Successfully aliased the URL <https://proyecto-react-dk61whwv6.now.sh> to the following aliases.

* https://proyecto-react.jhonhst2.now.sh
* https://proyecto-react-git-master.jhonhst2.now.sh


alors comme ca on met=42 @jeremiemartel


Successfully aliased the URL <https://wedding-83vf3cgio.now.sh> to the following aliases.

* https://christinaanddanswedding.com
* https://wedding.dangurney.now.sh
* https://wedding-git-master.dangurney.now.sh


Successfully aliased the URL <https://asp-net-core-3ij3slq1p.now.sh> to the following aliases.

* https://asp-net-core.josecamacho.now.sh
* https://asp-net-core-git-master.josecamacho.now.sh


This is only needed to be @Intrinsic if they have matching method names.


TeamCity Bvcms / Build [Build 1450](https://builds.tpsdb.com/viewLog.html?buildId=7125&buildTypeId=Bvcms_Build) is now running


Successfully aliased the URL <https://ae-icons-component-7a6h4tjlq.now.sh> to the following aliases.

* https://ae-icons-component.adaept.now.sh
* https://ae-icons-component-git-master.adaept.now.sh


Uh, this should not extend IInventory as it is IInventory.

Cast it.


ZEIT Now cannot deploy this project to production due to following domain related issues:

 * `kevinanderson.codes`(for alias `kevinanderson.codes`) is not found inside your account. [Add it](https://zeit.co/dashboard/domains?action=add&domain=kevinanderson.codes).


Simply forgotten! Sorry.


Yes.


