[R/aggregate-methods.R:122:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L122) *style:* **Variable or function name should be snake_case.**
```r
.aggregateFuns <- c("sum", "mean")
^~~~~~~~~~~~~~
```
[R/aggregate-methods.R:127:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L127) *style:* **Variable or function name should be snake_case.**
```r
.aggregateMessage <- function(groupings, fun) {
^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:128:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L128) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
    assert_is_factor(groupings)
    ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:129:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L129) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(fun)
    ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:153:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L153) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:154:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L154) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:155:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L155) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(object), names(groupings))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L156) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:158:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L158) *warning:* **no visible global function definition for ‘.aggregateMessage’**
```r
        .aggregateMessage(groupings, fun = fun)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:220:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L220) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:221:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L221) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:222:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L222) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(object), names(groupings))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:223:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L223) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:225:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L225) *warning:* **no visible global function definition for ‘.aggregateMessage’**
```r
        .aggregateMessage(groupings, fun = fun)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:281:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L281) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:282:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L282) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(col)
        ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:286:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L286) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(rowData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:286:40:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L286) *warning:* **no visible global function definition for ‘rowData’**
```r
        assert_is_subset(col, colnames(rowData(object)))
                                       ^~~~~~~
```
[R/aggregate-methods.R:287:22:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L287) *warning:* **no visible global function definition for ‘rowData’**
```r
        groupings <- rowData(object)[[col]]
                     ^~~~~~~
```
[R/aggregate-methods.R:288:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L288) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:289:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L289) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:312:36:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L312) *warning:* **no visible global function definition for ‘emptyRanges’**
```r
            args[["rowRanges"]] <- emptyRanges(names = rownames)
                                   ^~~~~~~~~~~
```
[R/aggregate-methods.R:314:34:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L314) *warning:* **no visible global function definition for ‘DataFrame’**
```r
            args[["rowData"]] <- DataFrame(row.names = rownames)
                                 ^~~~~~~~~
```
[R/aggregate-methods.R:316:30:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L316) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
        se <- do.call(what = SummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:337:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L337) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
        assertHasValidDimnames(object)
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:338:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L338) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(col)
        ^~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:342:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L342) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(colData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:342:40:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L342) *warning:* **no visible global function definition for ‘colData’**
```r
        assert_is_subset(col, colnames(colData(object)))
                                       ^~~~~~~
```
[R/aggregate-methods.R:343:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L343) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(col, colnames(sampleData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:344:22:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L344) *warning:* **no visible global function definition for ‘colData’**
```r
        groupings <- colData(object)[[col]]
                     ^~~~~~~
```
[R/aggregate-methods.R:345:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L345) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(groupings)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:346:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L346) *warning:* **no visible global function definition for ‘assertAllAreValidNames’**
```r
        assertAllAreValidNames(levels(groupings))
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:364:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L364) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- sampleData(object)[["aggregate"]]
        ^~~~~~~~~~~
```
[R/aggregate-methods.R:365:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L365) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(sampleNames)
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:366:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L366) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- levels(sampleNames)
