[R/are_clock_models.R:17:7:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/are_clock_models.R#L17) *warning:* **no visible global function definition for ‘check_clock_models’**
```r
      check_clock_models(x)
      ^~~~~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:3:41:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/are_mrca_taxa_non_intersecting.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' is, there are no taxa that intersect.
                                        ^
```
[R/check_clock_model.R:38:5:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/check_clock_model.R#L38) *warning:* **no visible global function definition for ‘check_strict_clock_model’**
```r
    check_strict_clock_model(clock_model)
    ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/check_clock_model.R:41:5:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/check_clock_model.R#L41) *warning:* **no visible global function definition for ‘check_rln_clock_model’**
```r
    check_rln_clock_model(clock_model)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_file.R:17:12:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/create_beast2_input_file.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#' @seealso
           ^
```
[R/create_beast2_input.R:4:12:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/create_beast2_input.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
#' @seealso
           ^
```
[R/has_xml_closing_tag.R:1:58:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/has_xml_closing_tag.R#L1) *style:* **Trailing whitespace is superfluous.**
```r
#' Is an XML closing tag with the value of \code{section}
                                                         ^
```
[R/is_clock_model.R:39:7:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/is_clock_model.R#L39) *warning:* **no visible global function definition for ‘check_rln_clock_model’**
```r
      check_rln_clock_model(x)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:64:7:](https://github.com/ropensci/beautier/blob/881d288b13e1f49b6adb51d79e484ec397814ba2/R/is_clock_model.R#L64) *warning:* **no visible global function definition for ‘check_strict_clock_model’**
```r
      check_strict_clock_model(x)
      ^~~~~~~~~~~~~~~~~~~~~~~~
```


Makes sense, approved @wpscholar


Approved @wpscholar


Much easier to read, approved @wpscholar


You really don't want `Object.assign()`, that mutates the current value of the `BehaviorSubject` in place.
Just `next({...current, ...diff})`.


Not sure if this commit broke something, but I am not getting this error with this most recent commit:

![image](https://user-images.githubusercontent.com/25160592/52870428-7217a980-310d-11e9-859f-c3c1f363a533.png)

any help trouble shooting this error would be appreciated.


Much cleaner, approved @wpscholar


Page completed by adding colors to the middle content boxes. @jheinz1999


@krystian3w `https://github.com/PolishFiltersTeam/KADhosts/blob/master/sections/hostsplus.txt`
No, rapshare można dodać, nawet Google ostrzega, ale to już od razu do listy filtrów :smile:.


All looks good here, approved @wpscholar


We should try using this


Fixes build error: use of undeclared identifier 'IPPROTO_TCP'


I've reverted this commit (1d3610a783416aab9617a3af5a0b27a1e97e6abc). It generates invalid Crucible CFGs, which cause serious problems for downstream clients (like bad code generation).


Successfully aliased the URL <https://ofd-site-eylcsftwad.now.sh> to the following alias.

* https://www.onefinaldoc.com


This test fails to compile:

evaluate.cpp:615:22: note: suggested alternative: ‘ThreatByBishop’
             score += threatByBishop[type_of(pos.piece_on(s))][2];
                      ^~~~~~~~~~~~~~
                      ThreatByBishop
make[2]: *** [<builtin>: evaluate.o] Error 1


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @tadeu was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/conda-forge_gotchas.html#using-a-fork-vs-a-branch-when-updating-a-recipe)


## Global

| Changed         |   Status |
|:----------------|---------:|
| `coverage`      |     4.08 |
| `nodes_count`   |  3564    |
| `texts_passing` |    48    |
| `texts_total`   |   -49    |

## Words

| Changed   |   Status |
|:----------|---------:|
| `eng`     |  +340842 |
| `grc`     |       -1 |

## Units

| Changed                                                 | Status   |
|:--------------------------------------------------------|:---------|
| `./data/tlg0014/tlg001/tlg0014.tlg001.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg002/tlg0014.tlg002.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg003/tlg0014.tlg003.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg004/tlg0014.tlg004.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg005/tlg0014.tlg005.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg006/tlg0014.tlg006.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg007/tlg0014.tlg007.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg008/tlg0014.tlg008.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg009/tlg0014.tlg009.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg010/tlg0014.tlg010.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg011/tlg0014.tlg011.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg012/tlg0014.tlg012.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg013/tlg0014.tlg013.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg014/tlg0014.tlg014.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg015/tlg0014.tlg015.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg016/tlg0014.tlg016.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg017/tlg0014.tlg017.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg018/tlg0014.tlg018.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg019/tlg0014.tlg019.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg020/tlg0014.tlg020.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg021/tlg0014.tlg021.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg022/tlg0014.tlg022.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg023/tlg0014.tlg023.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg024/tlg0014.tlg024.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg025/tlg0014.tlg025.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg026/tlg0014.tlg026.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg027/tlg0014.tlg027.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg028/tlg0014.tlg028.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg029/tlg0014.tlg029.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg030/tlg0014.tlg030.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg031/tlg0014.tlg031.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg032/tlg0014.tlg032.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg033/tlg0014.tlg033.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg034/tlg0014.tlg034.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg035/tlg0014.tlg035.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg036/tlg0014.tlg036.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg037/tlg0014.tlg037.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg038/tlg0014.tlg038.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg039/tlg0014.tlg039.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg040/tlg0014.tlg040.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg041/tlg0014.tlg041.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg042/tlg0014.tlg042.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg043/tlg0014.tlg043.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg044/tlg0014.tlg044.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg045/tlg0014.tlg045.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg046/tlg0014.tlg046.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg047/tlg0014.tlg047.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg048/tlg0014.tlg048.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg049/tlg0014.tlg049.perseus-eng1.xml` | Deleted  |
| `./data/tlg0014/tlg001/tlg0014.tlg001.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg002/tlg0014.tlg002.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg003/tlg0014.tlg003.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg004/tlg0014.tlg004.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg005/tlg0014.tlg005.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg006/tlg0014.tlg006.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg007/tlg0014.tlg007.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg008/tlg0014.tlg008.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg009/tlg0014.tlg009.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg010/tlg0014.tlg010.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg011/tlg0014.tlg011.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg012/tlg0014.tlg012.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg013/tlg0014.tlg013.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg014/tlg0014.tlg014.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg015/tlg0014.tlg015.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg016/tlg0014.tlg016.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg017/tlg0014.tlg017.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg018/tlg0014.tlg018.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg019/tlg0014.tlg019.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg020/tlg0014.tlg020.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg021/tlg0014.tlg021.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg022/tlg0014.tlg022.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg023/tlg0014.tlg023.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg024/tlg0014.tlg024.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg025/tlg0014.tlg025.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg026/tlg0014.tlg026.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg027/tlg0014.tlg027.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg028/tlg0014.tlg028.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg029/tlg0014.tlg029.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg030/tlg0014.tlg030.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg032/tlg0014.tlg032.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg033/tlg0014.tlg033.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg034/tlg0014.tlg034.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg035/tlg0014.tlg035.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg036/tlg0014.tlg036.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg037/tlg0014.tlg037.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg038/tlg0014.tlg038.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg039/tlg0014.tlg039.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg040/tlg0014.tlg040.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg041/tlg0014.tlg041.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg042/tlg0014.tlg042.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg043/tlg0014.tlg043.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg044/tlg0014.tlg044.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg045/tlg0014.tlg045.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg046/tlg0014.tlg046.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg047/tlg0014.tlg047.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg048/tlg0014.tlg048.perseus-eng2.xml` | Passing  |
| `./data/tlg0014/tlg049/tlg0014.tlg049.perseus-eng2.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-greekLit/4756)*


[R/are_clock_models.R:17:7:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/are_clock_models.R#L17) *warning:* **no visible global function definition for ‘check_clock_models’**
```r
      check_clock_models(x)
      ^~~~~~~~~~~~~~~~~~
```
[R/are_mrca_taxa_non_intersecting.R:3:41:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/are_mrca_taxa_non_intersecting.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' is, there are no taxa that intersect.
