Hi,

I forgot to update it. It was not really transferable the script because of chromosome size format.
I have uploaded a new version that should be more transferable and relies only on HiC-Pro outputs

Have a try and tell me if you experience any further problems.

Example of use:
./hicpro2catch.sh -i hicpro.matrix -b binningsize -f HiCPro_conversionFile

HiCPro_conversionFile: File containing genomic coordinate corresponding to bin number (the file *_abs.bed that you find it in raw matrix directories from HiC-Pro output)

Hope this helps
Zhan


es existiert keine datei resources/application.conf bei uns. hätte ich sie erstellen sollen?


pws kai den to ebales auto sto makepkg.conf?


missing case for when words are not contractions and inserting those words into the results map


Uh, yeah, that needs to be one line down, outside of the if


Thanks, have updated.


Okay, so I merged be858df83ad1521fb1ec321865cb218b3d2c6e2a


Oh, my, gosh.
It's getting EVEN uglier!


FYI https://specifications.freedesktop.org/basedir-spec/basedir-spec-latest.html

Please remember the guidance about defaults and directory creation permissions.


Uploaded test apks for [armv7](https://download.opengis.ch/qfield/ci-builds/qfield-dev--d0374db67bb8081bb5f4daa3b375ed313c4e303e-armv7-X.apk) and [x86](https://download.opengis.ch/qfield/ci-builds/qfield-dev--d0374db67bb8081bb5f4daa3b375ed313c4e303e-x86-X.apk) (Android 5 versions [armv7](https://download.opengis.ch/qfield/ci-builds/qfield-dev--d0374db67bb8081bb5f4daa3b375ed313c4e303e-armv7-5.apk) and [x86](https://download.opengis.ch/qfield/ci-builds/qfield-dev--d0374db67bb8081bb5f4daa3b375ed313c4e303e-x86-5.apk)


DeepCode analyzed this commit.
There are 1 new warning and 3 new info reports.

[Click](https://www.deepcode.ai/app/gh/ebhardjan/LinterConfigsTest_/89ec604066416c76c3218f8585708b34996b422f/ebhardjan/LinterConfigsTest_/00ba4889dffc2123b67cf81cdc142b54aebf4bd3/_/%2F/code/) to see more details.


Ne brini se oko updatea, dalje ću ja nastaviti!!


Successfully aliased the URL <https://sensors-sensibility-ki25225un.now.sh> to the following aliases.

* https://sensors-sensibility.schalela.now.sh
* https://sensors-sensibility-git-master.schalela.now.sh


Great that you found the source of the problem.
However this renaming of tables has quite some huge implications.
Is it really impossible to have a Table called `Table` in postgreSQL?
Maybe we can just quote the Table name instead of renaming the table.
We have Installations and also backends in other languages like C# so such structural changes should be avoided if possible. My first guess would be:
```
@javax.persistence.Table(name = "'TABLE'")
```
(please not the single quotes in the double quotes)


Hi! Can you please tell me what exactly is the -b binningsize file?


@chaukap I think you mean once per iteration here? Not once per simulation?


[
![tou](https://user-images.githubusercontent.com/50020455/58421540-c5ad7200-80c2-11e9-8209-449682e13b7e.png)
](url)


Ellipse … à la place de trois points ...


@chaukap seems like the [] need to be removed from above comments?


Added example for sensorSleep() but the merge failed?


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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

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That's great!


Successfully aliased the URL <https://nabbyl-klmbmvkks.now.sh> to the following aliases.

* https://nabbyl.fernahh.now.sh
* https://nabbyl-git-master.fernahh.now.sh


You need to specify the directions to which you project on. These
directions are determined by the kind of applications you are interested
in. Any projection function will be a direction implementation to the
projected matrix explained in Linear Algebra.

