[R/DAISIE_area_params.R:32:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_area_params.R#L32) *style:* **Lines should not be more than 80 characters.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:32:93:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_area_params.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
                                                                                ^
```
[R/DAISIE_area_params.R:37:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_area_params.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:37:83:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_area_params.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
                                                                                ^
```
[R/DAISIE_area_params.R:41:13:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_area_params.R#L41) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/DAISIE_area_params.R:60:28:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_area_params.R#L60) *style:* **Trailing whitespace is superfluous.**
```r
  list(max_area = max_area,
                           ^
```
[R/DAISIE_create_island.R:5:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_spec matrix with species on island (state of system at each time point)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:7:75:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' @param keep_final_state logical indicating if final state of simulation
                                                                          ^
```
[R/DAISIE_create_island.R:10:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list with the island information, composed stt table, branching times of extant
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:12:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L12) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:12:44:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
DAISIE_create_island <- function(stt_table,
                                           ^
```
[R/DAISIE_create_island.R:13:44:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L13) *style:* **Trailing whitespace is superfluous.**
```r
                                 totaltime,
                                           ^
```
[R/DAISIE_create_island.R:14:46:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
                                 island_spec,
                                             ^
```
[R/DAISIE_create_island.R:17:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L17) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:18:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:18:104:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
                                                                                ^
```
[R/DAISIE_create_island.R:19:27:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L19) *style:* **Commas should always have a space after.**
```r
  if (length(island_spec[,1]) == 0) {
                          ^
```
[R/DAISIE_create_island.R:20:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L20) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:21:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L21) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:33:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L33) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:34:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L34) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:35:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L35) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:37:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L37) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:45:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L45) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:47:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L47) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:49:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "branching time (BP)"] <- totaltime - as.numeric(island_spec[, "branching time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:50:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "Colonisation time (BP)"] <- totaltime - as.numeric(island_spec[, "Colonisation time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:51:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L51) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:58:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L58) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:60:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:60:65:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L60) *style:* **Only use double-quotes.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
                                                                ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:61:60:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L61) *style:* **Trailing whitespace is superfluous.**
```r
      number_colonists_present <- length(colonists_present)
                                                           ^
```
[R/DAISIE_create_island.R:62:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L62) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:63:35:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L63) *style:* **Trailing whitespace is superfluous.**
```r
      island_clades_info <- list()
                                  ^~
```
[R/DAISIE_create_island.R:65:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:65:58:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L65) *style:* **Only use double-quotes.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:65:104:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L65) *style:* **Commas should always have a space after.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:65:105:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L65) *style:* **Trailing whitespace is superfluous.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:66:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L66) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:67:37:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L67) *style:* **Only use double-quotes.**
```r
        if (class(subset_island) != 'matrix') {
                                    ^~~~~~~~
```
[R/DAISIE_create_island.R:71:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L71) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:73:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L73) *style:* **Lines should not be more than 80 characters.**
```r
                                                      island_spec = subset_island,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:75:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
                                                      keep_final_state = keep_final_state)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:81:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L81) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:84:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L84) *style:* **Lines should not be more than 80 characters.**
```r
                       taxon_list = island_clades_info, island_spec = island_spec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:88:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_create_island.R#L88) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_data.R:2:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:7:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:12:34:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
#' the following elements.\cr \cr
                                 ^
```
[R/DAISIE_data.R:47:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:52:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:92:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L92) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:96:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L96) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:103:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L103) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:124:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L124) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:27:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L125) *style:* **Trailing whitespace is superfluous.**
```r
#' for the Galapagos data.
                          ^
```
[R/DAISIE_data.R:127:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L127) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:158:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L158) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:161:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L161) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:165:42:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{$island_age} - the island age\cr
                                         ^
```
[R/DAISIE_data.R:197:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L197) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:247:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L247) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:256:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L256) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:270:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L270) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:277:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_data.R#L277) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:2:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:7:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:10:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:86:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_dataprep.R:87:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L87) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:88:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:89:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L89) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:90:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L91) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:98:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L98) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:100:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L100) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:100:82:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L100) *style:* **Trailing whitespace is superfluous.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
                                                                                ^
```
[R/DAISIE_dataprep.R:101:79:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L101) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:104:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L104) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:113:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L113) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:114:80:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L114) *style:* **Trailing whitespace is superfluous.**
```r
#' ### Create Galapagos data object with a distinct macroevolutionary processes
                                                                               ^
```
[R/DAISIE_dataprep.R:115:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L115) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:79:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L116) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:117:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L117) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L118) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:128:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L128) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Lines should not be more than 80 characters.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:17:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Use <-, not =, for assignment.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                ^