                                        ^
```
[R/check_clock_model.R:38:5:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/check_clock_model.R#L38) *warning:* **no visible global function definition for ‘check_strict_clock_model’**
```r
    check_strict_clock_model(clock_model)
    ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/check_clock_model.R:41:5:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/check_clock_model.R#L41) *warning:* **no visible global function definition for ‘check_rln_clock_model’**
```r
    check_rln_clock_model(clock_model)
    ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_file.R:17:12:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/create_beast2_input_file.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#' @seealso
           ^
```
[R/create_beast2_input.R:4:12:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/create_beast2_input.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
#' @seealso
           ^
```
[R/has_xml_closing_tag.R:1:58:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/has_xml_closing_tag.R#L1) *style:* **Trailing whitespace is superfluous.**
```r
#' Is an XML closing tag with the value of \code{section}
                                                         ^
```
[R/is_clock_model.R:39:7:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/is_clock_model.R#L39) *warning:* **no visible global function definition for ‘check_rln_clock_model’**
```r
      check_rln_clock_model(x)
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model.R:64:7:](https://github.com/ropensci/beautier/blob/7509ec32e10065ee7112c72bb623de34032496f1/R/is_clock_model.R#L64) *warning:* **no visible global function definition for ‘check_strict_clock_model’**
```r
      check_strict_clock_model(x)
      ^~~~~~~~~~~~~~~~~~~~~~~~
```


hi


hdfhyty hst


Created multidev environment [ecrac#ci-275](https://dashboard.pantheon.io/sites/1291b6c7-9029-4c6d-867f-caf641f6fade#ci-275).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-275-ecrac.pantheonsite.io/)


dsfsfd


@chirichok98
fixed


Hi! I couldn't realize the better solution for passing tests. Please show me one.


Added mlk.


You might be interested in a recent internal/experimental `git --list-cmds`


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 197-IDAM-116-Https-confi](https://teamcity.nice.org.uk/viewLog.html?buildId=49949&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **SUCCESS**
Summary: Tests passed: 1 Build time: 00:04:47


thanks!


[R/mbd_loglik_utils.R:2:1:](https://github.com/Giappo/mbd/blob/073b9003c21da3a7642f76246e801e1481c15e1f/R/mbd_loglik_utils.R#L2) *style:* **Variable or function name should be snake_case.**
```r
myTryCatch <- function(expr) {
^~~~~~~~~~
```
[R/mbd_loglik_utils.R:80:1:](https://github.com/Giappo/mbd/blob/073b9003c21da3a7642f76246e801e1481c15e1f/R/mbd_loglik_utils.R#L80) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/mbd_loglik_utils.R:84:24:](https://github.com/Giappo/mbd/blob/073b9003c21da3a7642f76246e801e1481c15e1f/R/mbd_loglik_utils.R#L84) *style:* **Trailing whitespace is superfluous.**
```r
    result <- out$value
                       ^~
```
[R/mbd_utils.R:13:28:](https://github.com/Giappo/mbd/blob/073b9003c21da3a7642f76246e801e1481c15e1f/R/mbd_utils.R#L13) *style:* **Trailing whitespace is superfluous.**
```r
#' @return loglik functions
                           ^
```


Upstream issue: https://github.com/vmg/rinku/issues/84


great work make sure if you haven't to make a pull request


A jak działa ten plik hostsplus?


Successfully aliased the URL <https://ofd-site-bplxnbwltv.now.sh> to the following alias.

* https://www.onefinaldoc.com


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/logster-2-1-0-causes-segfault-running-unicorn-in-discourse-dev-docker-image/109265/1


Fixed division by zero error


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


This statement should come after the last `use` statement in case the xdebug is loaded, you'll need the autoload to have happened to instantiate XdebugHandler. BTW, thanks for doing this so quickly!


Ok


Why this step? Doesn't this make the dims mismatch with the later Gaussian and closing?


@kburns does this script make sense? I am just loading the data at a particular time step indicated by "ind" and then doing the transform on that.


TeamCity HearThis / HearThis pull requests [Build *.*.86.d331d7092166e78cd2bfc348317dd50d0303f3bb](http://build.palaso.org/viewLog.html?buildId=141209&buildTypeId=HearThis_HearThisPullRequests) outcome was **SUCCESS**
Summary: Running Build time: 00:01:33


It might be easier to test if you extra the logic that picks the client into a separate method, perhaps on `User` that looks something like:

```ruby
def comment_client(comment)
  if user.app_token.present? && comment.subject.repository.commentable?
    user.app_installation_client
  else
    github_client
  end
end
```

Then you can write a couple tests like:

"for user with an app_token, commenting on a commentable repo uses app_installation_client"
"for user without an app_token, commenting on a commentable repo uses github_client"
"for user with an app_token, commenting on a non-commentable repo uses github_client"

Then in each test, you can assert the return value of `user.comment_client(comment)` to be either `user.github_client` or `user.app_installation_client`


@Marxsal
Thanks


looks good great work,


oh is this the reverse of rechunck_image?


Yeah I think it generally looks right.  I think the forward phi transform needs to be placed before the forward theta transform, though (phi is longitude, theta is colatitude).


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 198-IDAM-116-Https-confi](https://teamcity.nice.org.uk/viewLog.html?buildId=49950&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **SUCCESS**
Summary: Tests passed: 1 Build time: 00:04:49


*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-latinLit/4757)*


*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-pdlpsci/4758)*


Sprint 1 sin base de datos


great job and those three words i think apply for most of us here at lambda :D


also seeing this issue when trying to run on IIS Express:

![image](https://user-images.githubusercontent.com/25160592/52871832-92953300-3110-11e9-90d4-e606ce181a73.png)

Something seems to be wrong with this build.


@krystian3w Normalnie, trzeba podać w formacie `0.0.0.0 domena.pl`, to jest taka dodatkowa sekcja tylko dla hosts :smile:.


Successfully aliased the URL <https://design-docs-ncybpa3g4.now.sh> to the following alias.

* https://aaptiv.design


Fixed showing remaining time amount text, popup now disappears after some time.


[R/est_marg_liks_from_models.R:113:1:](https://github.com/richelbilderbeek/mcbette/blob/639055cfbac4a3539a200ac107cc39ce690a3711/R/est_marg_liks_from_models.R#L113) *style:* **Lines should not be more than 80 characters.**
```r
        paste0("Log evidence for model ", i, "/", n_rows, ": ", marg_log_liks[i])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-est_marg_liks_from_models.R:14:1:](https://github.com/richelbilderbeek/mcbette/blob/639055cfbac4a3539a200ac107cc39ce690a3711/tests/testthat/test-est_marg_liks_from_models.R#L14) *style:* **Lines should not be more than 80 characters.**
```r
  beast2_options <- beastier::create_beast2_options(beast2_path = beastier::get_default_beast2_bin_path())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Ale co w nim jest takiego na ":heavy_plus_sign:" i w tym wypadku raczej nie ma co dodać jak na moje chyba, że blokujemy padnięte serwisy darmowych hostingów czy coś.


