[inst/unitTests/test_convertMsp2Spectra.R:1:35:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L1) *style:* **Put spaces around all infix operators.**
```r
data("convertMsp2Spectra", package="MetCirc")
                                 ~^~
```
[inst/unitTests/test_convertMsp2Spectra.R:2:30:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L2) *style:* **Put spaces around all infix operators.**
```r
spl <- convertMsp2Spectra(msp=msp2spectra)
                            ~^~
```
[inst/unitTests/test_convertMsp2Spectra.R:4:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L4) *style:* **Variable and function names should not use underscores.**
```r
test_convertMsp2Spectra <- function() {
^~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:4:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L4) *style:* **Variable and function name style should be snake_case.**
```r
test_convertMsp2Spectra <- function() {
^~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:5:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L5) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(length(spl), 22)
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:5:24:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L5) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(length(spl), 22)
                       ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:6:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
    checkEquals(is(spl), c("Spectra", "SimpleList", "List", "Vector", "list_OR_List", "Annotated", "vector_OR_Vector"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:6:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L6) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(is(spl), c("Spectra", "SimpleList", "List", "Vector", "list_OR_List", "Annotated", "vector_OR_Vector"))
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:6:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L6) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(is(spl), c("Spectra", "SimpleList", "List", "Vector", "list_OR_List", "Annotated", "vector_OR_Vector"))
                   ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:7:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L7) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(dim(spl@elementMetadata), c(22, 1))
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:7:21:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L7) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(dim(spl@elementMetadata), c(22, 1))
                    ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:8:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L8) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.character(spl@elementMetadata$names))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:8:28:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L8) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.character(spl@elementMetadata$names))
                           ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:9:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L9) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(spl@elementType, "Spectrum")
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:9:17:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L9) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(spl@elementType, "Spectrum")
                ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:10:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L10) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(spl@metadata, list())
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:10:17:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L10) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(spl@metadata, list())
                ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:11:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L11) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.list(spl@listData))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:11:23:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L11) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.list(spl@listData))
                      ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:12:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L12) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(is(spl@listData[[1]]), c("Spectrum2", "Spectrum", "Versioned"))
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:12:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L12) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(is(spl@listData[[1]]), c("Spectrum2", "Spectrum", "Versioned"))
                   ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:13:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L13) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.numeric(spl@listData[[1]]@intensity))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:13:26:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L13) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.numeric(spl@listData[[1]]@intensity))
                         ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:14:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L14) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.numeric(spl@listData[[1]]@mz))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:14:26:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L14) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.numeric(spl@listData[[1]]@mz))
                         ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:15:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L15) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.numeric(spl@listData[[1]]@precursorMz))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:15:26:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L15) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.numeric(spl@listData[[1]]@precursorMz))
                         ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:18:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_convertMsp2Spectra.R#L18) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/unitTests/test_linkDf.R:3:24:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L3) *style:* **Put spaces around all infix operators.**
```r
data("spectra", package="MetCirc")
                      ~^~
```
[inst/unitTests/test_linkDf.R:4:24:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
## use only a selection
                       ^
```
[inst/unitTests/test_linkDf.R:6:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L6) *style:* **Variable and function names should not use underscores.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:6:67:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L6) *style:* **Commas should always have a space after.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
                                                                  ^
```
[inst/unitTests/test_linkDf.R:7:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L7) *style:* **Variable and function name style should be snake_case.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:7:53:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L7) *style:* **Put spaces around all infix operators.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                   ~^~
```
[inst/unitTests/test_linkDf.R:7:75:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                                          ^~
```
[inst/unitTests/test_linkDf.R:9:56:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L9) *style:* **Put spaces around all infix operators.**
```r
inds <- MetCirc:::spectraCond(spectra_tissue, condition=condition)
                                                      ~^~
```
[inst/unitTests/test_linkDf.R:10:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L10) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
^~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:10:40:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L10) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                       ^
```
[inst/unitTests/test_linkDf.R:10:41:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L10) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                        ^~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:11:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L11) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- inds_match[!is.na(inds_match)]; x[inds_match]})
^~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:12:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L12) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- lapply(seq_along(inds_match),
^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:12:43:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
inds_cond <- lapply(seq_along(inds_match),
                                          ^
```
[inst/unitTests/test_linkDf.R:15:53:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L15) *style:* **Put spaces around all infix operators.**
```r
            paste(condition[x], inds_match[[x]], sep="_")
                                                   ~^~
```
[inst/unitTests/test_linkDf.R:18:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L18) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- unique(unlist(inds_cond))
^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:23:29:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L23) *style:* **Commas should always have a space after.**
```r
ndps <- as.numeric(link0df[,"similarity"])
                            ^
```
[inst/unitTests/test_linkDf.R:25:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L25) *style:* **Variable and function names should not use underscores.**
```r
test_createLink0df <- function() {
^~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:25:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L25) *style:* **Variable and function name style should be snake_case.**
```r
test_createLink0df <- function() {
^~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:26:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L26) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(dim(link0df)[2], 5)
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:26:21:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L26) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkEquals(dim(link0df)[2], 5)
                    ^~~~~~~
```
[inst/unitTests/test_linkDf.R:27:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L27) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.data.frame(link0df))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:27:29:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L27) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkTrue(is.data.frame(link0df))
                            ^~~~~~~
```
[inst/unitTests/test_linkDf.R:29:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
        colnames(link0df) == c("group1", "spectrum1", "group2", "spectrum2", "similarity")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:31:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L31) *style:* **Lines should not be more than 80 characters.**
```r
        all(unique(c(as.character(link0df$group1), as.character(link0df$group2))) %in% unique(group)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:33:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L33) *style:* **Lines should not be more than 80 characters.**
```r
        all(unique(c(as.character(link0df$name1), as.character(link0df$name2))) %in% unique(inds_cond)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:34:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L34) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(all(0 < ndps & ndps <= 1))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:34:23:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L34) *warning:* **no visible binding for global variable ‘ndps’, Did you mean 'nls'?**
```r
    checkTrue(all(0 < ndps & ndps <= 1))
                      ^~~~
```
[inst/unitTests/test_linkDf.R:34:23:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L34) *warning:* **no visible binding for global variable ‘ndps’, Did you mean 'nls'?**
```r
    checkTrue(all(0 < ndps & ndps <= 1))
                      ^~~~
```