```
[R/DAISIE_dataprep.R:130:38:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                     ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:51:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                  ^
```
[R/DAISIE_dataprep.R:130:74:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                         ^
```
[R/DAISIE_dataprep.R:130:131:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                                ^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L131) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_dataprep.R:132:24:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L132) *style:* **Use <-, not =, for assignment.**
```r
  number_colonisations = nrow(datatable)
                       ^
```
[R/DAISIE_dataprep.R:133:12:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L133) *style:* **Use <-, not =, for assignment.**
```r
  datalist = list()
           ^
```
[R/DAISIE_dataprep.R:134:13:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L134) *style:* **Variable or function name should be snake_case.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:134:28:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L134) *style:* **Put spaces around all infix operators.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
                          ~^~~
```
[R/DAISIE_dataprep.R:135:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L135) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_dataprep.R:136:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L136) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 1)
    ^
```
[R/DAISIE_dataprep.R:137:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L137) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:138:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L138) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:138:19:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L138) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                  ^
```
[R/DAISIE_dataprep.R:138:36:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                  ~^~
```
[R/DAISIE_dataprep.R:138:48:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L138) *style:* **Commas should always have a space after.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                               ^
```
[R/DAISIE_dataprep.R:138:59:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                         ~^~
```
[R/DAISIE_dataprep.R:138:60:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L138) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                           ^
```
[R/DAISIE_dataprep.R:140:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L140) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 2)
    ^
```
[R/DAISIE_dataprep.R:141:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L141) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:142:32:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L142) *style:* **Use <-, not =, for assignment.**
```r
    number_type2_colonisations = length(list_type2_clades)
                               ^
```
[R/DAISIE_dataprep.R:143:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L143) *style:* **Lines should not be more than 80 characters.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:143:32:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L143) *style:* **Use <-, not =, for assignment.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
                               ^
```
[R/DAISIE_dataprep.R:145:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L145) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:146:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L146) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:146:25:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L146) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:146:41:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L146) *style:* **Put spaces around all infix operators.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:147:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L147) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:147:25:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L147) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:147:41:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L147) *style:* **Put spaces around all infix operators.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:149:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L149) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:149:25:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L149) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:150:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:150:25:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L150) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:152:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:19:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L152) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
                  ^
```
[R/DAISIE_dataprep.R:155:3:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L155) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:156:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:156:23:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                      ^
```
[R/DAISIE_dataprep.R:156:71:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                      ^
```
[R/DAISIE_dataprep.R:156:86:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:107:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:117:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:147:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:157:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L157) *style:* **Lines should not be more than 80 characters.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:157:14:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L157) *style:* **Use <-, not =, for assignment.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
             ^
```
[R/DAISIE_dataprep.R:157:77:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                            ^
```
[R/DAISIE_dataprep.R:157:97:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                                ^
```
[R/DAISIE_dataprep.R:158:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L158) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:159:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:7:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
      ^
```
[R/DAISIE_dataprep.R:159:21:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                   ~^~
```
[R/DAISIE_dataprep.R:159:33:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                ^
```
[R/DAISIE_dataprep.R:159:46:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:70:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                     ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~
```
[R/DAISIE_dataprep.R:159:92:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:117:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:132:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:132:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:160:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:163:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ~^~
```
[R/DAISIE_dataprep.R:159:164:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~
```
[R/DAISIE_dataprep.R:159:168:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L159) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:160:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L160) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:161:7:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L161) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(the_brts) == 1)
      ^
```
[R/DAISIE_dataprep.R:161:30:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L161) *style:* **Trailing whitespace is superfluous.**
```r
    if(length(the_brts) == 1)
                             ^
```
[R/DAISIE_dataprep.R:162:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L162) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:163:1:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L163) *style:* **Lines should not be more than 80 characters.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:163:41:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L163) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                        ^
```
[R/DAISIE_dataprep.R:163:56:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L163) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                                       ^
```
[R/DAISIE_dataprep.R:163:69:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L163) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                                                    ^
```
[R/DAISIE_dataprep.R:165:7:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L165) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(the_brts) > 1)
      ^
```
[R/DAISIE_dataprep.R:165:29:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
    if(length(the_brts) > 1)
                            ^~
```
[R/DAISIE_dataprep.R:166:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L166) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:167:41:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L167) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,the_brts)
                                        ^
```
[R/DAISIE_dataprep.R:167:56:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L167) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,the_brts)
                                                       ^
```
[R/DAISIE_dataprep.R:169:7:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L169) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Non_endemic_MaxAge")
      ^
```
[R/DAISIE_dataprep.R:169:20:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L169) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Non_endemic_MaxAge")
                   ^
```
[R/DAISIE_dataprep.R:170:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L170) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:171:30:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L171) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 1
                             ^
```
[R/DAISIE_dataprep.R:173:7:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L173) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Endemic")
      ^
```
[R/DAISIE_dataprep.R:173:20:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L173) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Endemic")
                   ^
```
[R/DAISIE_dataprep.R:174:5:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L174) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:175:30:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L175) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 2
                             ^
```
[R/DAISIE_dataprep.R:176:9:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L176) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if(max(the_brts)>island_age){
        ^
```
[R/DAISIE_dataprep.R:176:23:](https://github.com/rsetienne/DAISIE/blob/3a257abdcdfb9134c6073aa81a838e71f7df7923/R/DAISIE_dataprep.R#L176) *style:* **Put spaces around all infix operators.**
```r
      if(max(the_brts)>island_age){
                     ~^~
```


