[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:183:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:257:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:258:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L258) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:324:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L324) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:325:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L325) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:326:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L326) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable or function name should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable or function name should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


Successfully aliased the URL <https://liganicer-450xcwzph.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


This is about "Update or Delete Request" but the scenario only details "delete"


Ah okay i see...I think it is better to write another script for softwares and dependencies downloading...I will


sorry, didn't saw that CLion is adding this.


Why templates are implemented in the header file: https://stackoverflow.com/a/16493574/4370146


Successfully aliased the URL <https://liganicer-nbnfnwzg6.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


No...I don't think so


Successfully aliased the URL <https://effector-rhaszqtfu.now.sh> to the following aliases.

* https://effector.now.sh
* https://effector.zerobias.now.sh
* https://effector-git-master.zerobias.now.sh


Butonları düzenledim.Başlıkları düzenledim.Panelleri düzenledim.


Successfully aliased the URL <https://musiikin-teoria-material-ygfjwhyhse.now.sh> to the following alias.

* https://musiikin-teoria.now.sh


Now could not deploy this pull request since the `now.json` file is empty.
It should be a valid JSON file.

    For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.


It should reload the page. history.push() is updating url but not navigating to it in browser.


@alanakbik The problem with Czech here is, that there are a few more training datasets. I haven't found an elegant way to support more training datasets -> maybe a list of training files would be great to have, but that would require to change the parsing logic here:

https://github.com/zalandoresearch/flair/blob/GH-457-data-loader/flair/data_fetcher.py#L347

🤔


Changed behaviour
![was](https://user-images.githubusercontent.com/1842889/57922900-1fcb5d80-78a1-11e9-98dd-ba8072dfee35.png)

to this:
![changed](https://user-images.githubusercontent.com/1842889/57922961-51442900-78a1-11e9-9032-dc73da13a268.png)


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/d16-2/16/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/d16-2/16/display/redirect) (on internal Jenkins) failed in stage(s) 'Test run, Test run' 🔥

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/d16-2/16//console)
✅ Packages: [xamarin.ios-12.14.0.56.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/16/package/xamarin.ios-12.14.0.56.pkg) [xamarin.mac-5.14.0.56.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/16/package/xamarin.mac-5.14.0.56.pkg)
✅ [API Diff (from stable)](http://xamarin-storage/jenkins/xamarin-macios/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/16/jenkins-results/api-diff/index.html)
✅ [API Diff (from PR only)](http://xamarin-storage/jenkins/xamarin-macios/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/16/jenkins-results/apicomparison/api-diff.html) (no change)
✅ [Generator Diff](http://xamarin-storage/jenkins/xamarin-macios/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/16/jenkins-results/generator-diff/index.html) (no change)
🔥 [Test run failed](http://xamarin-storage/jenkins/xamarin-macios/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/16/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary>3 tests failed, 1243 tests skipped, 239 tests passed.</summary>

## Failed tests

 * [NUnit] Mono SystemXmlTests/watchOS - simulator/Debug: Crashed
 * [NUnit] Mono SystemSecurityTests/watchOS - simulator/Debug: Crashed
 * [xUnit] Mono SystemXmlXunit/watchOS - simulator/Debug: Crashed
</details>


![](https://github.trello.services/images/mini-trello-icon.png) [Поиск](https://trello.com/c/VeMP1NiN/13-%D0%BF%D0%BE%D0%B8%D1%81%D0%BA)


Successfully aliased the URL <https://notate-ibsl7c5f8.now.sh> to the following aliases.

* https://notate.now.sh
* https://notate.rororo-developer.now.sh
* https://notate-git-master.rororo-developer.now.sh


1. Usually java project contains 2 folders: "src/main" and "src/test". Better keep all the tests in src/test.
2. Using main method is not good idea. Try JUnit


Yes, thanks for your fix


leave


Successfully aliased the URL <https://liganicer-pm4d7tetw.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


送 delete request 需要包含 rev 欄位吧??
iottalk-core/iot/raproto/http/app.py line158 會檢查


@gaboraranyossy-da : just noticed that `java -jar sandbox-binary_deploy.jar --help` doesn’t terminate after this change, because of a deadlock between lazily initializing `sandboxServer` versus trying to close it in the shutdown hook.


good catch. separate commit. remove "integer" from the exc message. Consider extracing `intBitsToFloat((int) value)` as a variable


I merely move it and seems it can be removed.


Successfully aliased the URL <https://liganicer-lffiyaas0.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


![](https://github.trello.services/images/mini-trello-icon.png) [Mobile - ETQU je veux pouvoir faire un cours microlearning](https://trello.com/c/3hAJP6Ar/1183-mobile-etqu-je-veux-pouvoir-faire-un-cours-microlearning)


Links to other pages will need to "api_interaction_supersede.html" rather than "/api_interaction_supersede.html" - note removal of the leading slash.


Created issue #210 so we don't forget this.


