Thanks again for the hint; without ReLAPACK `*sytrf` benchmarks are up to 20 % faster (and less memory-intensive for large arrays), and this also fixes the remaining failures and occasional segfault I had with Scipy's `linalg` tests! I consider this settled.


Without these settings I would be getting massive AV sync issues on VP9 4K video


Successfully aliased the URL <https://styled-react-boilerplate-iz8jm2d2f.now.sh> to the following aliases.

* https://styled-react-boilerplate.now.sh
* https://styled-react-boilerplate.akepinski.now.sh
* https://styled-react-boilerplate-git-master.akepinski.now.sh


[e backport](https://git.enlightenment.org/core/enlightenment.git/commit/src/modules/winlist/e_mod_main.c?id=09aefdeb892f569fd21f63f3296e9c5e747e30a0)


Inicio de Registro de usuario


Enemigo muy poderoso


After this commit, gadgets no longer work, and it seems like it is because of this line.
`net.minecraftforge.eventbus.api.IEventBus` writes:
```java
/**
 * Submit the event for dispatch to appropriate listeners
 *
 * @param event The event to dispatch to listeners
 * @return true if the event was {@link Cancelable} cancelled
 */
boolean post(Event event);
```
So all of the uses should not have the `not` logic.


Mobile money flow > solar individual payment collection accounts and customers


Successfully aliased the URL <https://spotify-demo-p0p8z3jpj.now.sh> to the following aliases.

* https://spotify-demo.now.sh
* https://spotify-demo.walterzalazarmdp.now.sh
* https://spotify-demo-git-master.walterzalazarmdp.now.sh


@JuliaRegistrator `register()`


Registration pull request created: [JuliaRegistries/General/539](https://github.com/JuliaRegistries/General/pull/539)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v2.1.4 -m "<description of version>" b5c386d841022259e1bcafb580cf5f8aeed19616
git push origin v2.1.4
```


W ArrayList 0 odpowiada pierwszemu elementowi kolekcji. Przy teście metody getFigure z wartością 0, otrzymałem przewidywaną wartość, którą jest exampleCircle


> could you please create an issue for fixing it?

#21 has been created.


Ich hab bis auf das eine Mal bei der Alpha2 keine "unresponsiveness" mehr gehabt, ein Dauerproblem ist das also sowieso nicht, aber eben doch ungewöhnlich da es bisher (von Fennec abgesehen) nie so ein Problem gab, soweit ich mich erinnern kann.

Ja, ich kenn das Spiel. 😏


@JuliaRegistrator register()


Registration pull request created: [JuliaRegistries/General/540](https://github.com/JuliaRegistries/General/pull/540)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.0.3 -m "<description of version>" ebbd4446e7678ccc7c55ecf3c4320ace1fa8b314
git push origin v1.0.3
```


Successfully aliased the URL <https://jesmodrazik-52tm9vzdu.now.sh> to the following aliases.

* https://jesmodrazik.fr
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The function's blocks depth is still assured?


Oh, I thought it to be the other way around...


Well, we can revert that


Thanks :)