Ok, I misunderstood


arborjs 代码


cool it works


Where do these files live now?


cool it realy works


Missing set_perms: https://github.com/hestiacp/hestiacp/commit/bd2bc22c95b5abe55ea46bc03dd8a5431291a256
php-fpm dumy.conf: https://github.com/hestiacp/hestiacp/commit/0657647d05d7e764dc9df4985b0e2c54be5e688a


Successfully aliased the URL <https://itberries-frontend-ejfp0vtwe.now.sh> to the following aliases.

* https://itberries-frontend.now.sh
* https://itberries-frontend-git-master.it-berries1.now.sh


I belive you can


Hm, können die Punkte nicht ganz raus?


Aren't such instructions marked as live in the initial pass, due to the is_bad_mod check in may_have_side_effects?


`@JuliaRegistrator register()`


Error while trying to register: Project file should contain name, uuid and version


Oder: "Bei diskreten und insbes. bei nominalen Variablen" ?


メンバ初期化子が省略された場合には、メンバ宣言時の初期化式が優先される。やって。
C++11以降は対応できるみたいやから大丈夫かも、すまぬ・・・。
コンストラクタでメンバ変数設定する場合は、そっちが優先されるみたいやから気を付けて。


auf die folgende


Push to master branch


erstmal = erst einmal


updated


At least, now it's not optimized out after SCCP.


How was the update performed (manually or auto-updater) and what version were you on previously?   We sometimes see that error with incomplete upgrades from Mura 6x to 7 latest.


I think we should still inherit the classes, but if `altInputClass` is specified it should take over


Arrays


Fehlt da nicht ein Prozentzeichen?


Yeeeeeeee 😂


add endline


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/master/594/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/master/594/display/redirect) (on internal Jenkins) failed in stage(s) 'Test run' 🔥 : org.jenkinsci.plugins.workflow.steps.FlowInterruptedException

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/master/594//console)
✅ Packages: [xamarin.ios-12.11.0.376.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/master/88d05b0245cd92854bb3be6fb25d2ec970c28550/594/package/xamarin.ios-12.11.0.376.pkg) [xamarin.mac-5.11.0.376.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/master/88d05b0245cd92854bb3be6fb25d2ec970c28550/594/package/xamarin.mac-5.11.0.376.pkg)
✅ [API Diff (from stable)](http://xamarin-storage/jenkins/xamarin-macios/master/88d05b0245cd92854bb3be6fb25d2ec970c28550/594/jenkins-results/api-diff/index.html)
✅ [API Diff (from PR only)](http://xamarin-storage/jenkins/xamarin-macios/master/88d05b0245cd92854bb3be6fb25d2ec970c28550/594/jenkins-results/apicomparison/api-diff.html) (no change)
✅ [Generator Diff](http://xamarin-storage/jenkins/xamarin-macios/master/88d05b0245cd92854bb3be6fb25d2ec970c28550/594/jenkins-results/generator-diff/index.html) (no change)


