 Write a program in Java to display the multiplication table of a given integer
 Test Data
Input the number (Table to be calculated) : Input number of terms : 5
Expected Output :

5 X 0 = 0
5 X 1 = 5
5 X 2 = 10
5 X 3 = 15
5 X 4 = 20
5 X 5 = 25
 Write a program in Java to display the pattern like a diamond
 Test Data
Input number of rows (half of the diamond) : 7
Expected Output :

     *
     *
    ***
   *****
  *******
 *********
***********
 *********
  *******
   *****
    ***
     *
     *
 Write a Java program to display Pascal's triangle.

Test Data
Input number of rows: 5
Expected Output :

Input number of rows: 5
      1
     1 1
    1 2 1
   1 3 3 1
  1 4 6 4 1
Take three numbers from the user and print the greatest number.

Test Data
Input the 1st number: 25
Input the 2nd number: 78
Input the 3rd number: 87
Expected Output :
The greatest: 87
Sukriti Sir Whats App: Write a Java program that keeps a number from the user and generates an integer between 1 and 7 and displays the name of the weekday.

Test Data
Input number: 3
Expected Output :
Wednesday
Sukriti Sir Whats App: Write a Java program that will accept an integer and convert it into a binary representation. Now count the number of bits which is equal to zero of the said binary representation.

Expected Output:
Input first number: 25
Binary representation of 25 is: 11001
Number of zero bits: 2
Sukriti Sir Whats App: Write a Java program to multiply two given integers without using the multiply operator(*).

Input the first number: 25
Input the second number: 5
Result: 125
 Write a Java program to get whole and fractional parts from a double value
  Write a Java program to reverse an integer number
  Write a Java program to accept two integers and return true if the either one is 15 or if their sum or difference is 15
  Write a Java program to print the sum (addition), multiply, subtract, divide and remainder of two numbers.

Test Data:
Input first number: 125
Input second number: 24
Expected Output :
125 + 24 = 149
125 - 24 = 101
125 x 24 = 3000
125 / 24 = 5
125 mod 24 = 5
Sukriti Sir Whats App: Write a Java program to print the area and perimeter of a circle.

Test Data:
Radius = 7.5
Expected Output
Perimeter is = 47.12388980384689
Area is = 176.71458676442586


[R/pir_run.R:115:6:](https://github.com/richelbilderbeek/pirouette/blob/1ab070a1295d405e8b96e44dd30a9b1f9b248973/R/pir_run.R#L115) *style:* **Commented code should be removed.**
```r
    #testit::assert(!all(is.na(pir_out$inference_model_weight)))
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-pir_run.R:955:1:](https://github.com/richelbilderbeek/pirouette/blob/1ab070a1295d405e8b96e44dd30a9b1f9b248973/tests/testthat/test-pir_run.R#L955) *style:* **Lines should not be more than 80 characters.**
```r
    example_folder <- file.path(root_folder, paste0("example_", example_no, "_", rng_seed))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-pir_run.R:973:1:](https://github.com/richelbilderbeek/pirouette/blob/1ab070a1295d405e8b96e44dd30a9b1f9b248973/tests/testthat/test-pir_run.R#L973) *style:* **Lines should not be more than 80 characters.**
```r
  phylogeny  <- ape::read.tree(text = "(((A:8, B:8):1, C:9):1, ((D:8, E:8):1, F:9):1);")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-pir_run.R:982:1:](https://github.com/richelbilderbeek/pirouette/blob/1ab070a1295d405e8b96e44dd30a9b1f9b248973/tests/testthat/test-pir_run.R#L982) *style:* **Lines should not be more than 80 characters.**
```r
    create_gen_experiment(beast2_options = create_beast2_options(rng_seed = rng_seed)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-pir_run.R:1029:1:](https://github.com/richelbilderbeek/pirouette/blob/1ab070a1295d405e8b96e44dd30a9b1f9b248973/tests/testthat/test-pir_run.R#L1029) *style:* **Lines should not be more than 80 characters.**
```r
    pir_params$evidence_filename <- file.path(example_folder, "evidence_true.csv")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


New Assignment (given by Sukriti sir)


# deleting empty spaces


# first coments


吼吼


Did this commit make functional changes or is it only refactoring?

Also it seems you removed `couldApply` and `notApply`, does that mean you are not pruning the JSON DOM while filtering anymore?


I'm not sure header values can ever be of other type but string


full disney!


as


I think even when the value is empty they should be empty string 🤔


You can skip reading (for saving time) these 2 methods as they were transferred and rewritten in the next commit.


Perhaps we can have a test for it - we could normalize any null or undefined value to empty string if it appears to be there for any reason


if encryptor is null, no need to extract column encr props


@chavoz The 'Sell All' button probably works by 'spamming' the normal sell button on the old client, since it now limits the amount of requests it's likely that it's not working because of that. You can try to:

go to
 Game::playerSellItem
find
`Condition::createCondition(CONDITIONID_DEFAULT, CONDITION_EXHAUST, 200, 0, false, EXHAUST_PLAYERSELLITEM))`

change to

`Condition::createCondition(CONDITIONID_DEFAULT, CONDITION_EXHAUST, 50, 0, false, EXHAUST_PLAYERSELLITEM))`

if that doesn't work just remove