        ^~~~~~~~~~~
```
[R/aggregate-methods.R:367:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L367) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- DataFrame(
        ^~~~~~~~~~
```
[R/aggregate-methods.R:378:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L378) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- setdiff(interestingGroups(object), "sampleName")
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:379:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L379) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/aggregate-methods.R:389:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L389) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
        assertHasRownames(sampleData)
        ^~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:397:20:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L397) *warning:* **no visible global function definition for ‘rowRanges’**
```r
            args[["rowRanges"]] <- rowRanges(object)
                   ^~~~~~~~~
```
[R/aggregate-methods.R:399:20:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L399) *warning:* **no visible global function definition for ‘rowData’**
```r
            args[["rowData"]] <- rowData(object)
                   ^~~~~~~
```
[R/aggregate-methods.R:401:30:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L401) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
        se <- do.call(what = SummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:402:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L402) *warning:* **no visible global function definition for ‘metadata’**
```r
        metadata(se)[["aggregate"]] <- TRUE
        ^~~~~~~~
```
[R/aggregate-methods.R:402:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L402) *warning:* **no visible global function definition for ‘metadata<-’**
```r
        metadata(se)[["aggregate"]] <- TRUE
        ^~~~~~~~
```
[R/aggregate-methods.R:427:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L427) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(object)
        ^~~~~~~
```
[R/aggregate-methods.R:428:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L428) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(c("sampleID", "aggregate"), colnames(colData))
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:429:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L429) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
        assert_is_factor(colData[["aggregate"]])
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:463:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L463) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(names(groupings), colnames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:464:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L464) *warning:* **no visible global function definition for ‘colData<-’, Did you mean 'colData'?**
```r
        colData(object)[["aggregate"]] <- groupings
        ^~~~~~~
```
[R/aggregate-methods.R:472:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L472) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(rse, "RangedSummarizedExperiment")
        ^~~~~~~~~~~~~~~~
```
[R/aggregate-methods.R:475:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregate-methods.R#L475) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(rse)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘colData’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘colData<-’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
        ^~~~~~~
```
[R/aggregateCellsToSamples-methods.R:28:40:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/aggregateCellsToSamples-methods.R#L28) *warning:* **no visible global function definition for ‘cell2sample’**
```r
        colData(rse)[["aggregate"]] <- cell2sample(object)
                                       ^~~~~~~~~~~
```
[R/cell2sample-methods.R:33:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/cell2sample-methods.R#L33) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset("sampleID", colnames(colData(object)))
        ^~~~~~~~~~~~~~~~
```
[R/cell2sample-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/cell2sample-methods.R#L36) *style:* **Variable or function name should be snake_case.**
```r
        colData <- colData(object)
        ^~~~~~~
```
[R/cell2sample-methods.R:40:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/cell2sample-methods.R#L40) *warning:* **no visible global function definition for ‘assert_is_factor’**
```r
            assert_is_factor(sample)
            ^~~~~~~~~~~~~~~~
```
[R/combine-methods.R:80:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L80) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(class(x), class(y))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:91:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L91) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(x), rownames(y))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:94:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L94) *warning:* **no visible global function definition for ‘assert_are_disjoint_sets’**
```r
        assert_are_disjoint_sets(colnames(x), colnames(y))
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:124:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L124) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
            assert_are_identical(rowRanges(x), rowRanges(y))
            ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:125:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L125) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- rowRanges(x)
            ^~~~~~~~~
```
[R/combine-methods.R:126:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L126) *style:* **Variable or function name should be snake_case.**
```r
            rowData <- NULL
            ^~~~~~~
```
[R/combine-methods.R:128:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L128) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
            assert_are_identical(rowData(x), rowData(y))
            ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:129:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L129) *style:* **Variable or function name should be snake_case.**
```r
            rowData <- rowData(x)
            ^~~~~~~
```
[R/combine-methods.R:130:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L130) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- NULL
            ^~~~~~~~~
```
[R/combine-methods.R:134:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L134) *warning:* **no visible global function definition for ‘assert_are_set_equal’**
