[R/bootstrap.R:27:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#'  prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts",
                                                                      ^~
```
[R/bootstrap.R:35:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L35) *style:* **Trailing whitespace is superfluous.**
```r
bootstrapAUC <- function(SE_scored, annotationColName, signatureColNames,
                                                                         ^
```
[R/bootstrap.R:38:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L38) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:41:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L41) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:51:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L51) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:56:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L56) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:68:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L68) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:73:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L73) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:80:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L80) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:86:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:88:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:90:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L90) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:93:40:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L93) *style:* **Trailing whitespace is superfluous.**
```r
#'  choose_sigs <- subset(TBsignatures,
                                       ^
```
[R/bootstrap.R:101:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L101) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/bootstrap.R:102:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L102) *style:* **Trailing whitespace is superfluous.**
```r
tableAUC <- function(SE_scored, annotationColName, signatureColNames,
                                                                     ^
```
[R/bootstrap.R:110:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L110) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:126:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L126) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:139:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L139) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:141:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L141) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:144:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L144) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:155:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L155) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~
```
[R/bootstrap.R:171:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L171) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:175:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L175) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:177:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L177) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:179:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L179) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:187:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L187) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/bootstrap.R:191:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L191) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:239:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L239) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:247:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L247) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:260:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L260) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:271:36:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L271) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::scale_color_manual("",
                                   ^
```
[R/bootstrap.R:275:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L275) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:359:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L359) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:375:7:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L375) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(any(is.nan(this.conf$UpperTPR))) {
      ^
```
[R/bootstrap.R:390:84:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L390) *style:* **Trailing whitespace is superfluous.**
```r
  if (is.null(name)) name <- paste("ROC plots for Gene Signatures, ", ci.lev * 100,
                                                                                ^
```
[R/bootstrap.R:441:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/bootstrap.R#L441) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/data.R:79:15:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/data.R#L79) *style:* **Trailing whitespace is superfluous.**
```r
#' @references
              ^
```
[R/data.R:84:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/data.R#L84) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/data.R:94:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/data.R#L94) *style:* **Trailing whitespace is superfluous.**
```r
#' diseases. Information on subject infection status can be accessed with
                                                                         ^
```
[R/evaluate.R:172:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/evaluate.R#L172) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:177:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/evaluate.R#L177) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:183:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/evaluate.R#L183) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:192:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/evaluate.R#L192) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/plot.R:67:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L67) *style:* **Trailing whitespace is superfluous.**
```r
#'                                      colData = DataFrame(sample =
                                                                    ^
```
[R/plot.R:78:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L78) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~
```
[R/plot.R:82:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L82) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plot.R:88:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~
```
[R/plot.R:91:62:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L91) *style:* **Trailing whitespace is superfluous.**
```r
                             colList = list(), scale = FALSE,
                                                             ^
```
[R/plot.R:161:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L161) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/plot.R:174:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L174) *style:* **Trailing whitespace is superfluous.**
```r
#' @param inputData an input data object. It should either be of the class
                                                                          ^
```
[R/plot.R:175:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L175) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{SummarizedExperiment} and contain the profiled signature data and
                                                                          ^
```
[R/plot.R:176:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L176) *style:* **Trailing whitespace is superfluous.**
```r
#' annotation data as columns in the \code{colData}, or alternatively be of the
                                                                               ^
```
[R/plot.R:177:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L177) *style:* **Trailing whitespace is superfluous.**
```r
#' classes \code{data.frame} or \code{matrix} and contain only the gene
                                                                       ^
```
[R/plot.R:179:82:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L179) *style:* **Trailing whitespace is superfluous.**
```r
#' @param annotationData a \code{data.frame} or \code{matrix} of annotation data,
                                                                                ^
```
[R/plot.R:180:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L180) *style:* **Trailing whitespace is superfluous.**
```r
#' with one column. Only required if \code{inputData} is a \code{data.frame} or
                                                                               ^
```
[R/plot.R:182:82:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L182) *style:* **Trailing whitespace is superfluous.**
```r
#' @param signatureColNames a \code{vector} of the column names in \code{colData}
                                                                                ^
```
[R/plot.R:183:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L183) *style:* **Trailing whitespace is superfluous.**
```r
#' that contain the signature data. Only required if \code{inputData} is a
                                                                          ^
```
[R/plot.R:185:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L185) *style:* **Trailing whitespace is superfluous.**
```r
#' @param annotationColName a character string naming the column name in the
                                                                            ^
```
[R/plot.R:186:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L186) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{colData} that contains the annotation data to be used in making the
                                                                            ^
```
[R/plot.R:188:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L188) *style:* **Trailing whitespace is superfluous.**
```r
#' @param name a character string giving the title of the boxplot. The default
                                                                              ^
```
[R/plot.R:190:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L190) *style:* **Trailing whitespace is superfluous.**
```r
#' @param scale logical. Setting \code{scale = TRUE} scales the signature data.
                                                                               ^
```
[R/plot.R:192:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L192) *style:* **Trailing whitespace is superfluous.**
```r
#' @param includePoints logical. If \code{TRUE}, points will be included over
                                                                             ^
```
[R/plot.R:194:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L194) *style:* **Trailing whitespace is superfluous.**
```r
#' @param notch logical. Notches are used to compare groups; if the notches of
                                                                              ^
```
[R/plot.R:195:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L195) *style:* **Trailing whitespace is superfluous.**
```r
#' two boxes do not overlap, this suggests that the medians are significantly
                                                                             ^
```
[R/plot.R:196:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L196) *style:* **Trailing whitespace is superfluous.**
```r
#' different. If \code{TRUE}, the boxplot will be notched. The default is
                                                                         ^
```
[R/plot.R:198:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L198) *style:* **Trailing whitespace is superfluous.**
```r
#' @param rotateLabels logical. If \code{TRUE}, the x-axis labels will be
                                                                         ^
```