```
if (Condition* conditionlook = Condition::createCondition(CONDITIONID_DEFAULT, CONDITION_EXHAUST, 200, 0, false, EXHAUST_PLAYERSELLITEM))
		player->addCondition(conditionlook);
```


The question is what intent is put into `null`/`undefined` as a header's value?


En fait, ce fichier .gitignore permet de garantir que le répertoire jepostule/static/vendor existe. Sans ce fichier, à mon avis on va avoir des soucis pour builder l'image docker. cc @vgrange


This is a valid case for games like Skyrim where the symlink deployment method is not supported and the game's mods folder is on a different partition from Vortex's staging folder.


There is no test for the `.trim()`. I don't think it "needs" to be tested, but reading tests is often good documentation and I think it could be nice to have a test showing the reader that `normalize`, except other things, also trims the values.


why file encryption properties are passed to an encryptor method?


@JuliaRegistrator register()


Registration pull request created: [JuliaRegistries/General/800](https://github.com/JuliaRegistries/General/pull/800)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.1.1 -m "<description of version>" 8f5f724375c36631ffec5b33749013ac930da64a
git push origin v1.1.1
```


no line break:
if (...) {


please re-use from above


Successfully aliased the URL <https://the-pragmatic-frontend-tester-q4to7gdup.now.sh> to the following aliases.

* https://frontend-testing.now.sh
* https://the-pragmatic-frontend-tester.afontcu.now.sh
* https://the-pragmatic-frontend-tester-git-master.afontcu.now.sh


If you set the "general" infobox that one will be used even though you set the "special" infobox.
The special infobox should override the "general" infobox but it seems lite that functionality didnt exist before the commit?


The hash of com.google.j2objc:j2objc-annotations:1.1 does not match what is currently being served on JCenter and MavenCentral.  This should be cause for concern.  Artifacts are not supposed to change.


s


a


Articulo sobre SE y LD


What's going on with these changes @AbnerZheng aren't they just inserting newlines ? They probably shouldn't be part of THIS commit.


This commit should be 2 lines added 1 removed, instead it has dozens of lines changed.


还是那么诡异的标点符号的使用，另外 markdown 不要使用缩进来表示段落，通过空行表示段落。


will the result be array with indexes or an object with number keys? 🤔


"# CHATBOT"
# 사물함 배정 챗봇 만들기(프로젝트명)
* Concept : 사물함을 배정해주는 챗봇
* 팀 구성 : 박성원, 허재석, 김민걸, 주해진
* Task : 카카오톡 기능 중 챗봇을 활용한 사물함을 배정해주는 챗봇 기획하기

# 일자별 회의/Output
| 일자 | 안건 | Slide | 회의록 | 기타 자료 |
| --- | --- | ----- | ---- | ------- |
| 05/16| 1차 아이디어 빌드 회의 | [Docs](https://docs.google.com/document/d/1utkpsa-vsfbfA3NzTo-CsaR2LsF_XbPx4PRG8cx6dx0/edit)| [Scenario
](https://docs.google.com/document/d/1lh036YEdXwMMT5SVqAZBq_43u01asm0ZE0QMNCf7FSk/edit)|


Successfully aliased the URL <https://wp-next-from-scratch-q4ch2euov.now.sh> to the following aliases.