```r
        assert_are_set_equal(colnames(colData(x)), colnames(colData(y)))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/combine-methods.R:136:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L136) *style:* **Variable or function name should be snake_case.**
```r
        colData <- rbind(
        ^~~~~~~
```
[R/combine-methods.R:155:30:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/combine-methods.R#L155) *warning:* **no visible binding for global variable ‘makeSummarizedExperiment’**
```r
        se <- do.call(what = makeSummarizedExperiment, args = args)
                             ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L59) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
        assert_all_are_non_missing_nor_empty_character(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:60:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L60) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(gene2symbol, "Gene2Symbol")
        ^~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:121:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L121) *style:* **Variable and function names should not be longer than 30 characters.**
```r
convertGenesToSymbols.sparseMatrix <- convertGenesToSymbols.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:121:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L121) *style:* **Variable or function name should be snake_case.**
```r
convertGenesToSymbols.sparseMatrix <- convertGenesToSymbols.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:136:16:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L136) *warning:* **no visible global function definition for ‘Gene2Symbol’**
```r
        g2s <- Gene2Symbol(object)
               ^~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:138:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L138) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(symbols)
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:167:16:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L167) *warning:* **no visible global function definition for ‘Gene2Symbol’**
```r
        g2s <- Gene2Symbol(object)
               ^~~~~~~~~~~
```
[R/convertGenesToSymbols-methods.R:172:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertGenesToSymbols-methods.R#L172) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(g2s[["geneID"]])
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:22:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertSampleIDsToNames-methods.R#L22) *style:* **Variable or function name should be snake_case.**
```r
        sampleNames <- sampleNames(object)
        ^~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:30:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertSampleIDsToNames-methods.R#L30) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
            assert_has_no_duplicates(colnames)
            ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertSampleIDsToNames-methods.R:32:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertSampleIDsToNames-methods.R#L32) *warning:* **no visible global function definition for ‘colData’**
```r
            colData(object)[["sampleName"]] <- NULL
            ^~~~~~~
```
[R/convertSampleIDsToNames-methods.R:32:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertSampleIDsToNames-methods.R#L32) *warning:* **no visible global function definition for ‘colData<-’**
```r
            colData(object)[["sampleName"]] <- NULL
            ^~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:65:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L65) *warning:* **no visible global function definition for ‘assert_all_are_non_missing_nor_empty_character’**
```r
        assert_all_are_non_missing_nor_empty_character(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:66:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L66) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
        assert_has_no_duplicates(object)
        ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:67:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L67) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(tx2gene, "Tx2Gene")
        ^~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:102:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L102) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(aggregate)
        ^~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:111:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L111) *warning:* **no visible global function definition for ‘aggregateRows’**
```r
            aggregateRows(object, groupings = t2g)
            ^~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:130:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L130) *style:* **Variable and function names should not be longer than 30 characters.**
```r
convertTranscriptsToGenes.sparseMatrix <- convertTranscriptsToGenes.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:130:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L130) *style:* **Variable or function name should be snake_case.**
```r
convertTranscriptsToGenes.sparseMatrix <- convertTranscriptsToGenes.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertTranscriptsToGenes-methods.R:147:16:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/convertTranscriptsToGenes-methods.R#L147) *warning:* **no visible global function definition for ‘Tx2Gene’**
```r
        t2g <- Tx2Gene(object)
               ^~~~~~~
```
[R/counts-methods.R:39:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/counts-methods.R#L39) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset("counts", assayNames(object))
        ^~~~~~~~~~~~~~~~
```
[R/counts-methods.R:39:36:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/counts-methods.R#L39) *warning:* **no visible global function definition for ‘assayNames’**
```r
        assert_is_subset("counts", assayNames(object))
                                   ^~~~~~~~~~
```
[R/counts-methods.R:40:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/counts-methods.R#L40) *warning:* **no visible global function definition for ‘assays’**
```r
        assays(object)[["counts"]]
        ^~~~~~
```
[R/counts-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/counts-methods.R#L59) *warning:* **no visible global function definition for ‘assays’**
```r
        assays(object)[["counts"]] <- value
        ^~~~~~
```
[R/counts-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/counts-methods.R#L59) *warning:* **no visible global function definition for ‘assays<-’**
