[R/ggcorrmat.R:270:5:](https://github.com/IndrajeetPatil/ggstatsplot/blob/d7209530bf8112cf3be2bd288ec25d3e867834ab/R/ggcorrmat.R#L270) *warning:* **local variable ‘corr.method.text’ assigned but may not be used**
```r
    corr.method.text <- "Pearson"
    ^~~~~~~~~~~~~~~~
```
[R/ggcorrmat.R:379:9:](https://github.com/IndrajeetPatil/ggstatsplot/blob/d7209530bf8112cf3be2bd288ec25d3e867834ab/R/ggcorrmat.R#L379) *warning:* **local variable ‘n_summary’ assigned but may not be used**
```r
        n_summary <- numdf_summary(corr_df$n)
        ^~~~~~~~~
```
[R/helpers_gghistostats.R:49:5:](https://github.com/IndrajeetPatil/ggstatsplot/blob/d7209530bf8112cf3be2bd288ec25d3e867834ab/R/helpers_gghistostats.R#L49) *warning:* **local variable ‘label.value’ assigned but may not be used**
```r
    label.value <- x_pos
    ^~~~~~~~~~~
```
[tests/testthat/test_ggcoefstats.R:134:7:](https://github.com/IndrajeetPatil/ggstatsplot/blob/d7209530bf8112cf3be2bd288ec25d3e867834ab/tests/testthat/test_ggcoefstats.R#L134) *style:* **Commented code should be removed.**
```r
    # testthat::expect_equal(tidy_df$std.error, broom_df$std.error, tolerance = 1e-3)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ggcoefstats.R:498:7:](https://github.com/IndrajeetPatil/ggstatsplot/blob/d7209530bf8112cf3be2bd288ec25d3e867834ab/tests/testthat/test_ggcoefstats.R#L498) *style:* **Commented code should be removed.**
```r
    # testthat::expect_equal(broom_df1$p.value, tidy_df1$p.value, tolerance = 0.001)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


- updated/refactored files
- added newest working version of the frontend:
- Line Chart now with dynamic date picker (with dummy data)
- Pie Chart update with real data  (current implementation can certainly be improved)
- Total off/nonOff tweet amount counters are also initialized with real data on window laod
- Tweet Displays are currently just examples requested fom the Twitter API (not from backend yet)
- Minor look changes etc.


Fix upstreamplugin/UpStream#720


Deployment failed with the following error:

~~~
The property `builds` is only allowed on Now 2.0 — please upgrade: https://zeit.co/upgrade
~~~


Successfully aliased the URL <https://dotwatcher-data-uujtyrmpca.now.sh> to the following aliases.

* https://data.dotwatcher.cc
* https://dotwatcher-data.now.sh


Mathjax CDN修正
cdn.mathjax.org has been retired. Check https://www.mathjax.org/cdn-shutting-down/
原cdn已停止工作，改为mathjax官网建议的新cdn (见 https://www.mathjax.org/cdn-shutting-down/)，使用和原来一样的”最新版本“（尽管含有2.7.1，但官网说这种方法一直是最新版本）


my first ci test


Fix upstreamplugin/UpStream#721


Well, for the sake of compatibility, need to remove the player check.


Now the plot save as  cepc4j2becmhchcb001.png if x = 0.01


Successfully aliased the URL <https://oebb-graphql-k7b6nizvi.now.sh> to the following aliases.

* https://oebb-graphql.timhagn.now.sh
* https://oebb-graphql-git-master.timhagn.now.sh


k


For IMs, the equation doesn't include the output (ie. a force IM would have `m * a`), while the equation for a TM does (ie. a force TM: `F = m * a`). Is this OK to manually enforce this, or should there be a separate `mkQuantDef` that implicitly adds the output to the equation? @JacquesCarette


Fix upstreamplugin/UpStream#718


Successfully aliased the URL <https://torralpoll-b91oth1cx.now.sh> to the following aliases.

* https://torralpoll.lucas1004jx.now.sh
* https://torralpoll-git-master.lucas1004jx.now.sh


is (*contHist[3])[movedPiece][to_sq(move)]
+ (*contHist[3])[movedPiece][to_sq(move)] / 5  intended?
This looks kinda strange tbh


<!-- PMABOT:SPACE -->
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Offending files: libraries/classes/ThemeGenerator/Common.php, libraries/classes/ThemeGenerator/GenerateCss.php


use this value  = 0.1065 if result is needed to compare with paper > arXiv:1605.05881


nie działa to z tą ścianą przed małpami.


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @martindurant was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


missed factor 2 before.


also the same case


@krystian3w Nie wiem, ale tam nie widzę potrzeby.


what the hell


update package.json


In case you're confused
https://computergraphics.stackexchange.com/questions/5373/why-is-the-half-vector-not-used-in-diffuse-brdf-fresnel-calculations

Basically what I wrote but more concise and neater


update login and middleware, edit profile


166827553_Issue7318 (Nigusse) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: OK (2472 of 2472 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


Hi,

I am creating a flasky app from scratch and I ran into an issue with this test. I get the following warning:
`Warning: Silently ignoring app.run() because the application
is run from the flask command line executable.  Consider putting app.run() behind an if __name__ == "__main__" guard to silence this warning.
  self._target(*self._args, **self._kwargs)`
And then the test fails.

I then tried running this on your application that I cloned (Flask=0.12.2) and it runs fine.
I checked my Flask version and it is 1.0.2.

I can see that you already ran into something similar here:
<https://github.com/pallets/flask/pull/2781>

I was thinking about how to implement a similar fix from the project above but the app is too different and I don't know how to go about this.

Let me know if you have any ideas on how to fix this for flasky.

Thanks a lot for a great tutorial!


First commit


angular app for front end


Fixes #726


166827553_Issue7318 (Nigusse) - x86_64-MacOS-10.13-clang: OK (2432 of 2432 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