[R/plot.R:210:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L210) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plot.R:218:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L218) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot.R:221:67:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L221) *style:* **Trailing whitespace is superfluous.**
```r
#'                                    colData = DataFrame(sample =
                                                                  ^
```
[R/plot.R:224:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L224) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot.R:234:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L234) *style:* **Trailing whitespace is superfluous.**
```r
                             annotationColName, name = "Signatures",
                                                                    ^
```
[R/plot.R:235:66:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L235) *style:* **Trailing whitespace is superfluous.**
```r
                             scale = FALSE, includePoints = TRUE,
                                                                 ^
```
[R/plot.R:236:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L236) *style:* **Trailing whitespace is superfluous.**
```r
                             notch = FALSE, rotateLabels = FALSE, nrow = NULL,
                                                                              ^
```
[R/plot.R:249:68:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L249) *style:* **Trailing whitespace is superfluous.**
```r
      SummarizedExperiment::colData(inputData)[, annotationColName,
                                                                   ^
```
[R/plot.R:252:68:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L252) *style:* **Trailing whitespace is superfluous.**
```r
      SummarizedExperiment::colData(inputData)[, signatureColNames,
                                                                   ^
```
[R/plot.R:289:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L289) *style:* **Trailing whitespace is superfluous.**
```r
                               variable.name = "Signature",
                                                           ^
```
[R/plot.R:291:41:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L291) *style:* **Trailing whitespace is superfluous.**
```r
  theplot <- ggplot2::ggplot(boxplotdfm,
                                        ^
```
[R/plot.R:293:53:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L293) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::facet_wrap(~Signature, scales = 'free',
                                                    ^
```
[R/plot.R:295:46:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L295) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::geom_boxplot(outlier.shape = NA,
                                             ^
```
[R/plot.R:315:57:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L315) *style:* **Trailing whitespace is superfluous.**
```r
#' and creates a heatmap based on the expression scores.
                                                        ^
```
[R/plot.R:318:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L318) *style:* **Trailing whitespace is superfluous.**
```r
#' @param inputData a \code{SummarizedExperiment} object containing the profiled
                                                                                ^
```
[R/plot.R:323:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L323) *style:* **Trailing whitespace is superfluous.**
```r
#' @param sigGenes a vector identifying the genes in the signature to use in
                                                                            ^
```
[R/plot.R:326:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L326) *style:* **Trailing whitespace is superfluous.**
```r
#' @param name a character string with the plot title of the heatmap. The
                                                                         ^
```
[R/plot.R:328:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L328) *style:* **Trailing whitespace is superfluous.**
```r
#' @param signatureColNames a vector of the column names in the \code{colData}
                                                                              ^
```
[R/plot.R:330:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L330) *style:* **Trailing whitespace is superfluous.**
```r
#' @param annotationColNames a vector of the column names in the \code{colData}
                                                                               ^
```
[R/plot.R:332:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L332) *style:* **Trailing whitespace is superfluous.**
```r
#' @param scale logical. Setting \code{scale = TRUE} scales the signature data.
                                                                               ^
```
[R/plot.R:334:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L334) *style:* **Trailing whitespace is superfluous.**
```r
#' @param showColumnNames logical. Setting \code{showColumnNames = TRUE} will
                                                                             ^
```
[R/plot.R:335:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L335) *style:* **Trailing whitespace is superfluous.**
```r
#' show the column names (i.e. sample names) on the heatmap. The default is
                                                                           ^
```
[R/plot.R:337:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L337) *style:* **Trailing whitespace is superfluous.**
```r
#' @param showRowNames logical. Setting \code{showColumnNames = TRUE} will
                                                                          ^
```
[R/plot.R:338:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L338) *style:* **Trailing whitespace is superfluous.**
```r
#' show the row names (i.e. signature names) on the heatmap. The default is
                                                                           ^
```
[R/plot.R:355:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L355) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot.R:358:67:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L358) *style:* **Trailing whitespace is superfluous.**
```r
#'                                    colData = DataFrame(sample =
                                                                  ^
```
[R/plot.R:366:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L366) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plot.R:380:53:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L380) *style:* **Trailing whitespace is superfluous.**
```r
                                 "Dark2", "Paired"),
                                                    ^
```
[R/plot.R:381:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L381) *style:* **Trailing whitespace is superfluous.**
```r
                                 choose_color = c("red", "white", "blue"),
                                                                          ^
```
[R/plot.R:386:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L386) *style:* **Trailing whitespace is superfluous.**
```r
                                colData(inputData)[, signatureColNames,
                                                                       ^
```
[R/plot.R:391:56:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L391) *style:* **Trailing whitespace is superfluous.**
```r
      pathwaycols[[i]] <- circlize::colorRamp2(c(t1min,
                                                       ^
```
[R/plot.R:392:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L392) *style:* **Trailing whitespace is superfluous.**
```r
                                                 mean(c(t1min, t1max)),
                                                                       ^
```
[R/plot.R:394:62:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L394) *style:* **Trailing whitespace is superfluous.**
```r
                                               c("darkgreen",
                                                             ^
```
[R/plot.R:395:58:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L395) *style:* **Trailing whitespace is superfluous.**
```r
                                                 "white",
                                                         ^
```
[R/plot.R:404:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L404) *style:* **Trailing whitespace is superfluous.**
```r
                                 colData(inputData)[, annotationColNames,
                                                                         ^
```
[R/plot.R:445:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L445) *style:* **Trailing whitespace is superfluous.**
```r
                                    colData(inputData)[, annotationColNames,
                                                                            ^
```
[R/plot.R:450:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L450) *style:* **Trailing whitespace is superfluous.**
```r
                                    colData(inputData)[, annotationColNames,
                                                                            ^
```
[R/plot.R:458:61:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L458) *style:* **Trailing whitespace is superfluous.**
```r
      height = grid::unit(0.4 * length(c(annotationColNames,
                                                            ^
```
[R/plot.R:459:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L459) *style:* **Trailing whitespace is superfluous.**
```r
                                         signatureColNames)), "cm"),
                                                                    ^
```
[R/plot.R:460:26:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L460) *style:* **Trailing whitespace is superfluous.**
```r
      show_legend = TRUE,
                         ^
```
[R/plot.R:490:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L490) *style:* **Trailing whitespace is superfluous.**
```r
#' @param hues a vector of character strings indicating the R colors available
                                                                              ^
```
[R/plot.R:491:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L491) *style:* **Trailing whitespace is superfluous.**
```r
#' from the \code{colors()} function. These will be used as the base colors for
                                                                               ^
```
[R/plot.R:492:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L492) *style:* **Trailing whitespace is superfluous.**
```r
#' the clustering scheme. Different saturations and values (i.e. darkness)
                                                                          ^
```
[R/plot.R:493:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L493) *style:* **Trailing whitespace is superfluous.**
```r
#' will be generated for each hue. Default is \code{c("red", "cyan", "orange",
                                                                              ^
```
[R/plot.R:495:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L495) *style:* **Trailing whitespace is superfluous.**
```r
#' @param saturation.range a numeric vector of length 2 with values between 0
                                                                             ^
```
[R/plot.R:497:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L497) *style:* **Trailing whitespace is superfluous.**
```r
#' @param value.range a numeric vector of length 2 with values between 0 and 1
                                                                              ^
```
[R/plot.R:499:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L499) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plot.R:502:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L502) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plot.R:504:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L504) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plot.R:521:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L521) *style:* **Trailing whitespace is superfluous.**