[inst/unitTests/test_linkDf.R:35:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L35) *style:* **Variable and function names should not use underscores.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:35:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:47:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                              ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:63:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                                              ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:38:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L38) *style:* **Variable and function names should not use underscores.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:38:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L38) *style:* **Variable and function name style should be snake_case.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:47:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                              ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:63:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                                              ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:41:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L41) *style:* **Variable and function names should not use underscores.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:41:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L41) *style:* **Variable and function name style should be snake_case.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:47:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                              ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:63:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                                              ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *style:* **Variable and function name style should be snake_case.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
    ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:22:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *warning:* **no visible global function definition for ‘compare_Spectra’**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                     ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:38:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                     ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:62:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *style:* **Put spaces around all infix operators.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                                            ~^~
```
[inst/unitTests/test_linkDf.R:44:63:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *warning:* **no visible binding for global variable ‘normalizeddotproduct’**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                                              ^~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:84:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L44) *style:* **Trailing whitespace is superfluous.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                                                                ^~
```
[inst/unitTests/test_linkDf.R:45:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:29:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
                            ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:58:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
                                                         ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:74:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
                                                                         ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:50:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L50) *style:* **Variable and function names should not use underscores.**
```r
test_thresholdLinkDf <- function() {
^~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:50:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
test_thresholdLinkDf <- function() {
^~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:51:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:51:21:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
                    ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:51:37:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
                                    ^~~~~~~
```
[inst/unitTests/test_linkDf.R:51:37:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
                                    ^~~~~~~
```
[inst/unitTests/test_linkDf.R:52:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L52) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(similarityMat, 0, 1))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:52:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L52) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(similarityMat, 0, 1))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:52:36:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L52) *warning:* **no visible binding for global variable ‘similarityMat’**
```r
    checkException(thresholdLinkDf(similarityMat, 0, 1))
                                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:53:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L53) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(similarityMat, 0.6, 0.5))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:53:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L53) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(similarityMat, 0.6, 0.5))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:53:36:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L53) *warning:* **no visible binding for global variable ‘similarityMat’**
```r
    checkException(thresholdLinkDf(similarityMat, 0.6, 0.5))
                                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:54:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L54) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(link0df, 1.05, 1.1))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:54:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L54) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(link0df, 1.05, 1.1))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:54:36:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L54) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkException(thresholdLinkDf(link0df, 1.05, 1.1))
                                   ^~~~~~~
```
[inst/unitTests/test_linkDf.R:56:52:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L56) *style:* **Trailing whitespace is superfluous.**
```r
        dim(thresholdLinkDf(link0df, 0.2, 1))[1] >=
                                                   ^
```
[inst/unitTests/test_linkDf.R:58:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L58) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(link0df, 0.9, 0.1))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:58:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L58) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(link0df, 0.9, 0.1))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:58:36:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L58) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkException(thresholdLinkDf(link0df, 0.9, 0.1))
                                   ^~~~~~~
```
[inst/unitTests/test_linkDf.R:59:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L59) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(nrow(thresholdLinkDf(link0df, 0.999, 1)) == 1)
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:59:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L59) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkTrue(nrow(thresholdLinkDf(link0df, 0.999, 1)) == 1)
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:59:36:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L59) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkTrue(nrow(thresholdLinkDf(link0df, 0.999, 1)) == 1)
                                   ^~~~~~~
```
[inst/unitTests/test_linkDf.R:64:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
tLinkDf1 <- thresholdLinkDf(link0df, 0.9, 1)
^~~~~~~~
```
[inst/unitTests/test_linkDf.R:65:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L65) *style:* **Variable and function name style should be snake_case.**
```r
tLinkDf2 <- createLinkDf(similarityMat, spectra_tissue, condition, 0.9, 1)
^~~~~~~~
```
[inst/unitTests/test_linkDf.R:67:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L67) *style:* **Variable and function names should not use underscores.**
```r
test_createLinkDf <- function() {
^~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:67:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L67) *style:* **Variable and function name style should be snake_case.**
```r
test_createLinkDf <- function() {
^~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:68:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L68) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(identical(tLinkDf1, tLinkDf2))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:68:25:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L68) *warning:* **no visible binding for global variable ‘tLinkDf1’**
```r
    checkTrue(identical(tLinkDf1, tLinkDf2))
                        ^~~~~~~~
```
[inst/unitTests/test_linkDf.R:68:35:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L68) *warning:* **no visible binding for global variable ‘tLinkDf2’**
```r
    checkTrue(identical(tLinkDf1, tLinkDf2))
                                  ^~~~~~~~
```
[inst/unitTests/test_linkDf.R:73:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L73) *style:* **Variable and function name style should be snake_case.**
```r
cutLDFInter <- cutLinkDf(tLinkDf1, type="inter")
^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:73:40:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L73) *style:* **Put spaces around all infix operators.**
```r
cutLDFInter <- cutLinkDf(tLinkDf1, type="inter")
                                      ~^~
```
[inst/unitTests/test_linkDf.R:74:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L74) *style:* **Variable and function name style should be snake_case.**
```r
cutLDFIntra <- cutLinkDf(tLinkDf1, type="intra")
^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:74:40:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L74) *style:* **Put spaces around all infix operators.**
```r
cutLDFIntra <- cutLinkDf(tLinkDf1, type="intra")
                                      ~^~
```
[inst/unitTests/test_linkDf.R:76:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L76) *style:* **Variable and function names should not use underscores.**
```r
test_cutLinkDf <- function() {
^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:76:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L76) *style:* **Variable and function name style should be snake_case.**
```r
test_cutLinkDf <- function() {
^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:80:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L80) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(cutLinkDf(tLinkDf1, type = "foo"))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:80:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L80) *warning:* **no visible global function definition for ‘cutLinkDf’**
```r
    checkException(cutLinkDf(tLinkDf1, type = "foo"))
                   ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:80:30:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L80) *warning:* **no visible binding for global variable ‘tLinkDf1’**
```r
    checkException(cutLinkDf(tLinkDf1, type = "foo"))
                             ^~~~~~~~
```
[inst/unitTests/test_linkDf.R:82:49:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L82) *style:* **Trailing whitespace is superfluous.**
```r
        all(unlist(lapply(1:dim(cutLDFInter)[1],
                                                ^
```
[inst/unitTests/test_linkDf.R:83:53:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L83) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFInter[x,1] != cutLDFInter[x,3])))
                                                    ^
```
[inst/unitTests/test_linkDf.R:83:73:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L83) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFInter[x,1] != cutLDFInter[x,3])))
                                                                        ^
```
[inst/unitTests/test_linkDf.R:86:49:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
        all(unlist(lapply(1:dim(cutLDFIntra)[1],
                                                ^
```
