[R/DAISIE_data.R:2:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:7:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:12:34:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
#' the following elements.\cr \cr
                                 ^
```
[R/DAISIE_data.R:47:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:52:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:92:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L92) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:96:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L96) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:103:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L103) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:124:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L124) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:27:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L125) *style:* **Trailing whitespace is superfluous.**
```r
#' for the Galapagos data.
                          ^
```
[R/DAISIE_data.R:127:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L127) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:158:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L158) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:161:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L161) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:165:42:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{$island_age} - the island age\cr
                                         ^
```
[R/DAISIE_data.R:197:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L197) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:247:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L247) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:256:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L256) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:270:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L270) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:277:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_data.R#L277) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:2:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:7:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:10:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:86:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_dataprep.R:87:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L87) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:88:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:89:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L89) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:90:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L91) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:98:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L98) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:100:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L100) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:100:82:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L100) *style:* **Trailing whitespace is superfluous.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
                                                                                ^
```
[R/DAISIE_dataprep.R:101:79:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L101) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:104:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L104) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:113:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L113) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:114:80:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L114) *style:* **Trailing whitespace is superfluous.**
```r
#' ### Create Galapagos data object with a distinct macroevolutionary processes
                                                                               ^
```
[R/DAISIE_dataprep.R:115:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L115) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:79:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L116) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:117:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L117) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L118) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:128:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L128) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Lines should not be more than 80 characters.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:17:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Use <-, not =, for assignment.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                ^
```
[R/DAISIE_dataprep.R:130:38:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                     ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:51:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                  ^
```
[R/DAISIE_dataprep.R:130:74:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                         ^
```
[R/DAISIE_dataprep.R:130:131:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                                ^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L131) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_dataprep.R:132:24:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L132) *style:* **Use <-, not =, for assignment.**
```r
  number_colonisations = nrow(datatable)
                       ^
```
[R/DAISIE_dataprep.R:133:12:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L133) *style:* **Use <-, not =, for assignment.**
```r
  datalist = list()
           ^
```
[R/DAISIE_dataprep.R:134:13:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L134) *style:* **Variable or function name should be snake_case.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:134:28:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L134) *style:* **Put spaces around all infix operators.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
                          ~^~~
```
[R/DAISIE_dataprep.R:135:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L135) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_dataprep.R:136:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L136) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 1)
    ^
```
[R/DAISIE_dataprep.R:137:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L137) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:138:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L138) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:138:19:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L138) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                  ^
```
[R/DAISIE_dataprep.R:138:36:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                  ~^~
```
[R/DAISIE_dataprep.R:138:48:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L138) *style:* **Commas should always have a space after.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                               ^
```
[R/DAISIE_dataprep.R:138:59:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                         ~^~
```