Registration pull request created: [JuliaRegistries/General/541](https://github.com/JuliaRegistries/General/pull/541)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.5.1 -m "<description of version>" 315a8a00ef960cd8f91e8f3c87120f26e3839a14
git push origin v1.5.1
```


In that case the Pa_IsStreamStopped code at line 85 can be removed too. I'm sure I had a reason for adding this code but I can't confirm its necessity now. I may have misunderstood what the flag meant.


"no shortening of messages" doesn't seem to be a correct description of what "S" does, given the other hunks of this diff below.


Never mind, I get it now.


In a related discussion, ReLAPACK's author has acknowledged that some of his recursive functions can show an undesirable behaviour with deep recursion and excessive stack usage for some problem sizes - I expect that will be fixed eventually. (One of my other recent changes to the copy of his code in OpenBLAS disables some of the deep recursion in GBTRF, perhaps the same would be useful as an interim measure in recursive SYTRF as well.)


The null test needs to be first (if, not if-else). The evaluation of the first if-condition (cursor.moveToFirst()) will cause a NullPointerException if cursor is null.


Successfully aliased the URL <https://syllabicsapp-qkdoxhpod.now.sh> to the following aliases.

* https://syllabics.app
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* https://syllabicsapp-git-production.eddieantonio.now.sh


I like it, @smuemd 👍


### Visual regression report:

[![Visual report](https://circleci.com/gh/stevector/nerdologues-d8/3602/artifacts/0/root/project/backstop_data/bitmaps_test/20190504-205236/581793539_Clips_by_person_0_document_0_desktop.png)](https://circleci.com/gh/stevector/nerdologues-d8/3602/artifacts/0/root/project/backstop_data/html_report/index.html)


solves #27


@foxik Nevim jestli chapu co konkretne nezduraznovat. Mas na mysli to "which did not support it at the time ...", a mit jenom:

> Our implementation however does not use this approach. Instead, we handle the problem explicitly by detecting the pathological cases, as described in \autoref{chapter:software}.

?


[R/assign.covergence.R:45:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L45) *style:* **Variable or function name should be snake_case.**
```r
assign.convergence <- function(test, burn_in=0, iter=2000,
^~~~~~~~~~~~~~~~~~
```
[R/assign.covergence.R:47:63:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L47) *style:* **Variable or function name should be snake_case.**
```r
                                           "gamma", "sigma"), whichGene,
                                                              ^~~~~~~~~
```
[R/assign.covergence.R:48:32:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L48) *style:* **Variable or function name should be snake_case.**
```r
                               whichSample, whichPath){
                               ^~~~~~~~~~~
```
[R/assign.covergence.R:48:45:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L48) *style:* **Variable or function name should be snake_case.**
```r
                               whichSample, whichPath){
                                            ^~~~~~~~~
```
[R/assign.covergence.R:50:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L50) *style:* **Variable or function name should be snake_case.**
```r
    B_pos <- test$B_mcmc[burn_in:iter, whichGene]
    ^~~~~
```
[R/assign.covergence.R:57:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L57) *style:* **Variable or function name should be snake_case.**
```r
    S_pos <- test$S_mcmc[burn_in:iter, whichGene, whichPath]
    ^~~~~
```
[R/assign.covergence.R:66:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.covergence.R#L66) *style:* **Variable or function name should be snake_case.**
```r
    Delta_pos <- test$Delta_mcmc[burn_in:iter, whichGene, whichPath]
    ^~~~~~~~~
```
[R/assign.cv.output.R:71:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L71) *style:* **Variable or function name should be snake_case.**
```r
assign.cv.output <- function(processed.data, mcmc.pos.mean.trainingData,
^~~~~~~~~~~~~~~~
```
[R/assign.cv.output.R:71:30:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L71) *style:* **Variable or function name should be snake_case.**
```r
assign.cv.output <- function(processed.data, mcmc.pos.mean.trainingData,
                             ^~~~~~~~~~~~~~
```
[R/assign.cv.output.R:71:46:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L71) *style:* **Variable or function name should be snake_case.**
```r
assign.cv.output <- function(processed.data, mcmc.pos.mean.trainingData,
                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assign.cv.output.R:72:30:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L72) *style:* **Variable or function name should be snake_case.**
```r
                             trainingData, trainingLabel, adaptive_B=FALSE,
                             ^~~~~~~~~~~~
```
[R/assign.cv.output.R:72:44:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L72) *style:* **Variable or function name should be snake_case.**
```r
                             trainingData, trainingLabel, adaptive_B=FALSE,
                                           ^~~~~~~~~~~~~
```
[R/assign.cv.output.R:72:59:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L72) *style:* **Variable or function name should be snake_case.**
```r
                             trainingData, trainingLabel, adaptive_B=FALSE,
                                                          ^~~~~~~~~~
```
[R/assign.cv.output.R:73:30:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L73) *style:* **Variable or function name should be snake_case.**
```r
                             adaptive_S=FALSE, mixture_beta=TRUE, outputDir){
                             ^~~~~~~~~~
```
[R/assign.cv.output.R:73:67:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.cv.output.R#L73) *style:* **Variable or function name should be snake_case.**
```r
                             adaptive_S=FALSE, mixture_beta=TRUE, outputDir){
                                                                  ^~~~~~~~~
```
[R/assign.mcmc.R:110:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L110) *style:* **Variable or function name should be snake_case.**
```r
assign.mcmc <- function(Y, Bg, X, Delta_prior_p, iter=2000, adaptive_B=TRUE,
^~~~~~~~~~~
```
[R/assign.mcmc.R:110:25:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L110) *style:* **Variable or function name should be snake_case.**
```r
assign.mcmc <- function(Y, Bg, X, Delta_prior_p, iter=2000, adaptive_B=TRUE,
                        ^
```
[R/assign.mcmc.R:110:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L110) *style:* **Variable or function name should be snake_case.**
```r
assign.mcmc <- function(Y, Bg, X, Delta_prior_p, iter=2000, adaptive_B=TRUE,
                           ^~
```
[R/assign.mcmc.R:110:32:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L110) *style:* **Variable or function name should be snake_case.**
```r
assign.mcmc <- function(Y, Bg, X, Delta_prior_p, iter=2000, adaptive_B=TRUE,
                               ^
```
[R/assign.mcmc.R:110:35:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L110) *style:* **Variable or function name should be snake_case.**
```r
assign.mcmc <- function(Y, Bg, X, Delta_prior_p, iter=2000, adaptive_B=TRUE,
                                  ^~~~~~~~~~~~~
```
[R/assign.mcmc.R:110:61:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L110) *style:* **Variable or function name should be snake_case.**
```r
assign.mcmc <- function(Y, Bg, X, Delta_prior_p, iter=2000, adaptive_B=TRUE,
                                                            ^~~~~~~~~~
```
[R/assign.mcmc.R:111:25:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L111) *style:* **Variable or function name should be snake_case.**
```r
                        adaptive_S=FALSE, mixture_beta=TRUE, sigma_sZero = 0.01,
                        ^~~~~~~~~~
```
[R/assign.mcmc.R:111:62:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L111) *style:* **Variable or function name should be snake_case.**
```r
                        adaptive_S=FALSE, mixture_beta=TRUE, sigma_sZero = 0.01,
                                                             ^~~~~~~~~~~
```
[R/assign.mcmc.R:112:25:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L112) *style:* **Variable or function name should be snake_case.**
```r
                        sigma_sNonZero = 1, p_beta = 0.01, sigma_bZero = 0.01,
                        ^~~~~~~~~~~~~~
```
[R/assign.mcmc.R:112:60:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L112) *style:* **Variable or function name should be snake_case.**
```r
                        sigma_sNonZero = 1, p_beta = 0.01, sigma_bZero = 0.01,
                                                           ^~~~~~~~~~~
```
[R/assign.mcmc.R:113:25:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L113) *style:* **Variable or function name should be snake_case.**
```r
                        sigma_bNonZero = 1, alpha_tau = 1, beta_tau = 0.01,
                        ^~~~~~~~~~~~~~
```
[R/assign.mcmc.R:114:25:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L114) *style:* **Variable or function name should be snake_case.**
```r
                        Bg_zeroPrior=TRUE, S_zeroPrior=FALSE, ECM = FALSE,
                        ^~~~~~~~~~~~
```
[R/assign.mcmc.R:114:44:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L114) *style:* **Variable or function name should be snake_case.**
```r
                        Bg_zeroPrior=TRUE, S_zeroPrior=FALSE, ECM = FALSE,
                                           ^~~~~~~~~~~
```
[R/assign.mcmc.R:114:63:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L114) *style:* **Variable or function name should be snake_case.**
```r
                        Bg_zeroPrior=TRUE, S_zeroPrior=FALSE, ECM = FALSE,
                                                              ^~~
```
[R/assign.mcmc.R:117:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L117) *style:* **Variable or function name should be snake_case.**
```r
  Y <- as.matrix(Y)
  ^
```
[R/assign.mcmc.R:120:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L120) *style:* **Variable or function name should be snake_case.**
```r
  S <- as.matrix(X)
  ^
```
[R/assign.mcmc.R:125:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L125) *style:* **Variable or function name should be snake_case.**
```r
    mu_B_0 <- Bg
    ^~~~~~
```
[R/assign.mcmc.R:128:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L128) *style:* **Variable or function name should be snake_case.**
```r
      mu_B_0 <- rep(0, n)
      ^~~~~~
```
[R/assign.mcmc.R:130:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L130) *style:* **Variable or function name should be snake_case.**
```r
      mu_B_0 <- Bg
      ^~~~~~
```
[R/assign.mcmc.R:134:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L134) *style:* **Variable or function name should be snake_case.**
```r
  s_B_0 <- rep(10 ^ 2, n)
  ^~~~~
```
[R/assign.mcmc.R:135:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L135) *style:* **Variable or function name should be snake_case.**
```r
  s_B_0_inv <- 1 / (s_B_0)
  ^~~~~~~~~
```
[R/assign.mcmc.R:136:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L136) *style:* **Variable or function name should be snake_case.**
```r
  sB0_inv_muB0 <-  s_B_0_inv * mu_B_0
  ^~~~~~~~~~~~
```
[R/assign.mcmc.R:140:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L140) *style:* **Variable or function name should be snake_case.**
```r
    S_0 <- S
    ^~~
```
[R/assign.mcmc.R:143:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L143) *style:* **Variable or function name should be snake_case.**
```r
      S_0 <- matrix(0, n, m)
      ^~~
```
[R/assign.mcmc.R:145:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L145) *style:* **Variable or function name should be snake_case.**
```r
      S_0 <- S
      ^~~
```
[R/assign.mcmc.R:157:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L157) *style:* **Variable or function name should be snake_case.**
```r
  onesMK <- matrix(rep(1, m * k), m, k)
  ^~~~~~
```
[R/assign.mcmc.R:162:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L162) *style:* **Variable or function name should be snake_case.**
```r
  onesNM <- matrix(rep(1, n * m), n, m)
  ^~~~~~
```
[R/assign.mcmc.R:168:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L168) *style:* **Variable or function name should be snake_case.**
```r
  P_B <- matrix(nrow = iter, ncol = n)
  ^~~
```
[R/assign.mcmc.R:169:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L169) *style:* **Variable or function name should be snake_case.**
```r
  P_S <- array(dim = c(iter, n, m))
  ^~~
```
[R/assign.mcmc.R:170:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L170) *style:* **Variable or function name should be snake_case.**
```r
  P_delta <- array(dim = c(iter, n, m))
  ^~~~~~~
```
[R/assign.mcmc.R:171:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L171) *style:* **Variable or function name should be snake_case.**
```r
  P_delta_pr <- array(dim = c(iter, n, m))
  ^~~~~~~~~~
```
[R/assign.mcmc.R:172:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L172) *style:* **Variable or function name should be snake_case.**
```r
  P_beta <- array(dim = c(iter, m, k))
  ^~~~~~
```
[R/assign.mcmc.R:173:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L173) *style:* **Variable or function name should be snake_case.**
```r
  P_gamma <- array(dim = c(iter, m, k))
  ^~~~~~~
```
[R/assign.mcmc.R:174:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L174) *style:* **Variable or function name should be snake_case.**
```r
  P_kappa <- array(dim = c(iter, m, k))
  ^~~~~~~
```
[R/assign.mcmc.R:175:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L175) *style:* **Variable or function name should be snake_case.**