[inst/unitTests/test_linkDf.R:87:53:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L87) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFIntra[x,1] == cutLDFIntra[x,3])))
                                                    ^
```
[inst/unitTests/test_linkDf.R:87:73:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_linkDf.R#L87) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFIntra[x,1] == cutLDFIntra[x,3])))
                                                                        ^
```
[inst/unitTests/test_plottingFunctions.R:5:24:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L5) *style:* **Put spaces around all infix operators.**
```r
data("spectra", package="MetCirc")
                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:6:24:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
## use only a selection
                       ^
```
[inst/unitTests/test_plottingFunctions.R:8:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L8) *style:* **Variable and function names should not use underscores.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
^~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:8:67:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L8) *style:* **Commas should always have a space after.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
                                                                  ^
```
[inst/unitTests/test_plottingFunctions.R:9:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L9) *style:* **Variable and function name style should be snake_case.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
^~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:9:53:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L9) *style:* **Put spaces around all infix operators.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:9:75:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L9) *style:* **Trailing whitespace is superfluous.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                                          ^~
```
[inst/unitTests/test_plottingFunctions.R:11:56:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L11) *style:* **Put spaces around all infix operators.**
```r
inds <- MetCirc:::spectraCond(spectra_tissue, condition=condition)
                                                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:12:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L12) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:12:40:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L12) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                       ^
```
[inst/unitTests/test_plottingFunctions.R:12:41:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L12) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                        ^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:13:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L13) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- inds_match[!is.na(inds_match)]; x[inds_match]})
^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:14:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L14) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- lapply(seq_along(inds_match),
^~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:14:43:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
inds_cond <- lapply(seq_along(inds_match),
                                          ^
```
[inst/unitTests/test_plottingFunctions.R:17:53:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L17) *style:* **Put spaces around all infix operators.**
```r
            paste(condition[x], inds_match[[x]], sep="_")
                                                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:20:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L20) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- unique(unlist(inds_cond))
^~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:24:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:24:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Variable and function name style should be snake_case.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
^~~~~~
```
[inst/unitTests/test_plottingFunctions.R:24:71:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Put spaces around all infix operators.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
                                                                     ~^~
```
[inst/unitTests/test_plottingFunctions.R:24:83:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Put spaces around all infix operators.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
                                                                                ~^~
```
[inst/unitTests/test_plottingFunctions.R:28:61:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
circos.par(gap.degree = 0, cell.padding = c(0.0, 0, 0.0, 0),
                                                            ^
```
[inst/unitTests/test_plottingFunctions.R:30:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L30) *style:* **Variable and function names should not use underscores.**
```r
test_plotCircos <- function() {
^~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:30:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
test_plotCircos <- function() {
^~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:31:58:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L31) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(inds_cond, NULL, initialize=TRUE,
                                                        ~^~
```
[inst/unitTests/test_plottingFunctions.R:31:64:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
    checkException(plotCircos(inds_cond, NULL, initialize=TRUE,
                                                               ^
```
[inst/unitTests/test_plottingFunctions.R:32:21:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:40:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:57:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                       ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:70:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                    ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:76:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                           ^
```
[inst/unitTests/test_plottingFunctions.R:33:18:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L33) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2))
                ~^~
```
[inst/unitTests/test_plottingFunctions.R:33:32:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L33) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2))
                              ~^~
```
[inst/unitTests/test_plottingFunctions.R:33:51:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L33) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2))
                                                 ~^~
```
[inst/unitTests/test_plottingFunctions.R:34:60:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L34) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(groupname, linkDf, initialize=TRUE,
                                                          ~^~
```
[inst/unitTests/test_plottingFunctions.R:34:66:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L34) *style:* **Trailing whitespace is superfluous.**
```r
    checkException(plotCircos(groupname, linkDf, initialize=TRUE,
                                                                 ^
```
[inst/unitTests/test_plottingFunctions.R:35:21:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:40:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:57:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                       ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:70:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                    ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:76:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Trailing whitespace is superfluous.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                           ^
```
[inst/unitTests/test_plottingFunctions.R:36:18:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L36) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2)) ## names are different
                ~^~
```
[inst/unitTests/test_plottingFunctions.R:36:32:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L36) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2)) ## names are different
                              ~^~
```
[inst/unitTests/test_plottingFunctions.R:36:51:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L36) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2)) ## names are different
                                                 ~^~
```
[inst/unitTests/test_plottingFunctions.R:37:5:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L37) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(plotCircos(featureNames=TRUE))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:37:20:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L37) *warning:* **no visible global function definition for ‘plotCircos’**
```r
    checkException(plotCircos(featureNames=TRUE))
                   ^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:37:43:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L37) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(featureNames=TRUE))
                                         ~^~
```
[inst/unitTests/test_plottingFunctions.R:38:65:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L38) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(inds_cond, linkDf, cexFeatureNames=0.3,
                                                               ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:1:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Lines should not be more than 80 characters.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:39:19:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                 ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:38:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                    ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:57:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                                       ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:74:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                                                        ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:81:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Trailing whitespace is superfluous.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                                                                ^
```
[inst/unitTests/test_plottingFunctions.R:40:14:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
            ~^~
```
[inst/unitTests/test_plottingFunctions.R:40:30:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
                            ~^~
```
[inst/unitTests/test_plottingFunctions.R:40:50:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
                                                ~^~
```
[inst/unitTests/test_plottingFunctions.R:40:62:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
                                                            ~^~
```
[inst/unitTests/test_plottingFunctions.R:41:65:](https://github.com/tnaake/MetCirc/blob/5c4dcc768a6fa43ce7df594a361995d9a5210255/inst/unitTests/test_plottingFunctions.R#L41) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(inds_cond, linkDf, cexFeatureNames=0.3,
                                                               ~^~
```


Thanks - saves me writing emails for the BSD dual licensing effort.


Successfully aliased the URL <https://csblogs-rss-rkcfaexaln.now.sh> to the following alias:

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I have changed that, thanks a lot!


Found spelling mistakes in documentation file automatic/REWEIGHT_WHAM.txt<<
 multinomial jth jth kth probablity minimise jth
 Found spelling mistakes in documentation file automatic/WHAM_HISTOGRAM.txt<<
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Successfully aliased the URL <https://csblogs-rss-sgrpogxjdi.now.sh> to the following alias:

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* https://frontend-git-master.ian84be.now.sh


@JuliaRegistrator register()


Registration pull request created: [JuliaRegistries/General/3084](https://github.com/JuliaRegistries/General/pull/3084)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.4.0 -m "<description of version>" b92225076aaa47985ae3e94dd1dd90d4df0c3dc7
git push origin v0.4.0
```


