[R/are_mrca_taxa_names_in_fastas.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/are_mrca_taxa_names_in_fastas.R#L11) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/are_mrca_taxa_non_intersecting.R#L12) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_operators.R#L12) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:19:22:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_operators.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_operators.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_operators.R#L34) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_operators.R:37:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_operators.R#L37) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_prior_distr.R#L20) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:30:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_prior_distr.R#L30) *warning:* **no visible global function definition for ‘is_id’**
```r
    testit::assert(is_id(id))
                   ^~~~~
```
[R/clock_model_to_xml_prior_distr.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_prior_distr.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_prior_distr.R:49:22:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_prior_distr.R#L49) *warning:* **no visible global function definition for ‘is_id’**
```r
      testit::assert(is_id(id))
                     ^~~~~
```
[R/clock_model_to_xml_state.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_state.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(clock_model$id))
                 ^~~~~
```
[R/clock_model_to_xml_state.R:26:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_state.R#L26) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_tracelog.R#L17) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_tracelog.R:19:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_tracelog.R#L19) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/clock_model_to_xml_tracelog.R:34:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_tracelog.R#L34) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
    testit::assert(is_strict_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_treelogger.R#L9) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  testit::assert(is_clock_model(clock_model))
                 ^~~~~~~~~~~~~~
```
[R/clock_model_to_xml_treelogger.R:24:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_model_to_xml_treelogger.R#L24) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_operators.R:10:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_models_to_xml_operators.R#L10) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_models_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_models_to_xml_state.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:16:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_models_to_xml_tracelog.R#L16) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_tracelog.R:23:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/clock_models_to_xml_tracelog.R#L23) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/create_beast2_input_1_12.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_1_12.R#L39) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
    testit::assert(are_initial_phylogenies(initial_phylogenies))
                   ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_beast.R:41:11:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_beast.R#L41) *warning:* **no visible global function definition for ‘create_beast2_beast_xml’**
```r
  text <- create_beast2_beast_xml(beast2_version = misc_options$beast2_version)
          ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:182:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L182) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:186:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L186) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L235) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:237:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L237) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:296:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L296) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(cbs_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:298:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L298) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:332:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L332) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:334:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L334) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:383:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L383) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:385:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L385) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_distr.R:446:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L446) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:448:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_distr.R#L448) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/create_beast2_input_init.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_init.R#L9) *warning:* **no visible global function definition for ‘are_initial_phylogenies’**
```r
  testit::assert(are_initial_phylogenies(initial_phylogenies))
                 ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_loggers.R:97:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_loggers.R#L97) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_beast2_input_loggers.R:175:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input_loggers.R#L175) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/create_beast2_input.R:45:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input.R#L45) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_priors[[1]]))
                   ^~~~~~~~~~~~~
```
[R/create_beast2_input.R:126:17:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input.R#L126) *warning:* **no visible global function definition for ‘get_n_taxa’**
```r
      n_taxa <- get_n_taxa(fasta_filename)
                ^~~~~~~~~~
```
[R/create_beast2_input.R:140:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_beast2_input.R#L140) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
    testit::assert(are_mrca_priors(mrca_priors))
                   ^~~~~~~~~~~~~~~
```
[R/create_gamma_site_model.R:77:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_gamma_site_model.R#L77) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc.R:41:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_mcmc.R#L41) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  testit::assert(is_mcmc(mcmc))