[inst/examples/example_bucketable_list.R:19:12:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/inst/examples/example_bucketable_list.R#L19) *style:* **Variable and function names should be all lowercase.**
```r
html_print(tagList(
           ^~~~~~~
```
[R/bucketable_list.R:31:9:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/bucketable_list.R#L31) *warning:* **no visible global function definition for ‘increment_bucketable_list’**
```r
        increment_bucketable_list()
        ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/bucketable_list.R:36:3:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/bucketable_list.R#L36) *warning:* **no visible global function definition for ‘assert_sortable_options’**
```r
  assert_sortable_options(options)
  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/bucketable_list.R:62:3:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/bucketable_list.R#L62) *warning:* **no visible global function definition for ‘as.sortable_list’**
```r
  as.sortable_list(z)
  ^~~~~~~~~~~~~~~~
```
[R/css.R:59:10:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/css.R#L59) *warning:* **no visible global function definition for ‘css_sortable_list’**
```r
  css <- css_sortable_list()
         ^~~~~~~~~~~~~~~~~
```
[R/css.R:71:10:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/css.R#L71) *warning:* **no visible global function definition for ‘css_sortable_list’**
```r
  css <- css_sortable_list()
         ^~~~~~~~~~~~~~~~~
```
[R/learnr.R:54:1:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/learnr.R#L54) *style:* **Variable and function names should not be longer than 30 characters.**
```r
question_initialize_input.sortable <- function(question, answer_input, ...) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/learnr.R:98:1:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/learnr.R#L98) *style:* **Variable and function names should not be longer than 30 characters.**
```r
question_completed_input.sortable <- function(question, answer_input, ...) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/learnr.R:127:14:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/learnr.R#L127) *warning:* **no visible global function definition for ‘question_is_correct_value’**
```r
      return(question_is_correct_value(answer$is_correct, answer$message))
             ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/learnr.R:131:10:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/learnr.R#L131) *warning:* **no visible global function definition for ‘question_is_correct_value’**
```r
  return(question_is_correct_value(FALSE, NULL))
         ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/parsons.R:28:54:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/parsons.R#L28) *warning:* **no visible global function definition for ‘increment_parsons’**
```r
    selector <- vapply(seq_along(labels), function(i)increment_parsons(), FUN.VALUE = character(1))
                                                     ^~~~~~~~~~~~~~~~~
```
[R/parsons.R:30:3:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/parsons.R#L30) *warning:* **no visible global function definition for ‘assert_sortable_options’**
```r
  assert_sortable_options(options)
  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/sortable_list.R:75:17:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable_list.R#L75) *warning:* **no visible global function definition for ‘increment_sortable_list’**
```r
    selector <- increment_sortable_list()
                ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/sortable_list.R:77:3:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable_list.R#L77) *warning:* **no visible global function definition for ‘assert_sortable_options’**
```r
  assert_sortable_options(options)
  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/sortable_list.R:79:8:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable_list.R#L79) *style:* **Variable and function names should be all lowercase.**
```r
  z <- tagList(
       ^~~~~~~
```
[R/sortable_list.R:88:11:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable_list.R#L88) *warning:* **no visible binding for global variable ‘tags’, Did you mean 'rtags'?**
```r
          tags$div(class = "sortable-list-item", x )
          ^~~~
```
[R/sortable_list.R:101:3:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable_list.R#L101) *warning:* **no visible global function definition for ‘as.sortable_list’**
```r
  as.sortable_list(z)
  ^~~~~~~~~~~~~~~~
```
[R/sortable.R:31:3:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable.R#L31) *warning:* **no visible global function definition for ‘assert_sortable_options’**
```r
  assert_sortable_options(options)
  ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/sortable.R:72:40:](https://github.com/rstudio/sortable/blob/78ce5ebb44dec799fd67ff3809412a369bc1b930/R/sortable.R#L72) *warning:* **no visible binding for global variable ‘sortable_output’**
```r
  htmlwidgets::shinyRenderWidget(expr, sortable_output, env, quoted = TRUE)
                                       ^~~~~~~~~~~~~~~
```


Guess that has been tested with one GPU only...


OK, to zrób podbicie z ładną poetycką nazwą, bo ja się w 50 znakach nie zmieszczę 🤣


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Successfully aliased the URL <https://salted-egg-n88t8vb69.now.sh> to the following aliases.

* https://salted-egg.phoomparin.now.sh
* https://salted-egg-git-master.phoomparin.now.sh


[bot] 自动构建 [auto-dragalia-6bc2ea73.zip](https://circleci.com/gh/NateScarlet/auto-dragalia/369/artifacts/0/home/circleci/project/artifacts/auto-dragalia-6bc2ea73.zip)


Successfully aliased the URL <https://torralpoll-8xqi2qhsk.now.sh> to the following aliases.

* https://torralpoll.lucas1004jx.now.sh
* https://torralpoll-git-master.lucas1004jx.now.sh


I think more proper setup will be
```
return new Docket(DocumentationType.SWAGGER_2)
                .select()
                .apis(RequestHandlerSelectors.any())
                .apis(basePackage("de.adorsys"))
                .paths(PathSelectors.any())
                .build()
                .securitySchemes(Collections.singletonList(
                        new ApiKey(
                                "JWT",
                                SecurityConstants.TOKEN_HEADER,
                                SecurityConstants.TOKEN_HEADER)
                        )
                )
                .securityContexts(Collections.singletonList((
                        SecurityContext.builder()
                                .securityReferences(
                                        Collections.singletonList(SecurityReference.builder()
                                                .reference("JWT")
                                                .scopes(new AuthorizationScope[0])
                                                .build()
                                        )
                                )
                                .build())
                ));
```


Successfully aliased the URL <https://salted-egg-9j2d43fte.now.sh> to the following aliases.

* https://salted-egg.phoomparin.now.sh
* https://salted-egg-git-master.phoomparin.now.sh


As (partially) noted by the FIXME on lines 67-69, I think the current TM definition is quite broken. My new work-in-progress `tmEqn` passes in the same quantity multiple times, which demonstrates a design flaw. I think the definition of a `Theory` should be:

```haskell
data TheoryModel = TM
  { _mk   :: ModelKind
  , _vctx :: [TheoryModel]
  , _spc  :: [SpaceDefn]
  , _dfun :: [QDefinition]
  , _ref  :: [Reference]
  ,  lb   :: ShortName
  ,  ra   :: String
  , _notes :: [Sentence]
  }
```

where `ModelKind` would hold the `QDefinition` (or `RelationConcept`). While the `_vctx :: [TheoryModel]` and `_spc  :: [SpaceDefn]` fields are currently always initialized to be empty (by the constructors), I'm pretty sure that they're to be implemented in the future, so I'll leave them be. My only other uncertainty is `_dfun :: [QDefinition]` - it is always an empty list when the constructors are called in the examples, and I'm not sure what its purpose is, so we might be able to remove it. Does this whole proposal sound good @JacquesCarette?


🔥 Device tests completed (Failed) on TvOS-Beta on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=2789080)(TvOS-Beta): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/xcode11/2781658938e7a71ae6e3beae0b597ec7dc73f73d/2789080/device-tests/jenkins-results/tests/index.html) 🔥

# Test results

230 tests' device not found, 0 tests passed.


update


@viliusgudziunas the problem is in line 50 above, which is the place where a background thread is started with its entry point set to `app.run()`. Unfortunately `app.run()` is currently broken for this usage, so you will need to create a new function that runs the application without calling `app.run()`. What I would do is use the lower level `run_simple()` from the Werkeug package. If you look at the source code for `app.run()` in the Flask project you can see how it is used there.


Ik weet dat deze buttons onderaan de pagina komen te staan, maar dan kan je beter gebruik maken van bottom: 0 i.p.v. de margin-top te veranderen totdat het mooi staat, want dat is nooit voor elke telefoon gelijk.


@khaledhosny Basically it is a length written to the PDF file, so it should be in PostScript points (bp). There are 65781.76sp per bp. I do not know why pdfglyph.c converts this back to TeX points, that seems weird. Anyway XeTeX acts odd too and also writes the width in (TeX) points (pt) to the file... IMO both are bugs, but at least it's consistent.


> -r folder script script folder script is CLI specific and should not be handled in the Runner

Thanks for not giving up :-)

Accepted: It is CLI specific and should be handled in the option parsing section.
I will move it there during the next days.


Build version: __`3.2.0-renovate/tslint-5.x.493`__ :crossed_fingers: [`renovate/tslint-5.x`](https://github.com/streamich/md-mdast/tree/renovate/tslint-5.x) on [*CircleCI*](https://circleci.com/gh/streamich/md-mdast/493) :tada:


I mean it's just conthist 3 * 6/5, you probably wanted to use fraction of conthist 5 (?)


Successfully aliased the URL <https://components-gkvl6t0a9.now.sh> to the following alias.

* https://components-git-master.undataforum.now.sh


Successfully aliased the URL <https://salted-egg-fwmu96wis.now.sh> to the following aliases.

* https://salted-egg.phoomparin.now.sh
* https://salted-egg-git-master.phoomparin.now.sh


Successfully aliased the URL <https://personal-website-6mi0afwxj.now.sh> to the following aliases.

