[inst/doc/demo_optimize.R:18:26:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
data(Galapagos_datatable)
                         ^
```
[inst/doc/demo_optimize.R:20:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L20) *style:* **Variable and function name style should be snake_case.**
```r
Galapagos_datalist <- DAISIE_dataprep(
^~~~~~~~~~~~~~~~~~
```
[inst/doc/demo_optimize.R:20:39:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L20) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
Galapagos_datalist <- DAISIE_dataprep(
                                      ^
```
[inst/doc/demo_optimize.R:20:39:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L20) *style:* **Trailing whitespace is superfluous.**
```r
Galapagos_datalist <- DAISIE_dataprep(
                                      ^
```
[inst/doc/demo_optimize.R:21:35:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L21) *style:* **Trailing whitespace is superfluous.**
```r
  datatable = Galapagos_datatable,
                                  ^
```
[inst/doc/demo_optimize.R:22:18:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L22) *style:* **Trailing whitespace is superfluous.**
```r
  island_age = 4,
                 ^
```
[inst/doc/demo_optimize.R:27:26:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
data(Galapagos_datatable)
                         ^
```
[inst/doc/demo_optimize.R:29:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L29) *style:* **Variable and function name style should be snake_case.**
```r
Galapagos_datalist_2types <- DAISIE_dataprep(
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/doc/demo_optimize.R:29:46:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L29) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
Galapagos_datalist_2types <- DAISIE_dataprep(
                                             ^
```
[inst/doc/demo_optimize.R:29:46:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L29) *style:* **Trailing whitespace is superfluous.**
```r
Galapagos_datalist_2types <- DAISIE_dataprep(
                                             ^
```
[inst/doc/demo_optimize.R:30:35:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L30) *style:* **Trailing whitespace is superfluous.**
```r
  datatable = Galapagos_datatable,
                                  ^
```
[inst/doc/demo_optimize.R:31:18:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
  island_age = 4,
                 ^
```
[inst/doc/demo_optimize.R:32:12:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
  M = 1000,
           ^
```
[inst/doc/demo_optimize.R:33:26:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L33) *style:* **Trailing whitespace is superfluous.**
```r
  number_clade_types = 2,
                         ^
```
[inst/doc/demo_optimize.R:34:33:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L34) *style:* **Trailing whitespace is superfluous.**
```r
  list_type2_clades = "Finches",
                                ^
```
[inst/doc/demo_optimize.R:37:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_optimize.R#L37) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/doc/demo_sim.R:27:33:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L27) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
island_replicates <- DAISIE_sim(
                                ^
```
[inst/doc/demo_sim.R:27:33:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
island_replicates <- DAISIE_sim(
                                ^
```
[inst/doc/demo_sim.R:29:26:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L29) *style:* **Trailing whitespace is superfluous.**
```r
  M = n_mainland_species,
                         ^
```
[inst/doc/demo_sim.R:45:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L45) *style:* **Variable and function name style should be snake_case.**
```r
island_replicates_K <- DAISIE_sim(
^~~~~~~~~~~~~~~~~~~
```
[inst/doc/demo_sim.R:45:35:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L45) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
island_replicates_K <- DAISIE_sim(
                                  ^
```
[inst/doc/demo_sim.R:45:35:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L45) *style:* **Trailing whitespace is superfluous.**
```r
island_replicates_K <- DAISIE_sim(
                                  ^
```
[inst/doc/demo_sim.R:46:21:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L46) *style:* **Trailing whitespace is superfluous.**
```r
  time = island_age,
                    ^
```
[inst/doc/demo_sim.R:47:26:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L47) *style:* **Trailing whitespace is superfluous.**
```r
  M = n_mainland_species,
                         ^
```
[inst/doc/demo_sim.R:52:2:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L52) *style:* **Trailing whitespace is superfluous.**
```r
)
 ^
```
[inst/doc/demo_sim.R:68:40:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L68) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
island_replicates_2types <- DAISIE_sim(
                                       ^
```
[inst/doc/demo_sim.R:68:40:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L68) *style:* **Trailing whitespace is superfluous.**
```r
island_replicates_2types <- DAISIE_sim(
                                       ^
```
[inst/doc/demo_sim.R:70:26:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L70) *style:* **Trailing whitespace is superfluous.**
```r
  M = n_mainland_species,
                         ^
```
[inst/doc/demo_sim.R:75:29:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L75) *style:* **Trailing whitespace is superfluous.**
```r
  replicates = n_replicates,
                            ^
```
[inst/doc/demo_sim.R:81:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/inst/doc/demo_sim.R#L81) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/create_test_simulation_output.R:8:31:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                              ^
```
[R/create_test_simulation_output.R:8:43:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                                          ^
```
[R/create_test_simulation_output.R:8:47:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                                              ^
```
[R/create_test_simulation_output.R:8:58:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                                                         ^
```
[R/DAISIE_area_params.R:15:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_area_params.R#L15) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
are_area_params <- function(area_params) {
^
```
[R/DAISIE_area_params.R:32:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_area_params.R#L32) *style:* **Lines should not be more than 80 characters.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:37:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_area_params.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:4:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L4) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
are_rates <- function(x) {
^
```
[R/DAISIE_check_format.R:31:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L31) *style:* **Lines should not be more than 80 characters.**
```r
  if (island_ontogeny != "const" && island_ontogeny != "linear" && island_ontogeny != "beta") return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:44:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
  if (island_ontogeny != 0 && island_ontogeny != 1 && island_ontogeny != 2) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:50:76:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L50) *style:* **Trailing whitespace is superfluous.**
```r
#' @param simulation_outputs A list with matrices and vectors of simulation
                                                                           ^
```
[R/DAISIE_check_format.R:51:27:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L51) *style:* **Trailing whitespace is superfluous.**
```r
#' produced by DAISIE_sim.