l looks a lot like 1, and is discouraged as a variable name


@mhinz thank you so much for this, you made my day!


PEP 8: you should have spaces around your operators


The correct Sourcehut CI address is: https://builds.sr.ht


Successfully aliased the URL <https://slow-zone-m89d83ykp.now.sh> to the following aliases:

* https://slow-zone.now.sh
* https://slow-zone.banterability.now.sh
* https://slow-zone-git-master.banterability.now.sh


Successfully aliased the URL <https://psysite-ce54yp715.now.sh> to the following aliases:

* https://psysite.neurosoup.now.sh
* https://psysite-git-master.neurosoup.now.sh


Dear Poggit user,

This is an automatic message from Poggit-CI. Poggit-CI was triggered by this commit, but failed to create builds due to the following error:

```
Error parsing .poggit.yml: Level 0: yaml_parse(): scanning error
encountered during parsing: mapping values are not allowed in this context
(line 3, column 9) in /poggit/src/poggit/webhook/PushHandler.php#85
```

As a result, no builds could be created from this commit. More details might be available for repo admins at [the webhook delivery response log](https://github.com/davidlouis101/TutorialPlugin/settings/hooks) — see the webhook starting with `https://poggit.pmmp.io/webhooks.gh.repo` and look for the delivery with ID `ec9cab3a-cb3e-11e9-8642-9e3aee91da84`.

Shall you need any assistance, you may contact us on [on Discord](https://discord.gg/NgHf9jt), or more publicly, [on GitHub](https://github.com/poggit/support/issues). Commenting on this commit directly will **not** notify any Poggit staff.

Regards,
Poggit Bot (@poggit-bot)
The official Poggit automation account


Deployment failed with the following error:

~~~
The chosen alias "csb-kj4w6-qvkimmdhu.now.sh" is a deployment URL.
~~~


See #310


Successfully aliased the URL <https://website-ncmjwdi0p.now.sh> to the following aliases:

* https://keplersj.com
* https://website.keplersj.now.sh
* https://website-git-master.keplersj.now.sh


Ok this wersion accepted on 30.08 at 19.00


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1442-mtcv.pantheonsite.io/)

Created multidev environment [ci-1442](https://dashboard.pantheon.io/sites/ad79477c-5d06-4234-b6b8-582ebeee0e5c#ci-1442) for mtcv.


Successfully aliased the URL <https://wendells-qnogpmibw.now.sh> to the following aliases:

* https://wendell.site
* https://wendells.wendellhu.now.sh
* https://wendells-git-master.wendellhu.now.sh


I'm going to break this again soon... :-|


4397-AsymPropsIZSurfaceCheck (Myoldmopar) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-UnitTestsCoverage-Debug: OK (1213 of 1213 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-43.03%25-green.png)


Dropping the long name in favor of the short name will make it harder to debug issues where plugins unexpected override tasks with new arguments.