Deployment failed with the following error:

~~~
You defined 9 builds that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


[R/bootstrap.R:5:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L5) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:6:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#' @param SE_scored a \code{SummarizedExperiment} object with genes as the
                                                                          ^
```
[R/bootstrap.R:7:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' row features and signature scores in the \code{colData}. There should also
                                                                             ^
```
[R/bootstrap.R:9:73:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L9) *style:* **Trailing whitespace is superfluous.**
```r
#' @param annotationColName a character string giving the column name in
                                                                        ^
```
[R/bootstrap.R:11:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
#' @param SignatureColNames a vector of column names in the
                                                           ^
```
[R/bootstrap.R:13:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L13) *style:* **Trailing whitespace is superfluous.**
```r
#' @param num.boot integer. The number of times to bootstrap the data. The
                                                                          ^
```
[R/bootstrap.R:17:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:18:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
#' @return A list of length 3 returning a vector of p-values for a 2-sample
                                                                           ^
```
[R/bootstrap.R:19:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L19) *style:* **Trailing whitespace is superfluous.**
```r
#' t-test, bootstrapped AUC values, and an AUC value for using all scored values
                                                                                ^
```
[R/bootstrap.R:21:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L21) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:23:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L23) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:24:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L24) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/bootstrap.R:27:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#'  prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts",
                                                                      ^~
```
[R/bootstrap.R:34:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L34) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/bootstrap.R:35:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L35) *style:* **Trailing whitespace is superfluous.**
```r
bootstrapAUC <- function(SE_scored, annotationColName, signatureColNames,
                                                                         ^
```
[R/bootstrap.R:38:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L38) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:41:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L41) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:45:5:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L45) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(pb.show)  pb <- txtProgressBar(min = 0, max = total, style = 3)
    ^
```
[R/bootstrap.R:46:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L46) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:52:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L52) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:57:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L57) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:61:51:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L61) *style:* **Use TRUE instead of the symbol T.**
```r
      index <- sample(1:length(score), replace = T)
                                                 ~^
```
[R/bootstrap.R:69:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L69) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:74:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L74) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:81:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L81) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:82:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L82) *style:* **Trailing whitespace is superfluous.**
```r
#' This function collects the results of bootstrapping and t-tests for a scored
                                                                               ^
```
[R/bootstrap.R:83:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L83) *style:* **Trailing whitespace is superfluous.**
```r
#' gene expression dataset and presents them using a JavaScript table with an
                                                                             ^
```
[R/bootstrap.R:87:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L87) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:89:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L89) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:90:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L90) *style:* **Trailing whitespace is superfluous.**
```r
#' @return A JavaScript table with an R interface using the \code{DT} package.
                                                                              ^
```
[R/bootstrap.R:91:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L91) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:92:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L92) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/bootstrap.R:95:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L95) *style:* **Trailing whitespace is superfluous.**
```r
#'  prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts",
                                                                      ^~
```
[R/bootstrap.R:99:67:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L99) *style:* **Trailing whitespace is superfluous.**
```r
#'  tableAUC(SE_scored = prof_indian, annotationColName = "label",
                                                                  ^
```
[R/bootstrap.R:101:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L101) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/bootstrap.R:102:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L102) *style:* **Trailing whitespace is superfluous.**
```r
tableAUC <- function(SE_scored, annotationColName, signatureColNames,
                                                                     ^
```
[R/bootstrap.R:105:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L105) *style:* **Trailing whitespace is superfluous.**
```r
  BS.Results <- bootstrapAUC(SE_scored, annotationColName, signatureColNames,
                                                                             ^
```
[R/bootstrap.R:110:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L110) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:112:63:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L112) *style:* **Trailing whitespace is superfluous.**
```r
  return(DT::datatable(cbind("Signatures" = signatureColNames,
                                                              ^
```
[R/bootstrap.R:113:59:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L113) *style:* **Trailing whitespace is superfluous.**
```r
                             "P-values" = round(pvals, 4),
                                                          ^
```
[R/bootstrap.R:114:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L114) *style:* **Trailing whitespace is superfluous.**
```r
                             "-10*Log(p-values)" = round(-10 * log(pvals), 4),
                                                                              ^
```
[R/bootstrap.R:115:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L115) *style:* **Trailing whitespace is superfluous.**
```r
                             "LowerAUC" = round(apply(aucs_boot, 2, quantile,
                                                                             ^
```
[R/bootstrap.R:116:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L116) *style:* **Trailing whitespace is superfluous.**
```r
                                                      probs = .05), 4),
                                                                       ^
```
[R/bootstrap.R:117:54:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L117) *style:* **Trailing whitespace is superfluous.**
```r
                             "AUCs" = round(aucs, 4),
                                                     ^
```
[R/bootstrap.R:118:40:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L118) *style:* **Put spaces around all infix operators.**
```r
                             "UpperAUC"= round(apply(aucs_boot, 2, quantile,
                                      ~^
```
[R/bootstrap.R:118:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L118) *style:* **Trailing whitespace is superfluous.**
```r
                             "UpperAUC"= round(apply(aucs_boot, 2, quantile,
                                                                            ^
```
[R/bootstrap.R:120:58:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L120) *style:* **Use TRUE instead of the symbol T.**
```r
                             )[order(aucs, decreasing = T),],
                                                        ~^
```
[R/bootstrap.R:120:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L120) *style:* **Commas should always have a space after.**
```r
                             )[order(aucs, decreasing = T),],
                                                           ^
```
[R/bootstrap.R:120:62:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L120) *style:* **Trailing whitespace is superfluous.**
```r
                             )[order(aucs, decreasing = T),],
                                                             ^
```
[R/bootstrap.R:121:50:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L121) *style:* **Use TRUE instead of the symbol T.**
```r
                       options = list(scrollX = T, pageLength = 30),
                                                ~^
```
[R/bootstrap.R:121:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L121) *style:* **Trailing whitespace is superfluous.**
```r
                       options = list(scrollX = T, pageLength = 30),
                                                                    ^
```
[R/bootstrap.R:122:36:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L122) *style:* **Use FALSE instead of the symbol F.**
```r
                       rownames = F))
                                  ~^
```
[R/bootstrap.R:126:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L126) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:127:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L127) *style:* **Trailing whitespace is superfluous.**
```r
#' Present the results of AUC bootstrapping for a collection of scored
                                                                      ^
```
[R/bootstrap.R:131:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L131) *style:* **Trailing whitespace is superfluous.**
```r
#' @param num.boot an integer indicating the number of times to bootstrap the
                                                                             ^
```
[R/bootstrap.R:133:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L133) *style:* **Trailing whitespace is superfluous.**
```r
#' @param cex.axis a number between 0 and 1 specifying the magnification to be
                                                                              ^
```
[R/bootstrap.R:134:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L134) *style:* **Trailing whitespace is superfluous.**
```r
#' used for axis annotation relative to the current setting of \code{cex}.
                                                                          ^
```
[R/bootstrap.R:135:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L135) *style:* **Trailing whitespace is superfluous.**
```r
#' @param cex a number between 0 and 1 giving the amount by which plotting text
                                                                               ^
```
[R/bootstrap.R:139:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L139) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:141:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L141) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:142:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L142) *style:* **Trailing whitespace is superfluous.**
```r
#' @return A plot with side-by-side boxplots of bootstrapped AUC values for
                                                                           ^
```
[R/bootstrap.R:144:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L144) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:145:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L145) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/bootstrap.R:148:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L148) *style:* **Trailing whitespace is superfluous.**
```r
#'  prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts",
                                                                      ^~
```
[R/bootstrap.R:154:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L154) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~
```
[R/bootstrap.R:155:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L155) *style:* **Trailing whitespace is superfluous.**
```r
compareBoxplots <- function(SE_scored, annotationColName, signatureColNames,
                                                                            ^
```
[R/bootstrap.R:159:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L159) *style:* **Trailing whitespace is superfluous.**
```r
  BS.Results <- bootstrapAUC(SE_scored, annotationColName, signatureColNames,
                                                                             ^
```
[R/bootstrap.R:170:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L170) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:174:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L174) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:176:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L176) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:178:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L178) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:179:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L179) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/bootstrap.R:182:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L182) *style:* **Trailing whitespace is superfluous.**
```r
#'  prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts",
                                                                      ^~
```
[R/bootstrap.R:185:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L185) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/bootstrap.R:189:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L189) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:194:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L194) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:239:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L239) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:247:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L247) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:253:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L253) *style:* **Trailing whitespace is superfluous.**
```r
    plot_n <- as.data.frame(cbind(FPR = round(pred$FPR, 4),
                                                           ^
```
[R/bootstrap.R:260:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L260) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:263:43:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L263) *style:* **Trailing whitespace is superfluous.**
```r
      "Empirical ROC curve")), size = 1) +
                                          ^
```
[R/bootstrap.R:264:53:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L264) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::facet_wrap(~Signature, scales = 'free',
                                                    ^
```
[R/bootstrap.R:266:64:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L266) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::geom_abline(ggplot2::aes(intercept = 0, slope = 1,
                                                               ^
```
[R/bootstrap.R:267:73:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L267) *style:* **Trailing whitespace is superfluous.**
```r
                                      col = choose_colors[2]), size = 1,
                                                                        ^
```
[R/bootstrap.R:271:36:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L271) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::scale_color_manual("",
                                   ^
```
[R/bootstrap.R:275:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L275) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:280:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L280) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:283:62:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L283) *style:* **Trailing whitespace is superfluous.**
```r
#' in the ROC plots. The default is \code{c("cornflowerblue",
                                                             ^
```
[R/bootstrap.R:285:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L285) *style:* **Trailing whitespace is superfluous.**
```r
#' @param name a character string giving the title of the boxplot. If
                                                                     ^
```
[R/bootstrap.R:286:39:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L286) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{NULL}, the plot title will be
                                      ^
```
[R/bootstrap.R:287:66:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L287) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{"ROC plots for Gene Signatures, <ci.lev>\% Confidence"}.
                                                                 ^
```
[R/bootstrap.R:289:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L289) *style:* **Trailing whitespace is superfluous.**
```r
#' @param ci.lev a number between 0 and 1 giving the desired level of
                                                                     ^
```
[R/bootstrap.R:291:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L291) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:293:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L293) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:295:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L295) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:296:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L296) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/bootstrap.R:299:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L299) *style:* **Trailing whitespace is superfluous.**
```r
#'  prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts",
                                                                      ^~
```
[R/bootstrap.R:302:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L302) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/bootstrap.R:306:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L306) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:309:68:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L309) *style:* **Trailing whitespace is superfluous.**
```r
                                choose_colors = c("cornflowerblue",
                                                                   ^
```
[R/bootstrap.R:313:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L313) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:358:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L358) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:366:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L366) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:369:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L369) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:374:7:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L374) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(any(is.nan(this.conf$UpperTPR))) {
      ^
```
[R/bootstrap.R:377:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L377) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/bootstrap.R:378:65:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L378) *style:* **Trailing whitespace is superfluous.**
```r
    plot_n <- as.data.frame(cbind(FPR = round(this.conf$FPR, 4),
                                                                ^
```
[R/bootstrap.R:379:65:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L379) *style:* **Trailing whitespace is superfluous.**
```r
                                  TPR = round(this.conf$TPR, 4),
                                                                ^
```
[R/bootstrap.R:385:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L385) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:387:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L387) *style:* **Commas should always have a space after.**
```r
  plot_dat[,1:4] <- as.data.frame(apply(plot_dat[,1:4], 2, as.numeric))
            ^
```
[R/bootstrap.R:387:51:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L387) *style:* **Commas should always have a space after.**
```r
  plot_dat[,1:4] <- as.data.frame(apply(plot_dat[,1:4], 2, as.numeric))
                                                  ^
```
[R/bootstrap.R:388:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L388) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:389:5:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L389) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(is.null(name)) name <- paste("ROC plots for Gene Signatures, ", ci.lev,
    ^
```
[R/bootstrap.R:389:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L389) *style:* **Trailing whitespace is superfluous.**
```r
  if(is.null(name)) name <- paste("ROC plots for Gene Signatures, ", ci.lev,
                                                                            ^
```
[R/bootstrap.R:391:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L391) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:393:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L393) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::geom_ribbon(ggplot2::aes(ymin = LowerTPR, ymax = UpperTPR,
                                                                       ^
```
[R/bootstrap.R:394:69:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L394) *style:* **Trailing whitespace is superfluous.**
```r
                                      fill = "Confidence Interval"),
                                                                    ^
```
[R/bootstrap.R:396:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L396) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::geom_line(ggplot2::aes(x = FPR, y = TPR, col =
                                                           ^
```
[R/bootstrap.R:397:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L397) *style:* **Trailing whitespace is superfluous.**
```r
                                      "Empirical ROC curve"), size = 1) +
                                                                         ^
```
[R/bootstrap.R:398:53:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L398) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::facet_wrap(~Signature, scales = 'free',
                                                    ^
```
[R/bootstrap.R:400:64:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L400) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::geom_abline(ggplot2::aes(intercept = 0, slope = 1,
                                                               ^
```
[R/bootstrap.R:401:73:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L401) *style:* **Trailing whitespace is superfluous.**
```r
                                      col = choose_colors[2]), size = 1,
                                                                        ^
```
[R/bootstrap.R:403:36:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L403) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::scale_color_manual("",
                                   ^
```
[R/bootstrap.R:406:35:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L406) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot2::scale_fill_manual("",
                                  ^
```
[R/bootstrap.R:412:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L412) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:417:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L417) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:418:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L418) *style:* **Trailing whitespace is superfluous.**
```r
#' Given an input of a Summarized Experiment with a counts or CPM assay, This
                                                                             ^
```
[R/bootstrap.R:419:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L419) *style:* **Trailing whitespace is superfluous.**
```r
#' function creates additional assays for a gene expression count dataset
                                                                         ^
```
[R/bootstrap.R:421:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L421) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:430:63:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L430) *style:* **Trailing whitespace is superfluous.**