Successfully aliased the URL <https://liganicer-2kjxlgia9.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


I guess the options are to make it a strict value again, in which case I expect a `NullPointerException` to be thrown in the shutdown hook thread, or we gate the call to `sandboxServer.close()` with a flag that is only set to true if the config parsing succeeds.


rm


revert


[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:183:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:257:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:258:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L258) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:324:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L324) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:325:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L325) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:326:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L326) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable or function name should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable or function name should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


We certainly have had people ask before how to get track address info, and we haven't had a good answer for them.  I would strongly support adding a similar "if (it->trackFinderType()" conditional for omtf and emtf.  Is there any reason not to?


https://docs.oracle.com/javase/7/docs/api/java/sql/PreparedStatement.html
on the method above - addNewDepartment, you are using PreparedStatement  parameters


Change examples to match new style:

<div class="github-sample-wrapper scroll-height-350">
{% highlight json %}
{% include ...file.ext  %}
{% endhighlight %}
</div>


{% highlight json %}
{% include ...file.ext  %}
{% endhighlight %}


Will this return a location header? I don't think it will.


ResultSet.close()?


Manually updated for better readability.


Successfully aliased the URL <https://console-error-limited-4hlb8xtrv.now.sh> to the following aliases.

* https://console.error.limited
* https://console-error-limited.sndrs.now.sh
* https://console-error-limited-git-master.sndrs.now.sh


"upcated" spelling error


This will over-reserve for sure (better than under-reserve).
I think this is approximately the upper-bound, or should it be tighter: `(in.size() / (sep.size() + 1))`?
Or we should just omit it?


pip has different versions of python3-xlib(0.15), xlib(0.21), python-xlib(0.25) so i think better to install the newest version is "python-xlib". also i think better to install evdev from pip because is there version 1.2.0 instead version 1.1.2 from ubuntu and debian repos (stable version of debian does not have this package at all, stable version of ubuntu has 0.7.0 version which is very old).
so i think better to "apt install python3-pip" and "pip3 install python-xlib evdev numpy" what works well for stable version of debian with python3.5. also no need to use sudo in script


it's not convenient to pass a connection to all the methods


This mentions "creation of a pointer" instead of patch or update. There are other mentions of "create" in this block too.


Don't think this one is relevant.


@dinyar has already implemented a new and cleaner way to get the TA content.
That old code has been left there for backwards compatibility, and if the new way will be integrated successfully by the DPG we will probably go for a "code clean up" here.
However, OMTF and EMTF might need backwards compatibility as well.


Successfully aliased the URL <https://liganicer-qsc4fq3el.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


This type of name `isAdjective` is usually reserved for a function that returns a boolean.
For modifier, perhaps `whenPaused` is better suited.


"==== Link Releases to the project

A `POST` request is used to link releases to the project"

why i can't do it?
status":400,"error":"Bad Request","message":"JSON parse error: Can not deserialize instance of java.util.ArrayList out of START_OBJECT token


pierwszy chiba **dopisany**...


It probably does not need to check `isOwner` a second time if it is done in `setRunning` too.


Successfully aliased the URL <https://volicsky-prukaz-ijaembozb.now.sh> to the following aliases.

* https://volby2.hlidacstatu.cz
* https://volicsky-prukaz.hlidacstatu.now.sh
* https://volicsky-prukaz-git-euro2019.hlidacstatu.now.sh


Thanks @cshum for this better behaviour when requeuing a message in a processor.
I'm proposing here to make a slighty change to this behaviour by setting the VisibilityTimeout based on the `getDelaySeconds` of the SQS message.
I see a real interest in this, as this would allow us to requeue a message and add a delay before it can be consumed again by setting a delay on the message in the processor just before returning `Processor::REQUEUE`.

Concretly the code would be here:
`'VisibilityTimeout' => $message->getDelaySeconds(),`

Before doing a PR, I prefer to ask if you too would see an interest on this update. What do you think @makasim @cshum


Dont keep ".idea" folder or other not related files to the project in repository


Would it be possible have this version published on `crates.io` as well?


The call to `port` here accesses `actualPort`, which is only initialized AFTER this method has run (see initialization of `actualPort` in line 66). And because `actualPort` is of type `Int`, this means the uninitialized value is `0` => sandbox always starts on a random port.


should also check for listeners:

 `&& !node._listeners[event.type]`

add with addEventListener()


I think these should include the additional properties. An example of these are included in:
https://github.com/nhsconnect/FHIR-NRLS-API/blob/phase-2/_includes/examples/create_documentreference_resource.json
https://github.com/nhsconnect/FHIR-NRLS-API/blob/phase-2/_includes/examples/create_documentreference_resource.xml


hahahaha, o my god...


Hi @panoskatsoulis , @dinyar ,
Is this "new and cleaner way to get the TA content" in the code changes above?  If so, where?  I see a function to *encode* (i.e. write) the TA content into a single long word, but that's much harder to work with than a vector of values representing the TA sub-components, IMO.  But maybe I'm missing something here ...


You can add `indexed` where you think it makes sense.


Why is the `Closure`'s receiver type `KotlinJsCompilation`? Shouldn't it be `KotlinTarget`?