I encountered a bug when running this commit:
![image](https://user-images.githubusercontent.com/25534685/56592854-6804a200-65b9-11e9-9b71-89394f2c70fa.png)


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/master/595/display/redirect)

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Good lord. Why do I forget these things?


ASSIGN is marked, but not the source of REFERENCE.


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Right, we probably need to add support for it in https://github.com/php/php-src/blob/master/ext/opcache/Optimizer/dfa_pass.c#L679.


We should push the time that it last completed instead of a boolean value. Otherwise the job could be failing for days, but since the last thing it pushed was a success, we never know!


Hello,

I had the same issue and added replaced the ahba docker image but I still could not build the Docker file, Error below:

C:\NeuroVault-master\NeuroVault-master>docker-compose up -d
Building uwsgi
Step 1/66 : FROM neurovault/ahba
 ---> 2ef6a933137f
Step 2/66 : RUN apt-get update && apt-get install -y     libopenblas-dev     gfortran     libhdf5-dev     libhdf5-8     libgeos-dev
 ---> Running in 0f78ad1f66c0
Ign http://httpredir.debian.org jessie InRelease
Get:1 http://httpredir.debian.org jessie-updates InRelease [7340 B]
Get:2 http://security.debian.org jessie/updates InRelease [44.9 kB]
Get:3 http://httpredir.debian.org jessie Release.gpg [2420 B]
Get:4 http://httpredir.debian.org jessie Release [148 kB]
Get:5 http://security.debian.org jessie/updates/main amd64 Packages [824 kB]
Get:6 http://httpredir.debian.org jessie/main amd64 Packages [9098 kB]
Fetched 10.1 MB in 5s (1979 kB/s)
W: Failed to fetch http://httpredir.debian.org/debian/dists/jessie-updates/InRelease  Unable to find expected entry 'main/binary-amd64/Packages' in Release file (Wrong sources.list entry or malformed file)

E: Some index files failed to download. They have been ignored, or old ones used instead.
ERROR: Service 'uwsgi' failed to build: The command '/bin/sh -c apt-get update && apt-get install -y     libopenblas-dev     gfortran     libhdf5-dev     libhdf5-8     libgeos-dev' returned a non-zero code: 100


个的分隔符的


Was gonna ask if I should change the constructor so we don't have to provide an actual `Date()` and maybe embed the formatting into the database class?


AlexZorzi, don't try to cross the line...

It will be better for you.


while vue-cli-service is recognized on other branches
![image](https://user-images.githubusercontent.com/25534685/56593454-f37e3300-65b9-11e9-9722-4a0e217f1383.png)


The tests for directory module fails because it fails to create an AD directory with the following cmdlet:

New-SafeguardDirectory -Appliance 10.5.33.33 -ServiceAccountDomainName "a.sg.lab" -ServiceAccountName "administrator" -ServiceAccountPassword (ConvertTo-SecureString -AsPlainText "Test1234a" -Force) -Insecure -Verbose

It will eventually be redirected to New-SafegaurdAsset cmdlet.

It fails because running this cmdlet prompts for Network Address


is.


Successfully aliased the URL <https://shestakovaolgagithubio-n86c9bhl1.now.sh> to the following aliases.

* https://shestakovaolgagithubio-git-master.olgashestakova.now.sh
* https://suncork.net


@JuliaRegistrator register()


Registration pull request updated: [JuliaRegistries/General/233](https://github.com/JuliaRegistries/General/pull/233)

After the above pull request is merged, it is recommended that you create
a tag on this repository for the registered package version:
```
git tag -a v0.11.1 -m "<description of version>" 3c0237477864cd151ed824bdfbe02798c2f27ef1
git push origin v0.11.1
```


Registration pull request updated: [JuliaRegistries/General/233](https://github.com/JuliaRegistries/General/pull/233)

After the above pull request is merged, it is recommended that you create
a tag on this repository for the registered package version:
```
git tag -a v0.11.1 -m "<description of version>" 73e19585254b87d4d50e767532fa2102229a6fbb
git push origin v0.11.1
```


@matthiasbeyer ping?