```r
#' of whichever assay is specified in \code{"output_name"}. If
                                                              ^
```
[R/bootstrap.R:432:40:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L432) *style:* **Trailing whitespace is superfluous.**
```r
#' be created. Default is \code{FALSE}.
                                       ^
```
[R/bootstrap.R:433:67:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L433) *style:* **Trailing whitespace is superfluous.**
```r
#' @param counts_to_CPM logical. This argument only applies if the
                                                                  ^
```
[R/bootstrap.R:435:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L435) *style:* **Trailing whitespace is superfluous.**
```r
#' will include a normalized CPM assay. If \code{counts_to_CPM = TRUE} as well,
                                                                               ^
```
[R/bootstrap.R:436:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L436) *style:* **Trailing whitespace is superfluous.**
```r
#' then a log CPM assay will also be created. Default is \code{TRUE}.
                                                                     ^~
```
[R/bootstrap.R:437:79:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L437) *style:* **Trailing whitespace is superfluous.**
```r
#' @param  prior.counts an integer specifying the average count to be added to
                                                                              ^
```
[R/bootstrap.R:438:66:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L438) *style:* **Trailing whitespace is superfluous.**
```r
#' each observation to avoid taking the log of zero. Used only if
                                                                 ^
```
[R/bootstrap.R:440:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L440) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:441:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L441) *style:* **Trailing whitespace is superfluous.**
```r
#' @return This function returns a \code{SummarizedExperiment} object with up
                                                                             ^
```
[R/bootstrap.R:445:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L445) *style:* **Trailing whitespace is superfluous.**
```r
#' \item{log_<output_name>}{Log of original inputted assay.
                                                           ^
```
[R/bootstrap.R:447:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L447) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:448:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L448) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:450:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L450) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:452:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L452) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:453:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L453) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/bootstrap.R:458:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L458) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:462:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L462) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:466:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L466) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/bootstrap.R:471:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L471) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:473:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L473) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:477:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L477) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:483:4:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L483) *style:* **Trailing whitespace is superfluous.**
```r
  }
   ^
```
[R/bootstrap.R:484:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L484) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:487:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L487) *style:* **Trailing whitespace is superfluous.**
```r
      SE_obj, paste("log", output_name, sep = "_")) <- log(assay_main +
                                                                       ^
```
[R/bootstrap.R:489:4:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L489) *style:* **Trailing whitespace is superfluous.**
```r
  }
   ^
```
[R/bootstrap.R:490:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L490) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/bootstrap.R:496:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/bootstrap.R#L496) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/data.R:3:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' A set of 34 Tuberculosis gene signatures from various publications. This set
                                                                               ^
```
[R/data.R:4:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
#' of signatures uses gene symbols. Attempts have been made to use updated gene
                                                                               ^
```
[R/data.R:5:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L5) *style:* **Trailing whitespace is superfluous.**
```r
#' symbols and remove symbols that did not match the most recent annotation.
                                                                            ^
```
[R/data.R:6:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#' Additional sets for Entrez IDs and Ensembl IDs are forthcoming. The assigned
                                                                               ^
```
[R/data.R:7:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' signature name ends with the number of genes in the original signature.
                                                                          ^
```
[R/data.R:9:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L9) *style:* **Trailing whitespace is superfluous.**
```r
#' whereas others are negative identifiers. This should be taken into account
                                                                             ^
```
[R/data.R:52:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L52) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/data.R:61:113:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L61) *style:* **Trailing whitespace is superfluous.**
```r
#' An example dataset containing the gene expression and metadata in a SummarizedExperiment object for an Indian
                                                                                ^
```
[R/data.R:63:83:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L63) *style:* **Trailing whitespace is superfluous.**
```r
#' and can be accessed via \code{TB_indian$label}. The SummarizedExperiment object
                                                                                ^
```
[R/data.R:79:89:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/data.R#L79) *style:* **Trailing whitespace is superfluous.**
```r
#' Samples with both TB and HIV contamination are marked as \code{tb_hiv}, while samples
                                                                                ^
```
[R/evaluate.R:2:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/evaluate.R:3:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L3) *style:* **Trailing whitespace is superfluous.**
```r
#' @param inputData a \code{data.frame} or \code{matrix} of gene expression
                                                                           ^
```
[R/evaluate.R:5:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L5) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/evaluate.R:10:13:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/evaluate.R:26:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L26) *style:* **Trailing whitespace is superfluous.**
```r
#' @param targetVec a binary vector of the response variable. Should be
                                                                       ^
```
[R/evaluate.R:28:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/evaluate.R:29:44:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L29) *style:* **Trailing whitespace is superfluous.**
```r
#' @return A list of length 3 with elements
                                           ^
```
[R/evaluate.R:30:49:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L30) *style:* **Trailing whitespace is superfluous.**
```r
#' \item{auc}{The AUC from the LOOCV procedure.}
                                                ^
```
[R/evaluate.R:31:77:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
#' \item{byClass}{A vector containing the sensitivity, specificity, positive
                                                                            ^
```
[R/evaluate.R:32:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
#' predictive value, negative predictive value, precision, recall, F1,
                                                                      ^
```
[R/evaluate.R:49:65:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L49) *style:* **Trailing whitespace is superfluous.**
```r
    fit <- suppressWarnings(glmnet::glmnet(train, targetVec[-j],
                                                                ^
```
[R/evaluate.R:62:62:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L62) *style:* **Trailing whitespace is superfluous.**
```r
    caret::confusionMatrix(as.factor(testPredictionClassVec),
                                                             ^
```
[R/evaluate.R:75:72:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L75) *style:* **Trailing whitespace is superfluous.**
```r
#' @param targetVec a binary vector of the response variable. Should be
                                                                       ^
```
[R/evaluate.R:79:78:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L79) *style:* **Trailing whitespace is superfluous.**
```r
#' @return A list of length 2 with elements \item{auc}{A vector the length of
                                                                             ^
```
[R/evaluate.R:84:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L84) *style:* **Trailing whitespace is superfluous.**
```r
#' detection rate, detection prevalence and balanced accuracy for that
                                                                      ^
```
[R/evaluate.R:115:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L115) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/evaluate.R:118:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L118) *style:* **Trailing whitespace is superfluous.**
```r
#' with logistic regression to allow for numeric and graphical comparison
                                                                         ^
```
[R/evaluate.R:122:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L122) *style:* **Trailing whitespace is superfluous.**
```r
#' @param target.vec.num a numeric binary vector of the response variable.
                                                                          ^
```
[R/evaluate.R:124:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L124) *style:* **Trailing whitespace is superfluous.**
```r
#' @param signature.list a \code{list} of signatures to run with their
                                                                      ^
```
[R/evaluate.R:125:84:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L125) *style:* **Trailing whitespace is superfluous.**
```r
#' associated genes. This list should be in the same format as \code{TBsignatures},
                                                                                ^
```
[R/evaluate.R:126:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L126) *style:* **Trailing whitespace is superfluous.**
```r
#' included in the TBSignatureProfiler package. If \code{signature.list = NULL},
                                                                                ^
```
[R/evaluate.R:127:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L127) *style:* **Trailing whitespace is superfluous.**
```r
#' the default set of signatures \code{TBsignatures} list is used. For details,
                                                                               ^
```
[R/evaluate.R:131:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L131) *style:* **Trailing whitespace is superfluous.**
```r
#' If \code{signature.name.vec = NULL}, the default set of signatures
                                                                     ^
```
[R/evaluate.R:134:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L134) *style:* **Trailing whitespace is superfluous.**
```r
#' @param pb.show logical. If \code{TRUE} then a progress bar for the
                                                                     ^
```
[R/evaluate.R:135:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L135) *style:* **Trailing whitespace is superfluous.**
```r
#' bootstrapping procedure will be displayed as output. The default is
                                                                      ^
```
[R/evaluate.R:137:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L137) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/evaluate.R:154:60:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L154) *style:* **Trailing whitespace is superfluous.**
```r
SignatureQuantitative <- function(df.input, target.vec.num,
                                                           ^
```
[R/evaluate.R:156:61:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L156) *style:* **Trailing whitespace is superfluous.**
```r
                                  signature.name.vec = NULL,
                                                            ^
```
[R/evaluate.R:159:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L159) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:172:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L172) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:177:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L177) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:183:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L183) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:192:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L192) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:199:65:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L199) *style:* **Trailing whitespace is superfluous.**
```r
    result <- LOOAUC_simple_multiple_noplot_one_df(df.list[[i]],
                                                                ^
```
[R/evaluate.R:204:19:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L204) *style:* **Put spaces around all infix operators.**
```r
    st.error <- (1/(num.boot-1))*sum(auc.result[[i]] - mean(auc.result[[i]]))
                 ~^~
```
[R/evaluate.R:204:20:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L204) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    st.error <- (1/(num.boot-1))*sum(auc.result[[i]] - mean(auc.result[[i]]))
                   ^
```
[R/evaluate.R:204:29:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L204) *style:* **Put spaces around all infix operators.**
```r
    st.error <- (1/(num.boot-1))*sum(auc.result[[i]] - mean(auc.result[[i]]))
                           ~^~
```
[R/evaluate.R:204:33:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L204) *style:* **Put spaces around all infix operators.**
```r
    st.error <- (1/(num.boot-1))*sum(auc.result[[i]] - mean(auc.result[[i]]))
                               ~^~
```
[R/evaluate.R:213:40:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L213) *style:* **Trailing whitespace is superfluous.**
```r
    st.error2 <- (1 / (num.boot - 1)) *
                                       ^
```
[R/evaluate.R:214:46:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L214) *style:* **Trailing whitespace is superfluous.**
```r
      sum(boot.output.list[[2]]$Sensitivity -
                                             ^
```
[R/evaluate.R:215:53:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L215) *style:* **Trailing whitespace is superfluous.**
```r
            mean(boot.output.list[[2]]$Sensitivity))
                                                    ^
```
[R/evaluate.R:222:40:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L222) *style:* **Trailing whitespace is superfluous.**
```r
    st.error3 <- (1 / (num.boot - 1)) *
                                       ^
```
[R/evaluate.R:223:46:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L223) *style:* **Trailing whitespace is superfluous.**
```r
      sum(boot.output.list[[2]]$Specificity -
                                             ^
```
[R/evaluate.R:224:53:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L224) *style:* **Trailing whitespace is superfluous.**
```r
            mean(boot.output.list[[2]]$Specificity))
                                                    ^
```
[R/evaluate.R:230:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L230) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/evaluate.R:242:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L242) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/evaluate.R:261:1:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/evaluate.R#L261) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/plot.R:2:3:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plot.R:4:66:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
#' and returns a ComplexHeatmap plot for for visual comparison of
                                                                 ^
```
[R/plot.R:7:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' @param inputData an input data object. It should either be of the class
                                                                          ^
```
[R/plot.R:8:75:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L8) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{SummarizedExperiment} and contain the profiled signature data and
                                                                          ^
```
[R/plot.R:9:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L9) *style:* **Trailing whitespace is superfluous.**
```r
#' annotation data as columns in the colData, or alternatively be of the classes
                                                                                ^
```
[R/plot.R:10:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{data.frame} or \code{matrix} and contain only the gene expression data.
                                                                                ^
```
[R/plot.R:12:76:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
#' @param annotationData a \code{data.frame} or \code{matrix} of annotation
                                                                           ^
```
[R/plot.R:15:74:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L15) *style:* **Trailing whitespace is superfluous.**
```r
#' @param name a character string with the plot title of the heatmap. The
                                                                         ^
```
[R/plot.R:17:80:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#' @param signatureColNames a vector of the column names in \code{colData} that
                                                                               ^
```
[R/plot.R:18:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
#' contain the signature data. Only required if \code{inputData} is a
                                                                     ^
```
[R/plot.R:20:81:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L20) *style:* **Trailing whitespace is superfluous.**
```r
#' @param annotationColNames a vector of the column names in \code{colData} that
                                                                                ^
```
[R/plot.R:21:71:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L21) *style:* **Trailing whitespace is superfluous.**
```r
#' contain the annotation data. Only required if \code{inputData} is a
                                                                      ^
```
[R/plot.R:23:94:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L23) *style:* **Trailing whitespace is superfluous.**
```r
#' @param colList a named \code{list} of named vectors specifying custom color information to
                                                                                ^
```
[R/plot.R:26:63:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L26) *style:* **Trailing whitespace is superfluous.**
```r
#' correspond exactly with the name of each annotation column.
                                                              ^
```
[R/plot.R:27:70:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#' The colors in the vector elements should be named according to the
                                                                     ^
```
[R/plot.R:31:59:](https://github.com/Aubreyodom/TBSignatureProfiler/blob/9dac62228911fa5226a1f7b5ec1f54c7c598a44f/R/plot.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
#' By default, \code{ColorBrewer} color sets will be used.
                                                          ^
```


> @issmith1 @myspri @dmulfinger appreciate any comments on this potential approach to a streaming API.
>
> Looking for feedback in several areas:
>
> 1. The approach to documenting such an API.  This approach leverages our OpenAPI exerienece and seems to be one of the more mature ways to document such an API (even though asyncapi is only a couple years old).  Note the ability to easily leverage our existing data models illustrated by the use of Position schema.
> 2. The protocol.  We'd need more buy-in and testing, but initial sanity check on the use of secure websockets.
> 3. anything else?   This is pretty new, so any blindspots?  major concerns?

I would like to comment about streaming APIs in general. Refer https://github.com/uber/prototool/tree/dev/style#streaming-rpcs for more technical details. Even though the link was related to grpc streaming, it also applies for websocket or any streaming protocol. Tldr is streaming rpc might result in low reliability and scalability if not implemented correctly. Pushing this on to the USS will lead to inconsistent implementation, affecting the SLAs.


@EraChen233 Was this a header-only change or were there modifications to WebDriverAgent source files as well? If the latter, are you able to publish the fork of WebDriverAgent that you used to build this version of the framework, or at least provide the corresponding source file diff as a snippet?

I'm interested in how fb_fast_lastSnapshot is actually utilized, and assuming that it is called from within fb_lastSnapshot as an optimization path, is that correct?

Thank you.


Test passed!


Can you provide a screenshot? I can't see any difference between the tabs.


Successfully aliased the URL <https://cviceni-test-gbxsgvqcd.now.sh> to the following aliases.

* https://cviceni-test.historylab.now.sh
* https://cviceni-test-git-master.historylab.now.sh


I'm trying to understand why this was added. Why you need to check if the class property _listeners match the local copy  with the listener you are about to call? Doesn't this happens in the same stack trace so there's no way we can add or remove listeners while this loop is running or adding and removing to that list can happen concurrently? if that the case i thought this would run in a single zone and no access to the same memory will occur unless you deliberately spawn another thread. The reason I'm asking this is if this can be improved to O(n). I'm happy to help to improve BTW


@hackermd sorry I misunderstood your comment in https://github.com/hackermd/pydicom/pull/2#pullrequestreview-257006614 - I thought you already committed to the branch, and that's why I closed that PR. Sorry.


This link just links back to the article, where I can't find any video (embedded or linked).


## Before this commit

We weren't showing class methods:

## After this commit

Now, we are:


Successfully aliased the URL <https://effector-7hbi2jjub.now.sh> to the following aliases.

* https://effector.now.sh
* https://effector.zerobias.now.sh
* https://effector-git-master.zerobias.now.sh


Successfully aliased the URL <https://ota-solid-mwfgnsdng.now.sh> to the following aliases.

* https://ota-solid.now.sh
* https://ota-solid.ota.now.sh
* https://ota-solid-git-master.ota.now.sh


Copy of this build can be found at
https://builds.myetherwallet.com/build/2e8c97aa022de279506226bf6b46ac8dae87ec0a/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmVqS9AyyejSaV5DBbFGtXXMUCjFjJHbe67KeABsS4MZqY
                       Virus Total analysis
                       https://www.virustotal.com/file/23e76b86f5abd36920964f31036ee45cab1b83864bbb31353519be5a2fd5b887/analysis/1562185631/


AHHHHHHHHHHHHHHHHHH


Successfully aliased the URL <https://cviceni-test-2abk54znm.now.sh> to the following aliases.

* https://cviceni-test.historylab.now.sh
* https://cviceni-test-git-master.historylab.now.sh


### TinyCI build failure:
[make -j 3] returned [2]:
```[  1%] Built target json11
[ 10%] Built target box2d
[ 37%] Built target sp2freetype
[ 43%] Built target lua
[ 73%] Built target bullet
Scanning dependencies of target Tonks
[ 73%] Building CXX object CMakeFiles/Tonks.dir/src/controls.cpp.o
[ 73%] Building CXX object CMakeFiles/Tonks.dir/src/aiScript.cpp.o
[ 73%] Building CXX object CMakeFiles/Tonks.dir/src/bullet.cpp.o
CMakeFiles/Tonks.dir/build.make:134: recipe for target 'CMakeFiles/Tonks.dir/src/controls.cpp.o' failed
CMakeFiles/Makefile2:219: recipe for target 'CMakeFiles/Tonks.dir/all' failed
Makefile:83: recipe for target 'all' failed