Updated some additional strings


Successfully aliased the URL <https://liganicer-a1v9njoib.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


I think the root cause was that this commit

https://github.com/x3dom/x3dom/commit/34d7185f1b1e40c9510f355923b837881910fddb#r33577237

See comment for how to address this there.

When is setupTree used ?


what about correct exception handling. currently it looks like: write something to log and die silently


Successfully aliased the URL <https://liganicer-kg6x2rf46.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


Yes


return matcher.matches(); // ?


Yes, create a GIST index on geometry columns to speed up geo queries: http://revenant.ca/www/postgis/workshop/indexing.html

I would probably use the geometry type, with the 4326 coordinate reference system consistently across all tables, for example:

```
SELECT AddGeometryColumn ('my_schema','my_spatial_table','geom',4326,'POINT',2);
```


@sergiofenoll What exactly is the issue with temp registers atm?


Successfully aliased the URL <https://liganicer-9avgolj8u.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


@groman00 cool, thanks


@gerolf-da: thanks for reporting this, I look into this.


![](https://github.trello.services/images/mini-trello-icon.png) [Implementar docker](https://trello.com/c/MWtR6nJo/33-implementar-docker)


![](https://github.trello.services/images/mini-trello-icon.png) [Editar perfil / ajustes](https://trello.com/c/W1Ac3ket/15-editar-perfil-ajustes)


![](https://github.trello.services/images/mini-trello-icon.png) [Sidebar](https://trello.com/c/VgXKRNc5/25-sidebar)


![](https://github.trello.services/images/mini-trello-icon.png) [Modelos y relaciones entre ellos (eloquent / laravel)](https://trello.com/c/hcg8fbhS/2-modelos-y-relaciones-entre-ellos-eloquent-laravel)


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[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:183:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:257:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:258:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L258) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:324:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L324) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:325:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L325) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:326:1:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/nLTTDiff.R#L326) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable or function name should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable or function name should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable or function name should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/richelbilderbeek/nLTT/blob/546dfb3fe897b7cc174dc77bbf5b1845b8ca9490/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable or function name should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


![](https://github.trello.services/images/mini-trello-icon.png) [Personalizar Auth](https://trello.com/c/R63ZmKfv/1-personalizar-auth)


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Tab buttton activates the widget navigation. Is there another way?


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/unable-to-export-theme-created-via-admin-panel/116907/6


This should do it


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Thanks @amercader!


DeepCode analyzed this commit.
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agree


That way you are making a coupling to SQS transport implementation. The processor won't work with other transports. It is not an issue per se but at least should be considered.

I would prefer to ack the original message and publish a new one with a delay set.


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* https://liganicer.liganicer.now.sh
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Yes in my code, I would check if the message is `SQSMessage` before setting the delay.
If I push a new message I lose the DLQ functionality and will need to implement this on my side.


to_time_t() documentation:
> If std::time_t has lower precision, it is implementation-defined whether the value is rounded or truncated.

Since parse_time_t() gets seconds from parseTimeLine(), rounding is not possible here: it must have been already handled by parseTimeLine() itself.
Truncation may happen if sizeof(time_t) < sizeof(std::chrono::seconds::rep). I think it is probably an uncommon situation because both sizes are usually 8 bytes. The old code truncated it too when converting from time_msec_t to time_t. So we can either leave this as is (adding a comment if needed) or handle such truncation as a fatal error. What do you think?


sa


Just turn STRICT_ANTISPAM=True then enjoy lol


속에 room 변수가 있는데 room 변수를 조작하면 room.jpg의 워드클라우드 이미지가 생성됨


Make sense. We can add RequeueVisibilityTimeout property to sqs message defaults to zero and use that in requeue logic. WDYT?


@BertrandBordage This should be returning a JSON string rather than a list object, I think...? Would be good to revert the changes to wagtail/core/tests/test_tests.py so that this helper is tested again.


commit


Size of separator has nothing to do with count of items in resulting vector.


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* https://cantyoujust-git-master.jameswlane.now.sh


Yes, this way we would be sure to not impact existing code ;)


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* https://status-board.com
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* https://github-guestbook-git-master.msweeneydev.now.sh


OK thank you for theses informations. I have changed ck value (more than x2) for last tuning and it is better than for first run. For rk, what do you suggest ?


VT/NVT changes


hi these is first app


I'm going to propose a PR. Thanks for your quick response.
I'm currently lacking a lot this feature.

There was already a closed PR https://github.com/php-enqueue/enqueue-dev/pull/768 but I think this feature would really help some people ;)


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Remove not used code


[R/default_params_doc.R:3:62:](https://github.com/richelbilderbeek/netmhc2pan/blob/c26ed52da8c8629bab8d62e26b78a04e829417a0/R/default_params_doc.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' @param alleles one or more alleles, e.g. \code{DRB1_0101}.
                                                             ^
```
[R/get_default_netmhc2pan_bin_path.R:4:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/c26ed52da8c8629bab8d62e26b78a04e829417a0/R/get_default_netmhc2pan_bin_path.R#L4) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_bin_path <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:5:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/c26ed52da8c8629bab8d62e26b78a04e829417a0/R/get_default_netmhc2pan_subfolder.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_subfolder <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:6:13:](https://github.com/richelbilderbeek/netmhc2pan/blob/c26ed52da8c8629bab8d62e26b78a04e829417a0/R/get_default_netmhc2pan_subfolder.R#L6) *warning:* **no visible global function definition for ‘get_default_netmhc2pan_folder’**
```r
  file.path(get_default_netmhc2pan_folder(), "netMHCIIpan-3.2")
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


created repository


`@class` actually links to coercion classes, it should just be a term I guess.


