[R/DAISIE_area_params.R:32:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_area_params.R#L32) *style:* **Lines should not be more than 80 characters.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:32:93:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_area_params.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
                                                                                ^
```
[R/DAISIE_area_params.R:37:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_area_params.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:37:83:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_area_params.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
                                                                                ^
```
[R/DAISIE_area_params.R:41:13:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_area_params.R#L41) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/DAISIE_area_params.R:60:28:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_area_params.R#L60) *style:* **Trailing whitespace is superfluous.**
```r
  list(max_area = max_area,
                           ^
```
[R/DAISIE_create_island.R:5:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_spec matrix with species on island (state of system at each time point)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:7:75:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' @param keep_final_state logical indicating if final state of simulation
                                                                          ^
```
[R/DAISIE_create_island.R:10:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list with the island information, composed stt table, branching times of extant
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:12:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L12) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:12:44:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
DAISIE_create_island <- function(stt_table,
                                           ^
```
[R/DAISIE_create_island.R:13:44:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L13) *style:* **Trailing whitespace is superfluous.**
```r
                                 totaltime,
                                           ^
```
[R/DAISIE_create_island.R:14:46:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
                                 island_spec,
                                             ^
```
[R/DAISIE_create_island.R:17:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L17) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:18:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:18:104:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
                                                                                ^
```
[R/DAISIE_create_island.R:19:27:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L19) *style:* **Commas should always have a space after.**
```r
  if (length(island_spec[,1]) == 0) {
                          ^
```
[R/DAISIE_create_island.R:20:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L20) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:21:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L21) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:33:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L33) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:34:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L34) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:35:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L35) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:37:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L37) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:45:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L45) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:47:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L47) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:49:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "branching time (BP)"] <- totaltime - as.numeric(island_spec[, "branching time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:50:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "Colonisation time (BP)"] <- totaltime - as.numeric(island_spec[, "Colonisation time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:51:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L51) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:58:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L58) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:60:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L60) *style:* **Lines should not be more than 80 characters.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:60:65:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L60) *style:* **Only use double-quotes.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
                                                                ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:61:60:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L61) *style:* **Trailing whitespace is superfluous.**
```r
      number_colonists_present <- length(colonists_present)
                                                           ^
```
[R/DAISIE_create_island.R:62:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L62) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:63:35:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L63) *style:* **Trailing whitespace is superfluous.**
```r
      island_clades_info <- list()
                                  ^~
```
[R/DAISIE_create_island.R:65:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:65:58:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L65) *style:* **Only use double-quotes.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:65:104:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L65) *style:* **Commas should always have a space after.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:65:105:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L65) *style:* **Trailing whitespace is superfluous.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:66:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L66) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:67:37:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L67) *style:* **Only use double-quotes.**
```r
        if (class(subset_island) != 'matrix') {
                                    ^~~~~~~~
```
[R/DAISIE_create_island.R:71:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L71) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:73:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L73) *style:* **Lines should not be more than 80 characters.**
```r
                                                      island_spec = subset_island,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:75:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
                                                      keep_final_state = keep_final_state)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:81:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L81) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:84:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L84) *style:* **Lines should not be more than 80 characters.**
```r
                       taxon_list = island_clades_info, island_spec = island_spec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:88:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_create_island.R#L88) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_data.R:2:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:7:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:12:34:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
#' the following elements.\cr \cr
                                 ^
```
[R/DAISIE_data.R:47:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:52:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:92:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L92) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:96:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L96) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:103:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L103) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:124:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L124) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:27:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L125) *style:* **Trailing whitespace is superfluous.**
```r
#' for the Galapagos data.