[R/DAISIE_dataprep.R:138:60:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L138) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                           ^
```
[R/DAISIE_dataprep.R:140:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L140) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 2)
    ^
```
[R/DAISIE_dataprep.R:141:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L141) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:142:32:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L142) *style:* **Use <-, not =, for assignment.**
```r
    number_type2_colonisations = length(list_type2_clades)
                               ^
```
[R/DAISIE_dataprep.R:143:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L143) *style:* **Lines should not be more than 80 characters.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:143:32:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L143) *style:* **Use <-, not =, for assignment.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
                               ^
```
[R/DAISIE_dataprep.R:145:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L145) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:146:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L146) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:146:25:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L146) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:146:41:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L146) *style:* **Put spaces around all infix operators.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:147:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L147) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:147:25:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L147) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:147:41:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L147) *style:* **Put spaces around all infix operators.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:149:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L149) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:149:25:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L149) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:150:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:150:25:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L150) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:152:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:19:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L152) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
                  ^
```
[R/DAISIE_dataprep.R:155:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L155) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:156:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:156:23:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                      ^
```
[R/DAISIE_dataprep.R:156:71:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                      ^
```
[R/DAISIE_dataprep.R:156:86:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:107:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:117:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:147:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:157:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L157) *style:* **Lines should not be more than 80 characters.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:157:14:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L157) *style:* **Use <-, not =, for assignment.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
             ^
```
[R/DAISIE_dataprep.R:157:77:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                            ^
```
[R/DAISIE_dataprep.R:157:97:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                                ^
```
[R/DAISIE_dataprep.R:158:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L158) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:159:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
      ^
```
[R/DAISIE_dataprep.R:159:21:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                   ~^~
```
[R/DAISIE_dataprep.R:159:33:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                ^
```
[R/DAISIE_dataprep.R:159:46:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:70:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                     ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~
```
[R/DAISIE_dataprep.R:159:92:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:117:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:132:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:132:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:160:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:163:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ~^~
```
[R/DAISIE_dataprep.R:159:164:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~
```
[R/DAISIE_dataprep.R:159:168:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L159) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:160:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L160) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:161:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L161) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(the_brts) == 1)
      ^
```
[R/DAISIE_dataprep.R:161:30:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L161) *style:* **Trailing whitespace is superfluous.**
```r
    if(length(the_brts) == 1)
                             ^
```
[R/DAISIE_dataprep.R:162:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L162) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:163:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L163) *style:* **Lines should not be more than 80 characters.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:163:41:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L163) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                        ^
```
[R/DAISIE_dataprep.R:163:56:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L163) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                                       ^
```
[R/DAISIE_dataprep.R:163:69:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L163) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                                                    ^
```
[R/DAISIE_dataprep.R:165:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L165) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(the_brts) > 1)
      ^
```
[R/DAISIE_dataprep.R:165:29:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
    if(length(the_brts) > 1)
                            ^~
```
[R/DAISIE_dataprep.R:166:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L166) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:167:41:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L167) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,the_brts)
                                        ^
```
[R/DAISIE_dataprep.R:167:56:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L167) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,the_brts)
                                                       ^
```