* https://personal-website-frontend.now.sh
* https://personal-website.vistisen.now.sh
* https://personal-website-git-master.vistisen.now.sh


Congratulations


[R/assertions.R:208:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/assertions.R#L208) *style:* **Lines should not be more than 100 characters.**
```r
      stop("2 or more species share the same label under the 'EN_generic_short' or 'Leading' columns of sim$sppEquiv.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:212:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/assertions.R#L212) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/cohorts.R:46:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L46) *style:* **Lines should not be more than 100 characters.**
```r
#' @param treedFirePixelTableSinceLastDisp A data.table with at least 2 columns, \code{pixelIndex} and \code{pixelGroup}.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:67:48:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L67) *style:* **Variable and function names should not be longer than 30 characters.**
```r
                             speciesEcoregion, treedFirePixelTableSinceLastDisp = NULL,
                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:88:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L88) *style:* **Lines should not be more than 100 characters.**
```r
      message(crayon::green("  Regenerating only open pixels (e.g., likely resprouting & serotiny only)"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:89:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L89) *style:* **Lines should not be more than 100 characters.**
```r
    columnsForPG <- c("ecoregionGroup", "speciesCode", "age") # no Biomass because they all have zero
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:90:31:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L90) *style:* **Commas should always have a space after.**
```r
    cd <- newPixelCohortData[,c("pixelIndex", columnsForPG), with = FALSE]
                              ^
```
[R/cohorts.R:118:30:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L118) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    allCohortData <- cohorts[ , .(ecoregionGroup = ecoregionGroup[1],
                             ^
```
[R/cohorts.R:118:31:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L118) *style:* **Commas should never have a space before.**
```r
    allCohortData <- cohorts[ , .(ecoregionGroup = ecoregionGroup[1],
                             ~^
```
[R/cohorts.R:141:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L141) *style:* **Commented code should be removed.**
```r
  # newPixelCohortData[, sumB := sum(B, na.rm = TRUE), by = pixelGroup]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:217:3:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L217) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- speciesEcoregionLatestYear(speciesEcoregion, time)
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:218:3:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L218) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- setkey(specieseco_current[, .(speciesCode, maxANPP, maxB, ecoregionGroup)],
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:223:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L223) *style:* **Lines should not be more than 100 characters.**
```r
  #missingNewPixelCohortData <- newPixelCohortData[!specieseco_current, on = uniqueSpeciesEcoregionDefinition]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:223:4:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L223) *style:* **Commented code should be removed.**
```r
  #missingNewPixelCohortData <- newPixelCohortData[!specieseco_current, on = uniqueSpeciesEcoregionDefinition]
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:224:3:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L224) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- specieseco_current[!is.na(maxB)]
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:225:24:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L225) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current[, maxB_eco := max(maxB), by = ecoregionGroup]
                       ^~~~~~~~
```
[R/cohorts.R:226:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L226) *style:* **Lines should not be more than 100 characters.**
```r
  newPixelCohortData <- specieseco_current[newPixelCohortData, on = uniqueSpeciesEcoregionDefinition]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:232:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L232) *style:* **Commented code should be removed.**
```r
  # set(newPixelCohortData, NULL, "sumB", 0L)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:239:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L239) *style:* **Lines should not be more than 100 characters.**
```r
  set(newPixelCohortData, which(is.na(newPixelCohortData$oldSumB)), "oldSumB", 0)   ## faster than [:=]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:244:26:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L244) *style:* **Variable or function name should be lowerCamelCase.**
```r
    newPixelCohortData[, B := NULL]
                         ^
```
[R/cohorts.R:248:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L248) *style:* **Lines should not be more than 100 characters.**
```r
  set(newPixelCohortData, NULL, "B", asInteger(pmin(newPixelCohortData$maxANPP, newPixelCohortData$B)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:254:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L254) *style:* **Lines should not be more than 100 characters.**
```r
    if (isTRUE(NROW(unique(newPixelCohortData, by = uniqueCohortDefinition)) != NROW(newPixelCohortData)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:259:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L259) *style:* **Commented code should be removed.**
```r
  # cohortData[, sumB := sum(B, na.rm = TRUE), by = "pixelGroup"]  ## recalculate sumB
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:261:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L261) *style:* **Commented code should be removed.**
```r
  #   set(cohortData, NULL, "sumB", asInteger(cohortData[["sumB"]]))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:292:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L292) *style:* **Lines should not be more than 100 characters.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:292:67:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L292) *style:* **Commas should always have a space after.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
                                                                  ^
```
[R/cohorts.R:292:70:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L292) *style:* **Commented code should be removed.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:293:4:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L293) *style:* **Commented code should be removed.**
```r
  #pgsStillInPGMGoneFromCD <- setdiff(unique(pgmVals$pixelGroup), unique(cohortData$pixelGroup))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:295:64:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L295) *style:* **Commas should always have a space after.**
```r
  pgsStillInPGMGoneFromCD <- pgmVals[whPgsStillInPGMGoneFromCD,]
                                                               ^
```
[R/cohorts.R:346:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L346) *style:* **Lines should not be more than 100 characters.**
```r
  # concatenate within rows -- e.g., ecoregionCode_speciesCode_age_biomass or 647_11_Abie_sp_100_2000
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:350:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L350) *style:* **Lines should not be more than 100 characters.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:350:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L350) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
      ^
```
[R/cohorts.R:350:8:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L350) *style:* **Commas should never have a space before.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
      ~^
```
[R/cohorts.R:351:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L351) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c("pixelGroup") := as.integer(maxPixelGroup) + as.integer(factor(uniqueComboByPixelIndex))]
      ^
```
[R/cohorts.R:351:8:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L351) *style:* **Commas should never have a space before.**
```r
  pcd[ , c("pixelGroup") := as.integer(maxPixelGroup) + as.integer(factor(uniqueComboByPixelIndex))]
      ~^
```
[R/cohorts.R:353:38:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L353) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (getOption("LandR.assertions")) { # old algorithm
                                     ^
```
[R/cohorts.R:357:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L357) *style:* **Lines should not be more than 100 characters.**
```r
    pcd[, pixelGroup2 := mapvalues(pixelGroup, from = unique(pixelGroup), to = as.character(seq_along(unique(pixelGroup))))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:363:12:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L363) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[ , c(columns2) := lapply(.SD, function(x) {
           ^
```
[R/cohorts.R:363:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L363) *style:* **Commas should never have a space before.**
```r
    pcdOld[ , c(columns2) := lapply(.SD, function(x) {
           ~^
```
[R/cohorts.R:367:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L367) *style:* **Lines should not be more than 100 characters.**
```r
    # concatenate within rows -- e.g., ecoregionCode_speciesCode_age_biomass or 647_11_Abie_sp_100_2000
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:368:52:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L368) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[, uniqueComboByRow := as.integer(factor( do.call(paste, as.list(.SD)))),
                                                   ^
```
[R/cohorts.R:372:12:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L372) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"),
           ^
```
[R/cohorts.R:372:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L372) *style:* **Commas should never have a space before.**
```r
    pcdOld[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"),
           ~^
```
[R/cohorts.R:374:12:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L374) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[ , c("pixelGroup") := as.integer(maxPixelGroup) +
           ^
```
[R/cohorts.R:374:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L374) *style:* **Commas should never have a space before.**
```r
    pcdOld[ , c("pixelGroup") := as.integer(maxPixelGroup) +
           ~^
```
[R/cohorts.R:379:25:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L379) *style:* **Put spaces around all infix operators.**
```r
    pcdOld[, pixelGroup2:=mapvalues(pixelGroup, from = unique(pixelGroup),
                       ~^~~
```
[R/cohorts.R:424:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L424) *style:* **Variable and function names should not be longer than 30 characters.**
```r
uniqueSpeciesEcoregionDefinition <- c("speciesCode", "ecoregionGroup")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:435:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L435) *style:* **Lines should not be more than 100 characters.**
```r