TeamCity HearThis / HearThis pull requests [Build *.*.87.7e62b61ef4bb161772a4d96eaa82d279073c74c8](http://build.palaso.org/viewLog.html?buildId=141212&buildTypeId=HearThis_HearThisPullRequests) outcome was **SUCCESS**
Summary: Running Build time: 00:00:58


[R/est_marg_liks_from_models.R:113:1:](https://github.com/richelbilderbeek/mcbette/blob/d396b6a8bbbe6b95d9c63d567ee378fc2966907f/R/est_marg_liks_from_models.R#L113) *style:* **Lines should not be more than 80 characters.**
```r
        paste0("Log evidence for model ", i, "/", n_rows, ": ", marg_log_liks[i])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-est_marg_liks_from_models.R:14:1:](https://github.com/richelbilderbeek/mcbette/blob/d396b6a8bbbe6b95d9c63d567ee378fc2966907f/tests/testthat/test-est_marg_liks_from_models.R#L14) *style:* **Lines should not be more than 80 characters.**
```r
  beast2_options <- beastier::create_beast2_options(beast2_path = beastier::get_default_beast2_bin_path())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


I don't know why we keep running these "tuning sessions" where the developer doesn't even bother to check if his work compiles.

@31m059 please stop this test since @Alayan-stk-2 doesn't seem to bother that it's keeping dozens of workers in a compile error loop.


@anatolip-rt Thanks!  Done in https://github.com/google/transit/commit/7d01582aab2d4db3502b7007d8494ab15f14638f.


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/auto-add-permissions-unsaved-permissions-prompt/100919/13


## Global

| Changed         |   Status |
|:----------------|---------:|
| `coverage`      |     1.67 |
| `texts_passing` |     1    |

## Units

| Changed                                             | Status   |
|:----------------------------------------------------|:---------|
| `./data/bodin/livrep/bodin.livrep.perseus-eng1.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-pdlpsci/4759)*


I do apologize, but I don't think I can approve this VLTC test with full throughput--it will quickly take over the entire framework.
http://tests.stockfishchess.org/tests/view/5c66eca40ebc5925cffc2c4a

Since the TC is 12 times longer than STC, I have reduced the throughput to 3000 / 12 = 250.  This is in line with guidelines for high-TC tuning and speculative LTC.  (To my understanding, this is a speculative VLTC, because Elo gain has not been demonstrated at lower TC.  Please correct me if I am mistaken.)


Created multidev environment [d8-digital-stlawu#ci-406](https://dashboard.pantheon.io/sites/9f185cec-9c0b-4fcb-972f-9a5f2f6ed252#ci-406).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-406-d8-digital-stlawu.pantheonsite.io/)


[Zamkotowicz - Risk _2-11.pdf](https://github.com/Zonk3/Subfolder_test/files/2870071/Zamkotowicz.-.Risk._2-11.pdf)


bien!


test


Zaujimavo si sa vynasiel tym, ze vracias `Observable` a nie priamo hodnotu :+1: (povodne zadanie tak nejak predpokladalo ze to budes "rozbalovat", kazdopadne takto je to rozhodne univerzalnejsie)


我看用vnpy的国内期货玩家有不少，那这段逻辑是不是不合适啊？
不过内盘期货tick数据应该都有涨跌停价。


je dobrym zvykom si deklarovat interface pre to ako vypada state, ale chapem ze si to zrejme pouzil iba tu, takze to nieje chyba. Do buducna by to ale bolo vhodne.


inverse-model (mjwitte) - Win64-Windows-7-VisualStudio-14: OK (3107 of 3109 tests passed, 0 test warnings)

Failures:

EnergyPlusFixture Test Summary
 * Passed: 726
 * Failed: 2

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.94%25-yellow.png)


### [Codacy](https://app.codacy.com/app/kipyin/pokemaster/commit?cid=323686894) detected an issue:
#### Message: `Else clause on loop without a break statement`

#### Currently on:
+ **Commit**:  c542f64a318df4d2eedebbf7cbb0a52ebe6e7e4f
+ **File**:    [pokemaster/_database.py](https://github.com/kipyin/pokemaster/blob/c542f64a318df4d2eedebbf7cbb0a52ebe6e7e4f/pokemaster/_database.py)
+ **LineNum**: [168](https://github.com/kipyin/pokemaster/blob/c542f64a318df4d2eedebbf7cbb0a52ebe6e7e4f/pokemaster/_database.py#L168)


You are pushing commits at a very fast pace (accross the whole organization).
Due to that, we cannot deploy the commit 634520b5aaaa564875d2ae5da3ec8eedc3e85cfb.

You can try again later or [upgrade](https://zeit.co/teams/zeit/settings/plan) your plan.


the problem has dissappeared forever. thanks


Why are you adding comments in your code? This is not acceptable!


Successfully aliased the URL <https://graphical-password-scheme-evaluation-ef18vy5j4.now.sh> to the following alias.

* https://gpa-evaluation.now.sh


@chfsx Sorry, `is_iterable()` does not work with PHP 7.0, here #1532 1532 is a fix.


@krystian3w No np `czas-na-fb.blogspot.com` można dodać. Hosts nie obsługuje regexu, także takie przypadki mogą tam trafiać.


tu robis `subscribe` k state aby si ziskal hodnotu ale nizsie znovu vytvaras observable. Rozumnejsie by bolo pouzit namiesto subscribe operator `map` v `pipe` funkcii.

Nastava tu jedna chyba memory leak pretoze sa pri "destroy" pipy nijak nezbavis subscription.


@gvreuls Thank you for noticing and notifying me.  I have stopped the test.


Don't know if its a good idea to remove the `MBED_ASSERT` https://os.mbed.com/docs/mbed-os/v5.11/apis/assert.html


And where are the output files?


<!DOCTYPE html>


请教一个问题，我看海龟策略代码，止损用了停止单，应该需要tick级的数据回测吧？为啥只有日线数据呢？


I don't love "side panel" unless its consistent everywhere in the product.  What about "inspection view", "inspectional panel", or just cut the gordium knot and name this heading "Container Logs", avoiding unnecessary naming?


tento for je pomerne komplexny na porozumenie a deje sa tam na oko pomerne dost veci, myslis ze by si skusil ho prepisat za pomoci `map`, `filter`, a `reduce`?
https://medium.com/poka-techblog/simplify-your-javascript-use-map-reduce-and-filter-bd02c593cc2d


Successfully aliased the URL <https://design-docs-q34vxlssw.now.sh> to the following alias.

* https://aaptiv.design


@Alayan-stk-2 Your variables are declared **T**hreatByBishop, etc. but you invoke them as **t**hreatByBishop, etc.  Note the first letter.


class memo
{//attributes or instance variable
  int n;
  String s;
  // methods
  sum(int n){
    print(2*n);
  }
  //constructor
  memo(String s)
  {
    this.s=s;
  }

}
void main() {  String f="frtye";
             //defining object
  var a=new memo(f);
  int x=4;
//using object
  a.n=x;
  a.s=f;
  a.sum(x);
             print(a.s);

  }


Result of Integration 1
---
_Duration_: One minute, 5 seconds
_Result_: **Perfect build**! All 44 tests passed. 👍
_Test Coverage_: 80%


Successfully aliased the URL <https://graphical-password-scheme-evaluation-8lhasb9w8.now.sh> to the following alias.