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* https://liganicer.liganicer.now.sh
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[R/default_params_doc.R:3:62:](https://github.com/richelbilderbeek/netmhc2pan/blob/932ccbf9f5b3b6bd649c8f991c360b2ed0448f75/R/default_params_doc.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' @param alleles one or more alleles, e.g. \code{DRB1_0101}.
                                                             ^
```
[R/get_default_netmhc2pan_bin_path.R:4:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/932ccbf9f5b3b6bd649c8f991c360b2ed0448f75/R/get_default_netmhc2pan_bin_path.R#L4) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_bin_path <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:5:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/932ccbf9f5b3b6bd649c8f991c360b2ed0448f75/R/get_default_netmhc2pan_subfolder.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_subfolder <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:6:13:](https://github.com/richelbilderbeek/netmhc2pan/blob/932ccbf9f5b3b6bd649c8f991c360b2ed0448f75/R/get_default_netmhc2pan_subfolder.R#L6) *warning:* **no visible global function definition for ‘get_default_netmhc2pan_folder’**
```r
  file.path(get_default_netmhc2pan_folder(), "netMHCIIpan-3.2")
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


## Stats from current release

Click to expand stats

| | zeit/next.js master | zeit/next.js refs/tags/v8.1.1-canary.32 | Change |
| - | - | - | - |
| Build Duration | 12.9s | 15.3s | ⚠  +2.4s |
| `node_modules` Size | 43.7 MB | 40 MB | -3.67 MB |
| Total Bundle (main, webpack, commons) Size | 210 kB | 209 kB | -896 B |
| Total Bundle (main, webpack, commons) gzip Size | 68.5 kB | 68.3 kB | -180 B |
| Client `_app` Size | 2.49 kB | 2.54 kB | ⚠  +50 B |
| Client `_app` gzip Size | 1.04 kB | 1.05 kB | ⚠  +3 B |
| Client `_error` Size | 9.66 kB | 8.19 kB | -1.47 kB |
| Client `_error` gzip Size | 3.52 kB | 3.12 kB | -404 B |
| Client `pages/index` Size | 298 B | 288 B | -10 B |
| Client `pages/index` gzip Size | 235 B | 222 B | -13 B |
| Client `pages/link` Size | 3.28 kB | 4.83 kB | ⚠  +1.54 kB |
| Client `pages/link` gzip Size | 1.49 kB | 2.11 kB | ⚠  +622 B |
| Client `pages/routerDirect` Size | 426 B | 411 B | -15 B |
| Client `pages/routerDirect` gzip Size | 304 B | 296 B | -8 B |
| Client `pages/withRouter` Size | 408 B | 393 B | -15 B |
| Client `pages/withRouter` gzip Size | 293 B | 280 B | -13 B |
| Client `main` Size | 24.4 kB | 23.3 kB | -1.1 kB |
| Client `main` gzip Size | 7.89 kB | 7.63 kB | -255 B |
| Client `commons` Size | 183 kB | 183 kB | ⚠  +164 B |
| Client `commons` gzip Size | 59.4 kB | 59.4 kB | ⚠  +85 B |
| Client `webpack` Size | 1.49 kB | 1.49 kB | -5 B |
| Client `webpack` gzip Size | 774 B | 769 B | -5 B |
| Base Rendered Size | 1.34 kB | 1.34 kB | ⚠  +2 B |
| Build Dir Size | 580 kB | 801 kB | ⚠  +221 kB |