Successfully aliased the URL <https://shestakovaolgagithubio-k3ydnlmwa.now.sh> to the following aliases.

* https://shestakovaolgagithubio-git-master.olgashestakova.now.sh
* https://suncork.net


@gskairyu The boolean `hasMoved` should not be set when the piece is calculating its **potential** moves, but when it has _actually_ moved from one space to another. This happens when the `boardSpace` the rook is on calls `transerPiece()`. See `Controller.java`'s `pieceMovementHandler()`: https://github.com/rj-pe/CIS434_Spring2019_G5/blob/8376e87757b24358a25e76e058825028cdb4952a/src/Controller.java#L343
You could try setting `hasMoved` in the `transferPiece()` method instead:
https://github.com/rj-pe/CIS434_Spring2019_G5/blob/8376e87757b24358a25e76e058825028cdb4952a/src/boardlogic/BoardSpace.java#L16


fixed, thanks


Cheater


Successfully aliased the URL <https://csb-4kk6prr6w-nf85uei77.now.sh> to the following aliases.

* https://csb-4kk6prr6w-git-master.jdcanado.now.sh
* https://www.confiatruckparts.com.br


Registration pull request created: [JuliaRegistries/General/234](https://github.com/JuliaRegistries/General/pull/234)

After the above pull request is merged, it is recommended that you create
a tag on this repository for the registered package version:
```
git tag -a v0.3.1 -m "<description of version>" 274a08c20b15cacf6de30d34f7187cd61fb2cedd
git push origin v0.3.1
```


CopyOnWriteArrayList


Привет! Использую твой шаблон для мониторинга rabbitmq, все сделано по инструкции, но при zabbix_agentd --print получаю следующие


引数多いし改行して❤


Need for clouds file systems.


Successfully aliased the URL <https://app-site-lzhhb40iu.now.sh> to the following aliases.

* https://app-site-git-master.fitt.now.sh
* https://fitt.app


On Tue, Apr 23, 2019 at 8:16 AM Michael Evangelista <
notifications@github.com> wrote:

> How was the update performed (manually or auto-updater) and what version
> were you on previously? We sometimes see that error with incomplete
> upgrades from Mura 6x to 7 latest.
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/blueriver/MuraCMS/commit/f15543883a9a47c26041dbd90c08ae8e2c5c1e5e#commitcomment-33277855>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AAGMFALRLSKHSDOUSXGRH33PR4R37ANCNFSM4HHXJPCQ>
> .
>
--
Matt Levine
Blue River Interactive Group, Inc.
www.blueriver.com
www.getmura.com


Successfully aliased the URL <https://csb-4kk6prr6w-avxqloc6k.now.sh> to the following aliases.

* https://csb-4kk6prr6w-git-master.jdcanado.now.sh
* https://www.confiatruckparts.com.br


Of you update one more the issue should go away.  You can also just
manually update the settingsManager.cfc

On Tue, Apr 23, 2019 at 8:34 AM Matt Levine <matt.levine@blueriver.com>
wrote:

>
>
> On Tue, Apr 23, 2019 at 8:16 AM Michael Evangelista <
> notifications@github.com> wrote:
>
>> How was the update performed (manually or auto-updater) and what version
>> were you on previously? We sometimes see that error with incomplete
>> upgrades from Mura 6x to 7 latest.
>>
>> —
>> You are receiving this because you authored the thread.
>> Reply to this email directly, view it on GitHub
>> <https://github.com/blueriver/MuraCMS/commit/f15543883a9a47c26041dbd90c08ae8e2c5c1e5e#commitcomment-33277855>,
>> or mute the thread
>> <https://github.com/notifications/unsubscribe-auth/AAGMFALRLSKHSDOUSXGRH33PR4R37ANCNFSM4HHXJPCQ>
>> .
>>
> --
> Matt Levine
> Blue River Interactive Group, Inc.
> www.blueriver.com
> www.getmura.com
>
--
Matt Levine
Blue River Interactive Group, Inc.
www.blueriver.com
www.getmura.com


@bot


Successfully aliased the URL <https://shestakovaolgagithubio-pmqr7ap04.now.sh> to the following aliases.