```r
  ## for all hues. Likewise, high saturation with high value (i.e. low darkness)
                                                                                ^
```
[R/plot.R:522:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L522) *style:* **Trailing whitespace is superfluous.**
```r
  ## is hard to distinguish. Therefore, saturation and value are set to be
                                                                          ^
```
[R/plot.R:525:65:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/plot.R#L525) *style:* **Trailing whitespace is superfluous.**
```r
  s <- seq(from = saturation.range[1], to = saturation.range[2],
                                                                ^
```
[R/profile.R:5:73:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L5) *style:* **Trailing whitespace is superfluous.**
```r
#' Using some subset of the signatures listed in \code{TBsignatures} and
                                                                        ^
```
[R/profile.R:6:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#' specified scoring algorithms, this function runs gene signature profiling
                                                                            ^
```
[R/profile.R:7:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' on an input gene expression dataset. It allows for scores to be computed for
                                                                               ^
```
[R/profile.R:11:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
#' @param input an input data object of the class \code{SummarizedExperiment},
                                                                              ^
```
[R/profile.R:13:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L13) *style:* **Trailing whitespace is superfluous.**
```r
#' @param useAssay a character string specifying the assay to use for signature
                                                                               ^
```
[R/profile.R:14:83:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
#' profiling when \code{input} is a \code{SummarizedExperiment}. Required only for
                                                                                ^
```
[R/profile.R:15:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L15) *style:* **Trailing whitespace is superfluous.**
```r
#' input data of the class \code{SummarizedExperiment}. If null, the assay
                                                                          ^
```
[R/profile.R:17:85:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#' @param signatures a \code{list} of signatures to run with their associated genes.
                                                                                ^
```
[R/profile.R:18:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
#' This list should be in the same format as \code{TBsignatures}, included in
                                                                             ^
```
[R/profile.R:19:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L19) *style:* **Trailing whitespace is superfluous.**
```r
#' the TBSignatureProfiler package. If \code{signatures = NULL}, the default set
                                                                                ^
```
[R/profile.R:20:68:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L20) *style:* **Trailing whitespace is superfluous.**
```r
#' of signatures \code{TBsignatures} list is used. For details, run
                                                                   ^
```
[R/profile.R:22:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L22) *style:* **Trailing whitespace is superfluous.**
```r
#' @param algorithm a vector of algorithms to run, or character string if only
                                                                              ^
```
[R/profile.R:25:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L25) *style:* **Trailing whitespace is superfluous.**
```r
#' @param combineSigAndAlgorithm logical, not supported if \code{input} is a
                                                                            ^
```
[R/profile.R:26:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L26) *style:* **Trailing whitespace is superfluous.**
```r
#' SummarizedExperiment object (in which case, the default is \code{TRUE}).
                                                                           ^
```
[R/profile.R:27:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#' For a matrix or data frame, if \code{TRUE}, the row names will be in the form
                                                                                ^
```
[R/profile.R:33:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L33) *style:* **Trailing whitespace is superfluous.**
```r
#' ASSIGN results if \code{algorithm} specifies \code{"ASSIGN"}. The default is
                                                                               ^
```
[R/profile.R:35:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L35) *style:* **Trailing whitespace is superfluous.**
```r
#' @param outputFormat a character string specifying the output data format.
                                                                            ^
```
[R/profile.R:36:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L36) *style:* **Trailing whitespace is superfluous.**
```r
#' Possible values are \code{"SummarizedExperiment"}, \code{"matrix"}, or
                                                                         ^
```
[R/profile.R:37:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{"data.frame"}. The default is to return the same type as the
                                                                     ^
```
[R/profile.R:39:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L39) *style:* **Trailing whitespace is superfluous.**
```r
#' @param parallel.sz an integer identifying the number of processors to use
                                                                            ^
```
[R/profile.R:40:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L40) *style:* **Trailing whitespace is superfluous.**
```r
#' when running the calculations in parallel for the GSVA and ssGSEA algorithms.
                                                                                ^
```
[R/profile.R:42:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L42) *style:* **Trailing whitespace is superfluous.**
```r
#' @param ASSIGNiter an integer indicating the number of iterations to use in
                                                                             ^
```
[R/profile.R:44:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L44) *style:* **Trailing whitespace is superfluous.**
```r
#' @param ASSIGNburnin an integer indicating the number of burn-in iterations
                                                                             ^
```
[R/profile.R:45:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L45) *style:* **Trailing whitespace is superfluous.**
```r
#' to use in the MCMC for the ASSIGN algorithm. These iterations are discarded
                                                                              ^
```
[R/profile.R:46:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L46) *style:* **Trailing whitespace is superfluous.**
```r
#' when computing the posterior means of the model parameters. The default is
                                                                             ^
```
[R/profile.R:49:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L49) *style:* **Trailing whitespace is superfluous.**
```r
#' @return A \code{SummarizedExperiment} object, \code{data.frame}, or
                                                                      ^
```
[R/profile.R:50:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L50) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{matrix} of signature profiling results. The returned object will be
                                                                            ^
```
[R/profile.R:51:51:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L51) *style:* **Trailing whitespace is superfluous.**
```r
#' of the format specified in \code{outputFormat}.
                                                  ^
```
[R/profile.R:52:56:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L52) *style:* **Trailing whitespace is superfluous.**
```r
#' If \code{input} is a \code{SummarizedExperiment} and
                                                       ^
```
[R/profile.R:53:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L53) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{outputFormat = "SummarizedExperiment"}, then the output will retain
                                                                            ^
```
[R/profile.R:54:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L54) *style:* **Trailing whitespace is superfluous.**
```r
#' any input information stored in the input colData. In general, if
                                                                    ^
```
[R/profile.R:55:83:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L55) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{outputFormat = "SummarizedExperiment"} then columns in the \code{colData}
                                                                                ^
```
[R/profile.R:56:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L56) *style:* **Trailing whitespace is superfluous.**
```r
#' will include the scores for each desired signature with samples on the rows.
                                                                               ^
```
[R/profile.R:57:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L57) *style:* **Trailing whitespace is superfluous.**
```r
#' If \code{input} is a \code{data.frame} or \code{matrix}, then the returned
                                                                             ^
```
[R/profile.R:58:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L58) *style:* **Trailing whitespace is superfluous.**
```r
#' object will have signatures on the rows and samples on the columns.
                                                                      ^
```
[R/profile.R:59:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L59) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:60:15:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L60) *style:* **Trailing whitespace is superfluous.**
```r
#' @references
              ^
```
[R/profile.R:61:96:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L61) *style:* **Trailing whitespace is superfluous.**
```r
#' Barbie,  D.A., Tamayo, P., Boehm, J.S., Kim, S.Y., Moody,	 S.E., Dunn, I.F., Schinzel, A.C.,
                                                                                ^
```
[R/profile.R:62:90:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L62) *style:* **Trailing whitespace is superfluous.**
```r
#' Sandy, P., Meylan, E., Scholl, C., et al. (2009).  Systematic RNA interference reveals
                                                                                ^
```
[R/profile.R:65:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L65) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:66:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L66) *style:* **Trailing whitespace is superfluous.**
```r
#' Foroutan, M. et al. (2018). Single sample scoring of molecular phenotypes.
                                                                             ^
```
[R/profile.R:67:46:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L67) *style:* **Trailing whitespace is superfluous.**
```r
#' \emph{BMC Bioinformatics}, \bold{19}. doi:
                                             ^
```
[R/profile.R:70:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L70) *style:* **Trailing whitespace is superfluous.**