MerhanA <notifications@github.com> writes:

> salam alikom
>
> thanks Dr for your replay, in the second part i asked about any ready made
> function in any programming language such as python for example used for
> projection? those functions have parameters to specify the number of
> projection levels for use and perform the projection automatically.
>
> the link of my comment:
> https://github.com/DrWaleedAYousef/Teaching/commit/4792f31f22b396258388a952df2c8e388f2c8dc2#commitcomment-33689753
>
> On Mon, May 27, 2019 at 2:16 PM Waleed Yousef <notifications@github.com>
> wrote:
>
>>
>> Projection can be for many reasons, including visualization,
>> compression, more accurate analysis, easier implementation for decision
>> functions, etc.
>>
>> I do not understand the second part of the question.
>>
>>
>> p.s. I am just wondering how I receive this message on my email and
>> cannot find it on Git!! Can you please send me the link of this issue?
>>
>>
>> MerhanA <notifications@github.com> writes:
>>
>> > Salam Alikom, Do we use the projection matrix to reduce the dimension in
>> order to visualize the data only or there is another reason?
>> > Also is there ready-made projection matrix function or we have to
>> perform it mathematically?
>> >
>> > —
>> > You are receiving this because you authored the thread.
>> > Reply to this email directly, view it on GitHub, or mute the thread.*
>>
>> —
>> You are receiving this because you commented.
>> Reply to this email directly, view it on GitHub
>> <https://github.com/DrWaleedAYousef/Teaching/commit/4792f31f22b396258388a952df2c8e388f2c8dc2?email_source=notifications&email_token=ALO5REXMC3YJOU5MB2L5WDLPXPGKDA5CNFSM4HPUIN52YY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBAEEEZ#commitcomment-33689753>
> ;,
>> or mute the thread
>> <https://github.com/notifications/unsubscribe-auth/ALO5RETDZFIPXR4I6PQXFY3PXPGKDANCNFSM4HPUIN5Q>
>> .
>>
>
> --
> Merhan Ahmed
> Computer and Control Engineer
> Suez Canal University Specialized Hospital
> email: eng.merhan@gmail.com
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub, or mute the thread.*


FYI `logger.exception` log the first parameter and the whole traceback.
Your change doesn't fix the issue of showing a sql error to the user. (You should probably catch DataError in the graphql LoggingMiddleware and raise a friendly localized GraphqlError instead)
And actually you shouldn't do this change here. `capture_exception()` is generally called followed by a `logger.exception` already (see for example `assembl/tasks/notify.py`). So doing a `logger.exception` here will result of the error to be logged twice.


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/feedback-on-the-new-review-queue/112837/99


<body>


why?


убрать лишние пробелы


et autorisation CORS


# Improve the code


Yes, no problem. The pipeline does not need ref. Genome.
Good luck!
Yibo

On Mon, May 27, 2019, 6:17 AM marifasa <notifications@github.com> wrote:

> Hi, I have my FASTQ but I do not have a reference genome, could I use this
> pipeline to find chloroplast SNPs? Thanks!
> Mariana
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/ybdong919/3GenomeSNP_pipeline/commit/c609192e3cb99a13c63c2ec652e3f3aeee484d40?email_source=notifications&email_token=AD7MFAKUKSZF54LRO3IXQBLPXO7OFA5CNFSM4HP263IKYY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBAEDNJ#commitcomment-33689001>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AD7MFAMW36HODVUCKVQUYQDPXO7OFANCNFSM4HP263IA>
> .
>


засовывать ссылку в кнопку - бессмыслица
либо кнопка, либо ссылка


@tcely for `nnn` I have chosen to use `~/.config/nnn`. It's simpler.

Also, the the perms used are at https://github.com/jarun/nnn/blob/master/src/nnn.c#L2541

Can you confirm if that's fine?


achso, sobald man 3 sachen fixt ist man der main dev, klar

lern mal programmieren, dann können wir weiter reden


-b specifies the binning size of the HiC-Pro output matrix.
if your matrix is binned at 20kb, then use:
-b 20000


Successfully aliased the URL <https://nabbyl-lflzicn0x.now.sh> to the following aliases.

* https://nabbyl.fernahh.now.sh
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Successfully aliased the URL <https://ssr-demo-1jknag2tm.now.sh> to the following aliases.

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OK, we're bypassing reading to `_buf` entirely. All data comes directly to the output buffer.