```r
        assays(object)[["counts"]] <- value
        ^~~~~~
```
[R/detectLanes.R:13:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectLanes.R#L13) *style:* **Variable or function name should be snake_case.**
```r
detectLanes <- function(
^~~~~~~~~~~
```
[R/detectLanes.R:17:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectLanes.R#L17) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(object)
    ^~~~~~~~~~~~~~~~~~~
```
[R/detectLanes.R:18:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectLanes.R#L18) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
    assert_is_a_string(lanePattern)
    ^~~~~~~~~~~~~~~~~~
```
[R/detectLanes.R:18:24:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectLanes.R#L18) *warning:* **no visible binding for global variable ‘lanePattern’**
```r
    assert_is_a_string(lanePattern)
                       ^~~~~~~~~~~
```
[R/detectLanes.R:21:20:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectLanes.R#L21) *warning:* **no visible global function definition for ‘str_match’**
```r
        as.integer(str_match(object, pattern)[, 2L])
                   ^~~~~~~~~
```
[R/detectOrganism.R:51:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectOrganism.R#L51) *style:* **Variable or function name should be snake_case.**
```r
detectOrganism <- function(object) {
^~~~~~~~~~~~~~
```
[R/detectOrganism.R:52:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectOrganism.R#L52) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(object)
    ^~~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:60:14:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectOrganism.R#L60) *warning:* **no visible global function definition for ‘.detectOrganism.string’**
```r
        x <- .detectOrganism.string(object[[i]])
             ^~~~~~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:74:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectOrganism.R#L74) *warning:* **no visible global function definition for ‘assert_is_a_string’**
```r
        assert_is_a_string(object)
        ^~~~~~~~~~~~~~~~~~
```
[R/detectOrganism.R:82:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/detectOrganism.R#L82) *warning:* **no visible global function definition for ‘assert_is_tbl_df’**
```r
        assert_is_tbl_df(data)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:50:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/geometricMean-methods.R#L50) *style:* **Variable or function name should be snake_case.**
```r
        removeNA = TRUE,
        ^~~~~~~~
```
[R/geometricMean-methods.R:51:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/geometricMean-methods.R#L51) *style:* **Variable or function name should be snake_case.**
```r
        zeroPropagate = FALSE
        ^~~~~~~~~~~~~
```
[R/geometricMean-methods.R:53:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/geometricMean-methods.R#L53) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(removeNA)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:54:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/geometricMean-methods.R#L54) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(zeroPropagate)
        ^~~~~~~~~~~~~~~~
```
[R/geometricMean-methods.R:113:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/geometricMean-methods.R#L113) *style:* **Variable or function name should be snake_case.**
```r
geometricMean.sparseMatrix <- geometricMean.matrix
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:34:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/logRatio-methods.R#L34) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(base)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/logRatio-methods.R#L36) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
        assert_all_are_positive(base)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:57:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/logRatio-methods.R#L57) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
        assertIsAnImplicitInteger(base)
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/logRatio-methods.R:59:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/logRatio-methods.R#L59) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
        assert_all_are_positive(base)
        ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:25:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSingleCellExperiment.R#L25) *style:* **Variable or function name should be snake_case.**
```r
makeSingleCellExperiment <- function(
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:27:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSingleCellExperiment.R#L27) *style:* **Variable or function name should be snake_case.**
```r
    rowRanges,
    ^~~~~~~~~
```
[R/makeSingleCellExperiment.R:28:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSingleCellExperiment.R#L28) *style:* **Variable or function name should be snake_case.**
```r
    colData,
    ^~~~~~~
```
[R/makeSingleCellExperiment.R:30:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSingleCellExperiment.R#L30) *style:* **Variable or function name should be snake_case.**
```r
    transgeneNames = NULL,
    ^~~~~~~~~~~~~~
```
[R/makeSingleCellExperiment.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSingleCellExperiment.R#L31) *style:* **Variable or function name should be snake_case.**
```r
    spikeNames = NULL
    ^~~~~~~~~~
```
[R/makeSingleCellExperiment.R:56:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSingleCellExperiment.R#L56) *warning:* **no visible global function definition for ‘isSpike<-’**
```r
            isSpike(sce, spikeNames[[i]]) <- spikeNames[[i]]
            ^~~~~~~
```
[R/makeSummarizedExperiment.R:104:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L104) *style:* **Variable or function name should be snake_case.**
```r
makeSummarizedExperiment <- function(
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:106:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L106) *style:* **Variable or function name should be snake_case.**
```r
    rowRanges = NULL,  # recommended
    ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:107:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L107) *style:* **Variable or function name should be snake_case.**
```r
    rowData = NULL,    # not recommended
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:108:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L108) *style:* **Variable or function name should be snake_case.**