* https://wp-next-from-scratch.tlock.now.sh
* https://wp-next-from-scratch-git-master.tlock.now.sh


# 사물함 배정 ChatBot 만들기
* Concept : 사물함을 배정해주는 ChatBot
* 팀 구성 : 박성원, 허재석, 김민걸, 주해진
* Task : 카카오톡 기능을 활용한 사물함을 배정해주는 ChatBot 기획하기
# 일자별 회의/Output
| 일자 | 안건 | Slide | 회의록 | 기타 자료 |
| --- | --- | ----- | ---- | ------- |
| 05/16| 1차 아이디어 빌드 회의|| |[Docs](https://docs.google.com/document/d/1utkpsa-vsfbfA3NzTo-CsaR2LsF_XbPx4PRG8cx6dx0/edit)|[Scenario](https://docs.google.com/document/d/1lh036YEdXwMMT5SVqAZBq_43u01asm0ZE0QMNCf7FSk/edit)|
| 05/16| 1차 아이디어 빌드 회의|| [Docs](https://docs.google.com/document/d/1utkpsa-vsfbfA3NzTo-CsaR2LsF_XbPx4PRG8cx6dx0/edit)|[Scenario](https://docs.google.com/document/d/1lh036YEdXwMMT5SVqAZBq_43u01asm0ZE0QMNCf7FSk/edit)|


Relates to #19


is this sufficient? should also stats field be set to nullptr?


commit


Successfully aliased the URL <https://apollo-movie-database-fm7offp1u.now.sh> to the following aliases.

* https://apollo-movie-database.wheelerkatia.now.sh
* https://apollo-movie-database-git-master.wheelerkatia.now.sh


is this merged ?


Successfully aliased the URL <https://lab9-fnwwrdsn7.now.sh> to the following aliases.

* https://lab9.gyd19980910.now.sh
* https://lab9-git-master.gyd19980910.now.sh


Ahhh I was supposed to wrap `outdir` in `std::string()`, so it should have been

```c++
auto sample_outdir { std::string(outdir).append("/").append(sample_name) };
```


[R/pir_run.R:115:6:](https://github.com/richelbilderbeek/pirouette/blob/05c613a28234a772b0e1c4aa60a7e2d06e911bb1/R/pir_run.R#L115) *style:* **Commented code should be removed.**
```r
    #testit::assert(!all(is.na(pir_out$inference_model_weight)))
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-pir_run.R:948:1:](https://github.com/richelbilderbeek/pirouette/blob/05c613a28234a772b0e1c4aa60a7e2d06e911bb1/tests/testthat/test-pir_run.R#L948) *style:* **Lines should not be more than 80 characters.**
```r
  example_folder <- file.path(root_folder, paste0("example_", example_no, "_", rng_seed))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Original program takes JPEG image as input and returns a .txt document with an ASCII representation of the image


c'est *exactement* à cela que le fichier `.gitkeep` sert :-)


Successfully aliased the URL <https://distance-learning-lp-wzupiulghn.now.sh> to the following alias.

* https://lp.onlineschool.ru


TIL!


This line (and others like it) is the real issue:
https://github.com/redctf/redctf/blob/master/client/src/pages/Register.js#L115


should be deleted


@leepa @eladb Perhaps we should use different runtime for this test (I.e. Python36) if we’re going to remove 4.3 and 6.10 at some point?


Successfully aliased the URL <https://distance-learning-lp-hvlzabnyyj.now.sh> to the following alias.

* https://lp.onlineschool.ru


@JuliaRegistrator register()


Registration pull request updated: [JuliaRegistries/General/800](https://github.com/JuliaRegistries/General/pull/800)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.1.1 -m "<description of version>" 8a774fe01bdbfc9d90a57354dffa2800b41617ce
git push origin v1.1.1
```


.gitignore
README.md


改了一下


caidachuangyeke.work


Registration pull request created: [JuliaRegistries/General/801](https://github.com/JuliaRegistries/General/pull/801)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.12.4 -m "<description of version>" f2353b27ffb2c9e4374efc733befd3939fb94524
git push origin v0.12.4
```


TeamCity Consultations / "Private Beta" - BuildAndPublish .NET Core 2.1 [Build 0.1.0.2092-ID-255-Improving-err](https://teamcity.nice.org.uk/viewLog.html?buildId=53781&buildTypeId=Consultations_PrivateBetaBuildAndPublish21) outcome was **SUCCESS**
Summary: Tests passed: 430 Build time: 00:07:39