Click to expand serverless stats

| | zeit/next.js master | zeit/next.js refs/tags/v8.1.1-canary.32 | Change |
| - | - | - | - |
| Build Duration | 14.4s | 17.2s | ⚠  +2.8s |
| `node_modules` Size | 43.7 MB | 40 MB | -3.67 MB |
| Total Bundle (main, webpack, commons) Size | 210 kB | 209 kB | -896 B |
| Total Bundle (main, webpack, commons) gzip Size | 68.5 kB | 68.3 kB | -180 B |
| Client `_app` Size | 2.49 kB | 2.54 kB | ⚠  +50 B |
| Client `_app` gzip Size | 1.04 kB | 1.05 kB | ⚠  +3 B |
| Client `_error` Size | 9.66 kB | 8.19 kB | -1.47 kB |
| Client `_error` gzip Size | 3.52 kB | 3.12 kB | -404 B |
| Client `pages/index` Size | 298 B | 288 B | -10 B |
| Client `pages/index` gzip Size | 235 B | 222 B | -13 B |
| Client `pages/link` Size | 3.28 kB | 4.83 kB | ⚠  +1.54 kB |
| Client `pages/link` gzip Size | 1.49 kB | 2.11 kB | ⚠  +622 B |
| Client `pages/routerDirect` Size | 426 B | 411 B | -15 B |
| Client `pages/routerDirect` gzip Size | 304 B | 296 B | -8 B |
| Client `pages/withRouter` Size | 408 B | 393 B | -15 B |
| Client `pages/withRouter` gzip Size | 293 B | 280 B | -13 B |
| Client `main` Size | 24.4 kB | 23.3 kB | -1.1 kB |
| Client `main` gzip Size | 7.89 kB | 7.63 kB | -255 B |
| Client `commons` Size | 183 kB | 183 kB | ⚠  +164 B |
| Client `commons` gzip Size | 59.4 kB | 59.4 kB | ⚠  +85 B |
| Client `webpack` Size | 1.49 kB | 1.49 kB | -5 B |
| Client `webpack` gzip Size | 774 B | 769 B | -5 B |
| Serverless `pages/link` Size | 337 kB | 342 kB | ⚠  +4.54 kB |
| Serverless `pages/link` gzip Size | 87.4 kB | 88.7 kB | ⚠  +1.37 kB |
| Serverless `pages/index` Size | 330 kB | 333 kB | ⚠  +2.91 kB |
| Serverless `pages/index` gzip Size | 85.4 kB | 86.3 kB | ⚠  +886 B |
| Serverless `pages/_error` Size | 331 kB | 334 kB | ⚠  +2.91 kB |
| Serverless `pages/_error` gzip Size | 85.3 kB | 86.1 kB | ⚠  +791 B |
| Serverless `pages/routerDirect` Size | 330 kB | 333 kB | ⚠  +2.91 kB |
| Serverless `pages/routerDirect` gzip Size | 85.5 kB | 86.3 kB | ⚠  +880 B |
| Serverless `pages/withRouter` Size | 330 kB | 333 kB | ⚠  +2.91 kB |
| Serverless `pages/withRouter` gzip Size | 85.6 kB | 86.4 kB | ⚠  +890 B |
| Build Dir Size | 2.12 MB | 2.37 MB | ⚠  +250 kB |


Yeah the Czech dataset is huge and it would be great to fully support it. I'll take a look at how you did it for the German HDT dataset!


Successfully aliased the URL <https://liganicer-f6ci5ey72.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


Hi,
I just gave it a quick look and I can see the button width in path bar is clipped to within 200 chars, which is nice!

I wonder would it be good to have it behave like the tabs in the browser, or the task list in the desktop panel, that as you open more and more tabs their width start to shrink, down to a prescribed minimal width?


[R/calc_binding_freqs.R:10:3:](https://github.com/richelbilderbeek/epitopeome/blob/0c11b54c4a7fefcebdd0f74d57bccff9432f7fcb/R/calc_binding_freqs.R#L10) *warning:* **no visible global function definition for ‘calc_binding_freqs_cpp’**
```r
  calc_binding_freqs_cpp(epitopeome)
  ^~~~~~~~~~~~~~~~~~~~~~
```


![](https://github.trello.services/images/mini-trello-icon.png) [abc](https://trello.com/c/ih0YjuLG/2-abc)


> Did you do something special to Docker Hub, uploading a manifest file or something?
Nope, at least I can't remember anything


your web app architecture should similar to https://anchormen.nl/wp-content/uploads/2018/07/architecture.png


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/discourse-theme-cli-console-app-to-help-you-build-themes/82950/97


Successfully aliased the URL <https://liganicer-8ebjzem9r.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


Successfully aliased the URL <https://laneconsultingco-1tp11jdsa.now.sh> to the following aliases.

* https://laneconsulting.co
* https://www.laneconsulting.co
* https://laneconsultingco.jameswlane.now.sh
* https://laneconsultingco-git-master.jameswlane.now.sh


Successfully aliased the URL <https://lab9-6w3we1s5s.now.sh> to the following aliases.

* https://lab9.thaon.now.sh
* https://lab9-git-master.thaon.now.sh


Sorry. Done.


[R/default_params_doc.R:3:62:](https://github.com/richelbilderbeek/netmhc2pan/blob/31908d70c12849b98b2072485fb5806d79f35a2b/R/default_params_doc.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' @param alleles one or more alleles, e.g. \code{DRB1_0101}.
                                                             ^
```
[R/get_default_netmhc2pan_bin_path.R:4:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/31908d70c12849b98b2072485fb5806d79f35a2b/R/get_default_netmhc2pan_bin_path.R#L4) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_bin_path <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:5:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/31908d70c12849b98b2072485fb5806d79f35a2b/R/get_default_netmhc2pan_subfolder.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_subfolder <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:6:13:](https://github.com/richelbilderbeek/netmhc2pan/blob/31908d70c12849b98b2072485fb5806d79f35a2b/R/get_default_netmhc2pan_subfolder.R#L6) *warning:* **no visible global function definition for ‘get_default_netmhc2pan_folder’**
```r
  file.path(get_default_netmhc2pan_folder(), "netMHCIIpan-3.2")
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


>Size of separator has nothing to do with count of items in resulting vector.