  message(magenta("Pixels with non-NA cover:, ", cohortData[!is.na(cover), length(unique(pixelIndex))]))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:443:86:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L443) *style:* **Put spaces around all infix operators.**
```r
    pixelsZero <- NROW(cohortData[, all(get(val) == 0), by = "pixelIndex"][get("V1") ==TRUE])
                                                                                ^~~
```
[R/cohorts.R:444:40:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L444) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," == 0): ", format(pixelsZero, big.mark = ",")))
                                       ^
```
[R/cohorts.R:444:44:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L444) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," == 0): ", format(pixelsZero, big.mark = ",")))
                                           ^
```
[R/cohorts.R:445:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L445) *style:* **Lines should not be more than 100 characters.**
```r
    pixelsBiomassNonZero <- NROW(cohortData[, any(get(val) > 0), by = "pixelIndex"][get("V1") ==TRUE])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:445:95:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L445) *style:* **Put spaces around all infix operators.**
```r
    pixelsBiomassNonZero <- NROW(cohortData[, any(get(val) > 0), by = "pixelIndex"][get("V1") ==TRUE])
                                                                                ^~~
```
[R/cohorts.R:446:40:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L446) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," > 0): ", format(pixelsBiomassNonZero, big.mark = ",")))
                                       ^
```
[R/cohorts.R:446:44:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L446) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," > 0): ", format(pixelsBiomassNonZero, big.mark = ",")))
                                           ^
```
[R/cohorts.R:447:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L447) *style:* **Lines should not be more than 100 characters.**
```r
    out <- list(pixelsNA = pixelsNA, pixelsZero = pixelsZero, pixelsBiomassNonZero = pixelsBiomassNonZero)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:508:32:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L508) *style:* **Variable or function name should be lowerCamelCase.**
```r
                               availableERC_by_Sp, theUnwantedPixels,
                               ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:520:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L520) *style:* **Variable or function name should be lowerCamelCase.**
```r
      availableERC_by_Sp <- as.data.table(availableERC_by_Sp)
      ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:544:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L544) *style:* **Commented code should be removed.**
```r
  #   numChar <- max(nchar(availableERC_by_Sp$initialEcoregionCode), na.rm = TRUE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:546:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L546) *style:* **Lines should not be more than 100 characters.**
```r
  #                      initialEcoregionCode := paste0("1_", paddedFloatToChar(as.integer(initialEcoregionCode), numChar))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:550:16:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L550) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if (FALSE) { # This is old section... can be deleted soon (April 10, 2019, Eliot)
               ^
```
[R/cohorts.R:565:8:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L565) *style:* **Commented code should be removed.**
```r
    #  stop("values of 34 and 35 on pixelCohortData and sim$LCC2005 don't match")
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:594:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L594) *style:* **Lines should not be more than 100 characters.**
```r
    out <- out[initialPixels != pixels] # rm pixels which are same as initialPixels --> these are known wrong
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:597:42:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L597) *style:* **Put spaces around all infix operators.**
```r
    out[lcc %in% c(classesToReplace), lcc:=NA]
                                        ~^~~
```
[R/cohorts.R:600:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L600) *style:* **Lines should not be more than 100 characters.**
```r
                               on = c("pixelIndex" = "initialPixels"), nomatch = NA] # join the availableERC_by_Sp which has initialEcoregionCode
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:604:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L604) *style:* **Lines should not be more than 100 characters.**
```r
                               paddedFloatToChar(as.integer(lcc), padL = numCharLCCCodes, padR = 0))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:608:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L608) *style:* **Lines should not be more than 100 characters.**
```r
    out7 <- out5[availableERG2, on = c("speciesCode", "possERC" = "initialEcoregionCode"), nomatch = NA]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:658:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L658) *style:* **Commented code should be removed.**
```r
    # setnames(out3, c("initialPixels", "initialEcoregionCode"), c("pixelIndex", "ecoregionGroup"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:660:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L660) *style:* **Commented code should be removed.**
```r
    # out3 <- unique(out3, by = c("pixelIndex", "ecoregionGroup"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:683:6:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L683) *style:* **Commented code should be removed.**
```r
    #describeCohortData(cohortData)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:692:16:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L692) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[, V1 := NULL]
               ^~
```
[R/cohorts.R:697:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L697) *style:* **Commented code should be removed.**
```r
  # cohortData[speciesCode == "Popu_sp", cover := asInteger(cover / 2)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:699:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L699) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , cover := {
             ^
```
[R/cohorts.R:699:15:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L699) *style:* **Commas should never have a space before.**
```r
  cohortData[ , cover := {
             ~^
```
[R/cohorts.R:711:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L711) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , B := mean(totalBiomass) * cover / 100, by = "pixelIndex"]
             ^
```
[R/cohorts.R:711:15:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L711) *style:* **Commas should never have a space before.**
```r
  cohortData[ , B := mean(totalBiomass) * cover / 100, by = "pixelIndex"]
             ~^
```
[R/cohorts.R:711:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L711) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[ , B := mean(totalBiomass) * cover / 100, by = "pixelIndex"]
                ^
```
[R/cohorts.R:713:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L713) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , B := ceiling(B / pixelGroupBiomassClass) * pixelGroupBiomassClass]
             ^
```
[R/cohorts.R:713:15:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L713) *style:* **Commas should never have a space before.**
```r
  cohortData[ , B := ceiling(B / pixelGroupBiomassClass) * pixelGroupBiomassClass]
             ~^
```
[R/cohorts.R:713:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L713) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[ , B := ceiling(B / pixelGroupBiomassClass) * pixelGroupBiomassClass]
                ^
```
[R/cohorts.R:715:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L715) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  cohortData[ , totalBiomass := asInteger(totalBiomass)]
             ^
```
[R/cohorts.R:715:15:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L715) *style:* **Commas should never have a space before.**
```r
  cohortData[ , totalBiomass := asInteger(totalBiomass)]
             ~^
```
[R/cohorts.R:817:36:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L817) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[cover > 0 & age == 0, B := 0L]
                                   ^
```
[R/cohorts.R:823:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L823) *style:* **Commented code should be removed.**
```r
  # cohortData[ , coverProp := (cover/100 * (NROW(cohortData) - 1) + 0.5) / NROW(cohortData)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:835:22:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L835) *style:* **Variable or function name should be lowerCamelCase.**
```r
subsetDT <- function(DT, by, doSubset = TRUE) {
                     ^~
```
[R/cohorts.R:840:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L840) *style:* **Lines should not be more than 100 characters.**
```r
              "using maximum of ", sam, " samples per combination of ecoregionGroup and speciesCode. ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:845:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L845) *style:* **Variable or function name should be lowerCamelCase.**
```r
      DT <- DT[a$lineNum]
      ^~
```
[R/cohorts.R:988:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/cohorts.R#L988) *style:* **Lines should not be more than 100 characters.**
```r
    test2 <- sum(unique(pixelCohortData[, .(pixelGroup, noPixels)])$noPixels) != sum(!is.na(pixelGroupMap[]) & pixelGroupMap[] != 0)  ## 0's have no cohorts.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:37:4:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L37) *style:* **Commented code should be removed.**
```r
  #ecoregionMapInStudy <- raster::intersect(ecoregionMapFull, fixErrors(aggregate(studyArea)))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:54:3:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L54) *style:* **Variable or function name should be lowerCamelCase.**
```r
  NAs <- rtmNAs | rstEcoregionNAs
  ^~~
```
[R/ecoregionProducer.R:71:4:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L71) *style:* **Commented code should be removed.**
```r
  #ecoregionFactorValues <- na.omit(unique(rstEcoregion[]))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:73:4:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L73) *style:* **Commented code should be removed.**
```r
  #ecoregionTable <- raster::levels(rstEcoregion)[[1]]
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:81:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L81) *style:* **Lines should not be more than 100 characters.**
```r
    # rstEcoregion[] <- plyr::mapvalues(rstEcoregion[], from = ecoregionTable$ecoregion, to = ecoregionTable$mapcode)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:81:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L81) *style:* **Commented code should be removed.**
```r
    # rstEcoregion[] <- plyr::mapvalues(rstEcoregion[], from = ecoregionTable$ecoregion, to = ecoregionTable$mapcode)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:96:37:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/ecoregionProducer.R#L96) *style:* **Commas should always have a space after.**