```r
  P_gamma_pr <- array(dim = c(iter, m, k))
  ^~~~~~~~~~
```
[R/assign.mcmc.R:176:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L176) *style:* **Variable or function name should be snake_case.**
```r
  P_tau2 <- matrix(nrow = iter, ncol = n)
  ^~~~~~
```
[R/assign.mcmc.R:180:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L180) *style:* **Variable or function name should be snake_case.**
```r
    B_temp <- msm::rtnorm(n, 0, 1, lower = 0)
    ^~~~~~
```
[R/assign.mcmc.R:182:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L182) *style:* **Variable or function name should be snake_case.**
```r
    B_temp <- mu_B_0
    ^~~~~~
```
[R/assign.mcmc.R:185:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L185) *style:* **Variable or function name should be snake_case.**
```r
    S_temp <- S
    ^~~~~~
```
[R/assign.mcmc.R:187:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L187) *style:* **Variable or function name should be snake_case.**
```r
    S_temp <- S_0
    ^~~~~~
```
[R/assign.mcmc.R:230:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L230) *style:* **Variable or function name should be snake_case.**
```r
      s_B_1 <- 1 / (k * tau_temp + s_B_0_inv)
      ^~~~~
```
[R/assign.mcmc.R:231:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L231) *style:* **Variable or function name should be snake_case.**
```r
      J <- apply(Y - tmp0, 1, sum)
      ^
```
[R/assign.mcmc.R:232:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L232) *style:* **Variable or function name should be snake_case.**
```r
      mu_B_1 <- s_B_1 * (tau_temp * J + sB0_inv_muB0)
      ^~~~~~
```
[R/assign.mcmc.R:234:9:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L234) *style:* **Variable or function name should be snake_case.**
```r
        B_temp <- mu_B_1
        ^~~~~~
```
[R/assign.mcmc.R:236:9:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L236) *style:* **Variable or function name should be snake_case.**
```r
        B_temp <- stats::rnorm(n, mu_B_1, sqrt(s_B_1))
        ^~~~~~
```
[R/assign.mcmc.R:240:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L240) *style:* **Variable or function name should be snake_case.**
```r
    B_rep <- matrix(rep(B_temp, k), n, k)
    ^~~~~
```
[R/assign.mcmc.R:241:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L241) *style:* **Variable or function name should be snake_case.**
```r
    Y_minus_B_rep <- Y - B_rep
    ^~~~~~~~~~~~~
```
[R/assign.mcmc.R:286:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L286) *style:* **Variable or function name should be snake_case.**
```r
      mu_S_0 <- ifelse(delta_temp == 1, S_0, 0)
      ^~~~~~
```
[R/assign.mcmc.R:289:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L289) *style:* **Variable or function name should be snake_case.**
```r
      s_S_inv_0 <- 1 / ifelse(delta_temp == 1, sigma_s2 ^ 2, sigma_s1 ^ 2)
      ^~~~~~~~~
```
[R/assign.mcmc.R:291:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L291) *style:* **Variable or function name should be snake_case.**
```r
      s_S_inv_1 <- 1 / (as.matrix(tau_temp) %*% t(as.matrix(apply(beta_temp ^ 2, 1, sum))) + s_S_inv_0)
      ^~~~~~~~~
```
[R/assign.mcmc.R:294:9:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L294) *style:* **Variable or function name should be snake_case.**
```r
        E1 <-  Y_minus_B_rep - S_temp[, -j, drop = FALSE] %*% beta_temp[-j, , drop = FALSE]
        ^~
```
[R/assign.mcmc.R:295:9:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.mcmc.R#L295) *style:* **Variable or function name should be snake_case.**
```r
        mu_S_1 <- s_S_inv_1[, j] * (tau_temp * (E1 %*% beta_temp[j, ]) + tmp4[, j])
        ^~~~~~
```
[R/assign.output.R:79:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L79) *style:* **Variable or function name should be snake_case.**
```r
assign.output <- function(processed.data, mcmc.pos.mean.testData, trainingData,
^~~~~~~~~~~~~
```
[R/assign.output.R:79:27:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L79) *style:* **Variable or function name should be snake_case.**
```r
assign.output <- function(processed.data, mcmc.pos.mean.testData, trainingData,
                          ^~~~~~~~~~~~~~
```
[R/assign.output.R:79:43:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L79) *style:* **Variable or function name should be snake_case.**
```r
assign.output <- function(processed.data, mcmc.pos.mean.testData, trainingData,
                                          ^~~~~~~~~~~~~~~~~~~~~~
```
[R/assign.output.R:79:67:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L79) *style:* **Variable or function name should be snake_case.**
```r
assign.output <- function(processed.data, mcmc.pos.mean.testData, trainingData,
                                                                  ^~~~~~~~~~~~
```
[R/assign.output.R:80:27:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L80) *style:* **Variable or function name should be snake_case.**
```r
                          testData, trainingLabel, testLabel, geneList,
                          ^~~~~~~~
```
[R/assign.output.R:80:37:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L80) *style:* **Variable or function name should be snake_case.**
```r
                          testData, trainingLabel, testLabel, geneList,
                                    ^~~~~~~~~~~~~
```
[R/assign.output.R:80:52:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L80) *style:* **Variable or function name should be snake_case.**
```r
                          testData, trainingLabel, testLabel, geneList,
                                                   ^~~~~~~~~
```
[R/assign.output.R:80:63:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L80) *style:* **Variable or function name should be snake_case.**
```r
                          testData, trainingLabel, testLabel, geneList,
                                                              ^~~~~~~~
```
[R/assign.output.R:81:27:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L81) *style:* **Variable or function name should be snake_case.**
```r
                          adaptive_B=TRUE, adaptive_S=FALSE, mixture_beta=TRUE,
                          ^~~~~~~~~~
```
[R/assign.output.R:81:44:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L81) *style:* **Variable or function name should be snake_case.**
```r
                          adaptive_B=TRUE, adaptive_S=FALSE, mixture_beta=TRUE,
                                           ^~~~~~~~~~
```
[R/assign.output.R:82:27:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L82) *style:* **Variable or function name should be snake_case.**
```r
                          outputDir){
                          ^~~~~~~~~
```
[R/assign.output.R:95:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L95) *style:* **Variable or function name should be snake_case.**
```r
    pathName <- names(trainingLabel)[-1]
    ^~~~~~~~
```
[R/assign.output.R:97:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.output.R#L97) *style:* **Variable or function name should be snake_case.**
```r
    pathName <- names(geneList)
    ^~~~~~~~
```
[R/assign.preprocess.R:105:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L105) *style:* **Variable or function name should be snake_case.**
```r
assign.preprocess <- function(trainingData=NULL, testData, anchorGenes=NULL,
^~~~~~~~~~~~~~~~~
```
[R/assign.preprocess.R:105:31:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L105) *style:* **Variable or function name should be snake_case.**
```r
assign.preprocess <- function(trainingData=NULL, testData, anchorGenes=NULL,
                              ^~~~~~~~~~~~
```
[R/assign.preprocess.R:105:50:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L105) *style:* **Variable or function name should be snake_case.**
```r
assign.preprocess <- function(trainingData=NULL, testData, anchorGenes=NULL,
                                                 ^~~~~~~~
```
[R/assign.preprocess.R:105:60:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L105) *style:* **Variable or function name should be snake_case.**
```r
assign.preprocess <- function(trainingData=NULL, testData, anchorGenes=NULL,
                                                           ^~~~~~~~~~~
```
[R/assign.preprocess.R:106:31:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L106) *style:* **Variable or function name should be snake_case.**
```r
                              excludeGenes=NULL, trainingLabel, geneList=NULL,
                              ^~~~~~~~~~~~
```
[R/assign.preprocess.R:106:50:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L106) *style:* **Variable or function name should be snake_case.**
```r
                              excludeGenes=NULL, trainingLabel, geneList=NULL,
                                                 ^~~~~~~~~~~~~
```
[R/assign.preprocess.R:106:65:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L106) *style:* **Variable or function name should be snake_case.**
```r
                              excludeGenes=NULL, trainingLabel, geneList=NULL,
                                                                ^~~~~~~~
```
[R/assign.preprocess.R:107:31:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L107) *style:* **Variable or function name should be snake_case.**
```r
                              n_sigGene=NA, theta0=0.05, theta1=0.9, pctUp=0.5,
                              ^~~~~~~~~
```
[R/assign.preprocess.R:107:70:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.preprocess.R#L107) *style:* **Variable or function name should be snake_case.**
```r
                              n_sigGene=NA, theta0=0.05, theta1=0.9, pctUp=0.5,
                                                                     ^~~~~
```
[R/assign.summary.R:63:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L63) *style:* **Variable or function name should be snake_case.**
```r
assign.summary <- function(test, burn_in=1000, iter=2000, adaptive_B=TRUE,
^~~~~~~~~~~~~~
```
[R/assign.summary.R:63:59:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L63) *style:* **Variable or function name should be snake_case.**
```r
assign.summary <- function(test, burn_in=1000, iter=2000, adaptive_B=TRUE,
                                                          ^~~~~~~~~~
```
[R/assign.summary.R:64:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L64) *style:* **Variable or function name should be snake_case.**
```r
                           adaptive_S=FALSE, mixture_beta=TRUE){
                           ^~~~~~~~~~
```
[R/assign.summary.R:74:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L74) *style:* **Variable or function name should be snake_case.**
```r
    B_pos <- test$B_mcmc[burn_in:iter, ]
    ^~~~~
```
[R/assign.summary.R:75:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L75) *style:* **Variable or function name should be snake_case.**
```r
    B_pos_mean <- apply(B_pos, 2, mean)
    ^~~~~~~~~~
```
[R/assign.summary.R:89:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L89) *style:* **Variable or function name should be snake_case.**
```r
    S_pos <- test$S_mcmc[burn_in:iter, , , drop = FALSE]
    ^~~~~
```
[R/assign.summary.R:90:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L90) *style:* **Variable or function name should be snake_case.**
```r
    S_pos_mean <- apply(S_pos, 2:3, mean)
    ^~~~~~~~~~
```
[R/assign.summary.R:91:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L91) *style:* **Variable or function name should be snake_case.**
```r
    Delta_pos <- test$Delta_mcmc[burn_in:iter, , , drop = FALSE]
    ^~~~~~~~~
```
[R/assign.summary.R:92:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.summary.R#L92) *style:* **Variable or function name should be snake_case.**
```r
    Delta_pos_mean <- apply(Delta_pos, 2:3, mean)
    ^~~~~~~~~~~~~~
```
[R/assign.wrapper.R:118:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L118) *style:* **Variable or function name should be snake_case.**
```r
assign.wrapper <- function(trainingData = NULL, testData, trainingLabel,
^~~~~~~~~~~~~~
```
[R/assign.wrapper.R:118:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L118) *style:* **Variable or function name should be snake_case.**
```r
assign.wrapper <- function(trainingData = NULL, testData, trainingLabel,
                           ^~~~~~~~~~~~
```
[R/assign.wrapper.R:118:49:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L118) *style:* **Variable or function name should be snake_case.**
```r
assign.wrapper <- function(trainingData = NULL, testData, trainingLabel,
                                                ^~~~~~~~
```
[R/assign.wrapper.R:118:59:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L118) *style:* **Variable or function name should be snake_case.**
```r
assign.wrapper <- function(trainingData = NULL, testData, trainingLabel,
                                                          ^~~~~~~~~~~~~
```
[R/assign.wrapper.R:119:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L119) *style:* **Variable or function name should be snake_case.**
```r
                           testLabel = NULL, geneList = NULL,
                           ^~~~~~~~~
```
[R/assign.wrapper.R:119:46:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L119) *style:* **Variable or function name should be snake_case.**
```r
                           testLabel = NULL, geneList = NULL,
                                             ^~~~~~~~
```
[R/assign.wrapper.R:120:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L120) *style:* **Variable or function name should be snake_case.**
```r
                           anchorGenes = NULL, excludeGenes = NULL,
                           ^~~~~~~~~~~
```
[R/assign.wrapper.R:120:48:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L120) *style:* **Variable or function name should be snake_case.**
```r
                           anchorGenes = NULL, excludeGenes = NULL,
                                               ^~~~~~~~~~~~