Successfully aliased the URL <https://slow-zone-bwmrysl2e.now.sh> to the following aliases:

* https://slow-zone.now.sh
* https://slow-zone.banterability.now.sh
* https://slow-zone-git-master.banterability.now.sh


@mohamedHedi1990  Can you rename it "activity.news.shareNews.spaces.placeholder" please ?


Thank you!


excuse me sir, but Pluto is not a planet.


7174-AddSETOutput (RKStrand) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


new Gradle wrapper to 5.6.1 all final is online.. Regards


Successfully aliased the URL <https://fishmarketapp-930n1c6cz.now.sh> to the following aliases:

* https://fishmarketapp.jenipharachel.now.sh
* https://fishmarketapp-git-master.jenipharachel.now.sh


Successfully aliased the URL <https://wendells-reqtzvnsv.now.sh> to the following aliases:

* https://wendell.site
* https://wendells.wendellhu.now.sh
* https://wendells-git-master.wendellhu.now.sh


7174-AddSETOutput (RKStrand) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (9 of 9 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Successfully aliased the URL <https://csb-kj4w6-lpbgui719.now.sh> to the following aliases:

* https://garybalmforth.com
* https://csb-kj4w6.gary9.now.sh
* https://csb-kj4w6-git-master.gary9.now.sh


@ugexe That is is a weird comment. Why would I copy/paste, I might just use Zef (which I do).
I'm looking at how Zef and Panda do thing to learn which I don't see anything wrong with that.
That being said, Please specify what is copy/pasted and why you are upset?


:point_right: click here to view a full list of the events :point_left:


Successfully aliased the URL <https://mythmoncom-9kth3q2yz.now.sh> to the following aliases:

* https://mythmon.com
* https://www.mythmon.com
* https://mythmoncom.mythmon.now.sh
* https://mythmoncom-git-master.mythmon.now.sh


fix #1969


ZEIT Now cannot deploy this project to production due to following domain related issues:

 * `eth.pictures`(for alias `eth.pictures`) is not found inside your account. [Add it](https://zeit.co/dashboard/domains?action=add&domain=eth.pictures).


I'm afraid setting a value in the constructor will interfere with `merge` as there's no way to tell if the default value in `o1` must be used instead of the value from `o2`.


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/xcode11/265/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/xcode11/265/display/redirect) (on internal Jenkins) failed in stage(s) 'Install Provisioning Profiles' 🔥 : hudson.AbortException: script returned exit code 104

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/xcode11/265//console)
✅ Packages: [xamarin.ios-12.99.4.16.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11/075fa2b477a08d5a4a68544b3aeda0137d023d6d/265/package/xamarin.ios-12.99.4.16.pkg) [xamarin.mac-5.99.4.16.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11/075fa2b477a08d5a4a68544b3aeda0137d023d6d/265/package/xamarin.mac-5.99.4.16.pkg)


Successfully aliased the URL <https://informatif-92ipa9gxu.now.sh> to the following aliases:

* https://informatif.now.sh
* https://informatif.informatif-now1.now.sh
* https://informatif-git-master.informatif-now1.now.sh


Successfully aliased the URL <https://slow-zone-9q610jckp.now.sh> to the following aliases:

* https://slow-zone.now.sh
* https://slow-zone.banterability.now.sh
* https://slow-zone-git-master.banterability.now.sh


Successfully aliased the URL <https://csb-kj4w6-v8tronlci.now.sh> to the following aliases:

* https://garybalmforth.com
* https://www.garybalmforth.com
* https://csb-kj4w6.gary9.now.sh
* https://csb-kj4w6-git-master.gary9.now.sh


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 500-IDAM-258-Pull-throug](https://teamcity.nice.org.uk/viewLog.html?buildId=57703&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **FAILURE**
Summary: Will fail Build time: 00:01:45


note: "alice stop" sometimes returned before the wallet file was saved, so the toxic wallet was overwritten


Successfully aliased the URL <https://website-lpn4po2w9.now.sh> to the following aliases:

* https://website.samnaish92.now.sh
* https://website-git-master.samnaish92.now.sh


7174-AddSETOutput (RKStrand) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: Tests Failed (2252 of 2589 tests passed, 7 test warnings)

Messages:\n
 * 337 tests had: Table big diffs.
 * 3 tests had: AUD diffs.
 * 3 tests had: RDD diffs.
 * 7 tests had: Table small diffs.
 * 1 test had: MTD diffs.

Failures:\n

regression Test Summary
 * Passed: 350
 * Failed: 337

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-86.98%25-red.png)


how do it


For instance -- https://github.com/ugexe/zef/blob/e73897378b36cbf53f2ed8d98363d94bac70767d/lib/Zef/Distribution.pm6#L6-L24 just happens to be in the exact same order while you claim to act surprised someone claims it is copy+pasted. I won't get into some of the other stuff that has been copied (stuff that exists only to support backwards compat in zef and would never be written for a new project / rewrite).

When you copy someones work and do not credit it then you should not be surprised when someone calls you out on it.


Successfully aliased the URL <https://kstar-kw1m6j1z1.now.sh> to the following aliases:

* https://kstar.hanterokun.now.sh
* https://kstar-git-master.hanterokun.now.sh


Thanks for this. You probably did not need to create the wrapper functions if lambdas were allowed here.

Just a minor nitpick that the binding for `org-hugo-doom-all-subtrees-to-files` is `"A"` (upper-case) instead of `"a"`. The reason is to make `HA` be able to type more fluidly with the Shift key pressed while the users hits the H key and A key, rather than requiring the change in Shift key press state while type `Ha`.