                 ^~~~~~~
```
[R/create_mrca_prior.R:63:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_mrca_prior.R#L63) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  testit::assert(is_mrca_prior(mrca_prior))
                 ^~~~~~~~~~~~~
```
[R/create_random.R:60:3:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L60) *warning:* **no visible global function definition for ‘create_cbs_tree_prior’**
```r
  create_cbs_tree_prior()
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:333:21:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L333) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
  all_taxa_names <- get_taxa_names(fasta_filename)
                    ^~~~~~~~~~~~~~
```
[R/create_random.R:356:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L356) *warning:* **no visible global function definition for ‘create_rnd_mrca_prior’**
```r
    create_rnd_mrca_prior(fasta_filename)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:398:3:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L398) *warning:* **no visible global function definition for ‘create_one_div_x_distr’**
```r
  create_one_div_x_distr()
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:407:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L407) *warning:* **no visible global function definition for ‘create_alpha_param’**
```r
    create_alpha_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:409:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L409) *warning:* **no visible global function definition for ‘create_beta_param’**
```r
    create_beta_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:411:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L411) *warning:* **no visible global function definition for ‘create_clock_rate_param’**
```r
    create_clock_rate_param()
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:413:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L413) *warning:* **no visible global function definition for ‘create_kappa_1_param’**
```r
    create_kappa_1_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:415:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L415) *warning:* **no visible global function definition for ‘create_kappa_2_param’**
```r
    create_kappa_2_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:417:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L417) *warning:* **no visible global function definition for ‘create_lambda_param’**
```r
    create_lambda_param()
    ^~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:419:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L419) *warning:* **no visible global function definition for ‘create_m_param’**
```r
    create_m_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:421:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L421) *warning:* **no visible global function definition for ‘create_mean_param’**
```r
    create_mean_param()
    ^~~~~~~~~~~~~~~~~
```
[R/create_random.R:423:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L423) *warning:* **no visible global function definition for ‘create_mu_param’**
```r
    create_mu_param()
    ^~~~~~~~~~~~~~~
```
[R/create_random.R:425:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L425) *warning:* **no visible global function definition for ‘create_rate_ac_param’**
```r
    create_rate_ac_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:427:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L427) *warning:* **no visible global function definition for ‘create_rate_ag_param’**
```r
    create_rate_ag_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:429:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L429) *warning:* **no visible global function definition for ‘create_rate_at_param’**
```r
    create_rate_at_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:431:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L431) *warning:* **no visible global function definition for ‘create_rate_cg_param’**
```r
    create_rate_cg_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:433:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L433) *warning:* **no visible global function definition for ‘create_rate_ct_param’**
```r
    create_rate_ct_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:435:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L435) *warning:* **no visible global function definition for ‘create_rate_gt_param’**
```r
    create_rate_gt_param()
    ^~~~~~~~~~~~~~~~~~~~
```
[R/create_random.R:437:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L437) *warning:* **no visible global function definition for ‘create_s_param’**
```r
    create_s_param()
    ^~~~~~~~~~~~~~
```
[R/create_random.R:439:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L439) *warning:* **no visible global function definition for ‘create_scale_param’**
```r
    create_scale_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_random.R:442:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_random.R#L442) *warning:* **no visible global function definition for ‘create_sigma_param’**
```r
    create_sigma_param()
    ^~~~~~~~~~~~~~~~~~
```
[R/create_site_model.R:76:3:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/create_site_model.R#L76) *warning:* **no visible global function definition for ‘check_gamma_site_model’**
```r
  check_gamma_site_model(gamma_site_model)
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:39:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L39) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:54:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L54) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(distr))
                 ^~~~~~~~~~~~~
```
[R/distr_to_xml.R:56:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L56) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:84:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L84) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(distr))
                 ^~~~~~~~~~~~
```
[R/distr_to_xml.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L86) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:109:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L109) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(distr))
                 ^~~~~~~~~~~~~~
```