```r
    colData = NULL,
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:110:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L110) *style:* **Variable or function name should be snake_case.**
```r
    transgeneNames = NULL,
    ^~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:111:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    spikeNames = NULL
    ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:118:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L118) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(rowRanges, classes = c("GRanges", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:119:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L119) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(rowData, classes = c("DataFrame", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:122:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L122) *warning:* **no visible global function definition for ‘assert_is_null’**
```r
        assert_is_null(rowData)
        ^~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:124:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L124) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(colData, classes = c("DataFrame", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:125:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L125) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(metadata, classes = c("list", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:126:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L126) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(transgeneNames, classes = c("character", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:127:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L127) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(spikeNames, classes = c("character", "NULL"))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:136:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L136) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
    assert_are_identical(names(assays)[[1L]], "counts")
    ^~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:141:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L141) *warning:* **no visible global function definition for ‘assertHasValidDimnames’**
```r
    assertHasValidDimnames(assay)
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:148:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L148) *style:* **Variable or function name should be snake_case.**
```r
    mcolsNames <- NULL
    ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:155:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L155) *warning:* **no visible global function definition for ‘assert_are_intersecting_sets’**
```r
        assert_are_intersecting_sets(rownames(assay), names(rowRanges))
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L156) *style:* **Variable or function name should be snake_case.**
```r
        mcolsNames <- names(mcols(rowRanges))
        ^~~~~~~~~~
```
[R/makeSummarizedExperiment.R:156:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L156) *warning:* **no visible global function definition for ‘mcols’, Did you mean 'acos'?**
```r
        mcolsNames <- names(mcols(rowRanges))
        ^~~~~
```
[R/makeSummarizedExperiment.R:160:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L160) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
            assert_is_subset(transgeneNames, setdiff)
            ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:161:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L161) *style:* **Variable or function name should be snake_case.**
```r
            transgeneRanges <- emptyRanges(
            ^~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:166:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L166) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- suppressWarnings(c(transgeneRanges, rowRanges))
            ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:171:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L171) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
            assert_is_subset(spikeNames, setdiff)
            ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:172:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L172) *style:* **Variable or function name should be snake_case.**
```r
            spikeRanges <- emptyRanges(
            ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:177:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L177) *style:* **Variable or function name should be snake_case.**
```r
            rowRanges <- suppressWarnings(c(spikeRanges, rowRanges))
            ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:181:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L181) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), rownames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:182:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L182) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData[rownames(assay), , drop = FALSE]
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:185:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L185) *style:* **Variable or function name should be snake_case.**
```r
        rowRanges <- emptyRanges(names = rownames(assay))
        ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:185:22:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L185) *warning:* **no visible global function definition for ‘emptyRanges’**
```r
        rowRanges <- emptyRanges(names = rownames(assay))
                     ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:194:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L194) *warning:* **no visible global function definition for ‘assert_that’**
```r
    assert_that(is(data, "DataFrame"))
    ^~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:213:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L213) *warning:* **no visible global function definition for ‘assert_has_names’**
```r
        assert_has_names(rowRanges)
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:214:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L214) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), names(rowRanges))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:215:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L215) *style:* **Variable or function name should be snake_case.**
```r
        rowRanges <- rowRanges[rownames(assay)]
        ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:217:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L217) *warning:* **no visible global function definition for ‘assertHasRownames’**
```r
        assertHasRownames(rowData)
        ^~~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:218:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L218) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
        assert_is_subset(rownames(assay), rownames(rowData))
        ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:219:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L219) *style:* **Variable or function name should be snake_case.**
```r
        rowData <- rowData[rownames(assay), , drop = FALSE]
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:224:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L224) *style:* **Variable or function name should be snake_case.**
```r
        colData <- DataFrame(row.names = colnames(assay))
        ^~~~~~~
```
[R/makeSummarizedExperiment.R:224:20:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L224) *warning:* **no visible global function definition for ‘DataFrame’**
```r
        colData <- DataFrame(row.names = colnames(assay))
                   ^~~~~~~~~
```
[R/makeSummarizedExperiment.R:226:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L226) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(colnames(assay), rownames(colData))
    ^~~~~~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:227:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L227) *style:* **Variable or function name should be snake_case.**
```r
    colData <- colData[colnames(assay), , drop = FALSE]
    ^~~~~~~
```
[R/makeSummarizedExperiment.R:232:25:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L232) *warning:* **no visible global function definition for ‘realpath’**
```r
    metadata[["wd"]] <- realpath(".")
                        ^~~~~~~~
```
[R/makeSummarizedExperiment.R:233:34:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L233) *warning:* **no visible global function definition for ‘session_info’, Did you mean 'sessionInfo'?**
```r
    metadata[["sessionInfo"]] <- session_info(include_base = TRUE)
                                 ^~~~~~~~~~~~
```
[R/makeSummarizedExperiment.R:247:26:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/makeSummarizedExperiment.R#L247) *warning:* **no visible binding for global variable ‘SummarizedExperiment’**
```r
    se <- do.call(what = SummarizedExperiment, args = args)
                         ^~~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:24:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapCellsToSamples.R#L24) *style:* **Variable or function name should be snake_case.**
```r
mapCellsToSamples <- function(cells, samples) {
^~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:25:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapCellsToSamples.R#L25) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(cells)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:26:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapCellsToSamples.R#L26) *warning:* **no visible global function definition for ‘assert_has_no_duplicates’**
```r
    assert_has_no_duplicates(cells)
    ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:27:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapCellsToSamples.R#L27) *warning:* **no visible global function definition for ‘assert_is_any_of’**
```r
    assert_is_any_of(samples, c("character", "factor"))
    ^~~~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:39:41:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapCellsToSamples.R#L39) *warning:* **no visible binding for global variable ‘barcodePattern’**
```r
        pattern <- paste0("^(", sample, barcodePattern)
                                        ^~~~~~~~~~~~~~
```
[R/mapCellsToSamples.R:57:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapCellsToSamples.R#L57) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
    assert_are_identical(length(cells), length(cell2sample))
    ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:69:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L69) *style:* **Variable or function name should be snake_case.**
```r
.mapGenes <- function(object, genes, strict = TRUE) {
^~~~~~~~~
```
[R/mapGenes-methods.R:70:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L70) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
    assert_is_all_of(object, "Gene2Symbol")
    ^~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:72:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L72) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(genes)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:73:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L73) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(genes)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:74:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L74) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
    assert_is_a_bool(strict)
    ^~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:80:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L80) *warning:* **no visible global function definition for ‘assertAllAreUniqueGeneNames’**
```r
        assertAllAreUniqueGeneNames(object, genes)
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:109:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L109) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(mapped)
    ^~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:150:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L150) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:209:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L209) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/mapGenes-methods.R:268:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/mapGenes-methods.R#L268) *warning:* **no visible global function definition for ‘assert_are_identical’**
```r
        assert_are_identical(rownames(g2s), rownames(object))
        ^~~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:18:1:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L18) *style:* **Variable or function name should be snake_case.**
```r
matchInterestingGroups <- function(object, interestingGroups = NULL) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:18:44:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L18) *style:* **Variable or function name should be snake_case.**
```r
matchInterestingGroups <- function(object, interestingGroups = NULL) {