                          ^~
```
[R/DAISIE_check_format.R:57:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L57) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_check_format.R:58:51:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L58) *style:* **Trailing whitespace is superfluous.**
```r
#' expect_false(is_simulation_outputs("nonsense"))
                                                  ^
```
[R/DAISIE_check_format.R:59:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L59) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_check_format.R:60:58:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L60) *style:* **Trailing whitespace is superfluous.**
```r
#' simulation_outputs <- create_test_simulation_outputs()
                                                         ^
```
[R/DAISIE_check_format.R:65:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L65) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_check_format.R:66:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L66) *style:* **Lines should not be more than 80 characters.**
```r
    if (!"island_age" %in% names(simulation_outputs[[n_replicate]][[1]])) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:68:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L68) *style:* **Lines should not be more than 80 characters.**
```r
        !"not_present_type1" %in% names(simulation_outputs[[n_replicate]][[1]]))) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:71:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L71) *style:* **Lines should not be more than 80 characters.**
```r
    if (!"stt_all" %in% names(simulation_outputs[[n_replicate]][[1]])) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:73:7:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L73) *style:* **Commented code should be removed.**
```r
    # if (!"branching_times" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:74:7:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L74) *style:* **Commented code should be removed.**
```r
    # if (!"stac" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:75:7:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L75) *style:* **Commented code should be removed.**
```r
    # if (!"missing_species" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:80:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_check_format.R#L80) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:5:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_spec matrix with species on island (state of system at each time point)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:7:75:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' @param keep_final_state logical indicating if final state of simulation
                                                                          ^
```
[R/DAISIE_create_island.R:10:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list with the island information, composed stt table, branching times of extant
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:12:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L12) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:12:44:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
DAISIE_create_island <- function(stt_table,
                                           ^
```
[R/DAISIE_create_island.R:13:44:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L13) *style:* **Trailing whitespace is superfluous.**
```r
                                 totaltime,
                                           ^
```
[R/DAISIE_create_island.R:14:46:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
                                 island_spec,
                                             ^
```
[R/DAISIE_create_island.R:17:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L17) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:18:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:18:104:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
                                                                                ^
```
[R/DAISIE_create_island.R:19:27:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L19) *style:* **Commas should always have a space after.**
```r
  if (length(island_spec[,1]) == 0) {
                          ^
```
[R/DAISIE_create_island.R:20:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L20) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:21:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L21) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:41:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L41) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:43:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L43) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:45:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "branching time (BP)"] <- totaltime - as.numeric(island_spec[, "branching time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:46:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "Colonisation time (BP)"] <- totaltime - as.numeric(island_spec[, "Colonisation time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:47:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L47) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:54:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L54) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:56:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:56:65:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L56) *style:* **Only use double-quotes.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
                                                                ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:57:60:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L57) *style:* **Trailing whitespace is superfluous.**
```r
      number_colonists_present <- length(colonists_present)
                                                           ^
```
[R/DAISIE_create_island.R:58:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L58) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:59:35:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L59) *style:* **Trailing whitespace is superfluous.**
```r
      island_clades_info <- list()
                                  ^~
```
[R/DAISIE_create_island.R:61:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L61) *style:* **Lines should not be more than 80 characters.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:61:58:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L61) *style:* **Only use double-quotes.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:61:104:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L61) *style:* **Commas should always have a space after.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:61:105:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L61) *style:* **Trailing whitespace is superfluous.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:62:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L62) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:63:37:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L63) *style:* **Only use double-quotes.**
```r
        if (class(subset_island) != 'matrix') {
                                    ^~~~~~~~
```
[R/DAISIE_create_island.R:67:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L67) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:69:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L69) *style:* **Lines should not be more than 80 characters.**
```r
                                                      island_spec = subset_island,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:71:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L71) *style:* **Lines should not be more than 80 characters.**
```r
                                                      keep_final_state = keep_final_state)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:77:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L77) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:80:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L80) *style:* **Lines should not be more than 80 characters.**
```r
                       taxon_list = island_clades_info, island_spec = island_spec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:84:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_create_island.R#L84) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_data.R:2:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:7:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:12:34:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
#' the following elements.\cr \cr
                                 ^
```
[R/DAISIE_data.R:47:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:52:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:92:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L92) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:96:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L96) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:103:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L103) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:124:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L124) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:27:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L125) *style:* **Trailing whitespace is superfluous.**
```r
#' for the Galapagos data.