/data/tinyci_build/daid/Tonks/src/controls.cpp: In constructor 'Controls::Controls(int)':
/data/tinyci_build/daid/Tonks/src/controls.cpp:19:36: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [3], const char [9])'
         up.setKeys("up", "keypad 8");
                                    ^
In file included from /data/tinyci_build/daid/Tonks/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Tonks/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/Tonks/src/controls.cpp:20:40: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [5], const char [9])'
         down.setKeys("down", "keypad 2");
                                        ^
In file included from /data/tinyci_build/daid/Tonks/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Tonks/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/Tonks/src/controls.cpp:21:40: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [5], const char [9])'
         left.setKeys("left", "keypad 4");
                                        ^
In file included from /data/tinyci_build/daid/Tonks/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Tonks/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/Tonks/src/controls.cpp:22:42: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [6], const char [9])'
         right.setKeys("right", "keypad 6");
                                          ^
In file included from /data/tinyci_build/daid/Tonks/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Tonks/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
make[2]: *** [CMakeFiles/Tonks.dir/src/controls.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Tonks.dir/all] Error 2
make: *** [all] Error 2
```


Successfully aliased the URL <https://fixthatbug-lbyb76m6s.now.sh> to the following aliases.

* https://fixthatbug.theapricoteffect.now.sh
* https://fixthatbug-git-master.theapricoteffect.now.sh


Pet Express is Sri Lanka's leading IATA & IPATA certified Pet Travel specialist & worldwide service provider for relocating pets all around the world We are a professional Pet Relocation agent based in Colombo who can offer you personalized door-to-door international pet transport services in the safest and the most comfortable way. Pet Express can be your one-stop international pet travel agent for your pets moving to / from Sri Lanka. We at Pet Express, always plan your pet's relocation process carefully and meticulously. Our pet relocation specialists have helped hundreds of pet owners to relocate their beloved pets to reach their new homes. Pet Express has unsurpassed experience in shipping pets to / from Sri Lanka, in to many different countries, and our specialist team will ensure you, that all of your Pet's international travel requirements are met accordingly and your Pet's journey will be planned smoothly and stress-free.
<a href="https://www.petexpress.lk/">Importing a pet dog to Sri Lanka<a>


### TinyCI build failure:
[make -j 3] returned [2]:
```[  1%] Built target json11
[ 10%] Built target box2d
[ 37%] Built target sp2freetype
[ 43%] Built target lua
[ 73%] Built target bullet
Scanning dependencies of target BitAndNibbly
[ 73%] Building CXX object CMakeFiles/BitAndNibbly.dir/src/controls.cpp.o
[ 73%] Building CXX object CMakeFiles/BitAndNibbly.dir/src/areaScene.cpp.o
[ 73%] Building CXX object CMakeFiles/BitAndNibbly.dir/src/main.cpp.o
CMakeFiles/BitAndNibbly.dir/build.make:110: recipe for target 'CMakeFiles/BitAndNibbly.dir/src/controls.cpp.o' failed
CMakeFiles/Makefile2:145: recipe for target 'CMakeFiles/BitAndNibbly.dir/all' failed
Makefile:83: recipe for target 'all' failed