* https://gpa-evaluation.now.sh


Now could not deploy this pull request since the `now.json` file does not contain valid JSON.

	Click here to see the contents of `now.json`

{
  "version": 2,
  "alias": "app.andrew-worcester.com",
  "builds": [{
    "src": "./package.json",
    "use": "@now/static-build"
  }],
}

For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 199-IDAM-116-Https-confi](https://teamcity.nice.org.uk/viewLog.html?buildId=49952&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **SUCCESS**
Summary: Tests passed: 1 Build time: 00:04:51


дублируется, можно написать перед if-ом


breaks sticky footer.
Maybe use different implementation of this is causing issues?


> Robz, you should just straight up make a new discord account and use that one for now (sorry for writing this here)

Or he can leave Discord altogether. How long is the song and dance game going to go on for?


Should this be done on the Ruby backend? Rather then adding more knowledge here?


## Global

| Changed         |   Status |
|:----------------|---------:|
| `coverage`      |     1.67 |
| `texts_passing` |     1    |

## Units

| Changed                                             | Status   |
|:----------------------------------------------------|:---------|
| `./data/bodin/livrep/bodin.livrep.perseus-eng1.xml` | Passing  |

*[Hook UI build recap](http://ci.perseids.org/repo/PerseusDL/canonical-pdlpsci/4760)*


> Should this be done on the Ruby backend? Rather then adding more knowledge here?

I don't think it should be done in Ruby. If we start with clean data in the DB, that's better than cleaning it on the way out.


fixed in https://github.com/cryptiumlabs/backerei/pull/31


FYI particles are included in the GM project


done


Created multidev environment [ecrac#ci-277](https://dashboard.pantheon.io/sites/1291b6c7-9029-4c6d-867f-caf641f6fade#ci-277).

[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-277-ecrac.pantheonsite.io/)


I could have written it better... function repeat(operation, num) {
if (num <= 0); return
operation()
return repeat(operation, --n)
}
Module.exports = repeat


Why such a change?


Successfully aliased the URL <https://graphical-password-scheme-evaluation-esuh9b2p9.now.sh> to the following alias.

* https://gpa-evaluation.now.sh


Sorry about that, I've been trying to do smaller Chris-style commits (but obv not this one)


This if statement doesn't do anything. You might as well just set dex_adjust_ac = 0 unconditionally.
If dex_adjust_ac isn't zero after the addition, the if statement will trigger and it will be set to 0.
If it is zero after the addition, the if statement won't trigger, but it was zero anyway.


FYI I was getting `Bad request, invalid URI` error from the smart proxy, adding Host header helped `\nHost: #{url.hostname}:#{url.port}`


no


I wasn't sure if there was some clever way to make the `asset-active` class take on the attributes of the `border-primary` class so that line could be taken out?


knl;;knl/


`$connect` здесь нет, есть `$link`


the block can be controlled by pressing space bar long jumps and up arrow key for for small jumps


inverse-model (mjwitte) - x86_64-Linux-Ubuntu-18.04-gcc-7.3-UnitTestsCoverage-Debug: OK (1828 of 1829 tests passed, 0 test warnings)

Failures:

EnergyPlusFixture Test Summary
 * Passed: 727
 * Failed: 1

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.95%25-yellow.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-41.62%25-green.png)


wow


[R/assertions.R:21:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L21) *style:* **Lines should not be more than 100 characters.**
```r
    onlyExistingCodes <- all(unique(cohortData34to36$ecoregionGroup) %in% unique(cohortData$initialEcoregionCode))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:33:23:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L33) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    obj <- cohortData[ , .N, by = columns]
                      ^
```
[R/assertions.R:33:24:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L33) *style:* **Commas should never have a space before.**
```r
    obj <- cohortData[ , .N, by = columns]
                      ~^
```
[R/assertions.R:53:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L53) *style:* **Lines should not be more than 100 characters.**
```r
      erg[[1]] <- sort(na.omit(unique(factorValues2(ecoregionMap, ecoregionMap[], att = "ecoregionGroup"))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:61:46:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L61) *style:* **Put spaces around all infix operators.**
```r
    lens <- sapply(erg, function(x) length(x)>1)
                                            ~^~
```
[R/assertions.R:88:56:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L88) *style:* **Commas should always have a space after.**
```r
      stop("obj should be a data.table with at least ",NROW(colNames)," columns: ",
                                                       ^
```
[R/assertions.R:88:71:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L88) *style:* **Commas should always have a space after.**
```r
      stop("obj should be a data.table with at least ",NROW(colNames)," columns: ",
                                                                      ^
```
[R/assertions.R:114:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L114) *style:* **Lines should not be more than 100 characters.**
```r
    test1 <- sum(!a %in% b)  # can be 1 because there could be pixelGroup of 0, which is OK to not match
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:115:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L115) *style:* **Lines should not be more than 100 characters.**
```r
    test2 <- sum(!b %in% a)  # can be 1 because there could be pixelGroup of 0, which is OK to not match
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:122:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L122) *style:* **Lines should not be more than 100 characters.**
```r
      if (test1 > maxExpectedNumDiverge) message("test1 is ", test1, " -- too many pixelGroups on pixelGroupMap")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:123:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L123) *style:* **Lines should not be more than 100 characters.**
```r
      if (test2 > maxExpectedNumDiverge) message("test2 is ", test2, " -- too many pixelGroups in cohortData")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:124:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L124) *style:* **Lines should not be more than 100 characters.**
```r
      stop("The sim$pixelGroupMap and cohortData have unmatching pixelGroup. They must be matching.",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:157:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L157) *style:* **Lines should not be more than 100 characters.**
```r
    test3 <- identical(as.integer(pixelsOnMap - (lenBurnedPixels - pixelsRegeneratedOnZeros)), lenUniquePixelsInCohorts)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:163:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/assertions.R#L163) *style:* **Lines should not be more than 100 characters.**
```r
           " This test is failing, i.e., there are some pixelGroupMaps have pixelGroups, and aren't in pixelCohortData.")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cleanLandWebStudyArea.R:50:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cleanLandWebStudyArea.R#L50) *style:* **Lines should not be more than 100 characters.**
```r
      if (length(na.omit(pmatch(c("ANC", "DMI", "LandWeb", "LP", "MPB", "testing", "tolko"), type))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:46:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L46) *style:* **Lines should not be more than 100 characters.**
```r
#' @param treedFirePixelTableSinceLastDisp A data.table with at least 2 columns, \code{pixelIndex} and \code{pixelGroup}.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:66:48:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L66) *style:* **Variable and function names should not be longer than 30 characters.**
```r
                             speciesEcoregion, treedFirePixelTableSinceLastDisp = NULL,
                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:87:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L87) *style:* **Lines should not be more than 100 characters.**
```r
      message(crayon::green("  Regenerating only open pixels (e.g., likely resprouting & serotiny only)"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:88:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L88) *style:* **Lines should not be more than 100 characters.**
```r
    columnsForPG <- c("ecoregionGroup", "speciesCode", "age") # no Biomass because they all have zero
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:89:31:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L89) *style:* **Commas should always have a space after.**
```r
    cd <- newPixelCohortData[,c("pixelIndex", columnsForPG), with = FALSE]
                              ^
```
[R/cohorts.R:113:20:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L113) *style:* **Commas should always have a space after.**
```r
    cd <- cohorts[,c("pixelIndex", columnsForPG), with = FALSE]
                   ^
```
[R/cohorts.R:120:30:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L120) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    allCohortData <- cohorts[ , .(ecoregionGroup = ecoregionGroup[1],
                             ^
```
[R/cohorts.R:120:31:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L120) *style:* **Commas should never have a space before.**
```r
    allCohortData <- cohorts[ , .(ecoregionGroup = ecoregionGroup[1],
                             ~^
```
[R/cohorts.R:145:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L145) *style:* **Commented code should be removed.**
```r
  # newPixelCohortData[, sumB := sum(B, na.rm = TRUE), by = pixelGroup]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:215:3:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L215) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- speciesEcoregionLatestYear(speciesEcoregion, time)
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:216:3:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L216) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- setkey(specieseco_current[, .(speciesCode, maxANPP, maxB, ecoregionGroup)],