[R/distr_to_xml.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L111) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:140:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L140) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:142:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L142) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:171:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L171) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:173:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L173) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:201:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L201) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(distr))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:203:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L203) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:233:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L233) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(distr))
                 ^~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:235:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L235) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:264:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L264) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(distr))
                 ^~~~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:266:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L266) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:282:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L282) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:284:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L284) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/distr_to_xml.R:308:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L308) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(distr))
                 ^~~~~~~~~~~~~~~~
```
[R/distr_to_xml.R:310:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/distr_to_xml.R#L310) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/fastas_to_phylos.R:42:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/fastas_to_phylos.R#L42) *warning:* **no visible global function definition for ‘fasta_to_phylo’**
```r
    phylos[[i]] <- fasta_to_phylo(fasta_filename, crown_age)
                   ^~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:9:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/gamma_site_model_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  testit::assert(is_site_model(site_model))
                 ^~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_prior_distr.R:11:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/gamma_site_model_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/gamma_site_model_to_xml_state.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/gamma_site_model_to_xml_state.R#L13) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/gamma_site_model_to_xml_state.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/gamma_site_model_to_xml_state.R#L14) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/get_alignment_ids.R:16:22:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_alignment_ids.R#L16) *warning:* **no visible binding for global variable ‘get_alignment_id’**
```r
  unlist(lapply(ids, get_alignment_id))
                     ^~~~~~~~~~~~~~~~
```
[R/get_clock_model_name.R:17:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_clock_model_name.R#L17) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(clock_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_clock_models_ids.R:8:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_clock_models_ids.R#L8) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_distr_n_params.R:65:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_distr_n_params.R#L65) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_distrs.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_gamma_site_model_n_distrs.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:28:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_gamma_site_model_n_params.R#L28) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/get_gamma_site_model_n_params.R:32:5:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_gamma_site_model_n_params.R#L32) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    get_distr_n_params(gamma_site_model$gamma_shape_prior_distr)
    ^~~~~~~~~~~~~~~~~~
```
[R/get_has_non_strict_clock_model.R:7:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_has_non_strict_clock_model.R#L7) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:33:32:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_site_model_n_distrs.R#L33) *warning:* **no visible global function definition for ‘get_gamma_site_model_n_distrs’**
```r
  gamma_site_model_n_distrs <- get_gamma_site_model_n_distrs(gamma_site_model)
                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_distrs.R:41:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_site_model_n_distrs.R#L41) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_model_n_params.R:50:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_site_model_n_params.R#L50) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(site_model))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_site_models_n_distrs.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_site_models_n_distrs.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_site_models_n_params.R:27:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_site_models_n_params.R#L27) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/get_tree_prior_n_distrs.R:46:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_tree_prior_n_distrs.R#L46) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:48:12:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_tree_prior_n_params.R#L48) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
    return(get_distr_n_params(tree_prior$pop_size_distr))
           ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_prior_n_params.R:55:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_tree_prior_n_params.R#L55) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_tree_priors_n_distrs.R#L22) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
    testit::assert(is_tree_prior(tree_prior))
                   ^~~~~~~~~~~~~
```
[R/get_tree_priors_n_distrs.R:23:14:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_tree_priors_n_distrs.R#L23) *warning:* **no visible global function definition for ‘get_tree_prior_n_distrs’**
```r
    n <- n + get_tree_prior_n_distrs(tree_prior)
             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_unlinked_clock_models.R#L6) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_clock_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_unlinked_clock_models.R#L17) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(results))