/data/tinyci_build/daid/BitAndNibbly/src/controls.cpp: In constructor 'Controls::Controls(int)':
/data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:23:36: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [3], const char [9])'
         up.setKeys("up", "keypad 8");
                                    ^
In file included from /data/tinyci_build/daid/BitAndNibbly/src/controls.h:4:0,
                 from /data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:24:40: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [5], const char [9])'
         down.setKeys("down", "keypad 2");
                                        ^
In file included from /data/tinyci_build/daid/BitAndNibbly/src/controls.h:4:0,
                 from /data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:25:40: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [5], const char [9])'
         left.setKeys("left", "keypad 4");
                                        ^
In file included from /data/tinyci_build/daid/BitAndNibbly/src/controls.h:4:0,
                 from /data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:26:42: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [6], const char [9])'
         right.setKeys("right", "keypad 6");
                                          ^
In file included from /data/tinyci_build/daid/BitAndNibbly/src/controls.h:4:0,
                 from /data/tinyci_build/daid/BitAndNibbly/src/controls.cpp:1:
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/data/tinyci_build/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
make[2]: *** [CMakeFiles/BitAndNibbly.dir/src/controls.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/BitAndNibbly.dir/all] Error 2
make: *** [all] Error 2
```


@ptatian in order to recreate the changes, should I create a new program?


### TinyCI build failure:
[make -j 3] returned [2]:
```[  1%] Built target json11
[ 10%] Built target box2d
[ 15%] Built target lua
[ 42%] Built target sp2freetype
[ 71%] Built target bullet
Scanning dependencies of target Geronimo
[ 71%] Building CXX object CMakeFiles/Geronimo.dir/src/grablingRope.cpp.o
[ 71%] Building CXX object CMakeFiles/Geronimo.dir/src/controls.cpp.o
[ 72%] Building CXX object CMakeFiles/Geronimo.dir/src/explosion.cpp.o
CMakeFiles/Geronimo.dir/build.make:134: recipe for target 'CMakeFiles/Geronimo.dir/src/controls.cpp.o' failed
CMakeFiles/Makefile2:71: recipe for target 'CMakeFiles/Geronimo.dir/all' failed
Makefile:83: recipe for target 'all' failed