#minorThings :)


Why **Basketball.py** is _changed?_


Successfully aliased the URL <https://zpider-docs-r34lr3im4.now.sh> to the following aliases:

* https://docs.zpider.io
* https://zpider-docs.omelhus.now.sh
* https://zpider-docs-git-master.omelhus.now.sh


Do "from . import lib" and it'll run lib's __init__.py which will mount lib. It only has to be done once in any module in the lifespan of the interpreter, but it has to be done before you can import reclaimer globally.


Successfully aliased the URL <https://jobify-gajxzlayz.now.sh> to the following aliases:

* https://jobify.ph-gomes.now.sh
* https://jobify-git-master.ph-gomes.now.sh


For the `h` binding, it is `org-hugo-export-to-md`. Compared to `org-hugo-export-wim-to-md`, that function does not try to check if the point is in a valid Hugo post subtree.


Should T default to any here?


`npm run dev` builds and serve's successfully but the JS is minified/obfuscated with an e
<img width="596" alt="Screenshot 2019-08-30 at 17 18 17" src="https://user-images.githubusercontent.com/781658/64036087-42c90700-cb4a-11e9-898e-837b23723c7d.png">
rror.


Successfully aliased the URL <https://jobify-fvorpbwfa.now.sh> to the following aliases:

* https://jobify.ph-gomes.now.sh
* https://jobify-git-master.ph-gomes.now.sh


My zigbee2mqtt add my LVS-ZB15S but I can't find any states in my Hassio connected to that switch. Is there anything that I need to add in configuration.yaml?

like am I suppose to create an mqtt switch for this device? If so how would I code it?


This is partial, so I don't think its just T


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/xcode11/266/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/xcode11/266/display/redirect) (on internal Jenkins) failed in stage(s) 'Install Provisioning Profiles' 🔥 : hudson.AbortException: script returned exit code 104

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/xcode11/266//console)
✅ Packages: [xamarin.ios-12.99.4.21.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11/f93358940146e70ec2a066250037b91f6424e3c6/266/package/xamarin.ios-12.99.4.21.pkg) [xamarin.mac-5.99.4.21.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11/f93358940146e70ec2a066250037b91f6424e3c6/266/package/xamarin.mac-5.99.4.21.pkg)


Perfect!


Successfully aliased the URL <https://zehntenzettel-i930ffkpr.now.sh> to the following aliases:

* https://zehntenzettel.now.sh
* https://zehntenzettel.toak.de
* https://geben.adventisten.at
* https://zehntenzettel.tobi.now.sh
* https://zehntenzettel-git-master.tobi.now.sh


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://p-master-edpack-archetype.pantheonsite.io/)

Created multidev environment [p-master](https://dashboard.pantheon.io/sites/8205aa31-0dde-4c46-b172-53a6aae7d18d#p-master) for edpack-archetype.


T = any


🔥 Device tests completed (Failed) on iOS on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=2990032)(iOS): [Html Report](http://xamarin-storage//jenkins-results/tests/index.html) 🔥

🔥 Tests failed catastrophically on iOS  (no summary found)


Successfully aliased the URL <https://lightkeeper-55m8qtb9u.now.sh> to the following aliases:

* https://app.lightkeeper.dev
* https://lightkeeper.lopez.now.sh
* https://lightkeeper-git-master.lopez.now.sh


Deployment failed with the following error:

~~~
Couldn't parse JSON file /tmp/bQqCg1SgnWt6XYLvthTWWflO/repo/package.json.
~~~


Copy of this build can be found at
https://www.mewbuilds.com/build/a0de9c7aa70b62246f902bc1e94f473cb58ab613/index.html
                       https://www.cloudflare-ipfs.com/ipfs/Qma6FfNZsAEbVJm2WVvuXCnnVka79mi2VaEVFEAQ4zAriu
                       Virus Total analysis
                       https://www.virustotal.com/file/563d2a49b3f8d247a33053df3649fdbbfe636f8a89852e7098bb7af3ba292511/analysis/1567182266/


I suggest to also rename the method parameter from `state` to `status` to be consistent.


I only noticed this issue when someone else complained about it. You're welcome anyway! ❤


The following doc(s) have been deployed to the [houstontim](https://houstontim-static-docs.pantheonsite.io/docs) Multidev environment:
- [/docs/timeouts](https://houstontim-static-docs.pantheonsite.io/docs/timeouts)


Shouldn't the class `StashBuildState` then also be renamed?


Well it's good to see but does it actually work as [spotify downloader](https://spotytomp3.com) ? I'm new in github


Copy of this build can be found at
https://www.mewbuilds.com/build/c9cf59e9ec3d62e19ae5dd87a41d2404c7cecaf1/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmfDd4GSDmuA2oBJeQwphWUx9WzgN44cAqGTopSkQX1Uba
                       Virus Total analysis
                       https://www.virustotal.com/file/b4bc70c083a01c44435e98f2bba5fe1b421b8b134d4af244dc6853526e8aef93/analysis/1567182369/


использовать параметр file


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1444-mtcv.pantheonsite.io/)

Created multidev environment [ci-1444](https://dashboard.pantheon.io/sites/ad79477c-5d06-4234-b6b8-582ebeee0e5c#ci-1444) for mtcv.


Successfully aliased the URL <https://docs-g8xjw9eep.zeit.sh> to the following aliases:

* https://docs.zeit.sh
* https://docs-git-master.zeit.sh


Some using this in production should check if it works, huge version jump


Successfully aliased the URL <https://fishmarketapp-3ii9wqhty.now.sh> to the following aliases:

* https://fishmarketapp.jenipharachel.now.sh
* https://fishmarketapp-git-master.jenipharachel.now.sh


Here too: `state` vs. `status`


это зачем??