Create README.md


[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:183:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/nLTTDiff.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:257:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/nLTTDiff.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:258:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/nLTTDiff.R#L258) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:324:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/nLTTDiff.R#L324) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:325:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/nLTTDiff.R#L325) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:326:1:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/nLTTDiff.R#L326) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[tests/testthat/test-abc_smc_nltt.R:32:3:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/tests/testthat/test-abc_smc_nltt.R#L32) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:46:3:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/tests/testthat/test-abc_smc_nltt.R#L46) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:52:3:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/tests/testthat/test-abc_smc_nltt.R#L52) *style:* **Variable or function name should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-mcmc_nltt.R:18:3:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/tests/testthat/test-mcmc_nltt.R#L18) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/tests/testthat/test-mcmc_nltt.R#L35) *style:* **Variable or function name should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:67:3:](https://github.com/richelbilderbeek/nLTT/blob/37d853042d00c173d5051a4dac44832bf002b390/tests/testthat/test-mcmc_nltt.R#L67) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


Dear @EdwinTh,
do you have any idea how we can extend RareBoost to multi-class classification?
Would it suffice to just add the term log(K-1) just as proposed by SAMME the extension of Adaboost?
Thank you


damnit ware


give us script


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-258-breema-d8.pantheonsite.io/)

Created multidev environment [ci-258](https://dashboard.pantheon.io/sites/d3832a3d-9a53-4b02-972e-db818509caf7#ci-258) for breema-d8.


Successfully aliased the URL <https://media-portrait8-jco912efh.now.sh> to the following aliases.

* https://media-portrait8.rodchenkoartschool.now.sh
* https://media-portrait8-git-master.rodchenkoartschool.now.sh


wow.


Successfully aliased the URL <https://now-example-m7m71z41j.now.sh> to the following aliases.

* https://now-example.paraformcreative.now.sh
* https://now-example-git-master.paraformcreative.now.sh


It's a different implementation. Check the latest commits please.


a


Это изображение декоративное, не нужно делать разметку подобных элементов


What you describe is the Integration-Test. But in a Unit-Test you want to test function by function independently.


much contribution


В макете каталога нет войти и регистрация, посмотри макет


Successfully aliased the URL <https://kap-artifacts-41cb8tlis.now.sh> to the following aliases.

* https://kap-artifacts.now.sh
* https://kap-artifacts.kap.now.sh
* https://kap-artifacts-git-master.kap.now.sh


What is Element in this context? If you're looking for a name for "either HTTP request or HTTP response", then it's "HTTP message"


Attempt to fix Sometimes Updating user config requires a second test run for it to take hold #68


We abandoned the idea to consider plugins from the PluginNamesToInstall list, since all plugins are installed when the application starts and not before restarting, and in this case it is not safe to install dependent plugins, as they may require the data of basic plugin


Incorporates pull request https://github.com/rism-ch/verovio/pull/1064/files#diff-0
which is also https://github.com/craigsapp/midifile/pull/66


Successfully aliased the URL <https://media-portrait8-fv44y5mjt.now.sh> to the following aliases.

* https://media-portrait8.rodchenkoartschool.now.sh
* https://media-portrait8-git-master.rodchenkoartschool.now.sh


Could you summarise how it's different? To me it seems most like refactoring.


Successfully aliased the URL <https://now-example-c12853lln.now.sh> to the following aliases.

* https://now-example.paraformcreative.now.sh
* https://now-example-git-master.paraformcreative.now.sh


Thanks, will use the message instead. Vocabulary improved.


@saswat3115 no, however the latest stable release 1.8.6 includes these additions to the lineChart so linePlusBarChart _should_? be able to make use of that.


Also I see you removed some of my optimisations which does make for more clear code I have to admit.


Why? Empty commit messages are EVIL. Please don't do it that way. The commit log message must not repeat what can be seen in a `diff`, instead it must explain WHY those changes were made.


Not sure how the proceed from this point, but here as equivalent and simple to generate `.ics` file that (if shared from the website) can be subscribed to from calendar clients, and the dates will update automatically:
```curl.ics
BEGIN:VCALENDAR
PRODID:-//curl//curl Calendar//EN
VERSION:2.0
CALSCALE:GREGORIAN
METHOD:PUBLISH
X-WR-TIMEZONE:UTC

BEGIN:VEVENT
DTSTART;VALUE=DATE:20200617
DTEND;VALUE=DATE:20200617
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20200422
DTEND;VALUE=DATE:20200422
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20200227
DTEND;VALUE=DATE:20200227
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20200108
DTEND;VALUE=DATE:20200108
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release (moved)
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20191106
DTEND;VALUE=DATE:20191106
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20190911
DTEND;VALUE=DATE:20190911
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20190717
DTEND;VALUE=DATE:20190717
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

BEGIN:VEVENT
DTSTART;VALUE=DATE:20190522
DTEND;VALUE=DATE:20190522
CLASS:PUBLIC
SEQUENCE:0
SUMMARY:curl release
TRANSP:TRANSPARENT
END:VEVENT

END:VCALENDAR
```


Immediately she was welcomed by a tall kid, who claimed to be Ranchero Kiama. He claimed to be the master blader of the school. But then, so did Fubuki, And Aigar. "I-i like your bey." she said to Aigar.