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:221:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L221) *style:* **Lines should not be more than 100 characters.**
```r
  # missingNewPixelCohortData <- newPixelCohortData[!specieseco_current, on = uniqueSpeciesEcoregionDefinition]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:221:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L221) *style:* **Commented code should be removed.**
```r
  # missingNewPixelCohortData <- newPixelCohortData[!specieseco_current, on = uniqueSpeciesEcoregionDefinition]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:222:3:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L222) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- specieseco_current[!is.na(maxB)]
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:223:24:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L223) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current[, maxB_eco := max(maxB), by = ecoregionGroup]
                       ^~~~~~~~
```
[R/cohorts.R:224:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L224) *style:* **Lines should not be more than 100 characters.**
```r
  newPixelCohortData <- specieseco_current[newPixelCohortData, on = uniqueSpeciesEcoregionDefinition]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:226:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L226) *style:* **Lines should not be more than 100 characters.**
```r
  # newPixelCohortData <- newPixelCohortData[specieseco_current, on = uniqueSpeciesEcoregionDefinition,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:228:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L228) *style:* **Lines should not be more than 100 characters.**
```r
  #newPixelCohortData <- setkey(newPixelCohortData, speciesCode, ecoregionGroup)[specieseco_current, nomatch = 0]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:228:4:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L228) *style:* **Commented code should be removed.**
```r
  #newPixelCohortData <- setkey(newPixelCohortData, speciesCode, ecoregionGroup)[specieseco_current, nomatch = 0]
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:233:26:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L233) *style:* **Variable or function name should be lowerCamelCase.**
```r
    newPixelCohortData[, B := NULL]
                         ^
```
[R/cohorts.R:237:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L237) *style:* **Lines should not be more than 100 characters.**
```r
  set(newPixelCohortData, NULL, "B", as.integer(pmin(newPixelCohortData$maxANPP, newPixelCohortData$B)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:273:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L273) *style:* **Lines should not be more than 100 characters.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:273:67:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L273) *style:* **Commas should always have a space after.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
                                                                  ^
```
[R/cohorts.R:273:70:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L273) *style:* **Commented code should be removed.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:274:4:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L274) *style:* **Commented code should be removed.**
```r
  #pgsStillInPGMGoneFromCD <- setdiff(unique(pgmVals$pixelGroup), unique(cohortData$pixelGroup))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:276:64:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L276) *style:* **Commas should always have a space after.**
```r
  pgsStillInPGMGoneFromCD <- pgmVals[whPgsStillInPGMGoneFromCD,]
                                                               ^
```
[R/cohorts.R:328:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L328) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c(columns2) := lapply(.SD, function(x) {
      ^
```
[R/cohorts.R:328:8:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L328) *style:* **Commas should never have a space before.**
```r
  pcd[ , c(columns2) := lapply(.SD, function(x) {
      ~^
```
[R/cohorts.R:332:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L332) *style:* **Lines should not be more than 100 characters.**
```r
  # concatenate within rows -- e.g., ecoregionCode_speciesCode_age_biomass or 647_11_Abie_sp_100_2000
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:338:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L338) *style:* **Lines should not be more than 100 characters.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:338:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L338) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
      ^
```
[R/cohorts.R:338:8:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L338) *style:* **Commas should never have a space before.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
      ~^
```
[R/cohorts.R:339:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L339) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c("pixelGroup") := as.integer(maxPixelGroup) + as.integer(factor(uniqueComboByPixelIndex))]
      ^
```
[R/cohorts.R:339:8:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L339) *style:* **Commas should never have a space before.**
```r
  pcd[ , c("pixelGroup") := as.integer(maxPixelGroup) + as.integer(factor(uniqueComboByPixelIndex))]
      ~^
```
[R/cohorts.R:378:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L378) *style:* **Variable and function names should not be longer than 30 characters.**
```r
uniqueSpeciesEcoregionDefinition <- c("speciesCode", "ecoregionGroup")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:390:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L390) *style:* **Lines should not be more than 100 characters.**
```r
  message(magenta("Pixels with non-NA cover:, ", cohortData[!is.na(cover), length(unique(pixelIndex))]))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:398:86:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L398) *style:* **Put spaces around all infix operators.**
```r
    pixelsZero <- NROW(cohortData[, all(get(val) == 0), by = "pixelIndex"][get("V1") ==TRUE])
                                                                                ^~~
```
[R/cohorts.R:399:40:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L399) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," == 0): ", format(pixelsZero, big.mark = ",")))
                                       ^
```
[R/cohorts.R:399:44:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L399) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," == 0): ", format(pixelsZero, big.mark = ",")))
                                           ^
```
[R/cohorts.R:400:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L400) *style:* **Lines should not be more than 100 characters.**
```r
    pixelsBiomassNonZero <- NROW(cohortData[, any(get(val) > 0), by = "pixelIndex"][get("V1") ==TRUE])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:400:95:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L400) *style:* **Put spaces around all infix operators.**
```r
    pixelsBiomassNonZero <- NROW(cohortData[, any(get(val) > 0), by = "pixelIndex"][get("V1") ==TRUE])
                                                                                ^~~
```
[R/cohorts.R:401:40:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L401) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," > 0): ", format(pixelsBiomassNonZero, big.mark = ",")))
                                       ^
```
[R/cohorts.R:401:44:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L401) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," > 0): ", format(pixelsBiomassNonZero, big.mark = ",")))
                                           ^
```
[R/cohorts.R:402:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L402) *style:* **Lines should not be more than 100 characters.**
```r
    out <- list(pixelsNA = pixelsNA, pixelsZero = pixelsZero, pixelsBiomassNonZero = pixelsBiomassNonZero)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:437:32:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L437) *style:* **Variable or function name should be lowerCamelCase.**
```r
                               availableERC_by_Sp) {
                               ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:445:4:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L445) *style:* **Commented code should be removed.**
```r
  #cdEcoregionCodes <- as.character(unique(pixelCohortData$initialEcoregionCode))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:446:4:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L446) *style:* **Commented code should be removed.**
```r
  #availableERC_by_Sp <- unique(pixelCohortData, by = c("initialEcoregionCode", "speciesCode", "B"))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:447:4:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L447) *style:* **Commented code should be removed.**
```r
  #availableERC_by_Sp <- availableERC_by_Sp[eval(rowsInPCDToKeep)]
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:448:4:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L448) *style:* **Commented code should be removed.**
```r
  #availableERC_by_Sp <- unique(availableERC_by_Sp, by = c("initialEcoregionCode", "speciesCode"))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:452:6:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L452) *style:* **Commented code should be removed.**
```r
    #theUnwantedCellsFromCD <- unique(pixelCohortData[lcc %in% pixelClassesToReplace]$pixelIndex)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:453:6:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L453) *style:* **Commented code should be removed.**
```r
    #iden <- identical(sort(unique(theUnwantedPixels)), sort(theUnwantedCellsFromCD))