```
[R/assign.wrapper.R:121:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L121) *style:* **Variable or function name should be snake_case.**
```r
                           n_sigGene = NA, adaptive_B = TRUE,
                           ^~~~~~~~~
```
[R/assign.wrapper.R:121:44:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L121) *style:* **Variable or function name should be snake_case.**
```r
                           n_sigGene = NA, adaptive_B = TRUE,
                                           ^~~~~~~~~~
```
[R/assign.wrapper.R:122:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L122) *style:* **Variable or function name should be snake_case.**
```r
                           adaptive_S = FALSE, mixture_beta = TRUE, outputDir,
                           ^~~~~~~~~~
```
[R/assign.wrapper.R:122:69:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L122) *style:* **Variable or function name should be snake_case.**
```r
                           adaptive_S = FALSE, mixture_beta = TRUE, outputDir,
                                                                    ^~~~~~~~~
```
[R/assign.wrapper.R:124:57:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L124) *style:* **Variable or function name should be snake_case.**
```r
                           iter = 2000, burn_in = 1000, sigma_sZero = 0.01,
                                                        ^~~~~~~~~~~
```
[R/assign.wrapper.R:125:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L125) *style:* **Variable or function name should be snake_case.**
```r
                           sigma_sNonZero = 1, S_zeroPrior=FALSE, pctUp=0.5,
                           ^~~~~~~~~~~~~~
```
[R/assign.wrapper.R:125:48:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L125) *style:* **Variable or function name should be snake_case.**
```r
                           sigma_sNonZero = 1, S_zeroPrior=FALSE, pctUp=0.5,
                                               ^~~~~~~~~~~
```
[R/assign.wrapper.R:125:67:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L125) *style:* **Variable or function name should be snake_case.**
```r
                           sigma_sNonZero = 1, S_zeroPrior=FALSE, pctUp=0.5,
                                                                  ^~~~~
```
[R/assign.wrapper.R:127:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L127) *style:* **Variable or function name should be snake_case.**
```r
                           outputSignature_convergence = FALSE, ECM = FALSE,
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:127:65:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L127) *style:* **Variable or function name should be snake_case.**
```r
                           outputSignature_convergence = FALSE, ECM = FALSE,
                                                                ^~~
```
[R/assign.wrapper.R:128:49:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L128) *style:* **Variable or function name should be snake_case.**
```r
                           progress_bar = TRUE, override_S_matrix = NULL){
                                                ^~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:130:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L130) *style:* **Variable or function name should be snake_case.**
```r
    pathName <- names(trainingLabel)[-1]
    ^~~~~~~~
```
[R/assign.wrapper.R:132:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L132) *style:* **Variable or function name should be snake_case.**
```r
    pathName <- names(geneList)
    ^~~~~~~~
```
[R/assign.wrapper.R:134:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L134) *style:* **Variable or function name should be snake_case.**
```r
  processed.data <- assign.preprocess(trainingData, testData, anchorGenes,
  ^~~~~~~~~~~~~~
```
[R/assign.wrapper.R:142:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L142) *style:* **Variable or function name should be snake_case.**
```r
    mcmc.chain.trainingData <- assign.mcmc(Y = processed.data$trainingData_sub,
    ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:155:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L155) *style:* **Variable or function name should be snake_case.**
```r
    mcmc.pos.mean.trainingData <- assign.summary(test = mcmc.chain.trainingData,
    ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:165:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L165) *style:* **Variable or function name should be snake_case.**
```r
    Smat <- override_S_matrix
    ^~~~
```
[R/assign.wrapper.R:168:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L168) *style:* **Variable or function name should be snake_case.**
```r
    Smat <- processed.data$S_matrix
    ^~~~
```
[R/assign.wrapper.R:171:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L171) *style:* **Variable or function name should be snake_case.**
```r
  mcmc.chain.testData <- assign.mcmc(Y = processed.data$testData_sub,
  ^~~~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:183:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L183) *style:* **Variable or function name should be snake_case.**
```r
  mcmc.pos.mean.testData <- assign.summary(test = mcmc.chain.testData,
  ^~~~~~~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:209:29:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L209) *style:* **Put spaces around all infix operators.**
```r
  param <- data.frame(ASSIGN='ASSIGN parameters',
                           ~^~
```
[R/assign.wrapper.R:209:30:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L209) *style:* **Only use double-quotes.**
```r
  param <- data.frame(ASSIGN='ASSIGN parameters',
                             ^~~~~~~~~~~~~~~~~~~
```
[R/assign.wrapper.R:210:30:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L210) *style:* **Put spaces around all infix operators.**
```r
                      version=as.character(utils::packageVersion("ASSIGN")),
                            ~^~
```
[R/assign.wrapper.R:211:32:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L211) *style:* **Put spaces around all infix operators.**
```r
                      n_sigGene=n_sigGene,
                              ~^~
```
[R/assign.wrapper.R:212:33:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L212) *style:* **Put spaces around all infix operators.**
```r
                      adaptive_B=adaptive_B,
                               ~^~
```
[R/assign.wrapper.R:213:33:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L213) *style:* **Put spaces around all infix operators.**
```r
                      adaptive_S=adaptive_S,
                               ~^~
```
[R/assign.wrapper.R:214:35:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L214) *style:* **Put spaces around all infix operators.**
```r
                      mixture_beta=mixture_beta,
                                 ~^~
```
[R/assign.wrapper.R:215:29:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L215) *style:* **Put spaces around all infix operators.**
```r
                      p_beta=p_beta,
                           ~^~
```
[R/assign.wrapper.R:216:29:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L216) *style:* **Put spaces around all infix operators.**
```r
                      theta0=theta0,
                           ~^~
```
[R/assign.wrapper.R:217:29:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L217) *style:* **Put spaces around all infix operators.**
```r
                      theta1=theta1,
                           ~^~
```
[R/assign.wrapper.R:218:27:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L218) *style:* **Put spaces around all infix operators.**
```r
                      iter=iter,
                         ~^~
```
[R/assign.wrapper.R:219:30:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L219) *style:* **Put spaces around all infix operators.**
```r
                      burn_in=burn_in,
                            ~^~
```
[R/assign.wrapper.R:220:34:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L220) *style:* **Put spaces around all infix operators.**
```r
                      sigma_sZero=sigma_sZero,
                                ~^~
```
[R/assign.wrapper.R:221:37:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L221) *style:* **Put spaces around all infix operators.**
```r
                      sigma_sNonZero=sigma_sNonZero,
                                   ~^~
```
[R/assign.wrapper.R:222:34:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L222) *style:* **Put spaces around all infix operators.**
```r
                      S_zeroPrior=S_zeroPrior,
                                ~^~
```
[R/assign.wrapper.R:223:28:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L223) *style:* **Put spaces around all infix operators.**
```r
                      pctUp=pctUp,
                          ~^~
```
[R/assign.wrapper.R:224:38:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L224) *style:* **Put spaces around all infix operators.**
```r
                      geneselect_iter=geneselect_iter,
                                    ~^~
```
[R/assign.wrapper.R:225:41:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L225) *style:* **Put spaces around all infix operators.**
```r
                      geneselect_burn_in=geneselect_burn_in,
                                       ~^~
```
[R/assign.wrapper.R:226:26:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L226) *style:* **Put spaces around all infix operators.**
```r
                      ECM=ECM,
                        ~^~
```
[R/assign.wrapper.R:227:32:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L227) *style:* **Put spaces around all infix operators.**
```r
                      outputDir=outputDir)
                              ~^~
```
[R/assign.wrapper.R:294:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L294) *style:* **Variable or function name should be snake_case.**
```r
    output.data <- list(processed.data = processed.data,
    ^~~~~~~~~~~
```
[R/assign.wrapper.R:299:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/assign.wrapper.R#L299) *style:* **Variable or function name should be snake_case.**
```r
    output.data <- list(processed.data = processed.data,
    ^~~~~~~~~~~
```
[R/bayes.gene.selection.R:1:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L1) *style:* **Variable or function name should be snake_case.**
```r
bayes.gene.selection <- function(n_sigGene, dat, trainingLabel, iter=500,
^~~~~~~~~~~~~~~~~~~~
```
[R/bayes.gene.selection.R:1:34:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L1) *style:* **Variable or function name should be snake_case.**
```r
bayes.gene.selection <- function(n_sigGene, dat, trainingLabel, iter=500,
                                 ^~~~~~~~~
```
[R/bayes.gene.selection.R:1:50:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L1) *style:* **Variable or function name should be snake_case.**
```r
bayes.gene.selection <- function(n_sigGene, dat, trainingLabel, iter=500,
                                                 ^~~~~~~~~~~~~
```
[R/bayes.gene.selection.R:2:47:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L2) *style:* **Variable or function name should be snake_case.**
```r
                                 burn_in=100, sigmaZero = 0.1, sigmaNonZero = 1,
                                              ^~~~~~~~~
```
[R/bayes.gene.selection.R:2:64:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L2) *style:* **Variable or function name should be snake_case.**
```r
                                 burn_in=100, sigmaZero = 0.1, sigmaNonZero = 1,
                                                               ^~~~~~~~~~~~
```
[R/bayes.gene.selection.R:4:34:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L4) *style:* **Variable or function name should be snake_case.**
```r
                                 pctUp=0.5, anchorGenes=NULL,
                                 ^~~~~
```
[R/bayes.gene.selection.R:4:45:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L4) *style:* **Variable or function name should be snake_case.**
```r
                                 pctUp=0.5, anchorGenes=NULL,
                                            ^~~~~~~~~~~
```
[R/bayes.gene.selection.R:5:34:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L5) *style:* **Variable or function name should be snake_case.**
```r
                                 excludeGenes=NULL, progress_bar = TRUE){
                                 ^~~~~~~~~~~~
```
[R/bayes.gene.selection.R:6:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L6) *style:* **Variable or function name should be snake_case.**
```r
  nPath <- length(trainingLabel) - 1
  ^~~~~
```
[R/bayes.gene.selection.R:7:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L7) *style:* **Variable or function name should be snake_case.**
```r
  bgPosB <- NULL; edPosB <- NULL
  ^~~~~~
```
[R/bayes.gene.selection.R:7:19:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L7) *style:* **Variable or function name should be snake_case.**
```r
  bgPosB <- NULL; edPosB <- NULL
                  ^~~~~~
```
[R/bayes.gene.selection.R:9:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L9) *style:* **Variable or function name should be snake_case.**
```r
    bgPosB <- c(bgPosB, trainingLabel[[1]][[i]][1])
    ^~~~~~
```
[R/bayes.gene.selection.R:10:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L10) *style:* **Variable or function name should be snake_case.**
```r
    edPosB <- c(edPosB, trainingLabel[[1]][[i]][length(trainingLabel[[1]][[i]])])
    ^~~~~~
```
[R/bayes.gene.selection.R:12:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L12) *style:* **Variable or function name should be snake_case.**
```r
  bgPosS <- NULL; edPosS <- NULL
  ^~~~~~
```
[R/bayes.gene.selection.R:12:19:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L12) *style:* **Variable or function name should be snake_case.**
```r
  bgPosS <- NULL; edPosS <- NULL