```r
  ecoregionTable <- ecoregionTable[,.(active = "yes", mapcode, ecoregion)]
                                    ^
```
[R/LANDIS-II-tables.R:76:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L76) *style:* **Lines should not be more than 100 characters.**
```r
    sppEquiv <- data.table(utils::data("sppEquivalencies_CA", package = "LandR", envir = environment()))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:84:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L84) *style:* **Lines should not be more than 100 characters.**
```r
  speciesTable <- speciesTable[species %in% equivalentName(sppNameVector, sppEquiv, "LANDIS_traits", multi = TRUE) &
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:101:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L101) *style:* **Lines should not be more than 100 characters.**
```r
#' (\url{https://raw.githubusercontent.com/dcyr/LANDIS-II_IA_generalUseFiles/master/speciesTraits.csv}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:105:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L105) *style:* **Lines should not be more than 100 characters.**
```r
#' @param species a \code{data.table} that has species traits such as longevity, shade tolerance, etc.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:122:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L122) *style:* **Lines should not be more than 100 characters.**
```r
    sppEquiv <- data.table(utils::data("sppEquivalencies_CA", package = "LandR", envir = environment()))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:144:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L144) *style:* **Lines should not be more than 100 characters.**
```r
  speciesTableShort[species == "PSEU.MEN", longevity := 525] ## only in MC area, corresponding to var. glauca
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:153:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L153) *style:* **Lines should not be more than 100 characters.**
```r
  speciesTableShort <- speciesTableShort[species %in% equivalentName(sppNameVector, sppEquiv, "LANDIS_traits", multi = TRUE)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:170:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L170) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/biomass-succession_test.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:190:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L190) *style:* **Commented code should be removed.**
```r
  maxcol <- 13 #max(count.fields(file.path(dPath, "species.txt"), sep = ""))
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:211:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L211) *style:* **Only use double-quotes.**
```r
  species[, ':='(seeddistance_eff = gsub(",", "", seeddistance_eff),
            ^~~~
```
[R/LANDIS-II-tables.R:211:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L211) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(seeddistance_eff = gsub(",", "", seeddistance_eff),
                ^
```
[R/LANDIS-II-tables.R:224:18:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L224) *style:* **Only use double-quotes.**
```r
  speciesAddon[, ':='(leaflongevity = as.numeric(leaflongevity),
                 ^~~~
```
[R/LANDIS-II-tables.R:224:22:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L224) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesAddon[, ':='(leaflongevity = as.numeric(leaflongevity),
                     ^
```
[R/LANDIS-II-tables.R:236:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L236) *style:* **Only use double-quotes.**
```r
  species[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
            ^~~~
```
[R/LANDIS-II-tables.R:236:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L236) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                ^
```
[R/LANDIS-II-tables.R:240:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L240) *style:* **Only use double-quotes.**
```r
  species[, ':='(species1 = NULL, species2 = NULL)]
            ^~~~
```
[R/LANDIS-II-tables.R:240:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L240) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(species1 = NULL, species2 = NULL)]
                ^
```
[R/LANDIS-II-tables.R:268:39:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L268) *style:* **Commas should always have a space after.**
```r
  mainInput <- mainInput[col1 != ">>",]
                                      ^
```
[R/LANDIS-II-tables.R:278:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L278) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/ecoregion.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:295:16:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L295) *style:* **Commented code should be removed.**
```r
  maxcol <- 5 #max(count.fields(file.path(dPath, "ecoregions.txt"), sep = ""))
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:311:47:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L311) *style:* **Commas should always have a space after.**
```r
  ecoregion <- ecoregion[col1 != "LandisData",]
                                              ^
```
[R/LANDIS-II-tables.R:312:39:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L312) *style:* **Commas should always have a space after.**
```r
  ecoregion <- ecoregion[col1 != ">>",]
                                      ^
```
[R/LANDIS-II-tables.R:324:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L324) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/biomass-succession-dynamic-inputs_test.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:356:61:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L356) *style:* **Commas should always have a space after.**
```r
  speciesEcoregion <- speciesEcoregion[col1 != "LandisData",]
                                                            ^
```
[R/LANDIS-II-tables.R:357:53:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L357) *style:* **Commas should always have a space after.**
```r
  speciesEcoregion <- speciesEcoregion[col1 != ">>",]
                                                    ^
```
[R/LANDIS-II-tables.R:368:22:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L368) *style:* **Only use double-quotes.**
```r
  speciesEcoregion[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                     ^~~~
```
[R/LANDIS-II-tables.R:368:26:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L368) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesEcoregion[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                         ^
```
[R/LANDIS-II-tables.R:371:22:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L371) *style:* **Only use double-quotes.**
```r
  speciesEcoregion[, ':='(species1 = NULL, species2 = NULL)]
                     ^~~~
```
[R/LANDIS-II-tables.R:371:26:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/LANDIS-II-tables.R#L371) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesEcoregion[, ':='(species1 = NULL, species2 = NULL)]
                         ^
```
[R/maps.R:22:29:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L22) *style:* **Variable or function name should be lowerCamelCase.**
```r
defineFlammable <- function(LandCoverClassifiedMap = NULL,
                            ^~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:129:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L129) *style:* **Variable or function name should be lowerCamelCase.**
```r
    MixedRas <- speciesStack[[1]]
    ^~~~~~~~
```
[R/maps.R:133:18:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L133) *style:* **Variable or function name should be lowerCamelCase.**
```r
    speciesStack$Mixed <- MixedRas
                 ^~~~~
```
[R/maps.R:177:25:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L177) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (isTRUE(unitTest)) { # slower -- older, but simpler Eliot June 5, 2019
                        ^
```
[R/maps.R:178:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L178) *style:* **Lines should not be more than 100 characters.**
```r
    # 1. Find length of each pixelGroup -- don't include pixelGroups in "by" that have only 1 cohort: N = 1
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:181:16:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L181) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pgd1 <- cd[ , list(N = .N), by = "pixelGroup"]
               ^
```
[R/maps.R:181:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L181) *style:* **Commas should never have a space before.**
```r
    pgd1 <- cd[ , list(N = .N), by = "pixelGroup"]
               ~^
```
[R/maps.R:187:61:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L187) *style:* **Put spaces around all infix operators.**
```r
    set(pgd1, NULL, "speciesProportion", pgd1$speciesGroupB /pgd1$totalB)
                                                            ^~
```
[R/maps.R:199:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L199) *style:* **Commented code should be removed.**
```r
  # setorderv(cohortdata, "pixelGroup")
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:200:32:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L200) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pixelGroupData <- cohortdata[ , list(N = .N), by = "pixelGroup"]
                               ^
```
[R/maps.R:200:33:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L200) *style:* **Commas should never have a space before.**
```r
  pixelGroupData <- cohortdata[ , list(N = .N), by = "pixelGroup"]
                               ~^
```
[R/maps.R:202:3:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L202) *style:* **Variable or function name should be lowerCamelCase.**
```r
  N <- rep.int(pixelGroupData$N, pixelGroupData$N)
  ^
```
[R/maps.R:211:3:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L211) *style:* **Variable or function name should be lowerCamelCase.**
```r
  GT1 <- (b > 1)
  ^~~
```
[R/maps.R:214:86:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L214) *style:* **Put spaces around all infix operators.**
```r
    pixelGroupData[[1]] <- cohortdata[GT1, .(speciesProportion = sum(B, na.rm = TRUE)/totalB[1]),
                                                                                ~^~
```
[R/maps.R:218:73:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L218) *style:* **Put spaces around all infix operators.**
```r
    set(cohortdata, which(!GT1), "speciesProportion", cohortdata$B[!GT1]/cohortdata$totalB[!GT1])
                                                                       ~^~
```
[R/maps.R:219:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L219) *style:* **Lines should not be more than 100 characters.**
```r
    pixelGroupData[[NROW(pixelGroupData) + 1]] <- cohortdata[!GT1, c("pixelGroup", "speciesCode", "speciesProportion")]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:227:25:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L227) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (isTRUE(unitTest)) { # slower -- older, but simpler Eliot June 5, 2019
                        ^
```
[R/maps.R:249:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L249) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (FALSE) { # old algorithm
             ^
```
[R/maps.R:256:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L256) *style:* **Lines should not be more than 100 characters.**
```r
    set(pixelGroupData4, NULL, "speciesProportion", pixelGroupData4$speciesGroupB /pixelGroupData4$totalB)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:256:83:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L256) *style:* **Put spaces around all infix operators.**