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:455:8:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L455) *style:* **Commented code should be removed.**
```r
    #  stop("values of 34 and 35 on pixelCohortData and sim$LCC2005 don't match")
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:460:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L460) *style:* **Commented code should be removed.**
```r
  # availableERC_by_Sp[, initialEcoregionCode := NULL]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:463:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L463) *style:* **Commented code should be removed.**
```r
  # cd <- pixelCohortData[, .(pixelIndex, initialEcoregionCode, speciesCode)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:470:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L470) *style:* **Lines should not be more than 100 characters.**
```r
    out <- out[initialPixels != pixels] # rm pixels which are same as initialPixels --> these are known wrong
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:473:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L473) *style:* **Lines should not be more than 100 characters.**
```r
    # out <- unique(availableERC_by_Sp)[out, on = c("pixelIndex" = "pixels"), nomatch = 0] # join the availableERC_by_Sp which has initialEcoregionCode
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:473:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L473) *style:* **Commented code should be removed.**
```r
    # out <- unique(availableERC_by_Sp)[out, on = c("pixelIndex" = "pixels"), nomatch = 0] # join the availableERC_by_Sp which has initialEcoregionCode
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:474:47:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L474) *style:* **Put spaces around all infix operators.**
```r
    out[lcc %in% c(pixelClassesToReplace), lcc:=NA]
                                             ~^~~
```
[R/cohorts.R:476:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L476) *style:* **Commented code should be removed.**
```r
    # out[, `:=`(potentialNewERG = ecoregionGroupVec[pixels])]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:477:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L477) *style:* **Lines should not be more than 100 characters.**
```r
    # attach speciesCode -- need this so that we know which speciesCodes to test against speciesEcoregion
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:478:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L478) *style:* **Lines should not be more than 100 characters.**
```r
    # a <- out[availableERC_by_Sp, allow.cartesian = TRUE, on = c("initialPixels" = "pixelIndex"), nomatch = NA]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:478:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L478) *style:* **Commented code should be removed.**
```r
    # a <- out[availableERC_by_Sp, allow.cartesian = TRUE, on = c("initialPixels" = "pixelIndex"), nomatch = NA]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:480:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L480) *style:* **Lines should not be more than 100 characters.**
```r
                               on = c("pixelIndex" = "initialPixels"), nomatch = NA] # join the availableERC_by_Sp which has initialEcoregionCode
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:482:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L482) *style:* **Lines should not be more than 100 characters.**
```r
    out5[, possERC := paste0(ecoregion, "_", paddedFloatToChar(as.numeric(lcc), padL = 2, padR = 0))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:483:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L483) *style:* **Lines should not be more than 100 characters.**
```r
    out7 <- out5[availableERG2, on = c("speciesCode", "possERC" = "initialEcoregionCode"), nomatch = NA]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:503:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L503) *style:* **Lines should not be more than 100 characters.**
```r
      rowsToKeep <- out6[, list(keep = .resample(.I, 1)), by = c("pixelIndex")] # random sample of available, weighted by abundance
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:508:8:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L508) *style:* **Commented code should be removed.**
```r
      #out2 <- out2[rowsToKeep$keep]
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:510:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L510) *style:* **Lines should not be more than 100 characters.**
```r
                                      paddedFloatToChar(as.numeric(newPossLCC), padL = 2, padR = 0))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:513:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L513) *style:* **Lines should not be more than 100 characters.**
```r
      # remove combinations of ecoregionGroup and speciesCode that don't exist -- Now this excludes B = 0
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:514:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L514) *style:* **Lines should not be more than 100 characters.**
```r
      #out2 <- availableERC_by_Sp[out2, on = c("pixelIndex" = "initialPixels", "initialEcoregionCode" = "ecoregionGroup", "speciesCode"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:516:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L516) *style:* **Lines should not be more than 100 characters.**
```r
      #hasMatch <- out2[, all(!is.na(rasterToMatch)), by = c("pixelIndex", "initialEcoregionCode", "speciesCode")][V1 == TRUE]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:516:8:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L516) *style:* **Commented code should be removed.**
```r
      #hasMatch <- out2[, all(!is.na(rasterToMatch)), by = c("pixelIndex", "initialEcoregionCode", "speciesCode")][V1 == TRUE]
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:518:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L518) *style:* **Lines should not be more than 100 characters.**
```r
      # out2 <- out2[ecoregionGroup %in% cdEcoregionCodes] # remove codes that don't exist in pixelCohortData
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:518:9:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L518) *style:* **Commented code should be removed.**
```r
      # out2 <- out2[ecoregionGroup %in% cdEcoregionCodes] # remove codes that don't exist in pixelCohortData
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:532:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L532) *style:* **Commented code should be removed.**
```r
  # setnames(out3, c("initialPixels", "initialEcoregionCode"), c("pixelIndex", "ecoregionGroup"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:534:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L534) *style:* **Commented code should be removed.**
```r
  # out3 <- unique(out3, by = c("pixelIndex", "ecoregionGroup"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:573:63:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L573) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                           function(x) all(x >= 0 & x <= 100)  ))))
                                                              ^
```
[R/cohorts.R:590:6:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L590) *style:* **Commented code should be removed.**
```r
    #describeCohortData(cohortData)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:598:16:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L598) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[, V1 := NULL]
               ^~
```
[R/cohorts.R:601:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L601) *style:* **Lines should not be more than 100 characters.**
```r
  # message(crayon::blue("POSSIBLE ALERT -- assume deciduous cover is 1/2 the conversion to B as conifer"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:601:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L601) *style:* **Commented code should be removed.**
```r
  # message(crayon::blue("POSSIBLE ALERT -- assume deciduous cover is 1/2 the conversion to B as conifer"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:602:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L602) *style:* **Lines should not be more than 100 characters.**
```r
  # cohortData[speciesCode == "Popu_sp", cover := asInteger(cover / 2)] # CRAZY TODO -- DIVIDE THE COVER BY 2 for DECIDUOUS -- will only affect mixed stands
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:602:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L602) *style:* **Commented code should be removed.**
```r
  # cohortData[speciesCode == "Popu_sp", cover := asInteger(cover / 2)] # CRAZY TODO -- DIVIDE THE COVER BY 2 for DECIDUOUS -- will only affect mixed stands
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:603:14:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L603) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , cover := {
             ^
```
[R/cohorts.R:603:15:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L603) *style:* **Commas should never have a space before.**
```r
  cohortData[ , cover := {
             ~^
```
[R/cohorts.R:606:31:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L606) *style:* **Put spaces around all infix operators.**
```r
      cover <- asInteger(cover/(sumCover + 0.0001) * 100L)
                             ~^~
```
[R/cohorts.R:606:32:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L606) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      cover <- asInteger(cover/(sumCover + 0.0001) * 100L)
                               ^
```
[R/cohorts.R:613:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L613) *style:* **Lines should not be more than 100 characters.**
```r
  cohortData[ , B := asInteger(mean(totalBiomass) * cover / 100), by = "pixelIndex"] # /100 because cover is percent
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:613:14:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L613) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , B := asInteger(mean(totalBiomass) * cover / 100), by = "pixelIndex"] # /100 because cover is percent
             ^
```