* https://shestakovaolgagithubio-git-master.olgashestakova.now.sh
* https://suncork.net


Aliasing failed with the following error:

~~~
Error! We couldn't verify the propagation of the DNS settings for karaage.me
~~~


[R/celda_functions.R:125:1:](https://github.com/campbio/celda/blob/011214af95f991a1de75e2795b73a7dd315f8487/R/celda_functions.R#L125) *style:* **Lines should not be more than 80 characters.**
```r
#' @param to Numeric vector. Unique values in the range of seq(K) that correspond
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/celda_functions.R:152:1:](https://github.com/campbio/celda/blob/011214af95f991a1de75e2795b73a7dd315f8487/R/celda_functions.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
#' @param to Numeric vector. Unique values in the range of seq(L) that correspond
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Yes, you're right.


Identity theft is not a joke! Millions of families suffer every year!


Can you also add a note to the entry for requests mock, saying that it is pinning this package? That gives us a better chance to notice when we update requests-mock that we need to remove this pin.


The problem with this is that it takes forever to complete the url requests so retrieving the attribute description takes a couple minutes


EmailValidator bør have sin egen klasse/fil, og navgivningen bør starte med Validate, da det er den funktion der testes


Samme her


Del op i klasser for hver enkel validator, og desuden mangler validator match at testes


[R/celda_functions.R:125:1:](https://github.com/campbio/celda/blob/9d6a7787f851cd21ae7b75033f3587b04c8ef2b6/R/celda_functions.R#L125) *style:* **Lines should not be more than 80 characters.**
```r
#' @param to Numeric vector. Unique values in the range of seq(K) that correspond
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/celda_functions.R:152:1:](https://github.com/campbio/celda/blob/9d6a7787f851cd21ae7b75033f3587b04c8ef2b6/R/celda_functions.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
#' @param to Numeric vector. Unique values in the range of seq(L) that correspond
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Setting state to `success` where context is `continuous-integration/jenkins/branch`.

To be ignored, it was aborted.


Setting state to `success` where context is `VSTS: device tests (TvOS)`.

Tests can be ignored because the bot had provisioning issues.


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-110-topperstation.pantheonsite.io/)

Created multidev environment [ci-110](https://dashboard.pantheon.io/sites/db5fb5e4-3225-46f0-b0a9-1cc803600c48#ci-110) for topperstation.


认真点啊


Rather than assigning an unused argument to a variable starting with 'dummy', you can start the argument with '_' as in '_menu'.  This will prevent pylint and codecov from complaining.  Slightly reduces the runtime overhead...


Det her tester ingenting, desuden bør edit user flyttes i setup funktionen


Obviously need correction on the Scheme (erase third column)


Dry coding for the win :D Thank you for this info.


Looks like you created a state machine around contexts. Can you define and ideally draw that somehow? What are the states in which a context can be? What are the state transitions, in particular on what exactly do they depend? Formalizing that will help you with correctness.


Successfully aliased the URL <https://experimentwithcom-mng8pgf09.now.sh> to the following aliases.

* https://experimentwith.com
* https://www.experimentwith.com
* https://experimentwithcom-git-master.jameswlane.now.sh


Setting state to `success` where context is `continuous-integration/jenkins/branch`.

To be ignored, it was aborted. And therefore tests could not be published.


Woh pas mal de changements au niveau de la classe Bonus ! GG mec


eventagg bruges ikke, substitute burde nok anvendes i stedet


Why assume the constructor will only ever throw things derived from `std::exception`?  The idiomatic way to do cleanup and re-throw the exception is:
```
try
{
    // code that may throw goes here
}
catch (...)
{
    // cleanup goes here
    throw;
}
```

The `throw` without an argument in a `catch` block re-throws the same exception object.  (Yes, the other way to do this is with local classes that perform cleanup in their destructors .)


Successfully aliased the URL <https://siwen-next-site-9899a90fo.now.sh> to the following aliases.