                  ^~~~~~
```
[R/bayes.gene.selection.R:14:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L14) *style:* **Variable or function name should be snake_case.**
```r
    bgPosS <- c(bgPosS, trainingLabel[[i]][1])
    ^~~~~~
```
[R/bayes.gene.selection.R:15:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L15) *style:* **Variable or function name should be snake_case.**
```r
    edPosS <- c(edPosS, trainingLabel[[i]][length(trainingLabel[[i]])])
    ^~~~~~
```
[R/bayes.gene.selection.R:19:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L19) *style:* **Variable or function name should be snake_case.**
```r
  B_pos <- matrix(0, n, m)
  ^~~~~
```
[R/bayes.gene.selection.R:20:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L20) *style:* **Variable or function name should be snake_case.**
```r
  S_pos <- matrix(0, n, m)
  ^~~~~
```
[R/bayes.gene.selection.R:26:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L26) *style:* **Variable or function name should be snake_case.**
```r
    Y <- dat[, c(bgPosB[j]:edPosB[j], bgPosS[j]:edPosS[j])]
    ^
```
[R/bayes.gene.selection.R:35:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L35) *style:* **Variable or function name should be snake_case.**
```r
    PHI_B <- matrix(nrow = iter, ncol = n)
    ^~~~~
```
[R/bayes.gene.selection.R:36:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L36) *style:* **Variable or function name should be snake_case.**
```r
    PHI_S <- matrix(nrow = iter, ncol = n)
    ^~~~~
```
[R/bayes.gene.selection.R:37:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L37) *style:* **Variable or function name should be snake_case.**
```r
    PHI_Delta <- matrix(nrow = iter, ncol = n)
    ^~~~~~~~~
```
[R/bayes.gene.selection.R:38:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L38) *style:* **Variable or function name should be snake_case.**
```r
    PHI_tau2 <- matrix(nrow = iter, ncol = n)
    ^~~~~~~~
```
[R/bayes.gene.selection.R:53:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L53) *style:* **Variable or function name should be snake_case.**
```r
      s_B_1 <- 1 / (k * PHI_tau2[i - 1, ] + 1 / sigma2 ^ 2)
      ^~~~~
```
[R/bayes.gene.selection.R:54:7:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L54) *style:* **Variable or function name should be snake_case.**
```r
      mu_B_1 <- s_B_1 * (apply(Y, 1, sum) - k2 * PHI_S[i - 1, ]) * PHI_tau2[i - 1, ]
      ^~~~~~
```
[R/bayes.gene.selection.R:81:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/bayes.gene.selection.R#L81) *style:* **Variable or function name should be snake_case.**
```r
  diffGeneList <- vector("list")
  ^~~~~~~~~~~~
```
[R/box.plot.test.R:1:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L1) *style:* **Variable or function name should be snake_case.**
```r
box.plot.test <- function(coef_test, trainingLabel, testLabel, geneList=NULL){
^~~~~~~~~~~~~
```
[R/box.plot.test.R:1:38:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L1) *style:* **Variable or function name should be snake_case.**
```r
box.plot.test <- function(coef_test, trainingLabel, testLabel, geneList=NULL){
                                     ^~~~~~~~~~~~~
```
[R/box.plot.test.R:1:53:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L1) *style:* **Variable or function name should be snake_case.**
```r
box.plot.test <- function(coef_test, trainingLabel, testLabel, geneList=NULL){
                                                    ^~~~~~~~~
```
[R/box.plot.test.R:1:64:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L1) *style:* **Variable or function name should be snake_case.**
```r
box.plot.test <- function(coef_test, trainingLabel, testLabel, geneList=NULL){
                                                               ^~~~~~~~
```
[R/box.plot.test.R:3:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L3) *style:* **Variable or function name should be snake_case.**
```r
    nPath <- length(trainingLabel) - 1
    ^~~~~
```
[R/box.plot.test.R:4:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L4) *style:* **Variable or function name should be snake_case.**
```r
    pathName <- names(trainingLabel)[-1]
    ^~~~~~~~
```
[R/box.plot.test.R:6:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L6) *style:* **Variable or function name should be snake_case.**
```r
    nPath <- length(geneList)
    ^~~~~
```
[R/box.plot.test.R:7:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/box.plot.test.R#L7) *style:* **Variable or function name should be snake_case.**
```r
    pathName <- names(geneList)
    ^~~~~~~~
```
[R/ComBat.step2.R:27:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/ComBat.step2.R#L27) *style:* **Variable or function name should be snake_case.**
```r
ComBat.step2 <- function(testData, pcaPlots=FALSE, combat_train=NULL,
^~~~~~~~~~~~
```
[R/ComBat.step2.R:27:26:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/ComBat.step2.R#L27) *style:* **Variable or function name should be snake_case.**
```r
ComBat.step2 <- function(testData, pcaPlots=FALSE, combat_train=NULL,
                         ^~~~~~~~
```
[R/ComBat.step2.R:27:36:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/ComBat.step2.R#L27) *style:* **Variable or function name should be snake_case.**
```r
ComBat.step2 <- function(testData, pcaPlots=FALSE, combat_train=NULL,
                                   ^~~~~~~~
```
[R/data_prep_s1.R:3:26:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L3) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s1 <- function(n_sigGene, trainingData, testData, trainingLabel,
                         ^~~~~~~~~
```
[R/data_prep_s1.R:3:37:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L3) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s1 <- function(n_sigGene, trainingData, testData, trainingLabel,
                                    ^~~~~~~~~~~~
```
[R/data_prep_s1.R:3:51:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L3) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s1 <- function(n_sigGene, trainingData, testData, trainingLabel,
                                                  ^~~~~~~~
```
[R/data_prep_s1.R:3:61:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L3) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s1 <- function(n_sigGene, trainingData, testData, trainingLabel,
                                                            ^~~~~~~~~~~~~
```
[R/data_prep_s1.R:4:26:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L4) *style:* **Variable or function name should be snake_case.**
```r
                         geneList, anchorGenes, excludeGenes, theta0,
                         ^~~~~~~~
```
[R/data_prep_s1.R:4:36:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L4) *style:* **Variable or function name should be snake_case.**
```r
                         geneList, anchorGenes, excludeGenes, theta0,
                                   ^~~~~~~~~~~
```
[R/data_prep_s1.R:4:49:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L4) *style:* **Variable or function name should be snake_case.**
```r
                         geneList, anchorGenes, excludeGenes, theta0,
                                                ^~~~~~~~~~~~
```
[R/data_prep_s1.R:5:34:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L5) *style:* **Variable or function name should be snake_case.**
```r
                         theta1, pctUp = 0.5, iter = 500, burn_in = 100,
                                 ^~~~~
```
[R/data_prep_s1.R:8:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L8) *style:* **Variable or function name should be snake_case.**
```r
    geneSelection <- bayes.gene.selection(n_sigGene, dat = trainingData,
    ^~~~~~~~~~~~~
```
[R/data_prep_s1.R:17:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L17) *style:* **Variable or function name should be snake_case.**
```r
    diffGeneList <- geneSelection$diffGeneList
    ^~~~~~~~~~~~
```
[R/data_prep_s1.R:19:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L19) *style:* **Variable or function name should be snake_case.**
```r
    diffGeneList <- geneList
    ^~~~~~~~~~~~
```
[R/data_prep_s1.R:54:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L54) *style:* **Variable or function name should be snake_case.**
```r
  trainingBaseline_sub <- rowMeans(trainingData[tmp1, unique(unlist(trainingLabel$control))])
  ^~~~~~~~~~~~~~~~~~~~
```
[R/data_prep_s1.R:55:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L55) *style:* **Variable or function name should be snake_case.**
```r
  trainingData_sub <- trainingData[tmp1, ]
  ^~~~~~~~~~~~~~~~
```
[R/data_prep_s1.R:56:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L56) *style:* **Variable or function name should be snake_case.**
```r
  testData_sub <- testData[tmp1, ]
  ^~~~~~~~~~~~
```
[R/data_prep_s1.R:59:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L59) *style:* **Variable or function name should be snake_case.**
```r
    Pi_matrix <- geneSelection$prior_p[tmp1, ]
    ^~~~~~~~~
```
[R/data_prep_s1.R:60:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L60) *style:* **Variable or function name should be snake_case.**
```r
    Pi_matrix <- Pi_matrix * signature$Delta_matrix #??Do we force the non-signatue genes to be 0??
    ^~~~~~~~~
```
[R/data_prep_s1.R:61:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L61) *style:* **Variable or function name should be snake_case.**
```r
    Pi_matrix <- theta0 + Pi_matrix * theta1
    ^~~~~~~~~
```
[R/data_prep_s1.R:63:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L63) *style:* **Variable or function name should be snake_case.**
```r
    Pi_matrix <- signature$Delta_matrix
    ^~~~~~~~~
```
[R/data_prep_s1.R:64:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s1.R#L64) *style:* **Variable or function name should be snake_case.**
```r
    Pi_matrix <- theta0 + Pi_matrix * theta1
    ^~~~~~~~~
```
[R/data_prep_s2.R:2:26:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L2) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s2 <- function(geneList, anchorGenes, testData, theta0, theta1){
                         ^~~~~~~~
```
[R/data_prep_s2.R:2:36:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L2) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s2 <- function(geneList, anchorGenes, testData, theta0, theta1){
                                   ^~~~~~~~~~~
```
[R/data_prep_s2.R:2:49:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L2) *style:* **Variable or function name should be snake_case.**
```r
data_prep_s2 <- function(geneList, anchorGenes, testData, theta0, theta1){
                                                ^~~~~~~~
```
[R/data_prep_s2.R:3:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L3) *style:* **Variable or function name should be snake_case.**
```r
  S <- matrix(0, nrow = nrow(testData), ncol = length(geneList))
  ^
```
[R/data_prep_s2.R:25:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L25) *style:* **Variable or function name should be snake_case.**
```r
  S1 <- S[apply(S, 1, sum) != 0, ]
  ^~
```
[R/data_prep_s2.R:26:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L26) *style:* **Variable or function name should be snake_case.**
```r
  S2 <- stats::runif(length(S1), 0, 1); dim(S2) <- dim(S1)
  ^~
```
[R/data_prep_s2.R:30:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L30) *style:* **Variable or function name should be snake_case.**
```r
  B <- stats::runif(NROW(S1), 0, 1)
  ^
```
[R/data_prep_s2.R:31:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/data_prep_s2.R#L31) *style:* **Variable or function name should be snake_case.**
```r
  Pi_matrix <- as.matrix(ifelse(S1 == 0, theta0, theta1))
  ^~~~~~~~~
```
[R/geneMatch_sub2.R:1:1:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L1) *style:* **Variable or function name should be snake_case.**
```r
geneMatch_sub2 <- function(dat, diffGeneList, trainingLabel){
^~~~~~~~~~~~~~
```
[R/geneMatch_sub2.R:1:33:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L1) *style:* **Variable or function name should be snake_case.**
```r
geneMatch_sub2 <- function(dat, diffGeneList, trainingLabel){
                                ^~~~~~~~~~~~
```
[R/geneMatch_sub2.R:1:47:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L1) *style:* **Variable or function name should be snake_case.**
```r
geneMatch_sub2 <- function(dat, diffGeneList, trainingLabel){
                                              ^~~~~~~~~~~~~
```
[R/geneMatch_sub2.R:2:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L2) *style:* **Variable or function name should be snake_case.**
```r
  bgPosB <- NULL; edPosB <- NULL
  ^~~~~~
```
[R/geneMatch_sub2.R:2:19:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L2) *style:* **Variable or function name should be snake_case.**
```r
  bgPosB <- NULL; edPosB <- NULL
                  ^~~~~~
```
[R/geneMatch_sub2.R:4:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L4) *style:* **Variable or function name should be snake_case.**
```r
    bgPosB <- c(bgPosB, trainingLabel[[1]][[i]][1])
    ^~~~~~
```
[R/geneMatch_sub2.R:5:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L5) *style:* **Variable or function name should be snake_case.**
```r
    edPosB <- c(edPosB, trainingLabel[[1]][[i]][length(trainingLabel[[1]][[i]])])
    ^~~~~~
```
[R/geneMatch_sub2.R:7:3:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L7) *style:* **Variable or function name should be snake_case.**
```r
  bgPosS <- NULL; edPosS <- NULL
  ^~~~~~
```
[R/geneMatch_sub2.R:7:19:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L7) *style:* **Variable or function name should be snake_case.**
```r
  bgPosS <- NULL; edPosS <- NULL
                  ^~~~~~
```
[R/geneMatch_sub2.R:9:5:](https://github.com/compbiomed/ASSIGN/blob/4258d1d54bd19e4079876bc21240f6dbaca8cb1c/R/geneMatch_sub2.R#L9) *style:* **Variable or function name should be snake_case.**
```r
    bgPosS <- c(bgPosS, trainingLabel[[i]][1])
    ^~~~~~
```