                                           ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:20:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L20) *style:* **Variable or function name should be snake_case.**
```r
        interestingGroups <- interestingGroups(object, check = FALSE)
        ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:25:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L25) *style:* **Variable or function name should be snake_case.**
```r
            interestingGroups <- "sampleName"
            ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:28:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L28) *warning:* **no visible global function definition for ‘interestingGroups<-’, Did you mean 'interestingGroups'?**
```r
        interestingGroups(object) <- interestingGroups
        ^~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:30:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L30) *warning:* **no visible global function definition for ‘assert_is_character’**
```r
    assert_is_character(interestingGroups)
    ^~~~~~~~~~~~~~~~~~~
```
[R/matchInterestingGroups.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/matchInterestingGroups.R#L31) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
    assert_is_non_empty(interestingGroups)
    ^~~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:32:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L32) *style:* **Variable or function name should be snake_case.**
```r
        nonzeroGenes = FALSE,
        ^~~~~~~~~~~~
```
[R/meltCounts-methods.R:36:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L36) *warning:* **no visible global function definition for ‘assert_is_scalar’**
```r
        assert_is_scalar(assay)
        ^~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:37:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L37) *warning:* **no visible global function definition for ‘assert_is_a_bool’**
```r
        assert_is_a_bool(nonzeroGenes)
        ^~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:41:19:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L41) *warning:* **no visible global function definition for ‘assays’, Did you mean 'assay'?**
```r
        counts <- assays(object)[[assay]]
                  ^~~~~~
```
[R/meltCounts-methods.R:42:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L42) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
        assert_is_non_empty(counts)
        ^~~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:61:13:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L61) *warning:* **no visible global function definition for ‘assert_is_function’**
```r
            assert_is_function(fun)
            ^~~~~~~~~~~~~~~~~~
```
[R/meltCounts-methods.R:66:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/meltCounts-methods.R#L66) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/metrics-methods.R:81:17:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L81) *warning:* **no visible global function definition for ‘colData’**
```r
        data <- colData(object)
                ^~~~~~~
```
[R/metrics-methods.R:127:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L127) *warning:* **no visible global function definition for ‘assert_is_function’**
```r
        assert_is_function(FUN)
        ^~~~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:129:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L129) *warning:* **no visible global function definition for ‘assert_is_all_of’**
```r
        assert_is_all_of(metrics, "grouped_df")
        ^~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:139:21:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L139) *warning:* **no visible global function definition for ‘select’**
```r
            data <- select(metrics, matches(pattern))
                    ^~~~~~
```
[R/metrics-methods.R:139:37:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L139) *warning:* **no visible global function definition for ‘matches’, Did you mean 'match'?**
```r
            data <- select(metrics, matches(pattern))
                                    ^~~~~~~
```
[R/metrics-methods.R:142:21:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L142) *warning:* **no visible global function definition for ‘select_if’**
```r
            data <- select_if(metrics, is.numeric)
                    ^~~~~~~~~
```
[R/metrics-methods.R:144:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L144) *warning:* **no visible global function definition for ‘assert_is_non_empty’**
```r
        assert_is_non_empty(data)
        ^~~~~~~~~~~~~~~~~~~
```
[R/metrics-methods.R:145:9:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/metrics-methods.R#L145) *style:* **Variable or function name should be snake_case.**
```r
        sampleData <- sampleData(object) %>%
        ^~~~~~~~~~
```
[R/microplate.R:31:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L31) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(plates)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:33:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L33) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(plates)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:35:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L35) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(wells)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:37:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L37) *warning:* **no visible global function definition for ‘assert_all_are_positive’**
```r
    assert_all_are_positive(wells)
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:38:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L38) *warning:* **no visible global function definition for ‘assert_is_subset’**
```r
    assert_is_subset(wells, c(96L, 384L))
    ^~~~~~~~~~~~~~~~
```
[R/microplate.R:40:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L40) *warning:* **no visible global function definition for ‘assertIsAnImplicitInteger’**
```r
    assertIsAnImplicitInteger(controls)
    ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/microplate.R:42:5:](https://github.com/steinbaugh/basejump.experiment/blob/4f799f9f59b06104c28617a23490f20490ade4c8/R/microplate.R#L42) *warning:* **no visible global function definition for ‘assert_all_are_non_negative’**
```r
    assert_all_are_non_negative(controls)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Here I deleted one of the assertion lines to replace it with the correct assertion. I realized my error in the assertion on line 35 after already writing the get_shift_values method.