[tests/testthat/test-pir_run.R:948:1:](https://github.com/richelbilderbeek/pirouette/blob/05c613a28234a772b0e1c4aa60a7e2d06e911bb1/tests/testthat/test-pir_run.R#L948) *style:* **Lines should not be more than 80 characters.**
```r
  example_folder <- file.path(root_folder, paste0("example_", example_no, "_", rng_seed))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Would this reflect the intention of both arguments being the same type (req/res)?


Create README.md


Nova versão


README.md


It's… complicated. But I'll try to explain.

**With authentication_active: false**
With this setting user can not set map-specific infoboxes, so all configuration goes to `layers.json`.
* `infobox` in sublayer ("special") overrides `infobox` in layer ("general")
* In a layer (L) with 3 sublayers (A, B, C), if you define infobox on L and another one on B, then B will show its special infobox, while A and C will show the one defined on L.
* So this behaves as expected, special overrides general.

**With authentication_active: true**
This is where it gets complicated (and where it's not entirely logical, in my opinion).

* We extend our example with two map configs: M1 and M2.
* M1 has now additional settings for infobox
* In M2, we specify another infobox for our layer L (this is the only one we can specify on this level – there is no way to specify A, B, or C from admin's UI for map config)
* Everything works as in the first example for M1.
* For M2 however, A, B, and C now show the "super-special" infobox, specified in M2's infobox config for L.

**Conclusion**
As I see it, the only way to make this consistent right now is to add a possibility to set "super-special" infoboxes in admin's UI for map config. So on render we can follow the plain logic _for each sublayer_:
```
let infoboxFormat = superSpecialInfobox || specialInfobox || infobox;
```


### 1 - Projeto que vamos desenvolver

### 2 - Arquitetura da evolução web

1. Tudo começou com as Servlets
2. Depois criaram o JSP - misturar código java com html
3.  Usando o Servlet e o JSP criaram o padrão MVC - consigue criar as páginas ,regra de 		negócio e camada persistência
4. Dentro do MVC temos o Spring Framework - 		pode ser usando qualquer módulo dele em 		seu Projeto - orientado a ações(recebe 			processo 	e direciona)

5. JSF - Também é um framework MVC porem ele focado em compoentes - Junto dele tem o Primefaces entre outros que são MVC - baseado em componente( você cria um componente e ele se liga na camada de Back End no Servidor )

6. Arquitetura RESTful ou Web Services - os Web Services evoluiram para RESTful

7. Dentro do RESTFul podemos usar o Angular pra camada de visualização e por traz o spring framework ou somente servlets

### 3 - O que são especificações

> Java EE - É uma plataforma padrão para desenvolver aplicações Java de grande porte e/ou para a internet

- Define as especificações para ser seguido

> 1 - Especificações - São em cima delas a criação de frameworks

- Java Servlets
  São encapsuladas pelos frameworks

- Java Server Pages - Tecnologia
  Baseado em servlets - parecida com PHP

- JSF
  Mais avançado que o JSP - baseado em Java
  Simplifica a criação da interface(telas)
  baseados em componentes

  PrimeFaces baseado no JSF

- Java Persistence API(JPA)
Padrão pra persistência de dados
Orientação: ORM - mapeamento objeto relacional
Hibernate e feito em cima do JPA

- Enterprise Java Beans
Componentes que executam em servidores mais robustos
Fornece facilidade e produtividade pro desenvolvimento distribuído
Você pode desenvolver qualquer tipo de aplicação usando somente as especificações

**Obs: Frameworks que ditam regras**

### 4 - Protocolo HTTP - GET e o RESPONSE

- Tuda a web se basea nessa protocolo
- Tudo que é mandado pela URL é uma requisição gerando uma resposta

- Métodos mais básidos da WEB
Get - buscando(pegar) no servidor
Post - Gravar

### 5 - Protocolo HTTP - POST e o PUT

- Post
postar - quando o usuário se cadastra
- Put
pode ser usado pra cadastrar ou atualizar

### 6 - Protocolo HTTP - DELETE

- Delete
Excluir alguma coisa

### 7 - O que é o JSF - JavaServer Faces

> 1 - JSF - Framework MVC(padrão de projeto)

Você como cliente acessando o sistema, a partir do momento que você clica em alguma tela em JSF, salvando consultando.. fazendo alguma ação automaticamente essa ação fica ligada a um Managed Beans(Controles) -Toda a tela JSF tem o seu managed beans e por traz managed beans é controlado pela classe Faces Servlet(Classe principal do JSF)
Os dados passando do controle para o Model que é uma classe java que representa esses dados ex: Pessoas, serviço...

- Controller
Controla todo a aplicação

- Páginas em JSF são em XHTML

### 8 - Principais componentes JSF

> 1 - Componentes mais usandos em JSF

Google: Tutorial point
[](https://www.tutorialpoint.com/jsf/
)
- Mais usando:
- Formulários
- Auto Complete
- InputTextarea
- booleanCheckbox
- CommandButton
- DataTable

Estruturando:

Vamos ter a página XHTML - a tela que aparece pro usuário
e por traz o nosso managed beans - controla a tela JSF

### 9 - Quem criou o JSF

- Maiores empresas e tecnologias no mundo

### 10 - Bibliotecas que completam o JSF

Site oficial: https://javaee.github.io/javaserverfaces-spec/

Onde consta o código fonte fo JSF.

> 1 - Bibliotecas de terceiros

Outra coisa interessante são as bibliotecas de terceiros
Você usa  no projeto JSF pra facilitar o desenvolvimento. Ex:

http://icefaces-showcase.icesoft.org/showcase.jsf - A documentação não é muito boa
http://showcase.richfaces.org/                               - Um pouco complidado
https://www.primefaces.org/showcase/                - Mais fácil de usar, mais usado

**Obs: Managed Bean ~ BackEnd**


Pourquoi on enlève pas Travis tout simplement ? C'est encore mieux comme
contrib !

Le jeu. 16 mai 2019 à 15:04, Lucas Soulier <notifications@github.com> a
écrit :

> much contribution
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/ungdev/flux2-server/commit/ae094245eae8a96a0d6cfb8e367a287e5351aa53?email_source=notifications&email_token=ACM6OCD5SNVCSWZAEXS2L6LPVVLXBA5CNFSM4HNMKIA2YY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBAAII3#commitcomment-33562907>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ACM6OCCBL5PP77MB5RGLFATPVVLXBANCNFSM4HNMKIAQ>
> .
>


Убери пока заголовки из форм тут, сделай просто параграф, Вадим Макет расскажет в своей лекции как сделать правильно


Куча пробелов


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Не вижу кнопок при наведении которые


The maximum total frame size is 248 bytes.