Dynamic shapes stay on the environment until we remove them so you should keep the cleanup code you removed lines 123 to 125:
```cpp
for(int i = first_dynamic; i < first_dynamic + last_dynamic; ++i) {
	_env.removeDynamicShape(i);
}
```


Oh yes, especially with higher values of theta, which is fine for the kind of simulations I wanted BH for, i.e more gravitational dynamics on the level of galaxies or globular clusters... My intention was never to use Barnes Huts for simulating, say, the Neptunian system... What I'm looking to do is to test whether I can get anything that even remotely resembles the cosmic web of dark and baryonic matter in terms of structure... Which has me wondering, how would you best create a simple model of dark matter and or dark energy???


VAVO


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no, I don't even know what this would change
since the exact same change also happened in `World/LODTerrain/Modules/Util/HeightmapParticles.tscn` my guess is, that I miss-clicked somewhere in the editor and it automatically changed both values


`static_cast<uint16_t>(. . .)` feels better than C cast


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CollectorUtils.toListWithSize(n)


Rhk


ActorBuilder<? extends TestActorRef<?>>


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Could you change the width to like 25%? And what's #index? Did you place an id on ur element called id="index"?


Wrong javadoc.


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aqui


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Would it be totally retarded to give the gravitational constant a value that is dependent on the distance between two masses?


Shouldn't this set content type now instead of the middleware?