* https://siwen.site
* https://siwen-next-site-git-master.rswmmo.now.sh


perché??? :'(


[R/celda_functions.R:125:1:](https://github.com/campbio/celda/blob/9c228e93e8e5da927afa7b0c9d21c03ba0261a1b/R/celda_functions.R#L125) *style:* **Lines should not be more than 80 characters.**
```r
#' @param to Numeric vector. Unique values in the range of seq(K) that correspond
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/celda_functions.R:152:1:](https://github.com/campbio/celda/blob/9c228e93e8e5da927afa7b0c9d21c03ba0261a1b/R/celda_functions.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
#' @param to Numeric vector. Unique values in the range of seq(L) that correspond
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


I'll try to replace it with an assert


@jlantz Interesting; where is this being used/required?


I did remove setting session.highcharts_temp to None, because it made no sense to me at first glance, but I had to find out the hard way that this was a bad idea, because now always the same chart would be rendered. No biggy!


Will have a look later. I am not sure this is the latest commit I have done.
@Tafoid:OS/Build/Compiler?


Setting state to `success` where context is `continuous-integration/jenkins/branch`.

WatchOS crash is known: https://github.com/xamarin/maccore/issues/581 Timeouts are unrelated to the commit.


@jgerigmeyer by the ImageField. We're not sure why Pillow was already installed in our existing deployments but Jason was having trouble due to it missing in a new one.


The `S` OPS are expensive - SLOAD, SSTORE, so you can optimize a little with

```
uint balance = balances[msg.sender];
```
Then you can use the memory var in later steps because it's cheaper to inspect it.


Those tests need to leverage the `CoreBulkFeature` to wait for action completion


Would prefer if you prefix mobile-targeting styles with `body[class="page-responsive"]` instead, precicely because we don't know for certain where the mobile breakpoints are, but IIRC, it was 768px in the past.


Could this just return the contents of `all` sorted by distance?


I'm fine either way, so I'll use `addon_`


Ah -- I think it was here before, then removed at some point by mistake.


Successfully aliased the URL <https://app-site-o2s5p2rtg.now.sh> to the following aliases.

* https://app-site-git-master.fitt.now.sh
* https://fitt.app


That's a valid point. I'll work on it there. Thanks.

On Tue, Apr 23, 2019, 11:28 AM r.j. <notifications@github.com> wrote:

> @gskairyu <https://github.com/gskairyu> The boolean hasMoved should not
> be set when the piece is calculating its *potential* moves, but when it
> has *actually* moved from one space to another. This happens when the
> boardSpace the rook is on calls transerPiece(). See Controller.java's
> pieceMovementHandler():
> https://github.com/rj-pe/CIS434_Spring2019_G5/blob/8376e87757b24358a25e76e058825028cdb4952a/src/Controller.java#L343
> You could try setting hasMoved in the transferPiece() method instead:
>
> https://github.com/rj-pe/CIS434_Spring2019_G5/blob/8376e87757b24358a25e76e058825028cdb4952a/src/boardlogic/BoardSpace.java#L16
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/rj-pe/CIS434_Spring2019_G5/commit/a1bd822f1fe58b99f5b460bc674b8d38d4e24e40#commitcomment-33278032>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AIVBZHFHNPIXEWYC6H46JCLPR4TIBANCNFSM4HHZCWSA>
> .
>


THIS IS SUGOI GAME!!!


I do not get it, `}` is needed, right?


You made a mistake :)


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* https://jameswlane.com
* https://www.jameswlane.com
* https://jameswlanecom-git-master.jameswlane.now.sh


Setting state to `success` where context is `continuous-integration/jenkins/branch`.

WatchOS crash is known: https://github.com/xamarin/maccore/issues/581 The other failure already has a fix: https://github.com/xamarin/xamarin-macios/pull/5940


this is required because the default implementation of projection.projectPoint returns a Vector3Like (AKA an object containing x,y,z as number), but THREE.Geometry.vertices expects a THREE.Vector3.


Good comments really help


I would like to suggest to name it MetricsCache, without 'Manager'. The postfix 'Manager' is/should reserved for Actors/services (most of the time :wink: ).


If there are apps looking up missing headers with no default and they expect that to keep working, then we can put the default back in and remove the throw since it will never get hit.  To fix any apps that started erroring, they would need to begin passing a default value anywhere the header didn't exist.