                 ^~~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:6:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_unlinked_site_models.R#L6) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/get_unlinked_site_models.R:17:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/get_unlinked_site_models.R#L17) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(results))
                 ^~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:19:10:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/has_xml_opening_tag.R#L19) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !is.na(find_first_xml_opening_tag_line(lines, section))
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:15:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L15) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:22:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L22) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
    testit::assert(is_clock_model(clock_model))
                   ^~~~~~~~~~~~~~
```
[R/init_clock_models.R:45:22:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L45) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
      testit::assert(is_strict_clock_model(clock_model))
                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:78:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L78) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:85:26:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L85) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:92:26:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L92) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr)
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_clock_models.R#L125) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_distr.R#L14) *warning:* **no visible global function definition for ‘is_distr’**
```r
  testit::assert(is_distr(distr))
                 ^~~~~~~~
```
[R/init_distr.R:100:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_distr.R#L100) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(distr))
                   ^~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:20:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_gamma_site_model.R#L20) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_gamma_site_model.R:33:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_gamma_site_model.R#L33) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  testit::assert(is_gamma_site_model(gamma_site_model))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_mrca_priors.R#L14) *warning:* **no visible global function definition for ‘are_mrca_priors’**
```r
  testit::assert(are_mrca_priors(mrca_priors))
                 ^~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_mrca_priors.R#L19) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_mrca_priors.R:37:30:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_mrca_priors.R#L37) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
      param_id <- param_id + get_distr_n_params(mrca_prior$mrca_distr)
                             ^~~~~~~~~~~~~~~~~~
```
[R/init_mrca_priors.R:40:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_mrca_priors.R#L40) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
    testit::assert(is_mrca_prior(mrca_prior))
                   ^~~~~~~~~~~~~
```
[R/init_param.R:13:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_param.R#L13) *warning:* **no visible global function definition for ‘is_param’**
```r
  testit::assert(is_param(param))
                 ^~~~~~~~
```
[R/init_site_models.R:14:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L14) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models))
                 ^~~~~~~~~~~~~~~
```
[R/init_site_models.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L19) *warning:* **no visible global function definition for ‘is_site_model’**
```r
    testit::assert(is_site_model(site_model))
                   ^~~~~~~~~~~~~
```
[R/init_site_models.R:42:22:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L42) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
      testit::assert(is_tn93_site_model(site_model))
                     ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:54:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L54) *warning:* **no visible global function definition for ‘is_init_site_model’**
```r
    testit::assert(is_init_site_model(site_model)) # Not yet
                   ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:74:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L74) *warning:* **no visible global function definition for ‘is_gtr_site_model’**
```r
  testit::assert(is_gtr_site_model(gtr_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:207:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L207) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(hky_site_model))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:259:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L259) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(jc69_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_site_models.R#L299) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(tn93_site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:66:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_tree_priors.R#L66) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(bd_tree_prior))
                 ^~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:94:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_tree_priors.R#L94) *warning:* **no visible global function definition for ‘is_ccp_tree_prior’**
```r
  testit::assert(is_ccp_tree_prior(ccp_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:115:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_tree_priors.R#L115) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(cep_tree_prior))
                 ^~~~~~~~~~~~~~~~~
```
[R/init_tree_priors.R:146:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/init_tree_priors.R#L146) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(yule_tree_prior))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:10:13:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_clock_model_name.R#L10) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names()
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:11:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  if (is_rln_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:12:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_clock_model.R#L12) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  if (is_strict_clock_model(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:68:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_clock_model.R#L68) *warning:* **no visible global function definition for ‘is_param’**
```r