Really?
What is the possible upper bound & lower bound of split operation result when in.length = 10 and sep.length = 1?
And in.length = 10 and sep.length = 8?
Here are some examples:
```
in = "ababababab"
sep = 'b'

in = "abbbbbbbbc"
sep = "bbbbbbbb"
```


I dont think ticks are supported on QtQuick.Controls 2.4


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/master/668/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/master/668/display/redirect) (on internal Jenkins) failed in stage(s) 'Test run' 🔥 : org.jenkinsci.plugins.workflow.steps.FlowInterruptedException

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/master/668//console)
✅ Packages: [xamarin.ios-12.15.0.62.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/master/5fbf72195751af9f06c47db816d37a10ee8cfa92/668/package/xamarin.ios-12.15.0.62.pkg) [xamarin.mac-5.15.0.62.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/master/5fbf72195751af9f06c47db816d37a10ee8cfa92/668/package/xamarin.mac-5.15.0.62.pkg)
✅ [API Diff (from stable)](http://xamarin-storage/jenkins/xamarin-macios/master/5fbf72195751af9f06c47db816d37a10ee8cfa92/668/jenkins-results/api-diff/index.html)
✅ [API Diff (from PR only)](http://xamarin-storage/jenkins/xamarin-macios/master/5fbf72195751af9f06c47db816d37a10ee8cfa92/668/jenkins-results/apicomparison/api-diff.html) (no change)
✅ [Generator Diff](http://xamarin-storage/jenkins/xamarin-macios/master/5fbf72195751af9f06c47db816d37a10ee8cfa92/668/jenkins-results/generator-diff/index.html) (no change)


You may just use "if is_valid_date:"
This will check if the object evaluates to True. The typical values that are "False" are None, {}, [], 0, ''.


Successfully aliased the URL <https://liganicer-ftt0jjomo.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


w


Please use lower_underscore style for variables. CamelCase may only be used for ClassNames.


Successfully aliased the URL <https://liganicer-i4quj96yx.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


这个提交啊, excited


Successfully aliased the URL <https://jwlcloud-cfqa6l2vp.now.sh> to the following aliases.

* https://jwl.cloud
* https://www.jwl.cloud
* https://jwlcloud.jameswlane.now.sh
* https://jwlcloud-git-master.jameswlane.now.sh


Successfully aliased the URL <https://liganicer-h3ydxeno7.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


Successfully aliased the URL <https://now-examples-1wfq8quse.zeit.sh> to the following aliases.

* https://now-examples.zeit.sh
* https://now-examples-git-master.zeit.sh


revert


Successfully aliased the URL <https://liganicer-81erwa3pq.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


Successfully aliased the URL <https://jameswlanedev-739we6jz5.now.sh> to the following aliases.

* https://jameswlane.dev
* https://jameswlanedev.jameswlane.now.sh
* https://jameswlanedev-git-master.jameswlane.now.sh


Oh snap. That's nice that it actually works.


please use const/let


please use proper compartion for checking validity, keep an eye on the type matching


Successfully aliased the URL <https://jestexpress-g1z0azjoe.now.sh> to the following aliases.

* https://jest.express
* https://www.jest.express
* https://jestexpress.jameswlane.now.sh
* https://jestexpress-git-master.jameswlane.now.sh


[R/default_params_doc.R:3:62:](https://github.com/richelbilderbeek/netmhc2pan/blob/757bd6cfdaeeb0756144c5f1881c76bfc9b9707c/R/default_params_doc.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' @param alleles one or more alleles, e.g. \code{DRB1_0101}.
                                                             ^
```
[R/get_default_netmhc2pan_bin_path.R:4:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/757bd6cfdaeeb0756144c5f1881c76bfc9b9707c/R/get_default_netmhc2pan_bin_path.R#L4) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_bin_path <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:5:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/757bd6cfdaeeb0756144c5f1881c76bfc9b9707c/R/get_default_netmhc2pan_subfolder.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_subfolder <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:6:13:](https://github.com/richelbilderbeek/netmhc2pan/blob/757bd6cfdaeeb0756144c5f1881c76bfc9b9707c/R/get_default_netmhc2pan_subfolder.R#L6) *warning:* **no visible global function definition for ‘get_default_netmhc2pan_folder’**
```r
  file.path(get_default_netmhc2pan_folder(), "netMHCIIpan-3.2")
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


- [ ] [](url)


Successfully aliased the URL <https://experimentwithcom-ersdaifjk.now.sh> to the following aliases.