                          ^
```
[R/DAISIE_data.R:127:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L127) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:158:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L158) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:161:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L161) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:165:42:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{$island_age} - the island age\cr
                                         ^
```
[R/DAISIE_data.R:197:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L197) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:247:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L247) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:256:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L256) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:270:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L270) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:277:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_data.R#L277) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:2:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:7:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:10:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:86:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_dataprep.R:87:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L87) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:88:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:89:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L89) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:90:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L91) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:98:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L98) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:100:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L100) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:100:82:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L100) *style:* **Trailing whitespace is superfluous.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
                                                                                ^
```
[R/DAISIE_dataprep.R:101:79:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L101) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:104:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L104) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:113:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L113) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:114:80:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L114) *style:* **Trailing whitespace is superfluous.**
```r
#' ### Create Galapagos data object with a distinct macroevolutionary processes
                                                                               ^
```
[R/DAISIE_dataprep.R:115:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L115) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:79:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L116) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:117:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L117) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L118) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:128:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L128) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Lines should not be more than 80 characters.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:17:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Use <-, not =, for assignment.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                ^
```
[R/DAISIE_dataprep.R:130:38:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                     ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Variable or function name should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:51:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                  ^
```
[R/DAISIE_dataprep.R:130:74:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                         ^
```
[R/DAISIE_dataprep.R:130:131:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                                ^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L131) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_dataprep.R:132:24:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L132) *style:* **Use <-, not =, for assignment.**
```r
  number_colonisations = nrow(datatable)
                       ^
```
[R/DAISIE_dataprep.R:133:12:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L133) *style:* **Use <-, not =, for assignment.**
```r
  datalist = list()
           ^
```
[R/DAISIE_dataprep.R:134:13:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L134) *style:* **Variable or function name should be snake_case.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:134:28:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L134) *style:* **Put spaces around all infix operators.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
                          ~^~~
```
[R/DAISIE_dataprep.R:135:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L135) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_dataprep.R:136:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L136) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 1)
    ^
```
[R/DAISIE_dataprep.R:137:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L137) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:138:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L138) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:138:19:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L138) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                  ^
```
[R/DAISIE_dataprep.R:138:36:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                  ~^~
```
[R/DAISIE_dataprep.R:138:48:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L138) *style:* **Commas should always have a space after.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                               ^
```
[R/DAISIE_dataprep.R:138:59:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                         ~^~
```
[R/DAISIE_dataprep.R:138:60:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L138) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                           ^
```
[R/DAISIE_dataprep.R:140:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L140) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 2)
    ^
```
[R/DAISIE_dataprep.R:141:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L141) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:142:32:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L142) *style:* **Use <-, not =, for assignment.**
```r
    number_type2_colonisations = length(list_type2_clades)
                               ^
```
[R/DAISIE_dataprep.R:143:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L143) *style:* **Lines should not be more than 80 characters.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:143:32:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L143) *style:* **Use <-, not =, for assignment.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
                               ^
```
[R/DAISIE_dataprep.R:145:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L145) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:146:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L146) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:146:25:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L146) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:146:41:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L146) *style:* **Put spaces around all infix operators.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:147:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L147) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:147:25:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L147) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:147:41:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L147) *style:* **Put spaces around all infix operators.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:149:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L149) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:149:25:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L149) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:150:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:150:25:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L150) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:152:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:19:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L152) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
                  ^
```
[R/DAISIE_dataprep.R:155:3:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L155) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:156:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:156:23:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                      ^
```
[R/DAISIE_dataprep.R:156:71:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                      ^
```
[R/DAISIE_dataprep.R:156:86:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:107:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:117:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:147:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:157:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L157) *style:* **Lines should not be more than 80 characters.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:157:14:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L157) *style:* **Use <-, not =, for assignment.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