```r
    set(pixelGroupData4, NULL, "speciesProportion", pixelGroupData4$speciesGroupB /pixelGroupData4$totalB)
                                                                                ^~
```
[R/maps.R:260:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L260) *style:* **Lines should not be more than 100 characters.**
```r
    all.equal(pixelGroupData4[, .(pixelGroup, speciesCode, totalB)], pixelGroupData[,.(pixelGroup, speciesCode, totalB)])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:260:86:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L260) *style:* **Commas should always have a space after.**
```r
    all.equal(pixelGroupData4[, .(pixelGroup, speciesCode, totalB)], pixelGroupData[,.(pixelGroup, speciesCode, totalB)])
                                                                                ^
```
[R/maps.R:265:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L265) *style:* **Lines should not be more than 100 characters.**
```r
  # 2. sort on pixelGroup and speciesProportion, reverse so that 1st row of each pixelGroup is the largest
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:280:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L280) *style:* **Commented code should be removed.**
```r
  # a2 <- Sys.time()
    ^~~~~~~~~~~~~~~~
```
[R/maps.R:284:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L284) *style:* **Commented code should be removed.**
```r
  # pixelGroupData2[mixed == TRUE, leading := "Mixed"]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:285:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L285) *style:* **Commented code should be removed.**
```r
  # b2 <- Sys.time()
    ^~~~~~~~~~~~~~~~
```
[R/maps.R:439:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L439) *style:* **Lines should not be more than 100 characters.**
```r
  ## select which archives/targetFiles to extract -- because there was "multi" above, need unique here
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:446:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L446) *style:* **Lines should not be more than 100 characters.**
```r
                    archive2 = file.path(dPath, paste0("NFI_MODIS250m_kNN_Species_", kNNnames, "_v0.zip")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:449:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L449) *style:* **Lines should not be more than 100 characters.**
```r
  if (!all(reproducible::basename2(file_path_sans_ext(names(archives))) == file_path_sans_ext(targetFiles)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:456:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L456) *style:* **Lines should not be more than 100 characters.**
```r
    message("This looks like a lot of species; did you mean to pass only a subset of this to sppEquiv?",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:474:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L474) *style:* **Lines should not be more than 100 characters.**
```r
                         prepInputs, quick = TRUE) # don't need to digest all the "targetFile" and "archives"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:476:77:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L476) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  noDataLayers <- sapply(speciesLayers, function(x) if (maxValue(x) < thresh ) FALSE else TRUE)
                                                                            ^
```
[R/maps.R:479:76:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L479) *style:* **Commas should always have a space after.**
```r
    message("removing ", sum(!noDataLayers), " species because they had <",thresh,
                                                                           ^
```
[R/maps.R:481:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L481) *style:* **Lines should not be more than 100 characters.**
```r
            "\n  These species are retained (and could be further culled manually, if desired):\n  ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:503:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L503) *style:* **Commented code should be removed.**
```r
  # layerData <- Cache(sapply, X = speciesLayers, function(x) sum(x[] > 0, na.rm = TRUE))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:505:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L505) *style:* **Commented code should be removed.**
```r
  # ## remove layers that had < thresh pixels with biomass
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:506:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L506) *style:* **Commented code should be removed.**
```r
  # belowThresh <- layerData < thresh
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:508:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L508) *style:* **Commented code should be removed.**
```r
  #   message(names(belowThresh)[belowThresh], " was removed because it had no data")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:509:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L509) *style:* **Commented code should be removed.**
```r
  #   speciesLayers[belowThresh] <- NULL
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:608:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L608) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRastName <- basename(tempfile(fileext = ".tif"))
      ^~~~~~~~~~
```
[R/maps.R:610:9:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L610) *style:* **Variable or function name should be lowerCamelCase.**
```r
        LQCurName <- basename(tempfile(fileext = ".tif"))
        ^~~~~~~~~
```
[R/maps.R:617:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L617) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRastInHQcrs <- projectExtent(lowQualityStack, crs = crs(highQualityStack))
      ^~~~~~~~~~~~~
```
[R/maps.R:630:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L630) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRast <- raster(LQRastName)
      ^~~~~~
```
[R/maps.R:648:9:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L648) *style:* **Variable or function name should be lowerCamelCase.**
```r
        HQRast <- raster(tmpHQName)
        ^~~~~~
```
[R/maps.R:653:9:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L653) *style:* **Variable or function name should be lowerCamelCase.**
```r
        HQRast <- highQualityStack[[SPP]]
        ^~~~~~
```
[R/maps.R:656:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L656) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRast <- lowQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:657:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L657) *style:* **Variable or function name should be lowerCamelCase.**
```r
      HQRast <- highQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:664:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L664) *style:* **Variable or function name should be lowerCamelCase.**
```r
    NAs <- is.na(HQRast[])
    ^~~
```
[R/maps.R:668:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L668) *style:* **Variable or function name should be lowerCamelCase.**
```r
    HQRast <- writeRaster(HQRast, datatype = "INT1U",
    ^~~~~~
```
[R/maps.R:678:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L678) *style:* **Variable or function name should be lowerCamelCase.**
```r
      HQRast <- highQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:682:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L682) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRast <- lowQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:686:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L686) *style:* **Variable or function name should be lowerCamelCase.**
```r
      HQRast <- highQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:718:4:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/maps.R#L718) *style:* **Commented code should be removed.**
```r
  #names(sppMerges) <- equivalentName(names(sppMerges), sppEquiv,  column = sppEquivCol)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/misc.R:23:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/misc.R#L23) *style:* **Lines should not be more than 100 characters.**
```r
#' Essentially a wrapper around \code{round}, rather than \code{truncate}, which is what \code{as.integer}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:47:25:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L47) *style:* **Variable or function name should be lowerCamelCase.**
```r
overlayLCCs <- function(LCCs, forestedList, outputLayer,
                        ^~~~
```
[R/overlayLCCs.R:48:25:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L48) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        NAcondition, NNcondition, remapTable = NULL,
                        ^~~~~~~~~~~
```
[R/overlayLCCs.R:48:38:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L48) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        NAcondition, NNcondition, remapTable = NULL,
                                     ^~~~~~~~~~~
```
[R/overlayLCCs.R:49:43:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L49) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        classesToReplace, availableERC_by_Sp,
                                          ^~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:65:5:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L65) *style:* **Variable or function name should be lowerCamelCase.**
```r
    LCCs <- stack(LCCs)
    ^~~~
```
[R/overlayLCCs.R:81:7:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L81) *style:* **Variable or function name should be lowerCamelCase.**
```r
      availableERC_by_Sp <- data.table(initialEcoregionCode = LCCs[[outputLayer]][])
      ^~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:90:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L90) *style:* **Variable or function name should be lowerCamelCase.**
```r
        dt[, NAs := eval(parse(text = NAcondition)), with = TRUE]
             ^~~
```
[R/overlayLCCs.R:92:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L92) *style:* **Variable or function name should be lowerCamelCase.**
```r
        dt[, NAs := NULL]
             ^~~
```
[R/overlayLCCs.R:96:14:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L96) *style:* **Variable or function name should be lowerCamelCase.**
```r
        dt[, NNcondition := eval(parse(text = NNcondition))]
             ^~~~~~~~~~~
```
[R/overlayLCCs.R:101:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L101) *style:* **Lines should not be more than 100 characters.**
```r
          ## It's possible that there are no pixels with classesToReplace that fulfill the NNcondition
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:105:1:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L105) *style:* **Lines should not be more than 100 characters.**
```r
                                  availableERC_by_Sp = na.omit(dt)[, c("initialEcoregionCode", "pixelIndex")])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:128:13:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L128) *style:* **Only use double-quotes.**
```r
      dt2[, ':='(initialEcoregionCode = newLCC, ecoregionCode = newLCC)]
            ^~~~
```
[R/overlayLCCs.R:128:17:](https://github.com/PredictiveEcology/LandR/blob/c065eaf1dc28aab966aa38a00eeaa093c3402d55/R/overlayLCCs.R#L128) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      dt2[, ':='(initialEcoregionCode = newLCC, ecoregionCode = newLCC)]
                ^
```