* https://experimentwith.com
* https://www.experimentwith.com
* https://experimentwithcom.jameswlane.now.sh
* https://experimentwithcom-git-master.jameswlane.now.sh


[R/default_params_doc.R:3:62:](https://github.com/richelbilderbeek/netmhc2pan/blob/be366830148cb82810ad8fa90f217ef76084f90f/R/default_params_doc.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' @param alleles one or more alleles, e.g. \code{DRB1_0101}.
                                                             ^
```
[R/get_default_netmhc2pan_bin_path.R:4:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/be366830148cb82810ad8fa90f217ef76084f90f/R/get_default_netmhc2pan_bin_path.R#L4) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_bin_path <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:5:1:](https://github.com/richelbilderbeek/netmhc2pan/blob/be366830148cb82810ad8fa90f217ef76084f90f/R/get_default_netmhc2pan_subfolder.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_default_netmhc2pan_subfolder <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_default_netmhc2pan_subfolder.R:6:13:](https://github.com/richelbilderbeek/netmhc2pan/blob/be366830148cb82810ad8fa90f217ef76084f90f/R/get_default_netmhc2pan_subfolder.R#L6) *warning:* **no visible global function definition for ‘get_default_netmhc2pan_folder’**
```r
  file.path(get_default_netmhc2pan_folder(), "netMHCIIpan-3.2")
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


please use hash codes for colors, thats a more exact definition


Any particular reasoning for "idFeed" and "idGuild" over "FeedId" and "GuildId"?


@abrinke1 It is the field tfMuonRawTrAdd

Check also the line 44 of the updated file L1Trigger/L1TNtuples/src/L1AnalysisL1UpgradeTfMuon.cc
It uses the static function RegionalMuonRawDigiTranslator::generateRawTrkAddress which operates differently with different track finders.


Successfully aliased the URL <https://transfer-l95tp7u9l.now.sh> to the following aliases.

* https://transfer.brvklin.now.sh
* https://transfer-git-master.brvklin.now.sh


Successfully aliased the URL <https://jameswlanecom-b54rh3woh.now.sh> to the following aliases.

* https://jameswlane.com
* https://www.jameswlane.com
* https://jameswlanecom.jameswlane.now.sh
* https://jameswlanecom-git-master.jameswlane.now.sh


I had this thought when I tested the changes. However I need the filter text as-is for reverse lookup purpose and for filter expression purpose (the "allowed" built-in filter expression looks for `#@#`). What I could try is to line-through only the filter part, and leave out the `#@#` part: #@#~~.example~~


please remove all the console.log-s


Following on from #479


I think the cache invalidation should be bottom up and not top down. Otherwise you can't detect if a daughter particle has changed...


please use const/let and remove console.log


what is the purpose of this for cycle?


Successfully aliased the URL <https://liganicer-qj01e4gt2.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


please always insert a space between the selector and the curly bracket


Successfully aliased the URL <https://liganicer-n35txtk0u.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


missing semicolons at the end of the lines


please select a more descriptive title for the test case


It's a good idea to put the consts to the top of the page, but in this way your todos are going to be loaded every single time the app runs. If you would have some other features, it would be more elegant to keep the todos somewhere else. Maybe somewhere around the line 15,inside the endpoint logic, so that way it would only be ran if the get request goes to the / endpoint.

```
app.get('/', (req, res) => {
  const todos = [
    'get up',
    'survive',
    'go back to bed',
  ];
```


styleguide: spaces, semicolons, single quotes


just had to remove children as a proptype, which should not have been there anyways 👏


Hi, why you removed ES256K from the library?


why do we need to put the space concatenation into a separate command?


[R/calc_binding_freqs.R:10:3:](https://github.com/richelbilderbeek/epitopeome/blob/0c11b54c4a7fefcebdd0f74d57bccff9432f7fcb/R/calc_binding_freqs.R#L10) *warning:* **no visible global function definition for ‘calc_binding_freqs_cpp’**
```r
  calc_binding_freqs_cpp(epitopeome)
  ^~~~~~~~~~~~~~~~~~~~~~
```


Hrm, so the secret is the account username and password, and I dont see any expiration when I request an authorization token via curl.

Also the errors start everytime I restart HASS, so I am not sure that lines up w/ the expiration theory...

Is there a cache somewhere that I can clear out perhaps?


@cheme it's used during `storage_root` computation - I suppose to prevent traversing all possible child storages and only going throught the stuff that changed.


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Please commit more often, you've only had 4 commits in the past three weeks, which is not enough. :thinking:


please do not overwrite the incoming parameter


what is ```x``` stand for?


develop (Myoldmopar) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (6 of 6 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


the body of this 'if' could be in a simple 'else' case instead of writing the conditions


I would recommend to use ```Array.map```


@dagwieers the function setIsFolder is Kodi 18 api only, and will break Kodi 17 versions like Libreelec 8.2.5


SoundPlayer реалзиует интферфейс IDisposable, а значит перед уничтожением должен быть корректно завершен, т.е. у него надо вызвать метод Dispose().
НО помни, что диспоуз SoundPlayer  у должен вызыватся не зависимо от того вызывается алгоритм из финализатора или при явном вызовые Dispose нашего плеера.


Kontrolovala jsem to a když tam bude víc šifer PENDING, tak to nespadne, jenom to při zjišťování aktuální šifry vybere první ze seznamu.