  if (!is_param(x$clock_rate_param)) return(FALSE)
       ^~~~~~~~
```
[R/is_clock_model.R:70:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_clock_model.R#L70) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$clock_rate_distr)) return(FALSE)
       ^~~~~~~~
```
[R/is_default_mcmc.R:15:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_default_mcmc.R#L15) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE)
       ^~~~~~~
```
[R/is_distr.R:23:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L23) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  if (is_beta_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~
```
[R/is_distr.R:24:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L24) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  if (is_exp_distr(x)) return(TRUE)
      ^~~~~~~~~~~~
```
[R/is_distr.R:25:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L25) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  if (is_gamma_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~
```
[R/is_distr.R:26:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L26) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  if (is_inv_gamma_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:27:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L27) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  if (is_laplace_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:28:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L28) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  if (is_log_normal_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:29:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L29) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  if (is_normal_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~
```
[R/is_distr.R:30:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L30) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  if (is_one_div_x_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~~~
```
[R/is_distr.R:31:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L31) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  if (is_poisson_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:32:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L32) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  if (is_uniform_distr(x)) return(TRUE)
      ^~~~~~~~~~~~~~~~
```
[R/is_distr.R:53:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L53) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:55:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L55) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:76:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L76) *warning:* **no visible global function definition for ‘is_mean_param’**
```r
  if (!is_mean_param(x$mean)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:97:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L97) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:99:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L99) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:120:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L120) *warning:* **no visible global function definition for ‘is_alpha_param’**
```r
  if (!is_alpha_param(x$alpha)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:122:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L122) *warning:* **no visible global function definition for ‘is_beta_param’**
```r
  if (!is_beta_param(x$beta)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:146:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L146) *warning:* **no visible global function definition for ‘is_mu_param’**
```r
  if (!is_mu_param(x$mu)) return(FALSE)
       ^~~~~~~~~~~
```
[R/is_distr.R:148:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L148) *warning:* **no visible global function definition for ‘is_scale_param’**
```r
  if (!is_scale_param(x$scale)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:181:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L181) *warning:* **no visible global function definition for ‘is_m_param’**
```r
  if (!is_m_param(x$m)) return(FALSE)
       ^~~~~~~~~~
```
[R/is_distr.R:183:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L183) *warning:* **no visible global function definition for ‘is_s_param’**
```r
  if (!is_s_param(x$s)) return(FALSE)
       ^~~~~~~~~~
```
[R/is_distr.R:204:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L204) *warning:* **no visible global function definition for ‘is_mean_param’**
```r
  if (!is_mean_param(x$mean)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_distr.R:206:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L206) *warning:* **no visible global function definition for ‘is_sigma_param’**
```r
  if (!is_sigma_param(x$sigma)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_distr.R:244:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_distr.R#L244) *warning:* **no visible global function definition for ‘is_lambda_param’**
```r
  if (!is_lambda_param(x$lambda)) return(FALSE)
       ^~~~~~~~~~~~~~~
```
[R/is_freq_equilibrium_name.R:17:13:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_freq_equilibrium_name.R#L17) *warning:* **no visible global function definition for ‘get_freq_equilibrium_names’**
```r
  name %in% get_freq_equilibrium_names()
            ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_index_of_first_shared_clock_model.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_index_of_first_shared_clock_model.R#L12) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/is_index_of_non_first_shared_clock_model.R:12:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_index_of_non_first_shared_clock_model.R#L12) *warning:* **no visible global function definition for ‘are_clock_models’**
```r
  testit::assert(are_clock_models(clock_models))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_clock_model.R#L11) *warning:* **no visible global function definition for ‘is_clock_model’**
```r
  if (!is_clock_model(x)) return(FALSE)
       ^~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:15:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_clock_model.R#L15) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
    testit::assert(is_rln_clock_model(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:29:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_clock_model.R#L29) *warning:* **no visible global function definition for ‘is_rln_clock_model’**
```r
  testit::assert(is_rln_clock_model(rln_clock_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_clock_model.R:43:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_clock_model.R#L43) *warning:* **no visible global function definition for ‘is_strict_clock_model’**
