) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L11) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_init_distr.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L33) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(x))
                   ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:47:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L47) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(x))
                 ^~~~~~~~~~~~~
```
[R/is_init_distr.R:60:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L60) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(x))
                 ^~~~~~~~~~~~
```
[R/is_init_distr.R:73:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L73) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(x))
                 ^~~~~~~~~~~~~~
```
[R/is_init_distr.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L86) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:99:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L99) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:112:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L112) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(x))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L125) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(x))
                 ^~~~~~~~~~~~~~~
```
[R/is_init_distr.R:138:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L138) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:151:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L151) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:164:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_distr.R#L164) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_gamma_site_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_gamma_site_model.R#L11) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  if (!is_gamma_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~
```
[R/is_init_mrca_prior.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_mrca_prior.R#L10) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  if (!is_mrca_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_mrca_prior.R:15:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_mrca_prior.R#L15) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (is_distr(x$mrca_distr) && !is_init_distr(x$mrca_distr)) return(FALSE)
      ^~~~~~~~
```
[R/is_init_mrca_prior.R:15:34:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_mrca_prior.R#L15) *warning:* **no visible global function definition for ‘is_init_distr’**
```r
  if (is_distr(x$mrca_distr) && !is_init_distr(x$mrca_distr)) return(FALSE)
                                 ^~~~~~~~~~~~~
```
[R/is_init_site_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_site_model.R#L11) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_site_model.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_site_model.R#L19) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:71:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_site_model.R#L71) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:91:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_site_model.R#L91) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_site_model.R#L111) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_tree_prior.R#L10) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
  if (!is_tree_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:20:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_tree_prior.R#L20) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:34:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_tree_prior.R#L34) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:50:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_tree_prior.R#L50) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:80:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_tree_prior.R#L80) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:95:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_init_tree_prior.R#L95) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_mcmc.R:34:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_mcmc.R#L34) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(x)) return(FALSE)
       ^~~~~~~
```
[R/is_mrca_prior_with_distr.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_mrca_prior_with_distr.R#L11) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (is_one_na(x)) return(FALSE)
      ^~~~~~~~~
```
[R/is_mrca_prior_with_distr.R:12:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_mrca_prior_with_distr.R#L12) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  if (!is_mrca_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_mrca_prior_with_distr.R:13:3:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_mrca_prior_with_distr.R#L13) *warning:* **no visible global function definition for ‘is_distr’**
```r
  is_distr(x$mrca_distr)
  ^~~~~~~~
```
[R/is_mrca_prior.R:18:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_mrca_prior.R#L18) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$mrca_distr) && !is.na(x$mrca_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:30:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L30) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:45:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L45) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:60:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L60) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:79:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L79) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:102:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L102) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:124:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L124) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:139:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L139) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:153:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L153) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:172:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L172) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:191:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L191) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:209:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L209) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:228:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L228) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:247:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L247) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:266:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L266) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:285:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L285) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:300:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L300) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:315:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L315) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_param.R:330:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_param.R#L330) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_site_model.R:21:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L21) *warning:* **no visible global function definition for ‘is_site_model_name’**
```r
  if (!is_site_model_name(x$name)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:24:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L24) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  if (!is_gamma_site_model(x$gamma_site_model)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:40:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L40) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_site_model.R:54:10:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L54) *warning:* **no visible global function definition for ‘is_distr’**
```r
    if (!is_distr(expected_distr)) return(FALSE)
         ^~~~~~~~
```
[R/is_site_model.R:60:10:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L60) *warning:* **no visible global function definition for ‘is_param’**
```r
    if (!is_param(expected_param)) return(FALSE)
         ^~~~~~~~
```
[R/is_site_model.R:63:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L63) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:79:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L79) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_site_model.R:83:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L83) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$kappa_prior_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_site_model.R:85:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L85) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:100:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L100) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_site_model.R:120:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L120) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_site_model.R:122:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L122) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$kappa_1_prior_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_site_model.R:124:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L124) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$kappa_2_prior_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_site_model.R:126:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L126) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$kappa_1_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_site_model.R:128:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L128) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$kappa_2_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_site_model.R:130:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_site_model.R#L130) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_tree_prior.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/is_tree_prior.R#L11) *warning:* **no visible global function definition for ‘is_tree_prior_name’**
```r
  if (!is_tree_prior_name(x$name)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~
```
[R/mcmc_to_xml_run.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mcmc_to_xml_run.R#L13) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/mcmc_to_xml_run.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mcmc_to_xml_run.R#L33) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/mcmc_to_xml_run.R:62:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mcmc_to_xml_run.R#L62) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/mrca_prior_to_xml_lh_distr.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_lh_distr.R#L20) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/mrca_prior_to_xml_prior_distr.R:24:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_prior_distr.R#L24) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/mrca_prior_to_xml_prior_distr.R:73:21:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_prior_distr.R#L73) *warning:* **no visible global function definition for ‘indent’, Did you mean 'infert'?**
```r
    text <- c(text, indent(distr_to_xml(mrca_prior$mrca_distr), n_spaces = 4))
                    ^~~~~~
```
[R/mrca_prior_to_xml_prior_distr.R:73:28:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_prior_distr.R#L73) *warning:* **no visible global function definition for ‘distr_to_xml’**
```r
    text <- c(text, indent(distr_to_xml(mrca_prior$mrca_distr), n_spaces = 4))
                           ^~~~~~~~~~~~
```
[R/mrca_prior_to_xml_state.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_state.R#L12) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/mrca_prior_to_xml_taxonset.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_taxonset.R#L20) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/mrca_prior_to_xml_taxonset.R:29:11:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_taxonset.R#L29) *warning:* **no visible global function definition for ‘indent’, Did you mean 'infert'?**
```r
  text <- indent(text, n_spaces = 4)
          ^~~~~~
```
[R/mrca_prior_to_xml_tracelog.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/mrca_prior_to_xml_tracelog.R#L17) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/parameter_to_xml.R:59:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/parameter_to_xml.R#L59) *warning:* **no visible global function definition for ‘is_sigma_param’**
```r
    testit::assert(is_sigma_param(parameter))
                   ^~~~~~~~~~~~~~
```
[R/phylo_to_xml_state.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/phylo_to_xml_state.R#L16) *warning:* **no visible global function definition for ‘is_phylo’**
```r
  testit::assert(is_phylo(phylo))
                 ^~~~~~~~
```
[R/site_model_to_xml_tracelog.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/site_model_to_xml_tracelog.R#L14) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/site_models_to_xml_operators.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/site_models_to_xml_operators.R#L7) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/site_models_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/site_models_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/site_models_to_xml_state.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/site_models_to_xml_state.R#L15) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_operators.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/tree_prior_to_xml_operators.R#L16) *warning:* **no visible global function definition for ‘get_operator_id_pre’**
```r
  operator_id_pre <- get_operator_id_pre(tree_prior)
                     ^~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_operators.R:49:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/tree_prior_to_xml_operators.R#L49) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:18:18:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/tree_prior_to_xml_prior_distr.R#L18) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
  testit::assert(is_tree_prior(tree_prior))
                 ^~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:29:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/tree_prior_to_xml_prior_distr.R#L29) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_state.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/21754d3e07d37d3baa0270df2d6309edf84a43ac/R/tree_prior_to_xml_state.R#L41) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```


