[R/are_mrca_taxa_names_in_fastas.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/are_mrca_taxa_names_in_fastas.R#L11) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/are_mrca_taxa_non_intersecting.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_operators.R#L12) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:19:22:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_operators.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_operators.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_operators.R#L34) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:37:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_operators.R#L37) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_prior_distr.R#L20) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:30:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_prior_distr.R#L30) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_prior_distr.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:49:22:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_prior_distr.R#L49) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(clock_model$id))
                 ^~~~~
```
[R/clock_model_to_xml_state.R:26:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_state.R#L26) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_tracelog.R#L17) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_tracelog.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_tracelog.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_tracelog.R#L34) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_treelogger.R#L9) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:24:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_model_to_xml_treelogger.R#L24) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_operators.R:10:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_models_to_xml_operators.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_models_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_models_to_xml_state.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_models_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:23:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/clock_models_to_xml_tracelog.R#L23) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/create_beast2_input_1_12.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_1_12.R#L39) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
    testit::assert(are_initial_phylogenies(initial_phylogenies))
                   ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:182:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L182) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:186:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L186) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L235) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:237:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L237) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:296:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L296) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:298:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L298) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:332:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L332) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:334:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L334) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:383:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L383) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:385:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L385) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:446:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L446) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:448:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_distr.R#L448) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:175:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input_loggers.R#L175) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_beast2_input.R:140:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_beast2_input.R#L140) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:54:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L54) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(distr))
                 ^~~~~~~~~~~~~
```
[R/distr_to_xml.R:56:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L56) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:84:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L84) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(distr))
                 ^~~~~~~~~~~~
```
[R/distr_to_xml.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L86) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:109:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L109) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(distr))
                 ^~~~~~~~~~~~~~
```
[R/distr_to_xml.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L111) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:140:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L140) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:142:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L142) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:171:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L171) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:173:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L173) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:201:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L201) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(distr))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:203:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L203) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:233:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L233) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(distr))
                 ^~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L235) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:264:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L264) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:266:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L266) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:282:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L282) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:284:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L284) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:308:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L308) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:310:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/distr_to_xml.R#L310) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/gamma_site_model_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/gamma_site_model_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/gamma_site_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/gamma_site_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_state.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/gamma_site_model_to_xml_state.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_model_name.R:17:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_clock_model_name.R#L17) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/init_clock_models.R:45:22:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
      testit::assert(is_strict_clock_model(clock_model))
                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:78:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L78) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:85:26:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L85) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:92:26:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L92) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_mrca_priors.R#L14) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  if (is_rln_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:12:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_clock_model.R#L12) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  if (is_strict_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```
[R/is_distr.R:23:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L23) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  if (is_beta_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/is_distr.R:24:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L24) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  if (is_exp_distr(x)) return(TRUE)
      ^~~~~~~~~~~~
```
[R/is_distr.R:25:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L25) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  if (is_gamma_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/is_distr.R:26:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L26) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  if (is_inv_gamma_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:27:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L27) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  if (is_laplace_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:28:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L28) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  if (is_log_normal_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:29:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L29) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  if (is_normal_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~