```r
  testit::assert(is_strict_clock_model(strict_clock_model))
                 ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L11) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x)) return(FALSE)
       ^~~~~~~~
```
[R/is_init_distr.R:33:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L33) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(x))
                   ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:47:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L47) *warning:* **no visible global function definition for ‘is_beta_distr’**
```r
  testit::assert(is_beta_distr(x))
                 ^~~~~~~~~~~~~
```
[R/is_init_distr.R:60:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L60) *warning:* **no visible global function definition for ‘is_exp_distr’**
```r
  testit::assert(is_exp_distr(x))
                 ^~~~~~~~~~~~
```
[R/is_init_distr.R:73:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L73) *warning:* **no visible global function definition for ‘is_gamma_distr’**
```r
  testit::assert(is_gamma_distr(x))
                 ^~~~~~~~~~~~~~
```
[R/is_init_distr.R:86:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L86) *warning:* **no visible global function definition for ‘is_inv_gamma_distr’**
```r
  testit::assert(is_inv_gamma_distr(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:99:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L99) *warning:* **no visible global function definition for ‘is_laplace_distr’**
```r
  testit::assert(is_laplace_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:112:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L112) *warning:* **no visible global function definition for ‘is_log_normal_distr’**
```r
  testit::assert(is_log_normal_distr(x))
                 ^~~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:125:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L125) *warning:* **no visible global function definition for ‘is_normal_distr’**
```r
  testit::assert(is_normal_distr(x))
                 ^~~~~~~~~~~~~~~
```
[R/is_init_distr.R:138:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L138) *warning:* **no visible global function definition for ‘is_one_div_x_distr’**
```r
  testit::assert(is_one_div_x_distr(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:151:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L151) *warning:* **no visible global function definition for ‘is_poisson_distr’**
```r
  testit::assert(is_poisson_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_distr.R:164:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_distr.R#L164) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
  testit::assert(is_uniform_distr(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_gamma_site_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_gamma_site_model.R#L11) *warning:* **no visible global function definition for ‘is_gamma_site_model’**
```r
  if (!is_gamma_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~~~~~~~
```
[R/is_init_mrca_prior.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_mrca_prior.R#L10) *warning:* **no visible global function definition for ‘is_mrca_prior’**
```r
  if (!is_mrca_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_mrca_prior.R:15:7:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_mrca_prior.R#L15) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (is_distr(x$mrca_distr) && !is_init_distr(x$mrca_distr)) return(FALSE)
      ^~~~~~~~
```
[R/is_init_mrca_prior.R:15:34:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_mrca_prior.R#L15) *warning:* **no visible global function definition for ‘is_init_distr’**
```r
  if (is_distr(x$mrca_distr) && !is_init_distr(x$mrca_distr)) return(FALSE)
                                 ^~~~~~~~~~~~~
```
[R/is_init_site_model.R:11:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_site_model.R#L11) *warning:* **no visible global function definition for ‘is_site_model’**
```r
  if (!is_site_model(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_site_model.R:19:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_site_model.R#L19) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
    testit::assert(is_tn93_site_model(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:71:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_site_model.R#L71) *warning:* **no visible global function definition for ‘is_hky_site_model’**
```r
  testit::assert(is_hky_site_model(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:91:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_site_model.R#L91) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:111:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_site_model.R#L111) *warning:* **no visible global function definition for ‘is_tn93_site_model’**
```r
  testit::assert(is_tn93_site_model(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:10:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_tree_prior.R#L10) *warning:* **no visible global function definition for ‘is_tree_prior’**
```r
  if (!is_tree_prior(x)) return(FALSE)
       ^~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:20:20:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_tree_prior.R#L20) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
    testit::assert(is_yule_tree_prior(x))
                   ^~~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:34:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_tree_prior.R#L34) *warning:* **no visible global function definition for ‘is_bd_tree_prior’**
```r
  testit::assert(is_bd_tree_prior(x))
                 ^~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:50:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_tree_prior.R#L50) *warning:* **no visible global function definition for ‘is_cbs_tree_prior’**
```r
  testit::assert(is_cbs_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:80:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_tree_prior.R#L80) *warning:* **no visible global function definition for ‘is_cep_tree_prior’**
```r
  testit::assert(is_cep_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~
```
[R/is_init_tree_prior.R:95:18:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_init_tree_prior.R#L95) *warning:* **no visible global function definition for ‘is_yule_tree_prior’**
```r
  testit::assert(is_yule_tree_prior(x))
                 ^~~~~~~~~~~~~~~~~~
```
[R/is_mcmc.R:34:8:](https://github.com/richelbilderbeek/beautier/blob/ed7709ad215f30d30bbc8a1ebed22802548237f0/R/is_mcmc.R#L34) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(x)) return(FALSE)
       ^~~~~~~
```