[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:183:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/nLTTDiff.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:257:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/nLTTDiff.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:258:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/nLTTDiff.R#L258) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:324:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/nLTTDiff.R#L324) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:325:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/nLTTDiff.R#L325) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:326:1:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/nLTTDiff.R#L326) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable or function name should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable or function name should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/richelbilderbeek/nLTT/blob/e07d91732a942f824ce8da1ceedb3140503b82fe/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


thsi is commit by devope2


@InCeyN


难难难


@kbickar  - I really appreciate you looking into it, I really depended on this integration and I am afraid my python is too weak to debug myself...

I am also curious though, is this component is working for you right now  ?


[inst/doc/trees_with_root_edge.R:31:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/trees_with_root_edge.R#L31) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/walkthrough.R:11:16:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
    plot(tree1)
               ^
```
[inst/doc/walkthrough.R:30:50:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L30) *style:* **Trailing whitespace is superfluous.**
```r
nltts_plot(trees1, dt = 0.001, plot_nltts = TRUE,
                                                 ^
```
[inst/doc/walkthrough.R:32:50:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
nltts_plot(trees2, dt = 0.001, plot_nltts = TRUE,
                                                 ^
```
[inst/doc/walkthrough.R:42:75:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L42) *style:* **Trailing whitespace is superfluous.**
```r
plot(m1, type = "s", col = "red", lwd = 2, xlim = c(0, 1), ylim = c(0, 1),
                                                                          ^
```
[inst/doc/walkthrough.R:45:65:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L45) *style:* **Trailing whitespace is superfluous.**
```r
legend("topleft", c("trees1", "trees2"), col = c("red", "blue"),
                                                                ^
```
[inst/doc/walkthrough.R:74:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L74) *style:* **Variable or function name should be snake_case.**
```r
A <- abc_smc_nltt(
^
```
[inst/doc/walkthrough.R:85:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L85) *style:* **Variable or function name should be snake_case.**
```r
LL_B <- function(params, phy) {
^~~~
```
[inst/doc/walkthrough.R:97:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L97) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = fun, interval = c(0, 1))
  ^~
```
[inst/doc/walkthrough.R:104:28:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L104) *style:* **Trailing whitespace is superfluous.**
```r
         lty = c(NA, 2, 2),
                           ^
```
[inst/doc/walkthrough.R:108:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L108) *style:* **Variable or function name should be snake_case.**
```r
B <- mcmc_nltt(obs, LL_B, parameters = c(0.5),
^
```
[inst/doc/walkthrough.R:108:47:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L108) *style:* **Trailing whitespace is superfluous.**
```r
B <- mcmc_nltt(obs, LL_B, parameters = c(0.5),
                                              ^
```
[inst/doc/walkthrough.R:114:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L114) *style:* **Variable or function name should be snake_case.**
```r
B.mcmc <- coda::as.mcmc(B)
^~~~~~
```
[inst/doc/walkthrough.R:119:55:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L119) *style:* **Trailing whitespace is superfluous.**
```r
  hist(A, breaks = seq(0, 1, by = 0.05), col = "grey",
                                                      ^
```
[inst/doc/walkthrough.R:124:24:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L124) *style:* **Trailing whitespace is superfluous.**
```r
         lty = c(2, 2),
                       ^
```
[inst/doc/walkthrough.R:126:55:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L126) *style:* **Trailing whitespace is superfluous.**
```r
  hist(B, breaks = seq(0, 1, by = 0.05), col = "grey",
                                                      ^
```
[inst/doc/walkthrough.R:130:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/inst/doc/walkthrough.R#L130) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:183:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/nLTTDiff.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:257:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/nLTTDiff.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:258:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/nLTTDiff.R#L258) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:324:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/nLTTDiff.R#L324) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:325:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/nLTTDiff.R#L325) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:326:1:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/nLTTDiff.R#L326) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[tests/testthat/test-abc_smc_nltt.R:32:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/tests/testthat/test-abc_smc_nltt.R#L32) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:46:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/tests/testthat/test-abc_smc_nltt.R#L46) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:52:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/tests/testthat/test-abc_smc_nltt.R#L52) *style:* **Variable or function name should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-mcmc_nltt.R:18:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/tests/testthat/test-mcmc_nltt.R#L18) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/tests/testthat/test-mcmc_nltt.R#L35) *style:* **Variable or function name should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:67:3:](https://github.com/richelbilderbeek/nLTT/blob/889fcd90dde6b8e75408ef280204978f54f33899/tests/testthat/test-mcmc_nltt.R#L67) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