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If two masses are sufficiently far away from each other, g would assume a negative value, and thus the two masses would appear to accelerating away from each other over time


Actually, now that I've got travis back up an running I see a Note from R CMD check about the hexbin package:

```
Namespace in Imports field not imported from: hexbin
  All declared Imports should be used.
```

I think this is because we don't actually use any functions from hexbin directly, only through ggplot2. So we probably need to put at least hexbin in Suggests. We can check that it is installed inside of `mcmc_hex()`. I've got this on a branch and will make a PR soon.


Pretty sure that would fall within the category of liberal hippie dousche borderline astrologyesque modelling


good jobs


@epeli Thank you for giving this repo a star.

Contributions welcome!


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Was the object expiry bug resolved in the pre-edge tpu release?  You said the old version may not get much support, if its not fixed it would be great if you could back port it.


I fixed the issue and committed it to master


As for dark matter, it is just normal matter that don't collide in the simulation, and the softening helps with this property. But dark energy is another story 😅 I'll have to read up on it. Hmmm... I don't know, dark energy is the expansion of space itself (or something along those lines) and not a repulsive force between objects in space. Or have I misunderstood you? 😅 It would certainly categories as that 😂 but who knows, you might be the true solution to this mystery on the track 😉


Deployment failed with the following error:

~~~
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~~~


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~~~
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Skriv in faxling


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Registration pull request created: [JuliaRegistries/General/543](https://github.com/JuliaRegistries/General/pull/543)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

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Hi! This is the friendly automated conda-forge-webservice.

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Файл изменен


- added 'context' class to simplify dandere2x code. Rather than send individual variables to function calls, send all the variables for a cleaner experience


Ahi subí lo que fuimos probando con Lore, un simple proyecto con el archivo que subio del content_main, para probar el registro de usuario


@jgalaz84 , can you address the issue here?


Check out my fork, I ran into the same issue and solved it by simulating a mouse click.


Yes, this is in barycentric coordinates.


Didn't know this one:
```
@six.python_2_unicode_compatible¶
A class decorator that takes a class defining a __str__ method. On Python 3, the decorator does nothing. On Python 2, it aliases the __str__ method to __unicode__ and creates a new __str__ method that returns the result of __unicode__() encoded with UTF-8.
```


I should mention this is just a file I cleaned up in excel to make it easier for a program to read. It still needs to be put in the correct format so that it can be used in the db.


Not closing the file.


It's now automated, at least for my laptop a2474e4327f130c1e6c22ead030b6b2b32b6b3b4

Thank you


Lol, yea, dark energy is indeed the expansion of space itself... Modelling space in JavaScript is probably a few decades if not centuries away, so I was thinking about whether there would be a cheeky way in which you could model quantity, but of course my idea was h00ting stupid as dark energy as far as we can tell is just a function of space, whereas if we modelled it the way I suggested, it would also be a a function of the relative mass of two objects, so if you had a universe of two galaxies where one of them is only half the mass of the other, it would follow that the Universe would be expanding twice as fast in one direction as in the other 🤣 I need to stop thinking out loud, lol.


Nice.


Why remove it?


cleanup code moved outside of this class, see NavigationInterfacer::compute_trajectory


Regarding dark matter, though... Softening is just to prevent this bug in newtonian mechanics where you get absurdly high acceleration values if two masses get too close to each other, no? Dark matter, on the other hand, is this extra mass that we have conjured as otherwise galaxies would fly apart... The stars in the disks are moving too fast for these disks to be stable, so there must be some extra mass holding them in place, and based on the velocity curves of disks that we have peekabooed there should be about four to five times more dark than baryonic matter


Timer-related changes in this commit have broken the zorba keyboard MCU. The timer register now seems to be decrementing at a snowballing rate rather than a constant one.


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Softening doesn't really cover that, or did I miss something? I've come to understand that the most popular dark matter model is the cold dark matter one, and the thinking is that galaxies are at the bottom of these gravity wells created by these massive dark matter halos


It's a thing Godot does (I automatically get changes like this as well sometimes), I assume it could be related to differences on Windows and Linux; it doesn't seem to actually change anything


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Al final lo hice a mano. No fue tan complicado, me salieron anoche y hoy terminé con el rename y mkdir. Creo que quedaron bastante bien.


So what I'm wondering, is whether it would make sense to add a control that lets you add a central mass with 4 - 5 times the mass of the rest of the normal crap in the galaxy? I mean, if you have a uniform halo of dark matter, the barycenter of this halo will be at the center of the galaxy, as in at the bottom of the gravity well, and that is what all the other stuff will be orbiting, no?


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Would that be a reasonable way of factoring in dark matter? And then the user could reduce the amount of dark matter and see how the galaxy will evaporate in its absence, as our theories suggest they should without dark matter?


WTF is that?


why ? i don't understand, what you speak


I probably shouldn't have checked in the "db:3306" in the dockerfile. It might have just been to get it to work when running locally


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sorry, i delete your comment :(


thank you


> I probably shouldn't have checked in the "db:3306" in the dockerfile. It might have just been to get it to work when running locally

Seems to have connected on travis though


@jcmvbkbc  speak -- ```WTF that ?```


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Nevermind, wrong repository.


A few people took part in the computer science competition.

Determine and output the average points of the participants of the Olympiad in the 9th grade, in the 10th grade, in the 11th grade.


Test commit successful


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I see these things, but I don't see how the change is different from before. I feel like this is a likely regression, unless there is an argument for why this time it is different.
```
-			# POSITION_INDEPENDENT_CODE
+			CXX_STANDARD
+			CXX_STANDARD_REQUIRED
+			CXX_EXTENSIONS
+			C_STANDARD
+			C_STANDARD_REQUIRED
+			C_EXTENSIONS
+			POSITION_INDEPENDENT_CODE
```
See, this is just removing that "#".  I think that's likely to break shared-libraries somewhere; if not on every system/compiler, probably one. Unless this time it's different.


`Class<? extends Dimension`?


No point doing so, we only expose Dimension.


Successfully aliased the URL <https://whatcolourhoodieiskevinwearingtodaycom-oyb39ep26.now.sh> to the following aliases.

* https://whatcolourhoodieiskevinwearingtoday.com
* https://whatcolourhoodieiskevinwearingtodaycom.kevincarrogan.now.sh
* https://whatcolourhoodieiskevinwearingtodaycom-git-master.kevincarrogan.now.sh


Actually, this is correct, needs to be `Class<? extends Dimension>`


Just got an email notification from this but it looks like it was commit in 2015. Just doing cleanup or is this a real change to recon-ng?

I ask because there should be no ```data/profiler_sites.json``` file in recon-ng anymore (for a long time) since the Profiler module pulls this data from the https://github.com/webbreacher/whatsmyname/ project directly at module launch.


Successfully aliased the URL <https://wikichronica-hkr0vt5gs.now.sh> to the following aliases.

* https://wiki.chronica.xyz
* https://www.wiki.chronica.xyz
* https://wikichronica.ckipp01.now.sh
* https://wikichronica-git-master.ckipp01.now.sh


i learnt that so well;
first git pull, change the error, git add , git commit , git push


TeamCity Gribble ORM :: Deploy [Build 1.6.168.0](http://build.mikeobrien.net/viewLog.html?buildId=3998&buildTypeId=gribble&guest=1) outcome was **SUCCESS**
Summary: Tests passed: 470, ignored: 2 Build time: 00:01:30


Wait this in the builder. I'm dumb. Yes.


> Why remove it?

People complained about its existance @TheRealPear


Sorry not in the builder.


grtubkz, z, kj. j


Fichero que permite la gestión del conteo de numero de operaciones asi como las ganancias y acumulado de ambas cantidades.


ghn,.k.j m.mlkbn vhk,bgh


Thank you


okay...


Successfully aliased the URL <https://convertmymoney-djz88whf4.now.sh> to the following aliases.

* https://convertmymoney.rogeriofabricio.now.sh
* https://convertmymoney-git-master.rogeriofabricio.now.sh


Softening helps dark matter to clump together more easily, but your right, it's a correction to Newtons Law of Gravity to deal with the singularity.

Your proposition sounds like a fair approximation 😉 Do you know how the distribution of dark matter in the halo is spread out? Is it a sphere with uniform density or is there much more DM at the center of the Galaxy then at the edges?


Successfully aliased the URL <https://hunt-the-good-stuff-hidjtlb1h.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


Hell you are doing nice stuff


Este fichero proporciona la estructura principal a partir de la cual el programa gestiona la información. Contiene algunos ejemplos de trabajo los cuales podremos gestionar y o visualizar así como añadir nuevos, ampliando de esta forma, la ocupación del parking hasta su máxima capacidad de 150 vehículos.


Successfully aliased the URL <https://aireos-rfa1wzs52.now.sh> to the following aliases.

* https://www.aireos.io
* https://aireos.aireos-website2.now.sh
* https://aireos-git-master.aireos-website2.now.sh


please move this in the header as documentation with doxygen style


This `ValueContainer` will contain the `Key`s and values for the registered `DataRegistration`. The provided value container doesn't need to be a `Entity`, `TileEntity`, etc. A custom one is used (if you look at the full diff)


@reek Are you alive ? are you back ? If so, tell us please!!


Successfully aliased the URL <https://hunt-the-good-stuff-ix9essbky.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


This `CompositeValueStore` will contain the `Key`s related to the `DataRegistration`. The store is `CompositeValueStore.Simple` (or `DataManipulator` with the rename)


Successfully aliased the URL <https://hackerprague2019-pr-icuwd6be8.now.sh> to the following aliases.

* https://pr-parking-hp2019.now.sh
* https://hackerprague2019-pr.belaczek.now.sh
* https://hackerprague2019-pr-git-master.belaczek.now.sh


Successfully aliased the URL <https://hunt-the-good-stuff-1s60ol0je.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


Successfully aliased the URL <https://hunt-the-good-stuff-688ynp6oh.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


By default the value will be mutable, but you can use `asMutable` and `asImmutable` to properly convert them. Sadly enough these generics won't work so you can do `mutableOf` or `immutableOf`


Deployment failed with the following error:

~~~
The `version` property inside your now.json file must be a number.
~~~


Successfully aliased the URL <https://convertmymoney-jl0bheal3.now.sh> to the following aliases.

* https://convertmymoney.rogeriofabricio.now.sh
* https://convertmymoney-git-master.rogeriofabricio.now.sh


Successfully aliased the URL <https://hunt-the-good-stuff-dfbnyrc0i.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


コンプライアンス 👍


Now could not deploy this pull request since the `now.json` file does not contain valid JSON.

	Click here to see the contents of `now.json`

    "start": "node index.js"

For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.


Comparison:
`for (var i = 0; i < items.length; i++)` vs. `[].forEach(function() {})` vs. `for (var f in items)`
Quick 'n dirty tests indicate that in Firefox, for..of is fastest, but slowest in Chromium. Not cool.

```
function testFilter() {
	dom.filter.value = 'u2';
	filter();
	doTest();

	dom.filter.value = 'the ';
	filter();
	doTest();

	dom.filter.value = 'conseq';
	filter();
	doTest();

	dom.filter.value = 'the anthology';
	filter();
	doTest();
}

function doTest() {
	var t0, t1;
	console.log('Test string: '+ dom.filter.value);

	t0 = performance.now();
	for (var i = 0; i < 100; i++) filterForEach();
	t1 = performance.now();
	console.log("ForEach took: "+(t1-t0)+"msecs");

	t0 = performance.now();
	for (var i = 0; i < 100; i++) filterFor();
	t1 = performance.now();
	console.log("For_i++ took: "+(t1-t0)+"msecs");

	t0 = performance.now();
	for (var i = 0; i < 100; i++) filter();
	t1 = performance.now();
	console.log("For..of took: "+(t1-t0)+"msecs");
}

function filterFor() {
	var clear = (dom.filter.value == '' ? '' : 'none');
	var items = dom.tree.querySelectorAll('li');
	for (var f = 0; f < items.length; f++) {
		items[f].style.display = clear;
		if (items[f].className.indexOf('open') != -1)
			items[f].className = 'folder'+ (items[f].className.indexOf('dim') != -1 ? ' dim' : '');
	}

	if (clear != '') {
		var term = dom.filter.value.toLowerCase();
		for (var f = 0; f < items.length; f++) {
			var path = items[f].path.substring(items[f].path.lastIndexOf('/') + 1);
			if (path.toLowerCase().indexOf(term) != -1) {
				items[f].style.display = '';

				if (items[f].className.indexOf('folder') != -1) {
					if (path == dom.filter.value) {
						var itemsb = items[f].querySelectorAll('ul > *');
						for (var c = 0; c < itemsb.length; c++)
							itemsb[c].style.display = '';
						items[f].className = 'folder open filtered'+ (items[f].className.indexOf('dim') != -1 ? ' dim' : '');
					} else items[f].className = 'folder filtered'+ (items[f].className.indexOf('dim') != -1 ? ' dim' : '');
				}

				for (var p = items[f].parentNode; p && p !== dom.tree; p = p.parentNode) {
					if (p.className.indexOf('parent') != -1)
						break;
					if (p.style.display != '')
						p.style.display = '';
					if (p.className.indexOf('folder') != -1)
						p.className = 'parent folder open'
							+ (p.className.indexOf('filtered') != -1 ? ' filtered' : '')
							+ (p.className.indexOf('dim') != -1 ? ' dim' : '');
				}
			}
		}
	}

	keyNav(null, 'down');
}

function filterForEach() {
	var clear = (dom.filter.value == '' ? '' : 'none');
	var items = dom.tree.querySelectorAll('li');
	items.forEach(function(f) {
		f.style.display = clear;
		if (f.className.indexOf('open') != -1)
			f.className = 'folder'+ (f.className.indexOf('dim') != -1 ? ' dim' : '');
	});

	if (clear != '') {
		var term = dom.filter.value.toLowerCase();
		items.forEach(function(f) {
			var path = f.path.substring(f.path.lastIndexOf('/') + 1);
			if (path.toLowerCase().indexOf(term) != -1) {
				f.style.display = '';

				if (f.className.indexOf('folder') != -1) {
					if (path == dom.filter.value) {
						f.querySelectorAll('ul > *').forEach(function(f) {
							f.style.display = '';
						});
						f.className = 'folder open filtered'+ (f.className.indexOf('dim') != -1 ? ' dim' : '');
					} else f.className = 'folder filtered'+ (f.className.indexOf('dim') != -1 ? ' dim' : '');
				}

				for (var p = f.parentNode; p && p !== dom.tree; p = p.parentNode) {
					if (p.className.indexOf('parent') != -1)
						break;
					if (p.style.display != '')
						p.style.display = '';
					if (p.className.indexOf('folder') != -1)
						p.className = 'parent folder open'
							+ (p.className.indexOf('filtered') != -1 ? ' filtered' : '')
							+ (p.className.indexOf('dim') != -1 ? ' dim' : '');
				}
			}
		});
	}

	keyNav(null, 'down');
}

function filter() {
	var clear = (dom.filter.value == '' ? '' : 'none');
	var items = dom.tree.querySelectorAll('li');
	for (var f of items) {
		f.style.display = clear;
		if (f.className.indexOf('open') != -1)
			f.className = 'folder'+ (f.className.indexOf('dim') != -1 ? ' dim' : '');
	}

	if (clear != '') {
		var term = dom.filter.value.toLowerCase();
		for (var f of items) {
			var path = f.path.substring(f.path.lastIndexOf('/') + 1);
			if (path.toLowerCase().indexOf(term) != -1) {
				f.style.display = '';

				if (f.className.indexOf('folder') != -1) {
					if (path == dom.filter.value) {
						for (var c of f.querySelectorAll('ul > *'))
							c.style.display = '';
						f.className = 'folder open filtered'+ (f.className.indexOf('dim') != -1 ? ' dim' : '');
					} else f.className = 'folder filtered'+ (f.className.indexOf('dim') != -1 ? ' dim' : '');
				}

				for (var p = f.parentNode; p && p !== dom.tree; p = p.parentNode) {
					if (p.className.indexOf('parent') != -1)
						break;
					if (p.style.display != '')
						p.style.display = '';
					if (p.className.indexOf('folder') != -1)
						p.className = 'parent folder open'
							+ (p.className.indexOf('filtered') != -1 ? ' filtered' : '')
							+ (p.className.indexOf('dim') != -1 ? ' dim' : '');
				}
			}
		}
	}

	keyNav(null, 'down');
}
```


Successfully aliased the URL <https://hunt-the-good-stuff-9xcfxhv4p.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


Successfully aliased the URL <https://hunt-the-good-stuff-dnkz85iwg.now.sh> to the following aliases.

* https://hunt-the-good-stuff.austinbeaufort.now.sh
* https://hunt-the-good-stuff-git-master.austinbeaufort.now.sh


Now could not deploy this pull request since the `now.json` file does not contain valid JSON.

	Click here to see the contents of `now.json`

{"name":"Clone-Smasher-Bots2"}
{
  "builds": [
    { "Clone-Smasher-Bots2": "index.js"}
  ]
}

For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.


This approximation has some similarities with the BH method in that we approximate a lot of masses with a single mass located at their center of mass. If most of the DM's mass is concentrated in the core of the galaxy, this would be a good approximation. If it is on the other hand more every spread out the approximation becomes less accurate.


Successfully aliased the URL <https://next-graphql-starter-70v6fudet.now.sh> to the following aliases.

* https://next-graphql-starter.hmmchase.now.sh
* https://next-graphql-starter-git-master.hmmchase.now.sh


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


`@JuliaRegistrator register()`


Registration pull request created: [JuliaRegistries/General/544](https://github.com/JuliaRegistries/General/pull/544)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.3.3 -m "<description of version>" ceebcc175f351d603978e7f186d7d449532c8353
git push origin v0.3.3
```