oops... I meant to do
 (*contHist[5])[movedPiece][to_sq(move)] / 2


:white_check_mark: All Rules (7 / 7) Passed

      :crown: Good job! this pull request is aligned with your organization's best practices!

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Yeah I figured this out :)
You should probably restart your tests now :)


🔥 Device tests completed (Failed) on iOS on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=2788709)(iOS): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/master/c09dfc0e9ade327eb0b8c9500b56ddd93f35dd33/2788709/device-tests/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary>6 tests failed, 107 tests passed.</summary>

## Failed tests

 * monotouch-test/iOS Unified 64-bits - device/Debug: TimedOut (HE0041: Error while processing device notifications from fff50:32:37:a1:c8:31fff (0x7fedcd2bc390): Failed to communicate with the device. Please ensure the cable is properly connected, and try rebooting the device (error: 0xe8000065 kAMDMuxConnectError))
 * monotouch-test/iOS Unified 64-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): TimedOut (HE0041: Error while processing device notifications from fff50:32:37:a1:c8:31fff (0x7fef29d33e00): Failed to communicate with the device. Please ensure the cable is properly connected, and try rebooting the device (error: 0xe8000065 kAMDMuxConnectError))
 * monotouch-test/iOS Unified 64-bits - device/Debug (interpreter -mscorlib): TimedOut (HE0041: Error while processing device notifications from fff50:32:37:a1:c8:31fff (0x7fae2b4bb900): Failed to communicate with the device. Please ensure the cable is properly connected, and try rebooting the device (error: 0xe8000065 kAMDMuxConnectError))
 * [NUnit] Mono BCL tests group 1/iOS Unified 64-bits - device/AssemblyBuildTarget: SDK framework (debug): TimedOut (HE0041: Error while processing device notifications from fff50:32:37:a1:c8:31fff (0x7faaace2cc00): Failed to communicate with the device. Please ensure the cable is properly connected, and try rebooting the device (error: 0xe8000065 kAMDMuxConnectError))
 * [NUnit] Mono BCL tests group 2/iOS Unified 64-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed (HE0041: Error while processing device notifications from fff50:32:37:a1:c8:31fff (0x7fefacf1f880): Failed to communicate with the device. Please ensure the cable is properly connected, and try rebooting the device (error: 0xe8000065 kAMDMuxConnectError))
 * [NUnit] Mono BCL tests group 2/iOS Unified 64-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed (HE0041: Error while processing device notifications from fff50:32:37:a1:c8:31fff (0x7fba143d83c0): Failed to communicate with the device. Please ensure the cable is properly connected, and try rebooting the device (error: 0xe8000065 kAMDMuxConnectError))
</details>


# Specs execution successful
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### Plans updated

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Project | Plan | Build
---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


ok, i changed this one


Should we already be pointing to 7.3?


Allow smaller patient counts to avoid unnecessary rounding.


166827553_Issue7318 (Nigusse) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-UnitTestsCoverage-Debug: OK (1114 of 1114 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-42.26%25-green.png)


Successfully aliased the URL <https://kult-media-jyiuxi6s5.now.sh> to the following aliases.

* https://kult-media.now.sh
* https://kult-media.thibaudcrespin.now.sh
* https://kult-media-git-master.thibaudcrespin.now.sh


I was lazy- it was late and I thought- who would notice... lol!


This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/add-long-site-description-to-about-page/83818/7


See https://github.com/sindresorhus/refined-github/pull/2157#discussion_r294075286

Solved in https://github.com/sindresorhus/refined-github/pull/2157/commits/1a8b7657fce1b8b78039421884b4d56084663cc4 👍


Successfully aliased the URL <https://website-prog-futuro-n6wl58liv.now.sh> to the following aliases.

* https://www.programadoresdofuturo.org
* https://programadoresdofuturo.org
* https://website-prog-futuro.pdf1.now.sh
* https://website-prog-futuro-git-master.pdf1.now.sh


```diff
- Manifacturer
+ Manufacturer
```
https://www.merriam-webster.com/dictionary/manufacturer


you should initialize it, same below


initialize to nullptr here


Successfully aliased the URL <https://website-prog-futuro-cf2nz8dso.now.sh> to the following aliases.

* https://www.programadoresdofuturo.org
* https://programadoresdofuturo.org
* https://website-prog-futuro.pdf1.now.sh
* https://website-prog-futuro-git-master.pdf1.now.sh