[R/DAISIE_dataprep.R:169:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L169) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Non_endemic_MaxAge")
      ^
```
[R/DAISIE_dataprep.R:169:20:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L169) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Non_endemic_MaxAge")
                   ^
```
[R/DAISIE_dataprep.R:170:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L170) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:171:30:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L171) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 1
                             ^
```
[R/DAISIE_dataprep.R:173:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L173) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Endemic")
      ^
```
[R/DAISIE_dataprep.R:173:20:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L173) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Endemic")
                   ^
```
[R/DAISIE_dataprep.R:174:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L174) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:175:30:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L175) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 2
                             ^
```
[R/DAISIE_dataprep.R:176:9:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L176) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if(max(the_brts)>island_age){
        ^
```
[R/DAISIE_dataprep.R:176:23:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L176) *style:* **Put spaces around all infix operators.**
```r
      if(max(the_brts)>island_age){
                     ~^~
```
[R/DAISIE_dataprep.R:177:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Lines should not be more than 80 characters.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:177:11:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
          ^
```
[R/DAISIE_dataprep.R:177:33:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                ^
```
[R/DAISIE_dataprep.R:177:45:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Only use double-quotes.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:177:61:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Commas should always have a space after.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                            ^
```
[R/DAISIE_dataprep.R:177:86:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Commas should always have a space after.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:177:101:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Commas should always have a space after.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:177:101:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Only use double-quotes.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:177:129:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Commas should always have a space after.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:177:132:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Put spaces around all infix operators.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ~^~
```
[R/DAISIE_dataprep.R:177:133:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Only use double-quotes.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ^~
```
[R/DAISIE_dataprep.R:177:137:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L177) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
        if(length(the_brts) > 1){stop(paste('Radiation of ',as.character(datatable[i,"Clade_name"]),' is older than the island',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:178:11:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L178) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        if(length(the_brts) == 1){datalist[[i + 1]]$stac = 5}
          ^
```
[R/DAISIE_dataprep.R:178:34:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L178) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        if(length(the_brts) == 1){datalist[[i + 1]]$stac = 5}
                                 ^
```
[R/DAISIE_dataprep.R:178:58:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L178) *style:* **Use <-, not =, for assignment.**
```r
        if(length(the_brts) == 1){datalist[[i + 1]]$stac = 5}
                                                         ^
```
[R/DAISIE_dataprep.R:178:61:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L178) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
        if(length(the_brts) == 1){datalist[[i + 1]]$stac = 5}
                                                            ^
```
[R/DAISIE_dataprep.R:181:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L181) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Endemic&Non_endemic")
      ^
```
[R/DAISIE_dataprep.R:181:20:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L181) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Endemic&Non_endemic")
                   ^
```
[R/DAISIE_dataprep.R:182:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L182) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:183:30:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L183) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 3
                             ^
```
[R/DAISIE_dataprep.R:185:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L185) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Non_endemic")
      ^
```
[R/DAISIE_dataprep.R:185:20:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L185) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Non_endemic")
                   ^
```
[R/DAISIE_dataprep.R:186:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L186) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:187:30:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L187) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 4
                             ^
```
[R/DAISIE_dataprep.R:188:9:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L188) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if(max(the_brts)>island_age){datalist[[i + 1]]$stac = 1}
        ^
```
[R/DAISIE_dataprep.R:188:23:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L188) *style:* **Put spaces around all infix operators.**
```r
      if(max(the_brts)>island_age){datalist[[i + 1]]$stac = 1}
                     ~^~
```
[R/DAISIE_dataprep.R:188:35:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L188) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
      if(max(the_brts)>island_age){datalist[[i + 1]]$stac = 1}
                                  ^
```
[R/DAISIE_dataprep.R:188:59:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L188) *style:* **Use <-, not =, for assignment.**
```r
      if(max(the_brts)>island_age){datalist[[i + 1]]$stac = 1}
                                                          ^
```
[R/DAISIE_dataprep.R:188:62:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L188) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
      if(max(the_brts)>island_age){datalist[[i + 1]]$stac = 1}
                                                             ^
```
[R/DAISIE_dataprep.R:190:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L190) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Endemic_MaxAge")