/data/tinyci_build/daid/Geronimo/src/controls.cpp: In constructor 'Controls::Controls(int)':
/data/tinyci_build/daid/Geronimo/src/controls.cpp:20:36: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [3], const char [9])'
         up.setKeys("up", "keypad 8");
                                    ^
In file included from /data/tinyci_build/daid/Geronimo/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Geronimo/src/controls.cpp:1:
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/Geronimo/src/controls.cpp:21:40: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [5], const char [9])'
         down.setKeys("down", "keypad 2");
                                        ^
In file included from /data/tinyci_build/daid/Geronimo/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Geronimo/src/controls.cpp:1:
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/Geronimo/src/controls.cpp:22:40: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [5], const char [9])'
         left.setKeys("left", "keypad 4");
                                        ^
In file included from /data/tinyci_build/daid/Geronimo/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Geronimo/src/controls.cpp:1:
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
/data/tinyci_build/daid/Geronimo/src/controls.cpp:23:42: error: no matching function for call to 'sp::io::Keybinding::setKeys(const char [6], const char [9])'
         right.setKeys("right", "keypad 6");
                                          ^
In file included from /data/tinyci_build/daid/Geronimo/src/controls.h:4:0,
                 from /data/tinyci_build/daid/Geronimo/src/controls.cpp:1:
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note: candidate: void sp::io::Keybinding::setKeys(const std::initializer_list<const sp::string>&)
     void setKeys(const std::initializer_list<const string>& keys);
          ^~~~~~~
/home/tinyci/builds/daid/SeriousProton2/include/sp2/io/keybinding.h:27:10: note:   candidate expects 1 argument, 2 provided
make[2]: *** [CMakeFiles/Geronimo.dir/src/controls.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Geronimo.dir/all] Error 2
make: *** [all] Error 2
```


https://youtu.be/xcs34w8jdTM
https://youtu.be/ckG-cFqsrIo
https://youtu.be/psUdKVUotIo


https://youtu.be/xcs34w8jdTM (part 1)
https://youtu.be/ckG-cFqsrIo (part 2)
https://youtu.be/psUdKVUotIo (part 3)


Подключено шрифты


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Client ID project/taskcluster/tc-github/production-2 does not have sufficient scopes and is missing the following scopes:

```
queue:route:tc-treeherder.v2.fenix.70bcf00d4898f3c1ca188e6ff2f14b0058c00d5d
```

This request requires the client to satisfy the following scope expression:

```
{
  "AllOf": [
    "assume:repo:github.com/rpappalax/fenix:branch:homescreen-test-update",
    "queue:route:statuses",
    "queue:route:tc-treeherder.v2.fenix.70bcf00d4898f3c1ca188e6ff2f14b0058c00d5d",
    {
      "AnyOf": [
        {
          "AllOf": [
            "queue:scheduler-id:taskcluster-github",
            {
              "AnyOf": [
                "queue:create-task:highest:aws-provisioner-v1/mobile-1-decision"
              ]
            }
          ]
        }
      ]
    }
  ]
}
```

---

* method:     createTask
* errorCode:  InsufficientScopes
* statusCode: 403
* time:       2019-07-03T20:32:41.704Z

</details>


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Client ID project/taskcluster/tc-github/production-2 does not have sufficient scopes and is missing the following scopes:

```
queue:route:tc-treeherder.v2.fenix.21a61806ae2178503fdd911e9415d5079dc9401e
```

This request requires the client to satisfy the following scope expression:

```
{
  "AllOf": [
    "assume:repo:github.com/rpappalax/fenix:branch:homescreen-test-update",
    "queue:route:statuses",
    "queue:route:tc-treeherder.v2.fenix.21a61806ae2178503fdd911e9415d5079dc9401e",
    {
      "AnyOf": [
        {
          "AllOf": [
            "queue:scheduler-id:taskcluster-github",
            {
              "AnyOf": [
                "queue:create-task:highest:aws-provisioner-v1/mobile-1-decision"
              ]
            }
          ]
        }
      ]
    }
  ]
}
```

---

* method:     createTask
* errorCode:  InsufficientScopes
* statusCode: 403
* time:       2019-07-03T20:33:34.594Z

</details>


Wk 1 Day 3 homework


why rebrand it?


not sure what `>>>` gets compiled to in java, but using it would avoid the mask in processNibble.


same


TeamCity Bvcms / Build [Build 1450](https://builds.tpsdb.com/viewLog.html?buildId=7125&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Tests failed: 5 (5 new), passed: 33 Build time: 00:18:04
### Failed tests
```
WebApp Collection (4): IntegrationTests.Areas.Manage.AccountTests.MyData_User_Logon_Success_Test: OpenQA.Selenium.NoSuchElementException : no such element: Unable to locate element: {"method":"css selector","selector":"#inputEmail"}
  (Session info: chrome=75.0.3770.100)
   at OpenQA.Selenium.Remote.RemoteWebDriver.UnpackAndThrowOnError(Response errorResponse)
   at OpenQA.Selenium.Remote.RemoteWebDriver.Execute(String driverCommandToExecute, Dictionary`2 parameters)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(String mechanism, String value)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElementByCssSelector(String cssSelector)
   at OpenQA.Selenium.By.<>c__DisplayClass23_0.<CssSelector>b__0(ISearchContext context)
   at OpenQA.Selenium.By.FindElement(ISearchContext context)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(By by)
   at IntegrationTests.Support.FeatureTestBase.WaitForElement(String css, Int32 maxWaitTimeInSeconds) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\FeatureTestBase.cs:line 399
   at IntegrationTests.Support.AccountTestBase.Login(String withPassword) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\AccountTestBase.cs:line 80
   at IntegrationTests.Areas.Manage.AccountTests.MyData_User_Logon_Success_Test() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Manage\AccountTests.cs:line 29

WebApp Collection (4): IntegrationTests.Areas.Manage.AccountTests.MyData_User_ChangePassword_Test: OpenQA.Selenium.NoSuchElementException : no such element: Unable to locate element: {"method":"css selector","selector":"#inputEmail"}
  (Session info: chrome=75.0.3770.100)
   at OpenQA.Selenium.Remote.RemoteWebDriver.UnpackAndThrowOnError(Response errorResponse)
   at OpenQA.Selenium.Remote.RemoteWebDriver.Execute(String driverCommandToExecute, Dictionary`2 parameters)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(String mechanism, String value)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElementByCssSelector(String cssSelector)
   at OpenQA.Selenium.By.<>c__DisplayClass23_0.<CssSelector>b__0(ISearchContext context)
   at OpenQA.Selenium.By.FindElement(ISearchContext context)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(By by)
   at IntegrationTests.Support.FeatureTestBase.WaitForElement(String css, Int32 maxWaitTimeInSeconds) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\FeatureTestBase.cs:line 399
   at IntegrationTests.Support.AccountTestBase.Login(String withPassword) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\AccountTestBase.cs:line 80
   at IntegrationTests.Areas.Manage.AccountTests.MyData_User_ChangePassword_Test() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Manage\AccountTests.cs:line 54

WebApp Collection (4): IntegrationTests.Areas.Manage.AccountTests.MyData_User_Logout_Success_Test: OpenQA.Selenium.NoSuchElementException : no such element: Unable to locate element: {"method":"css selector","selector":"#inputEmail"}
  (Session info: chrome=75.0.3770.100)
   at OpenQA.Selenium.Remote.RemoteWebDriver.UnpackAndThrowOnError(Response errorResponse)
   at OpenQA.Selenium.Remote.RemoteWebDriver.Execute(String driverCommandToExecute, Dictionary`2 parameters)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(String mechanism, String value)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElementByCssSelector(String cssSelector)
   at OpenQA.Selenium.By.<>c__DisplayClass23_0.<CssSelector>b__0(ISearchContext context)
   at OpenQA.Selenium.By.FindElement(ISearchContext context)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(By by)
   at IntegrationTests.Support.FeatureTestBase.WaitForElement(String css, Int32 maxWaitTimeInSeconds) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\FeatureTestBase.cs:line 399
   at IntegrationTests.Support.AccountTestBase.Login(String withPassword) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\AccountTestBase.cs:line 80
   at IntegrationTests.Areas.Manage.AccountTests.MyData_User_Logout_Success_Test() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Manage\AccountTests.cs:line 42

WebApp Collection (4): IntegrationTests.Areas.Manage.AccountTests.MyData_User_Logon_Fail_Test: OpenQA.Selenium.NoSuchElementException : no such element: Unable to locate element: {"method":"css selector","selector":"#inputEmail"}
  (Session info: chrome=75.0.3770.100)
   at OpenQA.Selenium.Remote.RemoteWebDriver.UnpackAndThrowOnError(Response errorResponse)
   at OpenQA.Selenium.Remote.RemoteWebDriver.Execute(String driverCommandToExecute, Dictionary`2 parameters)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(String mechanism, String value)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElementByCssSelector(String cssSelector)
   at OpenQA.Selenium.By.<>c__DisplayClass23_0.<CssSelector>b__0(ISearchContext context)
   at OpenQA.Selenium.By.FindElement(ISearchContext context)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(By by)
   at IntegrationTests.Support.FeatureTestBase.WaitForElement(String css, Int32 maxWaitTimeInSeconds) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\FeatureTestBase.cs:line 399
   at IntegrationTests.Support.AccountTestBase.Login(String withPassword) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\AccountTestBase.cs:line 80
   at IntegrationTests.Areas.Manage.AccountTests.MyData_User_Logon_Fail_Test() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Manage\AccountTests.cs:line 17