@vt-alt Fixed in https://github.com/besser82/libxcrypt/commit/c090c2888681fc531391356c0a1c6bb1c64d1ee4.


@vt-alt Removed the macro in https://github.com/besser82/libxcrypt/commit/06e179e49d26079292af3b1543d9d315e0c2a256.


You can shrink the amount of code by 50%, if you do this instead:

```js
export { BansheeCarousel, BansheeCarouselSlide } from './Carousel'
export { default as BansheeErrorBoundary } from './ErrorBoundary'
// etc'
```


Here the only reason I have a test change and a lib change are because I decided to rename the method as I was writing it in lib because I did not want to confuse my method with the built in .rotate method. I changed the method name from rotate_values to shift.


No clue where this commit came from. vscode just did it. So, hopefully it didn't reverse any changes.


I am working for yii2 2.0.15: https://github.com/edgardmessias/yii2-ibm-db2/tree/yii2_2.0.15.1
I need update some codes and unit tests

And this commit work for my friend


These values used to be plain strings, but they were rewritten in history.


Here the reason I have a change to the test file at the same time as a change to the lib file was that I incorrectly wrote the test (called the wrong method name in the test and renamed the test to be more exact). I realized this after having already written the code to pass the test.


nice


another comment


Here I added a skip to one of the tests that I realized will not pass on any date other than today, and added a small correction to the encrypt arguments.


Hehe, yeah. I realised almost straightaway but it seemed to be doing ok so
I just left it :-)


The reason I have a change to the test file on this, is that I wanted to isolate the test I was working on to just test that, so I commented out the others. I realized I could have just skipped them also.


no thing


Please import scripts via cdn instead of /__/


Deployment failed with the following error:

~~~
Invalid request: config.github.enabled should be boolean
~~~


Awesome, today I learned!  I will apply this to a future branch, thank you @adi518!


@ell10t Can you please include what kind of issues are you having?
I've had a weird experience typing this down, as it also throw some errors on me.


`string.Join(" ", textLines).Split(...` лучше заменить на `textLines.SelectMany(s => s.Split(...`
Объединение в строку тут по логике лишнее. Плюс оно требует дополнительной памяти.

String.Empty тут не нужен. Split по пустой строке - это что-то сюрриалистичное)
По хорошем Split должен падать от такого, но Miscrosoft написали так, что он просто игнорируется.


Shouldn't be a `string`, can be anything.


Here I wrote a new test, skipped one that I knew would not pass on any other day than today, and caught a small error in my lib file.


Need more info


Isn't it going to look strange to have a mix of `Raku` and `Perl 6` blog posts in there?


## What is this?

Please explain


Successfully aliased the URL <https://my-app-cycypjtmgy.now.sh> to the following alias.

* https://sterderzee.be


done


@xoto10 no, I did mean relative_rank... It should give this penalty now only when king is aligned with rook horizontally but give a much bigger one instead.


Also, I don't know whether to be happy or sad the bash apparently allows you to nest quotes without escaping?


Please, this commit message doesn't help anybody. Explain what this commit/merge did instead, for example
```
Improve Item#getFile (#83)
* Item.getFile() now returns null if the Item is not File based instead of throwing an exception
* Use Item.isFileBased() more throughout the code
```


try to avoid the extra white space