```
[R/is_distr.R:30:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L30) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  if (is_one_div_x_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:31:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L31) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  if (is_poisson_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:32:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L32) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  if (is_uniform_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:53:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L53) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:55:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L55) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:76:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L76) *warning:* **no visible global function definition for ‘is_mean_param’**
```r
  if (!is_mean_param(x$mean)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:97:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L97) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:99:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L99) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:120:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L120) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:122:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L122) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:146:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L146) *warning:* **no visible global function definition for ‘is_mu_param’**
```r
  if (!is_mu_param(x$mu)) return(FALSE)
       ^~~~~~~~~~~
```
[R/is_distr.R:148:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L148) *warning:* **no visible global function definition for ‘is_scale_param’**
```r
  if (!is_scale_param(x$scale)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:181:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L181) *warning:* **no visible global function definition for ‘is_m_param’**
```r
  if (!is_m_param(x$m)) return(FALSE)
       ^~~~~~~~~~
```
[R/is_distr.R:183:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L183) *warning:* **no visible global function definition for ‘is_s_param’**
```r
  if (!is_s_param(x$s)) return(FALSE)
       ^~~~~~~~~~
```
[R/is_distr.R:204:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L204) *warning:* **no visible global function definition for ‘is_mean_param’**
```r
  if (!is_mean_param(x$mean)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:206:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L206) *warning:* **no visible global function definition for ‘is_sigma_param’**
```r
  if (!is_sigma_param(x$sigma)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:244:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_distr.R#L244) *warning:* **no visible global function definition for ‘is_lambda_param’**
```r
  if (!is_lambda_param(x$lambda)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/is_freq_equilibrium_name.R:17:13:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_freq_equilibrium_name.R#L17) *warning:* **no visible global function definition for ‘get_freq_equilibrium_names’**
```r
  name %in% get_freq_equilibrium_names()
            ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_index_of_first_shared_clock_model.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_index_of_first_shared_clock_model.R#L12) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/is_index_of_non_first_shared_clock_model.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_index_of_non_first_shared_clock_model.R#L12) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  if (!is_clock_model(x)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:15:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_clock_model.R#L15) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_clock_model.R#L29) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:43:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_clock_model.R#L43) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L11) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_init_distr.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L33) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(x))
                   ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:47:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L47) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(x))
                 ^~~~~~~~~~~~~
```
[R/is_init_distr.R:60:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L60) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(x))
                 ^~~~~~~~~~~~
```
[R/is_init_distr.R:73:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L73) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(x))
                 ^~~~~~~~~~~~~~
```
[R/is_init_distr.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L86) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:99:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L99) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:112:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L112) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(x))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L125) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(x))
                 ^~~~~~~~~~~~~~~
```
[R/is_init_distr.R:138:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L138) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:151:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L151) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:164:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_distr.R#L164) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_gamma_site_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_gamma_site_model.R#L11) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  if (!is_gamma_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~
```
[R/is_init_mrca_prior.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_mrca_prior.R#L10) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  if (!is_mrca_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_mrca_prior.R:15:7:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_mrca_prior.R#L15) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (is_distr(x$mrca_distr) && !is_init_distr(x$mrca_distr)) return(FALSE)
      ^~~~~~~~
```
[R/is_init_mrca_prior.R:15:34:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_mrca_prior.R#L15) *warning:* **no visible global function definition for ‘is_init_distr’**
```r
  if (is_distr(x$mrca_distr) && !is_init_distr(x$mrca_distr)) return(FALSE)
                                 ^~~~~~~~~~~~~
```
[R/is_init_site_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_site_model.R#L11) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_site_model.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_site_model.R#L19) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:71:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_site_model.R#L71) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:91:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_site_model.R#L91) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_site_model.R#L111) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_tree_prior.R#L10) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
  if (!is_tree_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:20:20:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_tree_prior.R#L20) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:34:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_tree_prior.R#L34) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:50:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_tree_prior.R#L50) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:80:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_tree_prior.R#L80) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:95:18:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_init_tree_prior.R#L95) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_mcmc.R:34:8:](https://github.com/richelbilderbeek/beautier/blob/eec98164553221cb7fc705848293a105610997d9/R/is_mcmc.R#L34) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(x)) return(FALSE)
       ^~~~~~~
```


I have two question:
1.What kind of organizational structure is the best organizational structure?
2.How to build a good company organization structure?

我有两个问题:
1.什么类型的公司组织架构是最好的组织架构?
2.如何构建一个好的组织架构?


I copied the setup.py from one of our other projects. As far as I recall, either PyPI or twine had issues with markdown back then, can try again.


그렇면 이거는 클라이언트 몃개 동시처리 를 원하는거네요


If I didnt put them inside a loop, it will read only 1 group of data (1 stored_username and 1 stored_password)


wow, I wasn't aware of that, nice!


Old Hmwrk deleted


[The data type “`sig_atomic_t`” should be used](https://wiki.sei.cmu.edu/confluence/display/c/SIG31-C.+Do+not+access+shared+objects+in+signal+handlers "Description for the usage of sig_atomic_t") for this variable, [shouldn't it](https://bugs.kde.org/show_bug.cgi?id=317496#c2 "Fix signal handler")?