The trimming of headers values will be removed and discussed later on as a part of further steps. Thanks :)


@y0sher shouldn't this be above the last `if` clause ([here](https://github.com/spacemeshos/go-spacemesh/commit/0bbbd71aac7766664d8ade5944d024c5907b31bd#diff-c11a45451fdb7a6f25210441ccca41afL107))?

While I made the case against this behavior, I thought we decided to pass along messages, **even if we've seen them before**, to neighbours that we never passed them to. Have we changed this decision or is this a bug?


this just reminded me my PHP times 😅 (like, around 2010) https://www.php.net/manual/en/function.isset.php


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m_is_activeはスキルがアクティブか判断するフラグですか？
そうだとしたら、slillを名前に入れた方がいいと思います。


Ok!


actually, why this isn't directly inside `validate()`? 🤔


Damn it, years of PHP development can't let me go 😄
I still find this util helpful to check for existence without having false negatives.


oh, I see, it's because validate has the callback and stuff...


点名夸奖233
只有真正的粉丝知道去哪里🔥3Shain🔥


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feel free to change your contribution(s) or add something I missed :)


`validate` is a legacy public API and its call signature is overcomplicated. To validate the given HTTTP messages pair we don't need `type` or `callback`. In the future I'd like to deprecate the current `validate` and perform validation using this function. _Then_ we can rename it to `validate` :)


I already share an ICS on google calendar:

https://calendar.google.com/calendar/ical/c9u5d64odop9js55oltfarjk6g%40group.calendar.google.com/public/basic.ics

It also shows feature freeze dates.


What is the "Function" type and does it relate to the Group, Layer, Path, etc? The original thought was to pass through the string name of the class since that's what the underlying library used. Has that changed?