Successfully aliased the URL <https://kstar-mn36hji27.now.sh> to the following aliases:

* https://kstar.hanterokun.now.sh
* https://kstar-git-master.hanterokun.now.sh


Successfully aliased the URL <https://bi-frontend-qadt6uo4w.now.sh> to the following aliases:

* https://bi-frontend.tng-knr.now.sh
* https://bi-frontend-git-develop.tng-knr.now.sh


Successfully aliased the URL <https://devdesk-front-end-jw8e47f4n.now.sh> to the following aliases:

* https://devdeskapp.lambdaschool.me
* https://devdesk-front-end.devdesk.now.sh
* https://devdesk-front-end-git-master.devdesk.now.sh


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


по порядку,
* Нужно передавать **внешне инициализированый** файл
* append  не нужно использовать в данном случае, но чтобы преобразовать в строку, можно использовать:
```java
int x = 10;
String s = String.valueOf(x);
```


Hi @MoritzMaxeiner, are you looking for openBLAS built with LAPACK support on Windows?
Also what Fortran compiler are you hoping to use? Flang, ifort, or gfortran? (or other)


Successfully aliased the URL <https://finalfrontend-dp3jhxztm.now.sh> to the following aliases:

* https://finalfrontend.ebcitron.now.sh
* https://finalfrontend-git-master.ebcitron.now.sh


Successfully aliased the URL <https://jobify-iycffgw8u.now.sh> to the following aliases:

* https://jobify.ph-gomes.now.sh
* https://jobify-git-master.ph-gomes.now.sh


@aeschli are we still using `scripts/test-release[.sh|.bat]` or can we remove it?


Was this commit deliberate?
It turns on LTI debugging by default.  It also duplicates some of the LTI settings that exist in authentication_LTI.conf in localOverrides.conf.dist.  This will definitely cause confusion because disabling $debug_LTI_parameters in authen_LTI.conf will be overwritten by the corresponding command later in localOverrides.conf.

It also sets the feedback button name to "Email WeBWorK TA" in localOverrides.conf, which I have two issues with: 1. I don't think this should be the default behaviour, and 2. I believe that there shouldn't be any uncommented overrides in the distribution of this file.  If you want it to be the default behaviour, it should go in defaults.config with a corresponding commented out suggestion in localOverrides.conf.dist.


Copy of this build can be found at
https://www.mewbuilds.com/build/fdb1362bd6abf93bb3bedd690e566d9d1b7cfe29/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmXLpgVd1qbw5eRkG5fUBDWMcDJQN3XstrjKKwZRgSacXn
                       Virus Total analysis
                       https://www.virustotal.com/file/444fb715d7c6c82be156d0954bc91fd5aa2d818c9d286d899a05a28a8cdba9c2/analysis/1567182871/


Successfully aliased the URL <https://b-tournaments-q1ocv9ec4.now.sh> to the following aliases:

* https://b-tournaments.lairjr.now.sh
* https://b-tournaments-git-master.lairjr.now.sh


The following doc(s) have been deployed to the [incrementc](https://incrementc-static-docs.pantheonsite.io/docs) Multidev environment:
- [.circleci/config.yml](https://github.com/pantheon-systems/documentation/commit/6c1383842fbe568d345a1779f3e7f12db7e2a276/.circleci/config.yml)


Successfully aliased the URL <https://operation-code-4wxcg3en8.now.sh> to the following aliases:

* https://operation-code.now.sh
* https://operation-code.operation-code.now.sh
* https://operation-code-git-master.operation-code.now.sh


Successfully aliased the URL <https://dailylistgithubio-oehq95lte.now.sh> to the following aliases:

* https://dailylist.now.sh
* https://mark.now.sh
* https://index.now.sh
* https://dailylistgithubio.shenmark201401.now.sh
* https://dailylistgithubio-git-master.shenmark201401.now.sh


Successfully aliased the URL <https://wendells-du6oad0az.now.sh> to the following aliases:

* https://wendell.site
* https://wendells.wendellhu.now.sh
* https://wendells-git-master.wendellhu.now.sh


Successfully aliased the URL <https://597w9uun3-jgv10suvb.now.sh> to the following aliases:

* https://johno.com
* https://www.johno.com
* https://git-master.johno1.now.sh


Added default configuration file


Successfully aliased the URL <https://next-portfolio-lc1m6n0o3.now.sh> to the following aliases:

* https://dangrandy.com
* https://next-portfolio.dangrt5.now.sh
* https://next-portfolio-git-master.dangrt5.now.sh


Successfully aliased the URL <https://sp-portfolio-33udc0ja4.now.sh> to the following aliases:

* https://sp-portfolio.stephenparkhum.now.sh
* https://sp-portfolio-git-master.stephenparkhum.now.sh


thanks!


Test commit.


package tictactoe;
import java.util.Scanner;
public class TicTacToe {
public static void main(String[] args) {
int num=1;
int arr[][]=new int[3][3];
char arr2[][]=new char [3][3];
System.out.println("Lets play");

for(int row=0;row<arr.length;row++)
{
for(int col=0;col<arr[row].length;col++)
{
arr[row][col]=num;
System.out.print(arr[row][col]+"   ");
num++;
}
System.out.println("");
}
Scanner input = new Scanner( System.in);
int a;
for(int x=0;x<9;x++){

switch(x){
case 0:
case 2:
case 4:
case 6:
case 8:
System.out.println("Enter Player X move");
a=input.nextInt();

for(int b=0;b<3;b++)
{
for(int c=0;c<3;c++)
{
if(arr[b][c]==a)
{
arr[b][c]='X';
arr2[b][c]=(char)arr[b][c];

System.out.print(arr2[b][c]+"   ");
}
else if(arr[b][c]!=a && arr[b][c]==arr2[b][c])
{
System.out.print(arr2[b][c]+"   ");
}

else
{
System.out.print(arr[b][c]+"   ");
}
}
System.out.println("");
}
break;