again, if user type "11111111@" all criteria will be met (valid) but there's no letter inside.


This failed 2nd LTC but I will try to refine the values later.


@64j to avoid compatibility issue with 3d party extras and to allow developers to move away from this library.


should I put break behind?


Work on this part next time


Is it a good idea to scale the ammo as well?
Now it will look different than 0.6 @oy


maybe better set to NO as default?


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @kizill was added to conda-forge. Welcome to conda-forge!
  Go to https://github.com/orgs/conda-forge/invitation see your invitation.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/conda-forge_gotchas.html#using-a-fork-vs-a-branch-when-updating-a-recipe)


oops, I read the document from [FFmpeg Core functions](https://ffmpeg.org/doxygen/3.1/group__lavf__core.html).
> AVOutputFormat* av_oformat_next	(	const AVOutputFormat * 	f	)
> If f is NULL, returns the first registered output format, if f is non-NULL, returns the next registered output format after f or NULL if f is the last one.

I initialize it to NULL for meet this requirement.


cc @MajkiIT-automat / @MajkiIT / @krystian3w / @hawkeye116477

`cookie-law-popup.js`


Oh, I didn't see it was used as parameter for `av_oformat_next()`, so :+1:


Pistol, Shotgun and Laser is ok.
Grenades are to big,


what statement should I put in to stop the program?


@.@
i cried*


it's okey ye can refer my P4Q4


Could this be published too ? :)


yes I will remove it after that


granades are quite big true


I want it read the first line as stored_username and second line as stored_password.


This can actually just be piped - `string replace | string trim` instead of `string trim (string replace)`.

It's mostly an aesthetic thing, though.


Successfully aliased the URL <https://spacemuffin-xjomkpgzyz.now.sh> to the following alias.

* https://spacemuffin.now.sh


no


Now could not deploy this pull request since it has no files other than the `now.json` file.


![](https://github.trello.services/images/mini-trello-icon.png) [Integração do maven no projecto.](https://trello.com/c/QgSRq46r/34-integra%C3%A7%C3%A3o-do-maven-no-projecto)


Should make the function so that the nums array doesn't start with any initial data.


![](https://github.trello.services/images/mini-trello-icon.png) [Consulta/resposta a posts do Facebook.](https://trello.com/c/q7LdG6Qo/28-consulta-resposta-a-posts-do-facebook)


![](https://github.trello.services/images/mini-trello-icon.png) [Ligação da API do Facebook com a interface gráfica.](https://trello.com/c/TPBZTtm7/10-liga%C3%A7%C3%A3o-da-api-do-facebook-com-a-interface-gr%C3%A1fica)


ok


Maybe the library's decision to use a given hash (of those enabled) should depend not only on its strength, but also on whether it's a hash that's currently in widespread use (with exception for yescrypt proper, which we knowingly just introduce to widespread use now). gost-yescrypt, sha1crypt, and SunMD5 are obscure - gost-yescrypt is for special use cases only (where Russian certification is needed), sha1crypt is essentially unused, and SunMD5 is for compatibility with existing hashes of this type (if someone is migrating from Solaris with custom configuration enabling those hashes). Maybe they shouldn't be part of the default fallback chain, or else we might cause their use in the wild to increase without real need.


'popup-menu' should be configured instead of hardcoded.
```
get popup() : PopupMenu {
   const targetId = this.getAttribute('target');
   return targetId && document.getElementById(targetId);
}
```


Clean code, thanks :-)