LYRIC命令で、空白の命令が使えなくなった模様。


thanks I see these patches


This function still always return true. When will it return false?


everything look good?


FixDocTarget (Myoldmopar) - x86_64-Linux-Ubuntu-18.04-gcc-7.3-IntegrationCoverage-Debug: OK (2411 of 2411 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-72.27%25-green.png)


Usually we return false if there is error. Return true usually means everything is ok.


You already checked this in the loop, why do you need to check outside the loop?


FixDocTarget (Myoldmopar) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (2 of 2 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Worked for me! Thank you!


по предпоследнему комментарию мне Кирилл сказал, что он уже сегодня его написал, так что ты еще не видел этой рекомендации видимо )
в любом случае она хорошая, попробуй в этом направлении


what is this?


Try not to use global variables. You should pass values to functions.


Successfully aliased the URL <https://portfolio-site-czktw8z8x.now.sh> to the following alias.

* https://edwin-cloud.now.sh


У вас всегда будет возвращаться на первую новость или новость с id = 1. Верно?


>
>
> Thank you for all the effort nerdyrasa.
>
> I've checked lecture 55 several times and added the Movie = new Movie(), into the Movies New action method.
>
> ```
>         //GET: Movies/New
>         public ViewResult New()
>          {
>              var genres = _context.Genres.ToList();
>
>             var viewModel = new MovieFormViewModel
>             {
>                 Movie = new Movie(),
>                 Genres = genres
>              };
>
>              return View("MovieForm", viewModel);
>          }
> ```
>
> However I am still getting the same error:
>
> `Cannot insert the value NULL into column 'Id', table 'aspnet-Vidly-20161112123153.dbo.Movies'; column does not allow nulls. INSERT fails. The statement has been terminated.`
>
> I am really suspicious of this IDENTITY (1, 1) missing in my Movies table since my app is breaking on SQL INSERT command and if I understand this correctly this is where auto increment (IDENTITY) should take place and add value to Id.
>
> I am surfing the web and cannot come up with a solution on how to add in the IDENTITY. [Key] isn't helping either :/
>
> no erros on update-database whatsoever

U can manually update the table using
[Id]   INT  IDENTITY (1, 1) NOT NULL, in visual studio server explorer
then problem solved for me.


You have 3 offer codes but you only loop to 2.


when registration fail?


You are not in C++ world to ignore 3rd-party libraries just because they are 3rd-party.


but how to go back to main page with return false?


Now could not deploy this pull request since the `now.json` file is empty.
It should be a valid JSON file.

    For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.