```r
#' Lee, E. et al. (2008). Inferring pathway activity toward precise disease
                                                                           ^
```
[R/profile.R:71:63:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L71) *style:* **Trailing whitespace is superfluous.**
```r
#' classification. \emph{PLoS Comp Biol}, 4(11):e1000217. doi:
                                                              ^
```
[R/profile.R:74:73:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L74) *style:* **Trailing whitespace is superfluous.**
```r
#' Shen, Y. et al. (2015). ASSIGN: context-specific genomic profiling of
                                                                        ^
```
[R/profile.R:76:19:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L76) *style:* **Trailing whitespace is superfluous.**
```r
#' 1745-1753. doi:
                  ^
```
[R/profile.R:78:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L78) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:79:82:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L79) *style:* **Trailing whitespace is superfluous.**
```r
#' Subramanian, A. et al. (2005). Gene set enrichment analysis: A knowledge-based
                                                                                ^
```
[R/profile.R:83:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L83) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:84:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L84) *style:* **Trailing whitespace is superfluous.**
```r
#' Tomfohr, J. et al. (2005). Pathway level analysis of gene expression using
                                                                             ^
```
[R/profile.R:88:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#' @source Profiling for the Z-Score, PLAGE, GSVA, ssGSEA algorithms are all
                                                                            ^
```
[R/profile.R:97:83:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L97) *style:* **Trailing whitespace is superfluous.**
```r
#'  # Create some toy data to test Zak_RISK_16 signature, using 5 samples with low
                                                                                ^
```
[R/profile.R:106:54:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L106) *style:* **Trailing whitespace is superfluous.**
```r
#'                         signatures = TBsignatures,
                                                     ^
```
[R/profile.R:107:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L107) *style:* **Trailing whitespace is superfluous.**
```r
#'                         algorithm = c("GSVA", "ssGSEA"),
                                                           ^
```
[R/profile.R:111:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L111) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:121:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L121) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/profile.R:124:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L124) *style:* **Trailing whitespace is superfluous.**
```r
                             algorithm = c("GSVA", "ssGSEA", "ASSIGN",
                                                                      ^
```
[R/profile.R:138:4:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L138) *style:* **Trailing whitespace is superfluous.**
```r
  }
   ^
```
[R/profile.R:158:56:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L158) *style:* **Trailing whitespace is superfluous.**
```r
  if (!all(algorithm %in% c("GSVA", "ssGSEA", "ASSIGN",
                                                       ^
```
[R/profile.R:160:68:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L160) *style:* **Trailing whitespace is superfluous.**
```r
    stop("Invalid algorithm. Supported algorithms are GSVA, ssGSEA,
                                                                   ^
```
[R/profile.R:189:52:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L189) *style:* **Trailing whitespace is superfluous.**
```r
    singscore_res <- matrix(ncol = ncol(runindata),
                                                   ^
```
[R/profile.R:195:25:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L195) *style:* **Commas should always have a space after.**
```r
      singscore_res[sig,] <- suppressWarnings(singscore::simpleScore(
                        ^
```
[R/profile.R:196:28:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L196) *style:* **Trailing whitespace is superfluous.**
```r
        rankData = rankDat,
                           ^
```
[R/profile.R:217:56:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L217) *style:* **Trailing whitespace is superfluous.**
```r
        message("Not enough signature genes in ", i, ",
                                                       ^
```
[R/profile.R:261:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L261) *style:* **Trailing whitespace is superfluous.**
```r
    # if combineSigAndAlgorithm TRUE, we can just concatenate the name to the
                                                                             ^
```
[R/profile.R:290:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L290) *style:* **Trailing whitespace is superfluous.**
```r
        rownames(gsvaRes_PLAGE) <- paste("PLAGE", rownames(gsvaRes_PLAGE),
                                                                          ^
```
[R/profile.R:299:68:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L299) *style:* **Trailing whitespace is superfluous.**
```r
        rownames(gsvaRes_Z) <- paste("Zscore", rownames(gsvaRes_Z),
                                                                   ^
```
[R/profile.R:308:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L308) *style:* **Trailing whitespace is superfluous.**
```r
        rownames(singscore_res) <- paste("singscore", rownames(singscore_res),
                                                                              ^
```
[R/profile.R:411:65:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L411) *style:* **Trailing whitespace is superfluous.**
```r
    absent <- subset(names(signatures), !(names(signatures) %in%
                                                                ^
```
[R/profile.R:413:7:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L413) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(length(algorithm) == 1) {
      ^
```
[R/profile.R:415:83:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L415) *style:* **Trailing whitespace is superfluous.**
```r
        paste("No identifiers in the gene sets could be matched to the identifiers
                                                                                ^
```
[R/profile.R:416:66:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L416) *style:* **Trailing whitespace is superfluous.**
```r
          in the expression data for the following signatures: ",
                                                                 ^
```
[R/profile.R:454:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L454) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:457:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L457) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{compareSigs} function allows the input of a data object and conducts
                                                                             ^
```
[R/profile.R:458:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L458) *style:* **Trailing whitespace is superfluous.**
```r
#' profiling on each signature desired, and outputting a heatmap for each
                                                                         ^
```
[R/profile.R:464:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L464) *style:* **Trailing whitespace is superfluous.**
```r
#' from the profiling should be suppressed (including progress bar output).
                                                                           ^
```
[R/profile.R:466:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L466) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:469:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L469) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:471:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L471) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:472:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L472) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/profile.R:473:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L473) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/profile.R:480:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L480) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~
```
[R/profile.R:483:41:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L483) *style:* **Trailing whitespace is superfluous.**
```r
                         annotationData,
                                        ^
```
[R/profile.R:484:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L484) *style:* **Trailing whitespace is superfluous.**
```r
                         algorithm = c("GSVA", "ssGSEA", "ASSIGN", "PLAGE",
                                                                           ^
```
[R/profile.R:486:49:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L486) *style:* **Trailing whitespace is superfluous.**
```r
                         showColumnNames = TRUE,
                                                ^
```
[R/profile.R:488:46:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L488) *style:* **Trailing whitespace is superfluous.**
```r
                         useAssay = "counts",
                                             ^
```
[R/profile.R:489:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L489) *style:* **Trailing whitespace is superfluous.**
```r
                         colorSets = c("Set1", "Set2", "Set3", "Pastel1",
                                                                         ^
```
[R/profile.R:490:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L490) *style:* **Trailing whitespace is superfluous.**
```r
                                       "Pastel2", "Accent", "Dark2",
                                                                    ^
```
[R/profile.R:494:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L494) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/profile.R:504:4:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L504) *style:* **Trailing whitespace is superfluous.**
```r
  }
   ^
```
[R/profile.R:518:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L518) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/profile.R:521:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L521) *style:* **Trailing whitespace is superfluous.**
```r
      col.names <- subset(names(SummarizedExperiment::colData(scored)),
                                                                       ^
```
[R/profile.R:522:73:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L522) *style:* **Trailing whitespace is superfluous.**
```r
                          !(names(SummarizedExperiment::colData(scored))
                                                                        ^
```
[R/profile.R:525:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L525) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/profile.R:526:36:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/ea7d4796221bbd584f3f41be73b6d1f8143a202f/R/profile.R#L526) *style:* **Trailing whitespace is superfluous.**
```r
    return(signatureHeatmap(scored,
                                   ^
```


awesome! 😄 best wishes!


we will organize wedding ceremony b


@tofik700 can do that


Successfully aliased the URL <https://mogul-l3dlbkt7n.now.sh> to the following aliases:

* https://mogul.mogul.now.sh
* https://mogul-git-master.mogul.now.sh


Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `script` property.
~~~