WebApp Collection (4): IntegrationTests.Areas.Manage.AccountTests.MyData_User_ForgotPassword_Test: OpenQA.Selenium.NoSuchElementException : no such element: Unable to locate element: {"method":"css selector","selector":"#inputEmail"}
  (Session info: chrome=75.0.3770.100)
   at OpenQA.Selenium.Remote.RemoteWebDriver.UnpackAndThrowOnError(Response errorResponse)
   at OpenQA.Selenium.Remote.RemoteWebDriver.Execute(String driverCommandToExecute, Dictionary`2 parameters)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(String mechanism, String value)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElementByCssSelector(String cssSelector)
   at OpenQA.Selenium.By.<>c__DisplayClass23_0.<CssSelector>b__0(ISearchContext context)
   at OpenQA.Selenium.By.FindElement(ISearchContext context)
   at OpenQA.Selenium.Remote.RemoteWebDriver.FindElement(By by)
   at IntegrationTests.Support.FeatureTestBase.WaitForElement(String css, Int32 maxWaitTimeInSeconds) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\FeatureTestBase.cs:line 399
   at IntegrationTests.Areas.Manage.AccountTests.MyData_User_ForgotPassword_Test() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Manage\AccountTests.cs:line 87

```


TeamCity Bvcms / Build [Build 1451](https://builds.tpsdb.com/viewLog.html?buildId=7126&buildTypeId=Bvcms_Build) is now running


only needed change here


Successfully aliased the URL <https://effector-7hbi2jjub.now.sh> to the following aliases.

* https://effector.now.sh
* https://effector.zerobias.now.sh
* https://effector-git-master.zerobias.now.sh


@woliver01 I’m not sure what you mean by create a new program. The changes were to update the Make_formats_rcasd.sas program, right? Doesn’t that program already exist?


TeamCity Bvcms / Build [Build 1452](https://builds.tpsdb.com/viewLog.html?buildId=7127&buildTypeId=Bvcms_Build) is now running


TeamCity Bvcms / Build [Build 1451](https://builds.tpsdb.com/viewLog.html?buildId=7126&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Error while applying patch Build time: 00:01:04


TeamCity Bvcms / Build [Build 1452](https://builds.tpsdb.com/viewLog.html?buildId=7127&buildTypeId=Bvcms_Build) outcome was **UNKNOWN**
Summary: Canceled (Error while applying patch; cannot find commit bd0eddb92e9e94b2ef5dd049ede5679b44493cbb in the https://bvcms-teamcity@github.com/bvcms/bvcms repository, possible reason: refs/pull/569/merge branch was updated and the commit selected for the... Build time: 00:00:16


![](https://github.trello.services/images/mini-trello-icon.png) [refactor ui](https://trello.com/c/dbjc0GNS/22-refactor-ui)


TeamCity Bvcms / Build [Build 1453](https://builds.tpsdb.com/viewLog.html?buildId=7128&buildTypeId=Bvcms_Build) is now running


I know. It is _also_ a factor in bad performance (memory consumption).

You don't have to be beat me over the head about it.


When I pulled in the master branch it gives me the notice the docs have changed and I committed this change. Perhaps this is because I need to pull in the docs sub module first too?


Copy of this build can be found at
https://builds.myetherwallet.com/build/6f2e86e116331928b872fbb5b03b715fc6c93c70/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmStugCYp9NAxFmixGj7vcpZMe3FQxyqfJYxKjKwBVwB7y
                       Virus Total analysis
                       https://www.virustotal.com/file/20a416e4e88ff9aaa591623044dbe3d6114099fce4d9bf09605b7c85b1f7a26d/analysis/1562186203/


Duplicate row of value in hours


Основная папка


`vowels = {}`


are you sure that lineage-sdk is even cloned with havoc?


@ptatian Yes but if I simply remove the changes I made, save the program, re-type the changes, and save again, the desktop app doesn't recognize them as changes. Do you mean remove my changes from the master, save the program, and then recreate the changes from the branch?


Все равно гитхаб показывает что в конце файла нет `\n`


WTF


You are right. It ist just copy paste from jsoup. Maybe we should keep it this way to be able easier compare to newer releases of jsoup if that ever gets changed.


На будущее - вообще не надо расширять core-классы. Это ведет к непониманию другими разработчиками происходящего.


Saweet!


Missing a "finished successfully" check.

```C#
            if (i == utf8FormattedNumber.Length)
            {
                return;
            }
```


CI unknown has built darwin x64 version of the Test Runner. You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and `cypress.tgz` url instead of the version.

    ```
    export CYPRESS_INSTALL_BINARY=https://path-to-test-runner-binary/cypress.zip
    npm install https://path-to-test-runner-binary/cypress.zip
    ```


Pet Express is Sri Lanka's leading IATA & IPATA certified Pet Travel specialist & worldwide service provider for relocating pets all around the world We are a professional Pet Relocation agent based in Colombo who can offer you personalized door-to-door international pet transport services in the safest and the most comfortable way. Pet Express can be your one-stop international pet travel agent for your pets moving to / from Sri Lanka. We at Pet Express, always plan your pet's relocation process carefully and meticulously. Our pet relocation specialists have helped hundreds of pet owners to relocate their beloved pets to reach their new homes. Pet Express has unsurpassed experience in shipping pets to / from Sri Lanka, in to many different countries, and our specialist team will ensure you, that all of your Pet's international travel requirements are met accordingly and your Pet's journey will be planned smoothly and stress-free.
<a href="https://www.petexpress.lk/">Importing Pets in to Sri Lanka<a>


https://youtu.be/cUxCFOEJNm4 (part 1)
https://youtu.be/q_bMk5WGkXs (part 2)
https://youtu.be/lWbLBvGaNjk (part 3)


Missing an "if this was the last character it's invalid" check

```C#
                if (utf8FormattedNumber.Length <= i)
                {
                    throw new ArgumentException(SR.RequiredDigitNotFoundEndOfData, nameof(utf8FormattedNumber));
                }
```


TeamCity Bvcms / Build [Build 1453](https://builds.tpsdb.com/viewLog.html?buildId=7128&buildTypeId=Bvcms_Build) outcome was **SUCCESS**
Summary: Tests passed: 19 Build time: 00:09:50


@cyberium not so sure how, but this commit seems to be the cause of the loot issue I told you about some times ago on Discord.

### How to replicate
- create a raid group with at least two players (two real players or bots work also)
- keep default "group loot"
- `.tele onyxia` and enter the instance (you may need to add Drakefire Amulet in each player inventory)
- engage and kill the first two trash NPCs (not sure if you need to engage both at the same time or not)
- notice that even though both players have looted the corpses, at least one of the player can still open the (now empty) loot window again for each corpse, and again and again until the mobs are skinned/despawned

### How it should be
Once the corpse are fully looted, the loot window should not longer be available

Strangely, I was not able to replicate this in open world though I can replicate it almost every time in Onyxia instance. Also, I'm unsure if fighting skinnable NPCs is a prerequisite to trigger the issue.

I tried to revert this commit and was no longer able to replicate the issue.


sorry im new amatir this GitHub , thanks you your permission. step step by i do it
thanks..


Copy of this build can be found at
https://builds.myetherwallet.com/build/2533369549206dda39dfb48046487e93faf8d020/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmR126c1NMTBAhjYTiDJknXCwUBA5nVv3dSVAQ2WsKfoYX
                       Virus Total analysis
                       https://www.virustotal.com/file/68aa78083a2a267c4af67cd7d4341d3b0edda9ad39b4a485a270b841ad6454de/analysis/1562186833/


Who did this???