this is needed? i don’t we do bytes anywhere


you are really good at python packaging :D isn't there a linter?


improve it, I believe in you :0


fixes #5


有新版本了！冲压！


Я тут тоже виселицу писал, для челленжа.
Если интересно: https://github.com/pybites/challenges/pull/425


Hi @sachinbijadi.
If you want to just view the reverse relationship Aras has published code examples.
This code was to create a reverse relationship, I.e. From one document instance to many parts.
As for this code, I'm not sure it'll still work, it uses a bit of client side code. I haven't used aras in a few years, and I'm not upto date on their client side api.


We do in `SringMixin`. The implementation is a bit different, since it goes unicode -> bytes.

For reference, I think the way ExtensionArray does things is more "future friendly".

- implementation on `__repr__`. This returns str, which is unicode on Py3 and bytes on Py2.
- `__unicode__` and `__str__` call `__repr__` and encode / decode as needed.


I understand that. My point is that instead of [checking for `Set`](https://github.com/xekoukou/agda-ocaml/blob/762b8ffee65558f5c08dd8a8f7b68f822fedd161/src/full/Agda/Compiler/Malfunction/Compiler.hs#L638),
you could check whether the type is erased (which would be a strict superset of `Set`).


다수의 클라이언트와 소통하는 게 채팅 서비스에선 가장 기본이 되죠.


Can such return value ignorance be questionable?


please add a `switch` statement and print `no isis network point-to-point` when the network type is broadcast (this is for `show configuration ... with-defaults`.


lol look at this guy commenting on github like as if I read my emails more than once a week, you're quite right, but how do we do it? right now the line is drawn using centre points coming from `animal.dog.center` and `animal.cat.center`.


а шифр цезаря на кодварс писал. Только не совсем его, а разновидность: rot13


thank you for the 2 talks in 2 days !

I was watching the BDX I/O video: https://youtu.be/1EKBxE6H-IE?t=28033 7:47:13

and found the syntax error in IntelliJ very irritating

actually you can provide a name for the JS function (which will be ignored) like this:

```js
function fn() {

}
```

I will add this to the documentation


this approach can be inefficient in comparison to bind(this)


thanks @jef-n totally missed that.


Když používáš `position: absolute`, tak ta pozice se počítá od nejbližšího rodičovského prvku, který má nastevné `position: relative` - tys to nikde nenastavila, takže se to počítá od levého horního rohu stránky. To by byl trochu problém, když bys to portfolio třeba posunula na střed stránky - všechno by se posunulo, ale toho logo by zůstalo na stejném místě, protože jeho pozice se počítá vůči celé stránce. Ideálním řešením by bylo nastavit `position: relative` k `.hlavicka`, protože pak se pozice toho loga bude počítat vůči pozici té hlavičky - takže když bys to celé posunula na střed stránky, posune se i hlavička  v důsledku toho i to logo.


Payment to GitHub account


:+1: :1st_place_medal:


isdigit кстати не совсем адекватно работает (по-крайней мере, не так, как большинство ожидает).
`'²'.isdigit()` вернет True. Лучше юзать str.isnumeric или str.isdecimal (я честно не очень понимаю, в чем между ними концептуальная разница)


:+1: :1st_place_medal:  Super :-)


Инфа в формате [название/белки/жиры/углеводы/калории], в рассчете на 100г


Your program should be resilient enough to keep running. Don't just stop the program whenever an error occurs. What should you do when file cannot be opened?


:+1: :1st_place_medal: Super


https://www.codewars.com/kata/rot13-1 вот ссылка на задачу на кодварс.
Кстати, возможно твою задачу можно переписать с использованием maketrans. ROT13 через мэйктранс в пару строк пишется


Successfully aliased the URL <https://kashmirnews-be-clcrlbrliw.now.sh> to the following alias.

* https://kashmirnews.now.sh


加入了退出用户登录功能


This is more about why you need 2 loops. Of course you need a loop to read all the data. But here you're reading the file content, yet you check the username and password after you read every line. Why not check line by line?