Successfully aliased the URL <https://petgram-oma9ib59l.now.sh> to the following aliases:

* https://petgram.rojasleon.now.sh
* https://petgram-git-master.rojasleon.now.sh


Note that display is set to flex in nav selector.


nice


fhghgg


authored? committed??


Successfully aliased the URL <https://samstudiosbot-vyewgstpjb.now.sh> to the following alias:

* https://samstudiosbot.now.sh


5折的时候迭代一折结果就运行不了了 你能运行吗 代码问题还是本地电脑问题


Seconded... You are the only person still supporting Python 2.7... everyone else are just running to Python 3 :(


ZEIT Now cannot deploy this project to production due to following domain related issues:

 * `snuggsi.com`(for alias `snuggsi.com`) is not found inside your account. [Add it](https://zeit.co/dashboard/domains?action=add&domain=snuggsi.com).


下载文件没问题。


I am really looking forward to the future and what interesting and exciting things The AUS Digital Dollar brings. This is a great project with a great airdrop that is worth the effort to invest your time in. The price is just right for investing in this awesome AUS Digital Dollar.


Successfully aliased the URL <https://github-issue-finder-bdp83wzcu.now.sh> to the following aliases:

* https://github-issue-finder.ccfp.now.sh
* https://github-issue-finder-git-master.ccfp.now.sh


subtask of #629 and #188


Successfully aliased the URL <https://css-generator-edwvmsxy3.now.sh> to the following aliases:

* https://css-generator.bayraa3033.now.sh
* https://css-generator-git-master.bayraa3033.now.sh


GSHP_desuperheater (yzhou601) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-IntegrationCoverage-Debug: OK (668 of 668 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-68.47%25-green.png)


Состояние фокуса ведь уже было прописано выше на 181 строке.


I think using `equals()` is better.
use `==` to compare strings, in this case, it works but makes confusing.


Successfully aliased the URL <https://samstudiosbot-fabnochaua.now.sh> to the following alias:

* https://samstudiosbot.now.sh


Executing the daily benchmark build, I will reply here when finished:

@nanosoldier `runbenchmarks(ALL, isdaily = true)`


This was a mistake


TeamCity Glyssen / Glyssen pull requests [Build *.*.397.80c11b4bf8deb9dabc6d36b10e29b79454e30a2c](https://build.palaso.org/viewLog.html?buildId=157847&buildTypeId=Glyssen_GlyssenPullRequests2) outcome was **FAILURE**
Summary: Tests failed: 3, passed: 2161, ignored: 18 Build time: 00:08:40
### Failed tests
```
ControlDataIntegrityTests.dll: ControlDataIntegrityTests.CharacterVerseDataTests.DataIntegrity_RequiredFieldsHaveValidFormatAndThereAreNoDuplicateLines: Test(s) failed.   Line with extra space(s): ROM	10	6	God		 righteousness which is of faith (God)	Quotation
  Expected: False
  But was:  True

   at NUnit.Framework.Assert.That(Object actual, IResolveConstraint expression, String message, Object[] args)
   at NUnit.Framework.Assert.IsFalse(Boolean condition, String message)
   at ControlDataIntegrityTests.CharacterVerseDataTests.DataIntegrity_RequiredFieldsHaveValidFormatAndThereAreNoDuplicateLines() in C:\BuildAgent\work\9269096ed6fdb26d\ControlDataIntegrityTests\CharacterVerseDataTests.cs:line 86

GlyssenTests.dll: GlyssenTests.ProjectTests.SetReferenceText_ChangeFromEnglishToFrenchWithOneBlockMismatched_ReferenceTextClearedForAllRelatedBlocks: Test(s) failed.   Expected: True
  But was:  False

   at NUnit.Framework.Assert.That(Object actual, IResolveConstraint expression, String message, Object[] args)
   at NUnit.Framework.Assert.IsTrue(Boolean condition)
   at GlyssenTests.ProjectTests.SetReferenceText_ChangeFromEnglishToFrenchWithOneBlockMismatched_ReferenceTextClearedForAllRelatedBlocks() in C:\BuildAgent\work\9269096ed6fdb26d\GlyssenTests\ProjectTests.cs:line 1156

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_AllSourceBlocksAlignedToReferenceTextWithManualSplitInMiddleOfVerse_TextUnchanged_SplitAppliedAndAllBlocksAligned: Test(s) failed.   String lengths are both 2. Strings differ at index 1.
  Expected: "26"
  But was:  "25"
  ------------^

   at NUnit.Framework.Assert.That(Object actual, IResolveConstraint expression, String message, Object[] args)
   at NUnit.Framework.Assert.AreEqual(Object expected, Object actual)
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_AllSourceBlocksAlignedToReferenceTextWithManualSplitInMiddleOfVerse_TextUnchanged_SplitAppliedAndAllBlocksAligned() in C:\BuildAgent\work\9269096ed6fdb26d\GlyssenTests\BookScriptTests.cs:line 1397

```


crack-refactor (jasondegraw) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


vikash yadav
vikash yadavvikash yadavvikash yadav


crack-refactor (jasondegraw) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (9 of 9 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Commit Inicial


Successfully aliased the URL <https://spacedelta-landing-page-b05tsfjig.now.sh> to the following aliases:

* https://spacedelta-landing-page.niravpatelp129.now.sh
* https://spacedelta-landing-page-git-master.niravpatelp129.now.sh


Oh! It's interesting that you're storing this in state. Do you plan to change this?


@slavaleleka
I guess it will be `blank` ?


Successfully aliased the URL <https://css-generator-8661ctwjp.now.sh> to the following aliases:

* https://css-generator.bayraa3033.now.sh
* https://css-generator-git-master.bayraa3033.now.sh


I don't think we need these `future` stuffs for python3.


as well as the utf-8 coding declaration and maybe the Unicode prefix for string


Collaborator: Review for this commit was created. [Link to review](/ui#review:id=60)


Collaborator: Review for this commit was created. [Link to review](/ui#review:id=61)


ignore saga put action.


@JuliaRegistrator register

Release notes:

Added support for MatrixPlot.