再次安装软件中心错误


IIUC this won't happen if `crimson-msgr` always does `::read_exactly2()` – without mixing with i.e. the prefetching `::read_exactly()` variant. Still, page faults (due to touching `out`) are expected for writes (filling with new objects); for overwrites the memory allocator might have a chance to avoid them.


Package file


@jarun The spec recommends 0700.


Just for development/PoC this looks acceptable. Though, asserting could be more expressive IMHO.


@chaukap fix typo here


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


look at the code for pos.attackers_to. This is a costly computation.


This is massive! And this is just too good. Awesome, awesome job bro. I learned a lot going through this PR. Great job!


## Standard Output
```

```
## Error Output

```

```


> > > After update and reboot mb, in my db I can see the data stored evry 30 sec. It's a bug?
> >
> >
> > Check the folder permissions on mbridge, usually should be 775 or 2775, unless your host places restrictions on the permissions and says they have to be 755. Also, might have to create the mbridge/lastupdated.php file yourself if your host won't let you fix the folder permissions. mbridge/lastupdated.php's permissions should be 664 or 644 if host restricts
> > Really need to add some better and more error messages....
>
> Ok, the problem is that I'm using old API. I rebooted mb from the console. I need to do something else?

If you're using a nano, there's a big that was fixed on 5/25 that prevented it from actually rebooting. If the version on the nano says it's older than the 25th, pull the power and batteries on your console to force the nano to reboot. Be sure to set the time on the console again.


:+1: for list and specifying the default. Let's keep `evil-mc` in the snippet as theoretically it's the better supported one.


I found out this is possible. You can create table with
 `create table "table" `
but then table name is case sensitive. Of course if no other DB type have case sensitive names it shouldn't be a problem.


@tcely I am settling for 755. Neither too restrictive nor too permissive. It's also the permission of my current `~/.config`.


If you want to check that Bishop on s is not attacked by opponent bishop, you can simply use
!(pos.pieces(Them, BISHOP) & b)

If you want to check that Bishop on s is not attacked by opponent pawn, you can simply use
!(MobilityArea[Us] & s)


"too small" instead of "too less" :slightly_smiling_face:


## Standard Output
```
sh: wtf: command not found

```
## Error Output
sh: wtf: command not found

```
sh: wtf: command not found

```


"too small"


![](https://github.trello.services/images/mini-trello-icon.png) [Dummy card](https://trello.com/c/hHVhPHRQ/10-dummy-card)


Successfully aliased the URL <https://portfolio-99pooyjgr.now.sh> to the following aliases.

* https://portfolio.suleimanov150796.now.sh
* https://portfolio-git-master.suleimanov150796.now.sh


can it work,when the server is offline?


Successfully aliased the URL <https://gatsby-now-i2muqx3ho.now.sh> to the following aliases.

* https://gatsby-now.newgraph.now.sh
* https://gatsby-now-git-master.newgraph.now.sh


C'est assez variable, souvent en soirée. J'suis toujours dessus au maximum, essayant de catcher et saluer les gens de passage. Pour ce qui pourrait « bloquer » la PR, envie d'essayer avant d'en juger, donc j'ai envie de dire à reporter aussi ici. Qui plus est, j’ai bien plus de facilité pour le moment à tester ce qui est chez toi sur une branche à part comme là, que d’aller cherry-pick des commits de ta branche perso pour ton serveur en prod. Je dis ça car il y a énormément de choses intéressantes  à reprendre à mon avis !

Je pense qu’il faut encore ajouter la classe `table-sm` (small) sur la table, on voit plus de lignes d’un coup :
![image](https://user-images.githubusercontent.com/10353895/58422687-83b90780-8093-11e9-89c0-3bd4ccefaa87.png)


`AUTOMATED COMMENT FROM yaml-tests, running on `localhost.localdomain
#### Standard Output
```
sh: wtf: command not found