      ^
```
[R/DAISIE_dataprep.R:190:20:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L190) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Endemic_MaxAge")
                   ^
```
[R/DAISIE_dataprep.R:191:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L191) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:192:30:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L192) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 5
                             ^
```
[R/DAISIE_dataprep.R:194:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L194) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number_clade_types == 2)
      ^
```
[R/DAISIE_dataprep.R:195:5:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L195) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:196:9:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L196) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if(length(which(list_type2_clades == datatable[i,"Clade_name"])) > 0)
        ^
```
[R/DAISIE_dataprep.R:196:56:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L196) *style:* **Commas should always have a space after.**
```r
      if(length(which(list_type2_clades == datatable[i,"Clade_name"])) > 0)
                                                       ^
```
[R/DAISIE_dataprep.R:197:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L197) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
      {
      ^
```
[R/DAISIE_dataprep.R:198:36:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_dataprep.R#L198) *style:* **Use <-, not =, for assignment.**
```r
        datalist[[i + 1]]$type1or2 = 2
                                   ^
```
[R/DAISIE_ExpEIN.R:2:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:6:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:7:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:27:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:28:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Compute the expected values at t = 4, for a mainland pool size of 1000 potential
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:29:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
#' # colonists and a vector of 5 parameters (cladogenesis, extinction, clade-level carrying
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:31:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_ExpEIN.R:37:3:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:39:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
^~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:39:15:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Use <-, not =, for assignment.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
              ^
```
[R/DAISIE_ExpEIN.R:39:28:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Commas should always have a space after.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
                           ^
```
[R/DAISIE_ExpEIN.R:39:33:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Commas should always have a space after.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
                                ^
```
[R/DAISIE_ExpEIN.R:39:33:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
                                ^
```
[R/DAISIE_ExpEIN.R:39:35:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Commas should always have a space after.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
                                  ^
```
[R/DAISIE_ExpEIN.R:39:35:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
                                  ^~~~~~
```
[R/DAISIE_ExpEIN.R:39:48:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L39) *style:* **Commas should always have a space after.**
```r
DAISIE_ExpEIN = function(t,pars,M,initEI = c(0,0))
                                               ^
```
[R/DAISIE_ExpEIN.R:40:1:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L40) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_ExpEIN.R:41:10:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L41) *style:* **Use <-, not =, for assignment.**
```r
   pars1 = pars
         ^
```
[R/DAISIE_ExpEIN.R:42:8:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L42) *style:* **Use <-, not =, for assignment.**
```r
   lac = pars1[1]
       ^
```
[R/DAISIE_ExpEIN.R:43:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L43) *style:* **Use <-, not =, for assignment.**
```r
   mu = pars1[2]
      ^
```
[R/DAISIE_ExpEIN.R:44:7:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L44) *style:* **Use <-, not =, for assignment.**
```r
   ga = pars1[4]
      ^
```
[R/DAISIE_ExpEIN.R:45:8:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L45) *style:* **Use <-, not =, for assignment.**
```r
   laa = pars1[5]
       ^
```
[R/DAISIE_ExpEIN.R:46:6:](https://github.com/rsetienne/DAISIE/blob/ff009d4f052c3f97d47a70c2698bc08e37d61721/R/DAISIE_ExpEIN.R#L46) *style:* **Place a space before left parenthesis, except in a function call.**
```r
   if(!is.na(pars1[11]))
     ^
```


You are pushing commits at a very fast pace (accross the whole organization).
Due to that, we cannot deploy the commit f3e9272b54c82cd943e710e30cc20f66ef03a7dd.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


You are pushing commits at a very fast pace (accross the whole organization).
Due to that, we cannot deploy the commit 25bc03d3c2dd5106c17c3a93658338d0a1d1afa3.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


first ocmmit


Seems like [laravel/framework#views](https://github.com/laravel/framework/commits/5.8/src/Illuminate/Foundation/Exceptions/views) now use a minimal layout for some reason (I don't seem to be able to track down the reason for the change), so no need for the svgs in here

![image](https://user-images.githubusercontent.com/6738779/53553038-0423a700-3b3d-11e9-9029-4c4276652a45.png)

Still customisable when you `vendor:publish --tag=laravel-errors` and changing the views namespace to `errors::illustrated-layout`, but, of course, those are missing the svgs now and look a bit off. Granted, you can edit them now, so shouldn't be hard to re-add them.


P100 should use 64.


bitshares-ui release v2.0.190227


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 231-r1738893](https://teamcity.nice.org.uk/viewLog.html?buildId=50525&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **SUCCESS**
Summary: Tests passed: 1 Build time: 00:10:23


see: https://github.com/openmicroscopy/openmicroscopy/pull/5964


왜 수정했는지?
무슨 의도?


add neo.hello's properties equeals dev


neo.hello=dev


Now could not deploy this pull request since the `now.json` file does not contain valid JSON.

	Click here to see the contents of `now.json`

{
  "version": 2,
  "public": true,
  "name": "weco",
  "build": [
    {
      "src": "packages/next-main/package.json",
      "use": "@now/next@canary"
    },
    {
      "src": "packages/next-blog/package.json",
      "use": "@now/next@canary"
    },
  ]
}

For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.


@analogina добавь отладочный вывод - что на каком шаге у тебя получается!


Successfully aliased the URL <https://website-hrlwqoggbi.now.sh> to the following aliases.