[tests/testthat/test-clock_models_to_xml_tracelog.R:35:1:](https://github.com/richelbilderbeek/beautier/blob/2cf75f9bfaee5551f61e37b4fc63f68ca92e300c/tests/testthat/test-clock_models_to_xml_tracelog.R#L35) *style:* **Lines should not be more than 80 characters.**
```r
    "<log id=\"rate.c:anthus_aco_sub\" spec=\"beast.evolution.branchratemodel.RateStatistic\" branchratemodel=\"@RelaxedClock.c:anthus_aco_sub\" tree=\"@Tree.t:anthus_aco_sub\"/>",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Hi @laurentalacoque

Thanks for the great extended version. Just a note: I had also to install  sudo pip install --upgrade oauth2client when setting it up.

Best wishes,
Hannes


Oh, I was confused by the re-ordering of the `md5crypt` and `sunmd5` lines. I now see that `sha1crypt` and `sunmd5` aren't marked `STRONG`, which per the comment means they won't be part of the default fallback chain. Then my concern only applies to gost-yescrypt.


Better to setup classes when we really attach element into DOM
-> connectedCallback


А тут можно вопросы писать к комментариям? Я когда думал, как сделать, подумал, что так немного нечестно, потому что третье значение мы задаём заранее, а не высчитываем, это ничего?


@jensens Jenkins CI reporting about code analysis
See the full report here: https://jenkins.plone.org/job/package-plone.caching/19/violations
```
plone/caching/hooks.py:39:49: Q000 Remove bad quotes.
plone/caching/hooks.py:81:22: C812 missing trailing comma
plone/caching/hooks.py:92:34: C812 missing trailing comma
plone/caching/hooks.py:115:22: C812 missing trailing comma
plone/caching/hooks.py:173:22: C812 missing trailing comma
plone/caching/hooks.py:214:18: C812 missing trailing comma
plone/caching/operations.py:30:15: Q000 Remove bad quotes.
plone/caching/operations.py:31:21: Q000 Remove bad quotes.
plone/caching/operations.py:50:30: C812 missing trailing comma
plone/caching/operations.py:60:47: C812 missing trailing comma
plone/caching/operations.py:75:30: C812 missing trailing comma
plone/caching/utils.py:39:21: C812 missing trailing comma
plone/caching/utils.py:118:27: C812 missing trailing comma
plone/caching/tests/test_hooks.py:190:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:212:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:534:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:558:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:852:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:936:28: C812 missing trailing comma
plone/caching/tests/test_hooks.py:942:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:991:28: C812 missing trailing comma
plone/caching/tests/test_hooks.py:997:35: C812 missing trailing comma
plone/caching/tests/test_hooks.py:1045:28: C812 missing trailing comma
plone/caching/tests/test_hooks.py:1051:35: C812 missing trailing comma
plone/caching/tests/test_operations.py:140:35: C812 missing trailing comma
plone/caching/tests/test_operations.py:151:35: C812 missing trailing comma
plone/caching/tests/test_operations.py:201:35: C812 missing trailing comma
plone/caching/tests/test_operations.py:213:35: C812 missing trailing comma
plone/caching/tests/test_utils.py:31:28: C812 missing trailing comma
plone/caching/tests/test_utils.py:42:28: C812 missing trailing comma
plone/caching/tests/test_utils.py:52:23: C812 missing trailing comma
plone/caching/tests/test_utils.py:59:28: C812 missing trailing comma
plone/caching/tests/test_utils.py:69:23: C812 missing trailing comma
plone/caching/tests/test_utils.py:73:24: C812 missing trailing comma
plone/caching/tests/test_utils.py:80:28: C812 missing trailing comma
plone/caching/tests/test_utils.py:123:19: C812 missing trailing comma
plone/caching/tests/test_utils.py:143:19: C812 missing trailing comma
plone/caching/tests/test_utils.py:147:19: C812 missing trailing comma
plone/caching/tests/test_utils.py:151:19: C812 missing trailing comma
plone/caching/tests/test_utils.py:171:19: C812 missing trailing comma
plone/caching/tests/test_utils.py:187:28: C812 missing trailing comma
```
Follow [these instructions](https://github.com/plone/jenkins.plone.org/blob/master/docs/source/run-qa-on-package.rst) to reproduce it locally.