```
#### Error Output
sh: wtf: command not found

```
sh: wtf: command not found

```


Pour la mise en page du formulaire de recherche :
- se positionner sur la démo : https://demo.geneweb.tuxfamily.org/gw7/gwd?b=grimaldi&lang=fr&m=H;v=advanced
- réduire la taille de la fenêtre en moitié de largeur avec `Windows` + `<-` (ou bien à la main)
![advanced](https://user-images.githubusercontent.com/40659642/58422725-a2b79980-8093-11e9-913d-fe6cb09c58f9.png)

Faire la même opération sur mon site : http://lledieu.org/?m=H;v=advanced


LGTM


Thank you for maintaining this repo.
Please make a new tag for updated Docker images, or make use of feature flags (like environment variables) so the backward compatibility will not be broken.
For example, this great feature break down some of  our CI/CD pipelines, since we manually override the nginx.conf with file named /app/nginx.conf, while using tiangolo/uwsgi-nginx-flask:python3.6-alpine3.7 image for more than a year.
TNX


`AUTOMATED COMMENT FROM provision-ops/yaml-tests, running on localhost.localdomain`
:x: Test Failed: pwd && wtf
#### Standard Output
```
sh: wtf: command not found

```
#### Error Output
```
sh: wtf: command not found

```


Oui je viens de voir ça !! Faut virer les labels — ça m’embête toujours un peu pour l'accessibilité !! —,  et mettre des inputs inline sauce BS4. J’essaye d'améliorer cette partie.


Good stuff, please add test scripts; you can also work on the UI if you want.


Могу удалять начальную или конечную станцию, а по условиям задачи, этого сделать нельзя


Successfully aliased the URL <https://portfolio-nnpw0ocjp.now.sh> to the following aliases.

* https://portfolio.suleimanov150796.now.sh
* https://portfolio-git-master.suleimanov150796.now.sh


I know there's no such thing as a pointless question so ill ask what is the benefits or extra stuff with all these changes? tia


Раздели прицепление и отцепление на два метода, это понадобится для след. задания


i would expect this to be prettified properly


`AUTOMATED COMMENT FROM provision-ops/yaml-tests, running on localhost.localdomain`
:x: Test Failed: pwd && wtf
    sh```
    /home/jon/Projects/provision

    ```


`AUTOMATED COMMENT FROM provision-ops/yaml-tests, running on localhost.localdomain`
:x: Test Failed: pwd && wtf
    ```sh
    /home/jon/Projects/provision

    ```


# Specs execution successful
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the idea is not that people will get used to this option.  the commandline is only so we can quietly try it out with people very fermiliar with buildsystem, and when we feel it works,  we turn it on everywhere


34? очень сложно, лучше сделать
```ruby
while 100 > result = (fib[-1] + fib[-2])
  fib << result
end
```


You're welcome.


NIE DZIAŁA


Realises #10


You changed the documentation but did not publish to the npm a package which contains terser -> https://github.com/insin/nwb/blob/master/CHANGES.md? So you had to advise people to use their own builds instead of fetching from npm.


Successfully aliased the URL <https://portfolio-4aj5p9mo9.now.sh> to the following aliases.

* https://portfolio.suleimanov150796.now.sh
* https://portfolio-git-master.suleimanov150796.now.sh


Hi @rohitggarg-qb
0.x is not supported.

Could you try https://github.com/k1LoW/awspec/pull/426#issuecomment-449624112 ?


`AUTOMATED COMMENT FROM provision-ops/yaml-tests, running on localhost.localdomain`
:x: Test Failed:
  ```sh
  $ pwd && wtf
  /home/jon/Projects/provision

  sh: wtf: command not found

  ```


Successfully aliased the URL <https://gatsby-now-g8sjzzink.now.sh> to the following aliases.

* https://gatsby-now.newgraph.now.sh
* https://gatsby-now-git-master.newgraph.now.sh


the state and everything above should not be initialized inside of constructor call, but rather on the component instance level since they don't need access to `props`


`AUTOMATED COMMENT FROM provision-ops/yaml-tests, running on localhost.localdomain`
### :x: Test Failed:
  ```sh
  $ pwd && wtf
  /home/jon/Projects/provision

  sh: wtf: command not found

  ```


Bah alors, on log tout ? :)


> Также вывести итоговую сумму за каждый товар.


Old code