あと、これは自分が心がけてる事なんですが
否定(!)を使うと可読性が落ちやすいと
思っているので、== falseの方がいいと思います


Shouldn't the file be called artifact-overrides.yaml (with an i instead of an e)? Inside the file it's also 'artifacts:'.


如此的厉害


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pはpointの略であってます？


I believe this should be pynwb.image. ImageSeries: image.show_index_series,


add something at the beginning or end of all the files in a directory


Wouldn't it be possible to merge the code of `doOnCancel` and `then` into a `doFinally`? Because according to javadocs `doFinally` is fired on both completion and cancellation signals. That way you could avoid a such code duplication 😛


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The first player to reach 100 points is the winner!.


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indexed_timeseries = index_series


###11 - Criando primeiro projeto JSF

> 1 - Vamos criar um projeto Maven

_File -> New -> Other -> Maven Project -> Next -> Next {
    Maven Project
	Group Id: 'meuprimeiroprojeto'  ~ Forma de controlar o pacote
	Artifact Id: 'meuprimeiroprojeto'
	Version: ...
	Package: 'br.com.cursojdf' ~ Pasta de código finte do projeto
} -> Finish_

Package - nomenclatura (br - brasil, .com. nome da empresa que você trabalha, pode ser o seu nome)

> 2 - Maven Estrutura:

	_src/main/java - Onde será colocado o código fonte
	src/teste/java -  Pra fazer teste no sistema
	src                  - View
	      main         - páginas Web_

 **Obs: Se você for tentar adicionar no Tomcat ele não vai aparecer - ele é um projeto maven porém ele não é um projeto Web. Precisamos configura-lo.**

> 2 - Configurando um projeto Web

_Botão direito no projeto -> Properties -> Project Facets -> botão esquerdo no que aparecer. Precisamos abilitar um módulo web(clica na caixinha Dynamic Web Module) Outros a clicar:
Arrumar versão do Java
Java Script
Java Server Faces 2.2
JPA

Click em: Further configuration required
Type: 'Disable Library Configuration'

-> Next

Gerar o web.xml:  Arquivo de configuração

-> Next -> OK -> Apply_

Uma nova estrutura do projeto é criada:

WEB-INF
        lib
        faces-config.xml   - Arquivo de configuração do JSF
        web.xml                - Arquivo de configuração de todo projeto WEB - o JSF já está configurado( <servlet-name>Faces Servlet</servlet-name>
   									 <servlet-class>javax.faces.webapp.FacesServlet</servlet-class>)

> 3 - Projeto Maven:

As blibliotecas e serviços serão definidos todos no arquivo Pom.xml

> 4 - Adiconando o JSF:

google: maven jsf 2.2 -> Maven(copia o código)
precisamos do jsf-impl e jsf-api
Atualizando...
_Botão direito no projeto -> Maven -> Update Project...(marca todas as caixinhas)_


Make this a subclass of "webcam" and get the hardcoded values out of the record(self, time) function ASAP!!


why? the airbnb style guide says the basename should match the default export and at other places we usually do it like it was: `module.exports = normalizeHeaders;`


It should be an array, as `evolve` uses `.concat` for arrays as input.


oh I see the commit message - sorry didn't realize... hmmm... so would it make sense to make it the other way around? or perhaps we could do it later when the rest of gavel is rewritten?


Please stop this test. You are not tuning anything in this manner.
For proper tuning see this link: https://github.com/glinscott/fishtest/wiki/Creating-my-first-test
and check for SPSA tests.


old_download & ~cart_download is the condition that it is set in, which should be set when cart download goes low, ie when the download finishes. A few cores were implicitly relying on the behavior of ioctl_address being left as it was after the download finishes and used it for things like masking the rom area. Since cheats use the download mechanics too, this address had to be latched instead. That's what cart_sz is and that's why it is that length. As far I can tell just making it 1:1 with the old vector works fine. If you feel the need to make it more efficient that's fine, as long as it doesn't impact the behavior. I had no plans to make any changes to this code soon unless there was a bug.


Why not? Any reason not to host the Website for IPFS Camp on IPFS?


QAQ


I'm okay with both. I was thinking to align the same way of export, since it was confusing to me:

```js
const { validateBody } = require('...')
const validateHeaders = require('...')
```

Conceptually, different export type for semantically same functions makes me tick. Since some modules export more things to have proper test coverage, I suggested to keep named exports everywhere.

In the end, it's only about common agreement, so feel free to object.


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yeah, _should_ 😉 maybe we could add an `it()` to ensure the type is correct in the test


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Pull request testing


size of what??