Registration pull request created: [JuliaRegistries/General/2281](https://github.com/JuliaRegistries/General/pull/2281)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v3.1.3 -m "<description of version>" 16000c93bf7ebd70f379f66c21699f1396c8a733
git push origin v3.1.3
```


Collaborator: Review for this commit was created. [Link to review](/ui#review:id=111)


Collaborator: Review for this commit was created. [Link to review](/ui#review:id=112)


Calm down hackers, the tokens are regenerated


GSHP_desuperheater (yzhou601) - Win64-Windows-10-VisualStudio-16: OK (2456 of 2456 tests passed, 2 test warnings)

Messages:\n
 * 1 test had: EIO diffs.
 * 1 test had: ESO small diffs.
 * 1 test had: BND diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


Collaborator: Review for this commit was created. [Link to review](http://tests-a.collabdevteam.net:8080/ui#review:id=134)


Successfully aliased the URL <https://ammobin-d9prnoa2d.now.sh> to the following aliases:

* https://ammobinclient.now.sh
* https://ammobin.flyingmonkeydude.now.sh
* https://ammobin-git-master.flyingmonkeydude.now.sh


New commit - CodeBuild rebuild started


Congrats too! This is a really nice pruning tweak.


Successfully aliased the URL <https://amorris-aeuwbh0vn.now.sh> to the following aliases:

* https://amorris.ca
* https://amorris.mor.now.sh
* https://amorris-git-master.mor.now.sh


e


Successfully aliased the URL <https://albumin-diet-engine-j4ul3qtlg.now.sh> to the following aliases:

* https://albumin-diet-engine.now.sh
* https://albumin-diet-engine.gianlucaparadise.now.sh
* https://albumin-diet-engine-git-master.gianlucaparadise.now.sh


Released 2.0.3


Collaborator: Review for this commit was created. [Link to review](http://tests-a.collabdevteam.net:8080/ui#review:id=211)


Collaborator: Review for this commit was created. [Link to review](http://tests-a.collabdevteam.net:8080/ui#review:id=213)


Collaborator: Review for this commit was created. [Link to review](http://tests-a.collabdevteam.net:8080/ui#review:id=214)


what about checking also for file dimensions  with something like ``` $(file ${MOUNTPOINT}/.DirIcon| grep '48 x x48'``` to make sure that will work for home/eject?


![](https://github.trello.services/images/mini-trello-icon.png) [学习go语言并发之道](https://trello.com/c/sW56xb2B/6-%E5%AD%A6%E4%B9%A0go%E8%AF%AD%E8%A8%80%E5%B9%B6%E5%8F%91%E4%B9%8B%E9%81%93)


> Добавь раздел issues + (тип идея для будущих апдейтов) в генке достаточно много кода с пометокой //TODO, было бы не плохо его реализовать 😋

Okey.


crack-refactor (jasondegraw) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: OK (2488 of 2495 tests passed, 19 test warnings)

Messages:\n
 * 19 tests had: ESO small diffs.
 * 22 tests had: EIO diffs.
 * 19 tests had: Table small diffs.
 * 19 tests had: MTR small diffs.
 * 7 tests had: ESO big diffs.
 * 2 tests had: ERR diffs.
 * 1 test had: Table big diffs.
 * 1 test had: SSZ small diffs.
 * 2 tests had: ZSZ small diffs.

Failures:\n

regression Test Summary
 * Passed: 675
 * Failed: 7

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.72%25-yellow.png)


A lot of editors have this feature so you can see tabs vs spaces, or see more easily how many indentation levels a piece of code is at.


.each always returns the original array, so this sets @items = @merchants


Successfully aliased the URL <https://chronica-oju6uvtmj.now.sh> to the following aliases:

* https://chronica.xyz
* https://www.chronica.xyz
* https://chronica.ckipp01.now.sh
* https://chronica-git-master.ckipp01.now.sh


![](https://github.trello.services/images/mini-trello-icon.png) [Client: take data from the server](https://trello.com/c/k4CGU6th/4-client-take-data-from-the-server)


this method is supposed to find a particular @merchant by its id, but right now it's returning all the merchants in the database


Congrats!


Nice, this should be handy!


Collaborator: Review for this commit was created. [Link to review](http://tests-a.collabdevteam.net:8080/ui#review:id=263)


Collaborator: Review for this commit was created. [Link to review](http://tests-a.collabdevteam.net:8080/ui#review:id=265)


@therefromhere Thanks for the note!

Maybe I should change it to a more readable form e.g.
- `InAppPyValidationError(message=error message, raw_response={'foo': 'bar'})`
- `GoogleError(message=error message, raw_response={'foo': 'bar'})`


With indentchar set to `|`, does it look like this?
```
fbi
||||open
||||||||up
```


Thanks for check this, but was a work in progress at that time. I did some changes and I just test it with the AC unit.


Reproducible only when `"esModuleInterop": true` is used.


These routes need to have merchants/:id


![](https://github.trello.services/images/mini-trello-icon.png) [Server: allow CORS](https://trello.com/c/Z57fvF4K/7-server-allow-cors)


ERICK IS A GIRL 🌷🌷🌷


Yes, but only one pipe per tab like this:
<img width="842" alt="Screen Shot 2019-07-24 at 9 24 27 PM" src="https://user-images.githubusercontent.com/5513065/61845781-8351a880-ae59-11e9-913a-3410cdc6c36b.png">


Before run the web app please change the link according to you.Because for testing purpose I saved this folder in my desktop so the link will not work for you


[潘静怡-作品集-compressed.pdf](https://github.com/0513Cassie/pjy/files/3429713/-.-compressed.pdf)


crack-refactor (jasondegraw) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-UnitTestsCoverage-Debug: OK (1129 of 1129 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-42.41%25-green.png)


Successfully aliased the URL <https://flask-todo-d1de6ixvo.now.sh> to the following aliases:

* https://flask-todo.altsun.now.sh
* https://flask-todo-git-master.altsun.now.sh


wau


Should be fixed by https://github.com/NatronGitHub/openfx-misc/commit/e2da0e111ab50884c1786a4de079d632fadcc298 and/or https://github.com/NatronGitHub/openfx-misc/commit/e29f5259ed225f697385a56d22423499da7715cb


That would add overhead. I would rather call comp_i in intra_blob().


hledám , ale v  aktuální verzi projektu co mám v android studiu ho nemám, takže nevím... něco starého? :D


报错啊老哥，
`Querying TIANJIN 2019-08-25
{ TimeoutError: waiting for function failed: timeout 15000ms exceeded
    at new WaitTask (/Users/m/Documents/Code/tofel_checker/toefl-neea-checker/node_modules/puppeteer/lib/DOMWorld.js:561:28)
    at DOMWorld.waitForFunction (/Users/m/Documents/Code/tofel_checker/toefl-neea-checker/node_modules/puppeteer/lib/DOMWorld.js:466:12)
    at Frame.waitForFunction (/Users/m/Documents/Code/tofel_checker/toefl-neea-checker/node_modules/puppeteer/lib/FrameManager.js:658:28)
    at Frame.waitFor (/Users/m/Documents/Code/tofel_checker/toefl-neea-checker/node_modules/puppeteer/lib/FrameManager.js:618:19)
    at Page.waitFor (/Users/m/Documents/Code/tofel_checker/toefl-neea-checker/node_modules/puppeteer/lib/Page.js:1037:29)
    at Toefl.query_seat (/Users/m/Documents/Code/tofel_checker/toefl-neea-checker/index.js:119:25)
    at process._tickCallback (internal/process/next_tick.js:68:7) name: 'TimeoutError' }`


求帮解决一下，事成之后2captcha余额可以送你（10刀好贵）


Thanks for reporting this. It is now [fixed](https://github.com/Slicer/Slicer/commit/8a036881fb5db77f999ba764c28a7baebb4cf6f7).


verion


Successfully aliased the URL <https://flask-todo-rdjyudi5e.now.sh> to the following aliases:

* https://flask-todo.altsun.now.sh
* https://flask-todo-git-master.altsun.now.sh


Yes, I can write something up once I get the chance. Navigating between tabs is done with the Left and Right d-pad keys and navigating between list items is done with the Up and Down d-pad keys


by the way @rodlie once you got the windows build running, would you work on a docker-windows image containing the SDK and the build scripts?
I am very close to having the linux builds with a single docker run on these images:
https://cloud.docker.com/u/natrongithub/repository/list

It should be possible to build a windows SDK image based on one of these base windows images (require windows 10 to run): https://hub.docker.com/_/microsoft-windows-base-os-images

Of course that would be a Windows 10 build only, but at least it would enable any user to build Natron easily (snapshot or release).


Just the tip?


oh


You can control the type field here to downgrade to legacy (PCI_IRQ_LEGACY).


Successfully aliased the URL <https://ref-backend-jvm1gjkhj.now.sh> to the following aliases:

* https://ref-backend.ziongit.now.sh
* https://ref-backend-git-master.ziongit.now.sh


I don't think we need to bump. The code can detect if version 2 is available, and then it can evaluate the flags field.


Now could not deploy this pull request since the "files" configuration in `now.json` lists these files or directories which do not exist:

* `.git/HEAD`
* `.git/packed-refs`
* `.git/refs/heads/master`

These paths may be missing from the GitHub repository because of a `.gitignore` file.
Consider committing them to GitHub or removing them from the "files" list and generating the paths on Now instead using a [build script for a Node.js deployment](https://zeit.co/docs/deployment-types/node), or within your `Dockerfile` for a [docker deployment](https://zeit.co/docs/deployment-types/docker).

For more information on the "files" configuration in now.json, visit [https://zeit.co/docs/features/configuration#files(array)](https://zeit.co/docs/features/configuration#files(array))


Successfully aliased the URL <https://github-issue-search-client-i8v7kjpl1.now.sh> to the following aliases:

* https://silverstripe-github-issues.now.sh
* https://github-issue-search-client.silverstripeltd.now.sh
* https://github-issue-search-client-git-master.silverstripeltd.now.sh


[Circle has built](https://circleci.com/gh/cypress-io/cypress/138505) the `linux x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    export CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.4.1/linux-x64/circle-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-138488/cypress.zip
    npm install https://cdn.cypress.io/beta/npm/3.4.1/circle-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-138496/cypress.tgz


Why using bits 8..11, rather than 0..3?


Successfully aliased the URL <https://github-issue-search-client-ahn2kmgn4.now.sh> to the following aliases:

* https://silverstripe-github-issues.now.sh
* https://github-issue-search-client.silverstripeltd.now.sh
* https://github-issue-search-client-git-master.silverstripeltd.now.sh


[AppVeyor has built](https://ci.appveyor.com/project/cypress-io/cypress/builds/26229184/job/h34rkagyvp5d7n70) the `win32 ia32` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    set CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.4.1/win32-ia32/appveyor-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-26229184/cypress.zip
    npm install https://cdn.cypress.io/beta/binary/3.4.1/win32-ia32/appveyor-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-26229184/cypress.zip


Checkmarx scan results 25 Jul 2019 07:50 UTC +03:00

High
Medium
Low
Info

New
0
0
0
0

Recurrent
0
0
0
0

Fixed
0
0
0
0

 Open Viewer
Included commits

Commit ID	Owner

a23cad998261c81bf63aa21ac681a2e8b5303e7c	@web-flow


[AppVeyor has built](https://ci.appveyor.com/project/cypress-io/cypress/builds/26229184/job/42f1w0r2axcgs4ot) the `win32 x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    set CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.4.1/win32-x64/appveyor-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-26229184/cypress.zip
    npm install https://cdn.cypress.io/beta/binary/3.4.1/win32-x64/appveyor-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-26229184/cypress.zip


Deployment failed with the following error:

~~~
The property `config.public` in now.json can only be of type `Boolean`.
~~~


I would rather report positively, when the port is present and not disabled.


Successfully aliased the URL <https://wiki-1i0rxne3p.now.sh> to the following aliases:

* https://wiki.ryanc.top
* https://wiki.sirm2zisv.now.sh
* https://wiki-git-master.sirm2zisv.now.sh


sun of the beach


what happened?


We can also let the IOAPIC setup for IRQ 3 and 4 depend on this.


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* https://taui.now.sh
* https://taui.conveyal.now.sh
* https://taui-git-dev.conveyal.now.sh


> what happened?

gg


自学训练营学习17群 DAY2 @seven_tears


Successfully aliased the URL <https://monorepo-izjmbed05.now.sh> to the following aliases:

* https://monorepo.storybook.now.sh
* https://monorepo-git-next.storybook.now.sh


Ah, forget this: REQUIRED_VERSION is actually "MAX_COMPATIBLE_VERSION". Misleading comment and naming.


Nack. Again, this is no comm region topic. It's a pure jailhouse-cell-linux thing.


Successfully aliased the URL <https://informatif-bc2q368hf.now.sh> to the following aliases:

* https://informatif.now.sh
* https://informatif.informatif-now1.now.sh
* https://informatif-git-master.informatif-now1.now.sh


[bot] 自动构建 [auto-dragalia-31c3c2d9.zip](https://circleci.com/gh/NateScarlet/auto-dragalia/458/artifacts/0/home/circleci/project/artifacts/auto-dragalia-31c3c2d9.zip)


[Circle has built](https://circleci.com/gh/cypress-io/cypress/138527) the `darwin x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    export CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.4.1/darwin-x64/circle-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-138502/cypress.zip
    npm install https://cdn.cypress.io/beta/npm/3.4.1/circle-develop-f189d5e40849cc0675949b3cf0fa7c4701b40277-138500/cypress.tgz


Build this information from the config, rather than bothering the hypervisor to do the math.


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* https://informatif-api.now.sh
* https://informatif-api.informatif-now1.now.sh
* https://informatif-api-git-master.informatif-now1.now.sh


Successfully aliased the URL <https://informatif-hfg547m34.now.sh> to the following aliases:

* https://informatif.now.sh
* https://informatif.informatif-now1.now.sh
* https://informatif-git-master.informatif-now1.now.sh


your code is printing 1 for 0, -1 too. Relook into your code please


add-diagnostic-script (jasondegraw) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


It is working fine. Check if you can make it much more simpler.


add-diagnostic-script (jasondegraw) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (9 of 9 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


nice


Check two lists whether have similar elements.


Shouldn't this be fixed in the docs repo then?

GitHub search does not find any reference for `yargs` in the docs repo.


Fibbonacci - Should not return anything or should return None when input is 0


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* https://tamsenwedding.com
* https://www.tamsenwedding.com
* https://tamsenwedding.doralchan.now.sh
* https://tamsenwedding-git-master.doralchan.now.sh


Comparison between OpenIFEM results output and shell solver native output:
![Screenshot from 2019-07-25 01-08-11](https://user-images.githubusercontent.com/21187771/61847558-12ba8400-ae79-11e9-8e7b-db713733549b.png)


Reverse - is working fine. Check if it can be optimised a little more.


test


In the commit name, SD should read SEM


This didn't fix a bug, but created one I returned it to how it was in my pr. Now Travis builds don't fail also how nice.


Thanks for you effort. I'll try to look into this later, when I'm in my Windows development environment (https://github.com/hluk/CopyQ/issues/1177).


For string reverse check if you can write it in a pythonic way


For palindrome, check if you can write the code for integers and strings in a single program


Jiu


CSS2 (網頁+回應式排版教學) .htm


Fibbonacci - should not print anything/ or should print None for values <= 0


IYR


Prime Numbers - Not working


@MehdiSaffar We need to move the container from the original position to the new position, so we need to store the original position.


축하합니다.


Congrats!


that doesn't really work, does it?

with USE="iconv ipv6 -acl -examples -static -stunnel -xattr" 0 KiB