             ^
```
[R/DAISIE_dataprep.R:157:77:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                            ^
```
[R/DAISIE_dataprep.R:157:97:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                                ^
```
[R/DAISIE_dataprep.R:158:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L158) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:159:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:7:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
      ^
```
[R/DAISIE_dataprep.R:159:21:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                   ~^~
```
[R/DAISIE_dataprep.R:159:33:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                ^
```
[R/DAISIE_dataprep.R:159:46:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:70:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                     ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~
```
[R/DAISIE_dataprep.R:159:92:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:117:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:132:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:132:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:160:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:163:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ~^~
```
[R/DAISIE_dataprep.R:159:164:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~
```
[R/DAISIE_dataprep.R:159:168:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L159) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:160:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L160) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:161:7:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L161) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(the_brts) == 1)
      ^
```
[R/DAISIE_dataprep.R:161:30:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L161) *style:* **Trailing whitespace is superfluous.**
```r
    if(length(the_brts) == 1)
                             ^
```
[R/DAISIE_dataprep.R:162:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L162) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:163:1:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L163) *style:* **Lines should not be more than 80 characters.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:163:41:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L163) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                        ^
```
[R/DAISIE_dataprep.R:163:56:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L163) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                                       ^
```
[R/DAISIE_dataprep.R:163:69:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L163) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,min(the_brts,island_age - epss))
                                                                    ^
```
[R/DAISIE_dataprep.R:165:7:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L165) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(the_brts) > 1)
      ^
```
[R/DAISIE_dataprep.R:165:29:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
    if(length(the_brts) > 1)
                            ^~
```
[R/DAISIE_dataprep.R:166:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L166) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:167:41:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L167) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,the_brts)
                                        ^
```
[R/DAISIE_dataprep.R:167:56:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L167) *style:* **Commas should always have a space after.**
```r
      datalist[[i + 1]]$branching_times = c(island_age,the_brts)
                                                       ^
```
[R/DAISIE_dataprep.R:169:7:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L169) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Non_endemic_MaxAge")
      ^
```
[R/DAISIE_dataprep.R:169:20:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L169) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Non_endemic_MaxAge")
                   ^
```
[R/DAISIE_dataprep.R:170:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L170) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:171:30:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L171) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 1
                             ^
```
[R/DAISIE_dataprep.R:173:7:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L173) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(datatable[i,"Status"] == "Endemic")
      ^
```
[R/DAISIE_dataprep.R:173:20:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L173) *style:* **Commas should always have a space after.**
```r
    if(datatable[i,"Status"] == "Endemic")
                   ^
```
[R/DAISIE_dataprep.R:174:5:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L174) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:175:30:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L175) *style:* **Use <-, not =, for assignment.**
```r
      datalist[[i + 1]]$stac = 2
                             ^
```
[R/DAISIE_dataprep.R:176:9:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L176) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if(max(the_brts)>island_age){
        ^
```
[R/DAISIE_dataprep.R:176:23:](https://github.com/rsetienne/DAISIE/blob/77e54f5b095a9d1137a48e3bdc724f84aef5884a/R/DAISIE_dataprep.R#L176) *style:* **Put spaces around all infix operators.**
```r
      if(max(the_brts)>island_age){
                     ~^~
```


Результат:
Continues inner loop at i=1, j=1
Running i = 1 j = 2
Running i = 1 j = 3


Полный результат выполнения:
Continues inner loop at i=1, j=1
Running i = 1 j = 2
Running i = 1 j = 3
Breaks inner loop at i=2, j=1:
Running i = 3 j = 1
Running i = 3 j = 2
Running i = 3 j = 3


better, good progress. Let's focus on tests before to spend time on further enhancments.


it is better


Good clever Francis


No worries Iain, glad to be of help.

Cheers,
Mircea


Please use variables for colors


Yes, that was my point. JrdStatement was intentionally separated from request, there's no need to break the work already done.


Successfully aliased the URL <https://tietgen-festival-107f5n391.now.sh> to the following aliases.

* https://www.tietgenfestival.dk
* https://tietgenfestival.dk
* https://tietgen-festival-git-master.akd-io.now.sh


>all ~10-15-20 C++ targets we support

Do we really? Sounds awful. Why not to drop everything except the latest suitable versions?


Hi! Could this have any influence over netplay?

Best Regards.


shouldn't this one have a modifies clause as well? otherwise it'll be hardly usable by clients


same here for a modifies clause? why is the post-condition repeating the pre-condition?


a minor remark (I think I'm looking at this code for the first time, I don't know if others have before)... (and not necessarily related to your changes, Aseem, but perhaps for @wintersteiger?)

the liveness of buf should follow from the modifies clause, and disjointness is not a stateful predicate, so it should be preserved automatically and shouldn't need to be repeated in the post-condition


Yes, the EM-DASH '—' — is incorrect in this place as it is merely a delimiter like comma or paranthesis.
Within Names it should really be a NON-BREAKING-HYPHEN '‑' (‑) instead of the normal minus sign.
For number ranges (i.e. 1888–1896) an EN-DASH '–' (–) shall be used.
For separation of senses the HORIZONTAL BAR '―' (―) is to be used.
For regular HYPHEN it would be good to use '‐' (‐) to distinguisch it from the minus sign, but that maybe goes to far.

I will systematically scan all files for proper DASH placement and correct that.
Another item on my to-do list...


My compiler complains here, and mentions:

```
In file included from /Users/jkeiren/Repositories/mCRL2/tools/developer/generatelts/generatelts.cpp:12:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/iostream:38:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/ios:216:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/__locale:15:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/string:500:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/string_view:176:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/__string:56:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/algorithm:644:
/Library/Developer/CommandLineTools/usr/include/c++/v1/memory:2335:5: warning: delete called on 'mcrl2::lps::todo_set' that is abstract but has non-virtual destructor [-Wdelete-non-virtual-dtor]
delete __ptr;
^
/Library/Developer/CommandLineTools/usr/include/c++/v1/memory:2648:7: note: in instantiation of member function 'std::__1::default_delete<mcrl2::lps::todo_set>::operator()' requested here
__ptr_.second()(__tmp);
^
/Library/Developer/CommandLineTools/usr/include/c++/v1/memory:2602:19: note: in instantiation of member function 'std::__1::unique_ptr<mcrl2::lps::todo_set, std::__1::default_delete<mcrl2::lps::todo_set> >::reset' requested here
~unique_ptr() { reset(); }
^
/Users/jkeiren/Repositories/mCRL2/libraries/lps/include/mcrl2/lps/explorer.h:602:38: note: in instantiation of member function 'std::__1::unique_ptr<mcrl2::lps::todo_set, std::__1::default_delete<mcrl2::lps::todo_set> >::~unique_ptr' requested here
case lps::es_breadth: return std::unique_ptr<todo_set>(new breadth_first_todo_set(init));
^
```

This actually leads to a crash on MacOS.