//--------------------------------------------------------------------------
case 1:
case 3:
case 5:
case 7:
System.out.println("Enter Player O move");
a=input.nextInt();
for(int b=0;b<3;b++)
{
for(int c=0;c<3;c++)
{
if(arr[b][c]==a)
{
arr[b][c]='O';
arr2[b][c]=(char)arr[b][c];

System.out.print(arr2[b][c]+"   ");
}
else if(arr[b][c]!=a && arr[b][c]==arr2[b][c])
{
System.out.print(arr2[b][c]+"   ");
}

else
{
System.out.print(arr[b][c]+"   ");
}
}
System.out.println("");
}
break;
}
if(arr[0][0]==arr[0][1] && arr[0][0]==arr[0][2] && arr[0][0]=='X'){System.out.println("Player X win");break;}
if(arr[1][0]==arr[1][1] && arr[1][0]==arr[1][2] && arr[1][0]=='X'){System.out.println("Player X win");break;}
if(arr[2][0]==arr[2][1] && arr[2][0]==arr[2][2] && arr[2][0]=='X'){System.out.println("Player X win");break;}
if(arr[0][0]==arr[1][0] && arr[0][0]==arr[2][0] && arr[0][0]=='X'){System.out.println("Player X win");break;}
if(arr[0][1]==arr[1][1] && arr[0][1]==arr[2][1] && arr[0][1]=='X'){System.out.println("Player X win");break;}
if(arr[0][2]==arr[1][2] && arr[0][2]==arr[2][2] && arr[0][2]=='X'){System.out.println("Player X win");break;}
if(arr[0][0]==arr[0][1] && arr[0][0]==arr[0][2] && arr[0][0]=='O'){System.out.println("Player O win");break;}
if(arr[1][0]==arr[1][1] && arr[1][0]==arr[1][2] && arr[1][0]=='O'){System.out.println("Player O win");break;}
if(arr[2][0]==arr[2][1] && arr[2][0]==arr[2][2] && arr[2][0]=='O'){System.out.println("Player O win");break;}
if(arr[0][0]==arr[1][0] && arr[0][0]==arr[2][0] && arr[0][0]=='O'){System.out.println("Player O win");break;}
if(arr[0][1]==arr[1][1] && arr[0][1]==arr[2][1] && arr[0][1]=='O'){System.out.println("Player O win");break;}
if(arr[0][2]==arr[1][2] && arr[0][2]==arr[2][2] && arr[0][2]=='O'){System.out.println("Player O win");break;}
}
}
}
//----------------------------------------------------------------------------------------------------------


i'm still not seeing the journal name being populated (i tried the 3 provided DOIs, clearing my cache, etc...)  is it working on your end?


Successfully aliased the URL <https://next-portfolio-6uwz79b2n.now.sh> to the following aliases:

* https://dangrandy.com
* https://next-portfolio.dangrt5.now.sh
* https://next-portfolio-git-master.dangrt5.now.sh


Jakopo hats gemacht nur falsch hochgeladen!


@schuemie -- we can put the `\begin{center}\end{center}` in conditional-pdf statements.


Successfully aliased the URL <https://devdesk-front-end-88camuk5d.now.sh> to the following aliases:

* https://devdeskapp.lambdaschool.me
* https://devdesk-front-end.devdesk.now.sh
* https://devdesk-front-end-git-master.devdesk.now.sh


Came across your code as I was looking for HASS examples, and wanted to let you know your PW is in clear text for blink...


Jakopos Arbeit... nur unter meinem Namen.


Please change the package name to org.tsofen.ourstory. Also, check that the project works inside Android Studio.


## Done
1. Front buildModules upgrade
2. BackEnd
2-1. 시퀄라이즈 도입
2-2. 서버로 데이터 보내기
2-3. 시퀄라이즈 모델과 회원가입
2-4. cors, bcrypt


Seems I forgot to mention the complaint; sorry about that. I think it would be better to leave this note in the readme-file...


https://github.com/KupynOrest/DeblurGAN/issues/145 occured in this line!
Please change code to the previous commit (and it would be appreciated, if you write more readable code!)


Welcome!!!


@imod can you explain why this was reverted?

Because of this anonymous class the following WARNING is logged:
```
WARNING: Attempt to (de-)serialize anonymous class org.jenkinsci.plugins.configfiles.GlobalConfigFiles$1 in file:[redacted]; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
```


@kbuffington , might be of interest for you and Tedgo on the foobar forums. I'll get a new release out over the weekend.


Successfully aliased the URL <https://react-leaf-55qpboo5s.now.sh> to the following aliases:

* https://react-leaf.jonathanlassen.now.sh
* https://react-leaf-git-master.jonathanlassen.now.sh


Final result of pypoll and pybank


@Anspagespace


Pipe chain should start with a raw value.


Modules should have a @moduledoc tag.


The alias `Routes.Route` is not alphabetically ordered among its group.


Nested modules could be aliased at the top of the invoking module.


@madnai jesteś pewien? wywala mi błąd jak usuwam


Successfully aliased the URL <https://wanderlust-frontend-4tti4yx6g.now.sh> to the following aliases:

* https://wanderlust.now.sh
* https://wanderlust-frontend.bw-wanderlust.now.sh
* https://wanderlust-frontend-git-master.bw-wanderlust.now.sh


Instead of creating an iterator and checking if it has next, the check and the while loop can be replaced with a single for loop.


ok


Successfully aliased the URL <https://jobify-ansg1psx9.now.sh> to the following aliases:

* https://jobify.ph-gomes.now.sh
* https://jobify-git-master.ph-gomes.now.sh