```
>>> Source configured.
>>> Compiling source in /var/tmp/portage/net-misc/rsync-3.1.3/work/rsync-3.1.3 ...
make -j4
autoconf -o configure.sh
autoconf -o configure.sh
autoheader && touch config.h.in
autoheader && touch config.h.in
configure.sh has CHANGED.
config.h.in is unchanged.
You may need to run:
  make reconfigure
make: *** [Makefile:157: configure.sh] Error 1
make: *** Waiting for unfinished jobs....
configure.sh has CHANGED.
config.h.in has CHANGED.
You may need to run:
  make reconfigure
make: *** [Makefile:157: config.h.in] Error 1
```


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/xcode11/174/display/redirect)

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啊啊啊啊


crack-refactor (jasondegraw) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-IntegrationCoverage-Debug: OK (667 of 667 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-68.46%25-green.png)


...and experimental Longley-Rice...


Successfully aliased the URL <https://real-world-application-backend-e58ykpqs0.now.sh> to the following aliases:

* https://real-world-application-backend.dylanspeight92.now.sh
* https://real-world-application-backend-git-master.dylanspeight92.now.sh


We cannot simply push the container into `google.maps.Map.controls[newPosition]`.

Instead, we must first move it out of `google.maps.Map.controls[oldPosition]`, and then do the push operation.


Fibonacci - Should not print anything for <= 0


ss


rip


It will always work, pngoverlay-cairo creates a 48x48 png icon (i think)..
but if the source is not 48x48.. the result is a truncated icon (not
properly resized)


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add-diagnostic-script (jasondegraw) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: OK (2492 of 2492 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


crack-refactor (jasondegraw) - Win64-Windows-10-VisualStudio-16: OK (2448 of 2455 tests passed, 19 test warnings)

Messages:\n
 * 19 tests had: ESO small diffs.
 * 23 tests had: EIO diffs.
 * 20 tests had: Table small diffs.
 * 19 tests had: MTR small diffs.
 * 7 tests had: ESO big diffs.
 * 2 tests had: ERR diffs.
 * 1 test had: Table big diffs.
 * 1 test had: SSZ small diffs.
 * 2 tests had: ZSZ small diffs.

Failures:\n

regression Test Summary
 * Passed: 655
 * Failed: 7

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.71%25-yellow.png)


It is, indeed, even though not all kinds of origin are supported and also some git tarballs aren't fetched from the repository release file.
Most of the packages get recognized and found correctly, anyway.


That is why I had the addAddress function in a previous version. It forced the attacker to race with 2 transaction vs 1 legit. But you said it was not exactly what we are expecting here, so there might be another way... I will think about it.


We already have position here, why we still need to fill "el" here ?


lol


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I apparently read your comment 24h too late... Sorry about that :/ (and good job on that!) ;)


WOOO!


Much better!


BGD算法


Correct, sorry.


buen codigo bro


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X509err(X509_F_DO_X509_TO_X509_REQ_EX, ERR_R_MALLOC_FAILURE);


int?


static?


rm


alphapapa <notifications@github.com> writes:

> And I won't touch it until you say it's okay, BTW.

It's ok now, you can commit as you want, I gave you admin right on repo.
I also made a PR on Melpa.

--
Thierry

Get my Gnupg key:
gpg --keyserver pgp.mit.edu --recv-keys 59F29997


Here not implements the 'onFinish()'.When use this spring-cloud-stream with spring-cloud-gateway,  spring boot will use this class to handler bind, which cause validations on GatewayProperties.java not work, we are using the spring -cloud-stream 2.1.0.RC4.


Ok I have an idea. There is a 3rd parameter together with pass1 and pass2. It is a nonce, and the 3 parameters are hashed together with the sending address. The hash has to satisfy some condition (could be leading zeros, like bitcoin mining). The idea is that the attacker will have to waste time guessing the nonce once the legit transaction is broadcasted because he is sending from a different address.
Could this work? I just do not have the time to implement it right now. I will try in the following days, but it would be of great help if you tell me that I am in the right way.


Couldn't run policy because this branch has conflicts that must be resolved, the policy will automatically run again after the conflicts are resolved
:point_right: click here to view a full list of the events :point_left:


@Toilal [v0.10.0-beta1](https://github.com/mutagen-io/mutagen/releases/tag/v0.10.0-beta1) has been tagged. I'm working on launching a revamped site with documentation for the new features, but if you'd like to start testing, there's some documentation in the release notes. I'm hoping to do the final release for this version ASAP.


add-diagnostic-script (jasondegraw) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-UnitTestsCoverage-Debug: OK (1126 of 1126 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-42.38%25-green.png)


啊啊啊


啊啊啊啊啊


啊啊啊啊


LIBREOFFICE 라고 쓰고 싶으셨던거 아닌가요?


Successfully aliased the URL <https://my-portfolio-aefi6jmfi.now.sh> to the following aliases:

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* https://www.johno.com
* https://johno.johno1.now.sh
* https://johno-git-master.johno1.now.sh


Or do you mean the customizer.js file?


Ok, možná starý pull request. Když ho nepotřebuješ, tak ho klidně smaž.

On Thu, Jul 25, 2019, 6:33 AM kujade <notifications@github.com> wrote:

> hledám , ale v aktuální verzi projektu co mám v android studiu ho nemám,
> takže nevím... něco starého? :D
>
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[bot] 自动构建 [auto-dragalia-fca92b6b.zip](https://circleci.com/gh/NateScarlet/auto-dragalia/460/artifacts/0/home/circleci/project/artifacts/auto-dragalia-fca92b6b.zip)


all ser


在composer 拿下来的最新版本 2.0.14 并没有解决问题，请问可以把修改同步到composer内吗


I am not sure I fully understand. . . What do you believe needs to be implemented in the `onFinish()`?


tak mám to celé mergnout ? :)


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from the paper on page 355(12), the formula for "1. The average CPI of the jobs on core k:"


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This is 3rd commit Final


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:hourglass_flowing_sand: Waiting for custom rule data to be resolved
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@codahale There was a bug with this effect, sorry about that. Please update. If this is still happening with the latest version, let me know.


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Both len and len_rd should be equal, maybe this could be checked.


- NamelessCoder\GizzleGitPlugins\GizzlePlugins\ClonePlugin:000000000895aefb00000000654c0d94:
  - 0: Executing Git clone command: /usr/bin/git clone --depth 1 --single-branch --branch '1.0.1' 'https://github.com/nitsan-technologies/ns_guestbook.git' /tmp/aea6cd6db0552e33917e63c3d1759b8a3da8d9ff/ns_guestbook
  - NamelessCoder\TYPO3RepositoryGizzle\GizzlePlugins\ExtensionRepositoryReleasePlugin:000000000895aee500000000654c0d94:
    - resultCode: 10504
    - resultMessages:
      - 0: Please note that it might take a while (up to an hour) until your extension and the documentation appear on TYPO3.org.
      - version: 1.0.1


In spring boot, the ValidationBindHandler.onFinish() will call validate(name, target, context, result) to validate the properties, but in spring-cloud-stream2.1.0, the BindingHandlerAdvise.apply()
which implements the BindHandler by only implementing the onStart() does not validation. When using spring-cloud-stream2.1.0 in spring-cloud-gateway, the BindingHandlerAdvise will replace ValidationBindHandler of SpringBoot, so even I made a wrong config of "spring.cloud.gateway.routes", the project start successfully as it supposed to be fail.

At 2019-07-25 13:54:47, "Oleg Zhurakousky" <notifications@github.com> wrote:

I am not sure I fully understand. . . What do you believe needs to be implemented in the onFinish()?

—
You are receiving this because you commented.
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Uhm, isn't this check already covering the EOS case?


Ah no, those should be devDependencies. Published a patch.


How about tilde and backslash?