Picky TravisCI job 😆


Successfully aliased the URL <https://liganicer-qwtnqed0m.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


alternatively, you could also use the toggle() method on the class list for a shorter solution. Nice job overall 👍


Please use the hash value of colors


The buttons already have a minimum size based on their label (unlike e.g.
tabs which are usually equal size). The consequence of shrinking further
would be that you have ellipsis in each button, which looks really bad in
my opinion. So I choose to only shrink the last item and prefer scrolling
to reveal items that won't fit.

-- Jaap

On Fri, May 17, 2019 at 1:34 PM Xunius <notifications@github.com> wrote:

> Hi,
> I just gave it a quick look and I can see the button width in path bar is
> clipped to within 200 chars, which is nice!
>
> I wonder would it be good to have it behave like the tabs in the browser,
> or the task list in the desktop panel, that as you open more and more tabs
> their width start to shrink, down to a prescribed minimal width?
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/zim-desktop-wiki/zim-desktop-wiki/commit/1ae754573e42b5d899ee82e1fc02b047303a1fa7?email_source=notifications&email_token=AAJQYHTZEH2WZQPODKF4NRLPV2J4PA5CNFSM4HNUPU4KYY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBAAWSW#commitcomment-33577558>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AAJQYHXSWD3QD5X46ICSVULPV2J4PANCNFSM4HNUPU4A>
> .
>


Successfully aliased the URL <https://liganicer-o2exq3y16.now.sh> to the following aliases.

* https://liganicer.liganicer.now.sh
* https://liganicer-git-master.liganicer.now.sh


full_storage_root should do that, there is probably something wrong somewhere, will  do some debugging after lunch


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develop (Myoldmopar) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


E.g. in your 2nd example you'll reserve 1 item (10 / 8) but it's split into 2 parts.


`if (filled) {` would be enough, since it is evaluated as a boolean


please use const/let


Thanks for the feedback, very much appreciated. All comments have been implemented. I added address(this) to the createKeyHash. In regards to the kill function, I feel like there should be a time delay to allow people to withdraw funds. In it's current state, an exit scam is possible. Is this typical?


please remove console logs


what is the purpose of this for loop?


Try to work less with the built-in colors and pick hexadecimal or rgba codes instead. Good job with the CSS day otherwise :+1:


можно еще проще  const todoData = this.state.todoData.filter(el => el.id !== id)


Possible lower bound is `0` and upper bound is `in.length + 1`


[R/get_default_netmhc2pan_subfolder.R:8:70:](https://github.com/richelbilderbeek/netmhc2pan/blob/a5210e59feb6403cbe89086ef6dbc7b78a2b857d/R/get_default_netmhc2pan_subfolder.R#L8) *style:* **Trailing whitespace is superfluous.**
```r
    # The Travis build script sources this function before installing
                                                                     ^
```
[R/get_default_netmhc2pan_subfolder.R:9:67:](https://github.com/richelbilderbeek/netmhc2pan/blob/a5210e59feb6403cbe89086ef6dbc7b78a2b857d/R/get_default_netmhc2pan_subfolder.R#L9) *style:* **Trailing whitespace is superfluous.**
```r
    # netmhc2pan. sourcing this will then result in a 'cannot find
                                                                  ^
```


I think this caused tests to start failing: https://ci.theforeman.org/job/smart-proxy-openscap-test/9/


please avoid class names, which have meaning in other context, like ```js, javascript, mysql, append, color```


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


🔥 Device tests completed (Failed) on TvOS on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=2683301)(TvOS): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/d16-2/b34393e6801d61850bcc31b9dbb3b2c1ca0c1756/2683301/device-tests/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary>6 tests failed, 37 tests skipped, 190 tests passed.</summary>

## Failed tests

 * System.Net.Http/tvOS - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * [NUnit] Mono BCL tests group 1/tvOS - device/AssemblyBuildTarget: SDK framework (release): Failed (Install failed, exit code: 137.)
 * [NUnit] Mono BCL tests group 2/tvOS - device/AssemblyBuildTarget: SDK framework (release): Failed (Install failed, exit code: 137.)
 * [xUnit] Mono BCL tests group 3/tvOS - device/AssemblyBuildTarget: SDK framework (release): Failed (Install failed, exit code: 137.)
 * [xUnit] Mono BCL tests group 4/tvOS - device/Release: Failed (Install failed, exit code: 137.)
 * [xUnit] Mono BCL tests group 4/tvOS - device/AssemblyBuildTarget: SDK framework (release): Failed (Install failed, exit code: 137.)
</details>


please be consistent with single quotes


https://github.com/paritytech/substrate/blob/faef1cd70707363581861a1eaf27893cc50606e8/core/state-machine/src/backend.rs#L128-L137

We do that here - I guess instead we would have to enumerate all the children somehow.


why deprecate muli-layer? It seems reasonable to indicate that the support is multi-layer and have and extended explanation including poison and a see also ref to poison


константы в руби определяются в верхнем регистре, например `CONST`, а так получилась переменная


Just to be nitpicking: the shorthand for kilo is k, not capital K.


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please remove console.log, use const/let


Thank you!