Addin the virtual destructor:

```
virtual ~todo_set() {}
```
resolves the issue for me.


TeamCity Identity and Access Management / identity-hostedpages [Build 589](https://teamcity.nice.org.uk/viewLog.html?buildId=52116&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) is now running


TeamCity Identity and Access Management / identity-hostedpages [Build 588](https://teamcity.nice.org.uk/viewLog.html?buildId=52115&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) is now running


Hi,I want to know that have you desolved this data problem.Thank you very much!


Successfully aliased the URL <https://leerob-22tb9wj0e.now.sh> to the following aliases.

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My idea right now is to plug an extra module that modifies that fiscal position for those who need this special condition, setting IGIC taxes instead of the current ones. About the IGIC taxes, it can come through 2 methods:

- For those living in Canarias, they are directly needed.
- For those living outside Canarias, but with this condition to pay IGIC due to the permanent warehouse there.

I'm wondering if we can have that taxes included, but deactivated by default (and being created the same way in the chart template installation process), and then:

- For the first case, we add a 4th Spanish chart template that includes these taxes activated (and maybe other peninsular ones deactivated).
- For the second, having an option to activate them.

@jco-odoo are you coming to Spanish code sprint to discuss all of this?


some tests failed:
failure: https://travis-ci.org/stellar/stellar-core/builds/514105536?utm_source=github_status&utm_medium=notification


TeamCity Identity and Access Management / identity-hostedpages [Build 588-r954903E](https://teamcity.nice.org.uk/viewLog.html?buildId=52115&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) outcome was **SUCCESS**
Summary: Tests passed: 61 Build time: 00:03:36


TeamCity Identity and Access Management / identity-hostedpages [Build 589-r2FF8BD1](https://teamcity.nice.org.uk/viewLog.html?buildId=52116&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) outcome was **SUCCESS**
Summary: Tests passed: 61 Build time: 00:03:34


Hadn't realized it until now, but removing the contribution points broke our styling settings. See #181.


补一个 https://github.com/ant-design/ant-design/pull/15791


Trying really hard to figure out how to delete this...


When you have a moment, could you add our BLGC coin please? Thank you!

Link: https://www.reddit.com/r/Stellar/comments/b4xvct/blogcoin_now_move_to_stellar/

Website: http://blogcoin.online

Toml :

http://blogcoin.online/.well-known/stellar.toml

Logo BlogCoin:

http://blogcoin.online/images/coins.png

Explorer: https://stellar.expert/explorer/public/asset/BLGC-GDFBN2PUEKRSLVWXOROR635FBHMFBW5VNGVOALR4PXWSB2HLHHJQXRTY?filter=trustlines


This isn't true?  From the default config file...
```
# Next decide what directories/files you want in the database. Aide
# uses a first match system. Put file specific instructions before generic
# matches. e.g. Put file matches before directories.
```


The logic that follows will defined the `exclude`s *after* though.


### Ok

Just test.


初步完成了一些api


It's already been removed in the next commit and replaced by the download option for now. That should suffice for now.


Emm. This won't work for EVO.


create md


Then make a pull request instead of trying to draw my attention to another spoon.


@fabic What about using this one ?
https://github.com/jmoiron/humanize


Already fixed: https://github.com/octobercms/library/commit/5890e30146307fe40866b5a9bc43cbacee61566b


Sure, make sense. I'll do another pass over it and remove all of the unnecessary ones.


@Neves-P: I enjoy the commit message :+1:


ARDIS DATASET


I give up. Cannot figure out how to undo #3 deletion.  Argh.


As in `modifies B.loc_none h0 h1`?


please indicate wish strategy is used in generated value (AUTO)


Comments are working!


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* https://api-og-image.zeit.sh
* https://og-image.now.sh
* https://og-image-git-master.zeit.sh


Validation annotations don't fit Entities. They have to be written in Dtos only.
Please remove validation annotation and replace it by a jpa mapping annotation (@column(nullable= false)


same as above


April 1, 2019 is the usual format.