* https://ko.parceljs.org
* https://pt.parceljs.org
* https://zh.parceljs.org
* https://parceljs.org
* https://pl.parceljs.org
* https://ru.parceljs.org
* https://en.parceljs.org
* https://es.parceljs.org
* https://fr.parceljs.org
* https://it.parceljs.org
* https://uk.parceljs.org
* https://zh-tw.parceljs.org
* https://ja.parceljs.org


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 232-r1738893](https://teamcity.nice.org.uk/viewLog.html?buildId=50526&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **UNKNOWN**
Summary: Canceled (Tests passed: 1; unable to create or deploy release. Please check the build log for details on the error. (new)) Build time: 00:03:14


This is great ❤


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 217-IDAM-52-Build-fix](https://teamcity.nice.org.uk/viewLog.html?buildId=50527&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **SUCCESS**
Summary: Tests passed: 8 Build time: 00:02:05


@PeterDaveHello Will @PeterBot back-fill previous versions?


In the course of testing, it is improved in the later stage.


This should use a placeholder variable in the message so that translators can reorder the words. I have seen those placeholders used in other messages you have.


gjjghjpj


Why did you remove this line ?


> Note: the title is 76 chars long, but still goes over. I'll stick with a max of 70 from now on to be safe.
Don't worry too much about being strict on this - just use it as a general guideline of roughly how long a title should be rather than a hard character limit. No one uses 80 character terminals here, and we don't mind if it overflows a little.

> NVAPI: Rework commit 27bf496 for whitespace error removals and code c…
In future I'd probably avoid including a commit sha inside the title - the title is supposed to be something that we tell at a glance what the commit is generally for, but a sha needs an extra look up to determine what it refers to. Also, be wary of using shortened git shas, since they can become ambiguous in the future if another commit happens to start with the same prefix - seven characters will probably be fine for the forseable future, but could collide with something eventually (we currently have collisions up to five characters, my 3d-fixes repo has collisions up to 6 and the Linux Kernel has collisions up to 9).

You can reference the sha inside the body of the commit message, but you should include some more context so someone can identify the commit even without the sha - this would typically include the referenced commit's title and sometimes a bit more. e.g. this recent revert I made includes the original commit title in its title, and references the original commit's sha in the body (this is a standard template when using the `git revert` command): https://github.com/bo3b/3Dmigoto/commit/2e8ea88f23978294347fb43dd9ea5143a82fd43b

e.g. In this commit I referenced another commit that had introduced a regression. Since this is a more serious case it includes more context of the original commit and includes the title, sha, author and date of the original commit (basically everything from `git show` except the commit message body). These are indented to distinguish them from the commit message I was writing to address the regression:
https://github.com/bo3b/3Dmigoto/commit/b16d1d451fc45f466c6b19d1764bec5dcf8b9dd9

With a quick google I found this article that sums up how to write a good commit message (and why):
https://chris.beams.io/posts/git-commit/

Again though - I must stress that these are all guidelines and we don't have any hard rules in this repository (e.g. we have not adopted a formal coding style), though we do have a strong preference for things to be readable, and of course we have our own personal preferences (mine is heavily influenced by my Linux Kernel background, but their coding style is optimised for C and some of their rules are detrimental when applied to C++), so as long as we can read the code we will be happy - if there are any specific issues we will raise them as they come up (and these are all up for debate).

> My commit ended up sandwiched between c6402b and 0ce061 instead of being after 6aecdc. I'm not sure why since I had fetched from master shortly before committing. I'm not sure which is wrong: my rebase or the commit history.

That's easy enough to explain - I pushed up 0ce06156a3ad7e2b0b28d59b10738f5493a72efb and 6aecdc0498576eb60581df92c21eae69531a7147 shortly after you pushed this.


# Try this logic
- 1st star ==> **All needs to be false** or **star2 to star4 needs to be false**
- 2nd star ==> **star3 and 4 false or star1 is true**
- 3rd star ==> **star1 and star2 is true or star4 is false**
- 4th star ==> **star1 and star2 and 3 is true or all star true**