[R/cohorts.R:613:15:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L613) *style:* **Commas should never have a space before.**
```r
  cohortData[ , B := asInteger(mean(totalBiomass) * cover / 100), by = "pixelIndex"] # /100 because cover is percent
             ~^
```
[R/cohorts.R:613:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L613) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[ , B := asInteger(mean(totalBiomass) * cover / 100), by = "pixelIndex"] # /100 because cover is percent
                ^
```
[R/cohorts.R:615:14:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L615) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , B := asInteger(ceiling(B / pixelGroupBiomassClass) *
             ^
```
[R/cohorts.R:615:15:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L615) *style:* **Commas should never have a space before.**
```r
  cohortData[ , B := asInteger(ceiling(B / pixelGroupBiomassClass) *
             ~^
```
[R/cohorts.R:615:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L615) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[ , B := asInteger(ceiling(B / pixelGroupBiomassClass) *
                ^
```
[R/cohorts.R:618:14:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L618) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , totalBiomass := asInteger(totalBiomass)]
             ^
```
[R/cohorts.R:618:15:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L618) *style:* **Commas should never have a space before.**
```r
  cohortData[ , totalBiomass := asInteger(totalBiomass)]
             ~^
```
[R/cohorts.R:623:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L623) *style:* **Lines should not be more than 100 characters.**
```r
  cohortDataMissingAge <- cohortData[, hasBadAge := all(age == 0 & cover > 0) | any(is.na(age)), by = "pixelIndex"][
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:629:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L629) *style:* **Lines should not be more than 100 characters.**
```r
    cohortDataMissingAgeUnique <- cohortDataMissingAgeUnique[cohortData, on = c("initialEcoregionCode", "speciesCode"), nomatch = 0]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:631:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L631) *style:* **Lines should not be more than 100 characters.**
```r
    cohortDataMissingAgeUnique <- cohortDataMissingAgeUnique[, .(B, age, speciesCode, initialEcoregionCode, cover)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:634:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L634) *style:* **Lines should not be more than 100 characters.**
```r
                                uniqueEcoregionGroup = unique(cohortDataMissingAgeUnique$ecoregionGroup),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:638:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L638) *style:* **Lines should not be more than 100 characters.**
```r
    cohortDataMissingAge[, imputedAge := pmax(0L, asInteger(predict(outAge$mod, newdata = cohortDataMissingAge)))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:639:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L639) *style:* **Lines should not be more than 100 characters.**
```r
    cohortData <- cohortDataMissingAge[, .(pixelIndex, imputedAge, speciesCode)][cohortData, on = c("pixelIndex", "speciesCode")]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:648:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L648) *style:* **Lines should not be more than 100 characters.**
```r
  message(blue("Set recalculate totalBiomass as sum(B); many biomasses will have been set to 0 in previous steps"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:649:36:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L649) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[cover > 0 & age == 0, B := 0L]
                                   ^
```
[R/cohorts.R:655:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/cohorts.R#L655) *style:* **Commented code should be removed.**
```r
  # cohortData[ , coverProp := (cover/100 * (NROW(cohortData) - 1) + 0.5) / NROW(cohortData)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:113:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L113) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/biomass-succession_test.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:133:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L133) *style:* **Commented code should be removed.**
```r
  maxcol <- 13 #max(count.fields(file.path(dPath, "species.txt"), sep = ""))
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:154:13:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L154) *style:* **Only use double-quotes.**
```r
  species[, ':='(seeddistance_eff = gsub(",", "", seeddistance_eff),
            ^~~~
```
[R/LANDIS-II-tables.R:154:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L154) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(seeddistance_eff = gsub(",", "", seeddistance_eff),
                ^
```
[R/LANDIS-II-tables.R:167:18:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L167) *style:* **Only use double-quotes.**
```r
  speciesAddon[, ':='(leaflongevity = as.numeric(leaflongevity),
                 ^~~~
```
[R/LANDIS-II-tables.R:167:22:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L167) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesAddon[, ':='(leaflongevity = as.numeric(leaflongevity),
                     ^
```
[R/LANDIS-II-tables.R:179:13:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L179) *style:* **Only use double-quotes.**
```r
  species[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
            ^~~~
```
[R/LANDIS-II-tables.R:179:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L179) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                ^
```
[R/LANDIS-II-tables.R:183:13:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L183) *style:* **Only use double-quotes.**
```r
  species[, ':='(species1 = NULL, species2 = NULL)]
            ^~~~
```
[R/LANDIS-II-tables.R:183:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L183) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(species1 = NULL, species2 = NULL)]
                ^
```
[R/LANDIS-II-tables.R:211:39:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L211) *style:* **Commas should always have a space after.**
```r
  mainInput <- mainInput[col1 != ">>",]
                                      ^
```
[R/LANDIS-II-tables.R:221:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L221) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/ecoregion.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:238:16:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L238) *style:* **Commented code should be removed.**
```r
  maxcol <- 5 #max(count.fields(file.path(dPath, "ecoregions.txt"), sep = ""))
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:254:47:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L254) *style:* **Commas should always have a space after.**
```r
  ecoregion <- ecoregion[col1 != "LandisData",]
                                              ^
```
[R/LANDIS-II-tables.R:255:39:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L255) *style:* **Commas should always have a space after.**
```r
  ecoregion <- ecoregion[col1 != ">>",]
                                      ^
```
[R/LANDIS-II-tables.R:267:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L267) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/biomass-succession-dynamic-inputs_test.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:299:61:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L299) *style:* **Commas should always have a space after.**
```r
  speciesEcoregion <- speciesEcoregion[col1 != "LandisData",]
                                                            ^
```
[R/LANDIS-II-tables.R:300:53:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L300) *style:* **Commas should always have a space after.**
```r
  speciesEcoregion <- speciesEcoregion[col1 != ">>",]
                                                    ^
```
[R/LANDIS-II-tables.R:311:22:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L311) *style:* **Only use double-quotes.**
```r
  speciesEcoregion[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                     ^~~~
```
[R/LANDIS-II-tables.R:311:26:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L311) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesEcoregion[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                         ^
```
[R/LANDIS-II-tables.R:314:22:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L314) *style:* **Only use double-quotes.**
```r
  speciesEcoregion[, ':='(species1 = NULL, species2 = NULL)]
                     ^~~~
```
[R/LANDIS-II-tables.R:314:26:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/LANDIS-II-tables.R#L314) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesEcoregion[, ':='(species1 = NULL, species2 = NULL)]
                         ^
```
[R/maps.R:22:29:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L22) *style:* **Variable or function name should be lowerCamelCase.**
```r
defineFlammable <- function(LandCoverClassifiedMap = NULL,
                            ^~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:75:15:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L75) *style:* **Use <-, not =, for assignment.**
```r
      archive = asPath("LandCoverOfCanada2005_V1_4.zip")
              ^
```
[R/maps.R:78:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L78) *style:* **Lines should not be more than 100 characters.**
```r
        url <- "http://ftp.maps.canada.ca/pub/nrcan_rncan/Land-cover_Couverture-du-sol/canada-landcover_canada-couverture-du-sol/CanadaLandcover2010.zip"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:80:17:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L80) *style:* **Use <-, not =, for assignment.**
```r
        archive = asPath("CanadaLandcover2010.zip")
                ^
```
[R/maps.R:127:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L127) *style:* **Variable or function name should be lowerCamelCase.**
```r
    MixedRas <- speciesStack[[1]]
    ^~~~~~~~
```