Primeiro commit em teste ao gitHub


@JuliaRegistrator register


Registration pull request created: [JuliaRegistries/General/1498](https://github.com/JuliaRegistries/General/pull/1498)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.14.3 -m "<description of version>" ba3a77028d66fa2724d3215f1b168903359485aa
git push origin v0.14.3
```


>I'm ok with "Page Web".

OK. Could you please proceed since, as told above, I'm not sure what are the strings that should be changed, except of course:

https://github.com/collective/plone.app.locales/blob/15d4704d1c581e00ed7cd094cedadfe23cd4e597https://github.com/collective/plone.app.locales/blob/15d4704d1c581e00ed7cd094cedadfe23cd4e597/plone/app/locales/locales/fr/LC_MESSAGES/plone.po#L4418-L4422


✅ Device tests passed on TvOS on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=2787488)(TvOS): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/master/e45c3ba794e25c4ecb1c076678b733746ca184e4/2787488/device-tests/jenkins-results/tests/index.html) ✅

# Test results

# All 113 tests passed


> Thanks for this! I've been using a local function to accomplish this same effect but not as well-implemented.

～


[cantools-release-0.25 for windows.zip](https://github.com/zhuimengqq/cantools/files/3315130/cantools-release-0.25.for.windows.zip)


Successfully aliased the URL <https://phsenet-ik6fcmbrs.now.sh> to the following aliases.

* https://phse.net
* https://phsenet.setphen1.now.sh
* https://phsenet-git-master.setphen1.now.sh


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/master/776/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/master/776/display/redirect) (on internal Jenkins) failed in stage(s) 'Test run, Test run' 🔥

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/master/776//console)
✅ Packages: [xamarin.ios-12.15.0.239.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/master/c09dfc0e9ade327eb0b8c9500b56ddd93f35dd33/776/package/xamarin.ios-12.15.0.239.pkg) [xamarin.mac-5.15.0.239.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/master/c09dfc0e9ade327eb0b8c9500b56ddd93f35dd33/776/package/xamarin.mac-5.15.0.239.pkg)
✅ [API Diff (from stable)](http://xamarin-storage/jenkins/xamarin-macios/master/c09dfc0e9ade327eb0b8c9500b56ddd93f35dd33/776/jenkins-results/api-diff/index.html)
🔥 [Failed to compare API and create generator diff](https://jenkins.internalx.com/job/macios/job/master/776//console) 🔥
    ** Error: Working directory isn't clean:
    HEAD detached at c09dfc0e
    Untracked files:
    (use "git add <file>..." to include in what will be committed)

    tests/bcl-test/BCL tests group 1.csproj
    tests/bcl-test/BCL tests group 2.csproj
    tests/bcl-test/BCL tests group 3.csproj
    tests/bcl-test/BCL tests group 4.csproj
    tests/bcl-test/BCL tests group 6.csproj
    tests/bcl-test/Mac OS X BCL tests group 1-mac-full.csproj
    tests/bcl-test/Mac OS X BCL tests group 1-mac-modern.csproj
    tests/bcl-test/Mac OS X BCL tests group 2-mac-full.csproj
    tests/bcl-test/Mac OS X BCL tests group 2-mac-modern.csproj
    tests/bcl-test/Mac OS X BCL tests group 3-mac-full.csproj
    tests/bcl-test/Mac OS X BCL tests group 3-mac-modern.csproj
    tests/bcl-test/Mac OS X BCL tests group 4-mac-full.csproj
    tests/bcl-test/Mac OS X BCL tests group 4-mac-modern.csproj
    tests/bcl-test/generated/
    tests/bcl-test/mscorlib-mac-full.csproj
    tests/bcl-test/mscorlib-mac-modern.csproj
    tests/bcl-test/mscorlib.csproj

    nothing added to commit but untracked files present (use "git add" to track)
    Search for `Comparing API & creating generator diff` in the log to view the complete log.
🔥 [Test run failed](http://xamarin-storage/jenkins/xamarin-macios/master/c09dfc0e9ade327eb0b8c9500b56ddd93f35dd33/776/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary>31 tests failed, 140 tests passed.</summary>

## Failed tests

 * Xtro/Mac: Failed (Test run failed.)
 * mscorlib/iOS Unified 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemRuntimeSerializationTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemTransactionsTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemXmlTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemXmlLinqTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemComponentModelDataAnnotationsTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemJsonTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemServiceModelWebTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemIOCompressionTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemDataTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemNetHttpTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemServiceModelTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono CorlibTests/watchOS 32-bits - simulator/Debug: Crashed
 * [NUnit] Mono SystemWebServicesTests/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemDataXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemJsonXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemSecurityXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemLinqXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemXmlXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemRuntimeCompilerServicesUnsafeXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemNumericsXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemCoreXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono MicrosoftCSharpXunit/watchOS 32-bits - simulator/Debug: Crashed
 * [xUnit] Mono SystemNetHttpUnitTestsXunit/watchOS 32-bits - simulator/Debug: Crashed
 * monotouch-test/watchOS 32-bits - simulator/Debug (LinkSdk): Crashed
 * monotouch-test/watchOS 32-bits - simulator/Debug (static registrar): Crashed
 * monotouch-test/watchOS 32-bits - simulator/Release (all optimizations): Crashed
 * monotouch-test/watchOS 32-bits - simulator/Debug (all optimizations): Crashed
 * introspection/watchOS 32-bits - simulator/Debug (watchOS 2.0): Crashed
</details>


Successfully aliased the URL <https://net-6kbos31j6.now.sh> to the following aliases.

* https://louis-andre.net
* https://www.louis-andre.net
* https://net.l-a.now.sh
* https://net-git-master.l-a.now.sh


Successfully aliased the URL <https://admin-client-q12wpmufk.now.sh> to the following aliases.

* https://admin.breatheco.de
* https://admin-client.breathecode.now.sh
* https://admin-client-git-master.breathecode.now.sh


hold on this [ PCI Express ECRC settings control (PCIE_ECRC) [Y/n/?]]
```
PCI support (PCI) [Y/n/?] y
  Support mmconfig PCI config space access (PCI_MMCONFIG) [Y/n/?] y
PCI Express Port Bus support (PCIEPORTBUS) [Y/n/?] y
  PCI Express Hotplug driver (HOTPLUG_PCI_PCIE) [Y/n/?] y
  PCI Express Advanced Error Reporting support (PCIEAER) [Y/n/?] y
    PCI Express error injection support (PCIEAER_INJECT) [M/n/y/?] m
    PCI Express ECRC settings control (PCIE_ECRC) [Y/n/?] y
  PCI Express ASPM control (PCIEASPM) [Y/?] y
    Debug PCI Express ASPM (PCIEASPM_DEBUG) [N/y/?] n
    Default ASPM policy
    > 1. BIOS default (PCIEASPM_DEFAULT)
      2. Powersave (PCIEASPM_POWERSAVE)
      3. Power Supersave (PCIEASPM_POWER_SUPERSAVE) (NEW)
      4. Performance (PCIEASPM_PERFORMANCE)
    choice[1-4?]:
  PCI Express Downstream Port Containment support (PCIE_DPC) [N/y/?] n
  PCI Express Precision Time Measurement support (PCIE_PTM) [N/y/?] (NEW)
Message Signaled Interrupts (MSI and MSI-X) (PCI_MSI) [Y/?] y
```


Successfully aliased the URL <https://oebb-graphql-dm1zxyjdl.now.sh> to the following aliases.

* https://oebb-graphql.timhagn.now.sh
* https://oebb-graphql-git-master.timhagn.now.sh


hướng đối tượng trong java


ZEIT Now cannot deploy this project to production due to following domain related issues:

 * `blog.codersforcauses.org`(for alias `blog.codersforcauses.org`) is not found inside your account. [Add it](https://zeit.co/dashboard/codersforcauses/domains?action=add&domain=blog.codersforcauses.org).


Successfully aliased the URL <https://oebb-graphql-2kho0jbqu.now.sh> to the following aliases.

* https://oebb-graphql.timhagn.now.sh
* https://oebb-graphql-git-master.timhagn.now.sh


Successfully aliased the URL <https://website-prog-futuro-el44j35h4.now.sh> to the following aliases.

* https://www.programadoresdofuturo.org
* https://programadoresdofuturo.org
* https://website-prog-futuro.pdf1.now.sh
* https://website-prog-futuro-git-master.pdf1.now.sh


> Index of Refraction is always > 1.0 (speed of light in vacuum/speed of light in medium), your IoR to F0 function is wrong then

The IoR slider is fucked, it should start at 1.0 and end at about 3.0 (zirconium or some shit more shinier than a diamond).


Hey @tareefk, this was inspired by you. Now we have `use_pipe(export = FALSE)`, which is what you needed the other day.


Successfully aliased the URL <https://front10githubio-1sc3jruup.now.sh> to the following aliases.

* https://www.front10.com
* https://front10githubio.front101.now.sh
* https://front10githubio-git-master.front101.now.sh


Perfect


Maybe add a test for #8461?


Actually disabled a check for arguments, not vars.
Related issue: #8461


Successfully aliased the URL <https://vimcolorsorg-ds0qh8d8a.now.sh> to the following aliases.

* https://vimcolors.org
* https://vimcolorsorg.pablopunk.now.sh
* https://vimcolorsorg-git-master.pablopunk.now.sh