[R/maps.R:131:18:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L131) *style:* **Variable or function name should be lowerCamelCase.**
```r
    speciesStack$Mixed <- MixedRas
                 ^~~~~
```
[R/maps.R:183:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L183) *style:* **Lines should not be more than 100 characters.**
```r
                                           leading = speciesCode[which.max(speciesProportion)]), by = "pixelGroup"]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:187:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L187) *style:* **Lines should not be more than 100 characters.**
```r
  levels(vegTypeMap) <- cbind(levels(vegTypeMap)[[1]], colors = colors[match(levels(vegTypeMap)[[1]][[2]], names(colors))],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:218:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L218) *style:* **Commented code should be removed.**
```r
  #   species[species == "Pice_mar", speciesGroup := "PICE_MAR"]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:219:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L219) *style:* **Commented code should be removed.**
```r
  #   species[species == "Pice_gla", speciesGroup := "PICE_GLA"]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:220:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L220) *style:* **Commented code should be removed.**
```r
  #   species[species == "Abie_sp", speciesGroup := "ABIE"]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:224:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L224) *style:* **Commented code should be removed.**
```r
  #   shortcohortdata[, totalB := sum(B, na.rm = TRUE), by = pixelGroup]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:228:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L228) *style:* **Commented code should be removed.**
```r
  #   shortcohortdata[, speciesProportion := speciesGroupB / totalB]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:230:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L230) *style:* **Commented code should be removed.**
```r
  #   speciesLeading <- NULL
      ^~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:233:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L233) *style:* **Commented code should be removed.**
```r
  #   pixelGroup <- NULL
      ^~~~~~~~~~~~~~~~~~
```
[R/maps.R:234:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L234) *style:* **Commented code should be removed.**
```r
  #   speciesProportion <- NULL
      ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:235:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L235) *style:* **Commented code should be removed.**
```r
  #   speciesGroup <- NULL
      ^~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:236:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L236) *style:* **Commented code should be removed.**
```r
  #   speciesCode <- NULL
      ^~~~~~~~~~~~~~~~~~~
```
[R/maps.R:237:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L237) *style:* **Commented code should be removed.**
```r
  #   totalB <- NULL
      ^~~~~~~~~~~~~~
```
[R/maps.R:239:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L239) *style:* **Commented code should be removed.**
```r
  #   speciesGroupB <- NULL
      ^~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:249:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L249) *style:* **Commented code should be removed.**
```r
  #   shortcohortdata[is.na(speciesLeading), speciesLeading := 0]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:250:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L250) *style:* **Commented code should be removed.**
```r
  #   shortcohortdata[, speciesLeading := max(speciesLeading, na.rm = TRUE), by = pixelGroup]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:251:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L251) *style:* **Commented code should be removed.**
```r
  #   shortcohortdata <- unique(shortcohortdata[, .(pixelGroup, speciesLeading)], by = "pixelGroup")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:252:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L252) *style:* **Commented code should be removed.**
```r
  #   shortcohortdata[speciesLeading == 0, speciesLeading := 5] # 5 is mixed forests
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:253:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L253) *style:* **Commented code should be removed.**
```r
  #   attritable <- data.table(ID = sort(unique(shortcohortdata$speciesLeading)))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:258:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L258) *style:* **Commented code should be removed.**
```r
  #   attritable[ID == 5, Factor := "Mixed"]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:259:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L259) *style:* **Commented code should be removed.**
```r
  #   vegTypeMap <- rasterizeReduced(shortcohortdata, pixelGroupMap, "speciesLeading", "pixelGroup")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:260:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L260) *style:* **Commented code should be removed.**
```r
  #   vegTypeMap <- setValues(vegTypeMap, as.integer(getValues(vegTypeMap)))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:261:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L261) *style:* **Commented code should be removed.**
```r
  #   levels(vegTypeMap) <- as.data.frame(attritable)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:262:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L262) *style:* **Commented code should be removed.**
```r
  #   projection(vegTypeMap) <- projection(pixelGroupMap)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:375:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L375) *style:* **Lines should not be more than 100 characters.**
```r
  ## select which archives/targetFiles to extract -- because there was "multi" above, need unique here
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:382:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L382) *style:* **Lines should not be more than 100 characters.**
```r
                    archive2 = file.path(dPath, paste0("NFI_MODIS250m_kNN_Species_", kNNnames, "_v0.zip")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:385:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L385) *style:* **Lines should not be more than 100 characters.**
```r
  if (!all(reproducible::basename2(file_path_sans_ext(names(archives))) == file_path_sans_ext(targetFiles)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:392:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L392) *style:* **Lines should not be more than 100 characters.**
```r
    message("This looks like a lot of species; did you mean to pass only a subset of this to sppEquiv?",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:410:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L410) *style:* **Lines should not be more than 100 characters.**
```r
                         prepInputs, quick = TRUE) # don't need to digest all the "targetFile" and "archives"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:412:77:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L412) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  noDataLayers <- sapply(speciesLayers, function(x) if (maxValue(x) < thresh ) FALSE else TRUE)
                                                                            ^
```
[R/maps.R:415:76:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L415) *style:* **Commas should always have a space after.**
```r
    message("removing ", sum(!noDataLayers), " species because they had <",thresh,
                                                                           ^
```
[R/maps.R:417:1:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L417) *style:* **Lines should not be more than 100 characters.**
```r
            "\n  These species are retained (and could be further culled manually, if desired):\n  ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:439:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L439) *style:* **Commented code should be removed.**
```r
  # layerData <- Cache(sapply, X = speciesLayers, function(x) sum(x[] > 0, na.rm = TRUE))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:441:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L441) *style:* **Commented code should be removed.**
```r
  # ## remove layers that had < thresh pixels with biomass
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:442:5:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L442) *style:* **Commented code should be removed.**
```r
  # belowThresh <- layerData < thresh
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:444:7:](https://github.com/PredictiveEcology/LandR/blob/6ed7d40063da1daf0a69f37678410a38da4f127a/R/maps.R#L444) *style:* **Commented code should be removed.**
```r
  #   message(names(belowThresh)[belowThresh], " was removed because it had no data")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


The intent was to wipe away any dexterity bonuses gained if either of those two conditions are met, which it does. It's not supposed to adjust any penalties.


Successfully aliased the URL <https://graphical-password-scheme-evaluation-b73rcehxg.now.sh> to the following alias.

* https://gpa-evaluation.now.sh


[R/env-lib.R:236:4:](https://github.com/qbotics/Rpolyhedra/blob/98eca929e3233e8e885837587b1301654409663d/R/env-lib.R#L236) *style:* **Commented code should be removed.**
```r
  #rgit2r::commits()[[1]]@sha
   ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/package-lib.R:340:23:](https://github.com/qbotics/Rpolyhedra/blob/98eca929e3233e8e885837587b1301654409663d/R/package-lib.R#L340) *style:* **Commented code should be removed.**
```r
      db.version <- "#not-defined#"
                      ^~~~~~~~~~~~~
```
[R/polyhedra-lib.R:933:6:](https://github.com/qbotics/Rpolyhedra/blob/98eca929e3233e8e885837587b1301654409663d/R/polyhedra-lib.R#L933) *style:* **Commented code should be removed.**
```r
    #mass.center: -0.77777777691603 -0.833950387905475 -0.839177040579277
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


😢 I'll miss being asked for large blocks of html