                          ^
```
[R/DAISIE_data.R:127:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L127) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:158:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L158) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:161:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L161) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:165:42:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
#' \code{$island_age} - the island age\cr
                                         ^
```
[R/DAISIE_data.R:197:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L197) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:247:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L247) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:256:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L256) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:270:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L270) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:286:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L286) *style:* **Lines should not be more than 80 characters.**
```r
#' format, accepted by DAISIE_ML, DAISIE_SR_ML, DAISIE_loglik_all and DAISIE_SR_loglik_all
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:290:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L290) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:290:81:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L290) *style:* **Trailing whitespace is superfluous.**
```r
#' #' @description A list containing the colonization and branching times of the
                                                                                ^
```
[R/DAISIE_data.R:295:34:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L295) *style:* **Trailing whitespace is superfluous.**
```r
#' the following elements.\cr \cr
                                 ^
```
[R/DAISIE_data.R:321:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L321) *style:* **Lines should not be more than 80 characters.**
```r
#' @seealso \code{\link{DAISIE_dataprep}}, \code{\link{DAISIE_ML}}, \code{\link{DAISIE_SR_ML}}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:322:77:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_data.R#L322) *style:* **Trailing whitespace is superfluous.**
```r
#' @source Hauffe, T., D. Delicado, R.S. Etienne and L. Valente (submitted).
                                                                            ^
```
[R/DAISIE_dataprep.R:2:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:7:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:10:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:86:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_dataprep.R:87:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L87) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:88:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L88) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:89:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L89) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:90:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L90) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L91) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:98:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L98) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:100:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L100) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:100:82:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L100) *style:* **Trailing whitespace is superfluous.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
                                                                                ^
```
[R/DAISIE_dataprep.R:101:79:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L101) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:104:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L104) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:113:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L113) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:114:80:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L114) *style:* **Trailing whitespace is superfluous.**
```r
#' ### Create Galapagos data object with a distinct macroevolutionary processes
                                                                               ^
```
[R/DAISIE_dataprep.R:115:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L115) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:79:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L116) *style:* **Trailing whitespace is superfluous.**
```r
#' # except for Darwin's finches) and the other applies only to type 2 species
                                                                              ^
```
[R/DAISIE_dataprep.R:117:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L117) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L118) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:128:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L128) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **functions should have cyclomatic complexity of less than 15, this has 22.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Lines should not be more than 80 characters.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:130:17:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Use <-, not =, for assignment.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                ^
```
[R/DAISIE_dataprep.R:130:38:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                     ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:49:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                ^
```
[R/DAISIE_dataprep.R:130:51:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                  ^
```
[R/DAISIE_dataprep.R:130:74:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                         ^
```
[R/DAISIE_dataprep.R:130:131:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L130) *style:* **Commas should always have a space after.**
```r
DAISIE_dataprep = function(datatable,island_age,M,number_clade_types = 1,list_type2_clades = NA, prop_type2_pool = "proportional",epss = 1E-5)
                                                                                ^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L131) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_dataprep.R:132:24:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L132) *style:* **Use <-, not =, for assignment.**
```r
  number_colonisations = nrow(datatable)
                       ^
```
[R/DAISIE_dataprep.R:133:12:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L133) *style:* **Use <-, not =, for assignment.**
```r
  datalist = list()
           ^
```
[R/DAISIE_dataprep.R:134:13:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L134) *style:* **Variable and function name style should be snake_case.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:134:28:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L134) *style:* **Put spaces around all infix operators.**
```r
  datatable$Missing_species<-as.numeric(as.character(datatable$Missing_species))
                          ~^~~
```
[R/DAISIE_dataprep.R:135:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L135) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_dataprep.R:136:5:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L136) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 1)
    ^
```
[R/DAISIE_dataprep.R:137:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L137) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:138:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L138) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:138:19:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L138) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                  ^
```
[R/DAISIE_dataprep.R:138:36:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                  ~^~
```
[R/DAISIE_dataprep.R:138:48:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L138) *style:* **Commas should always have a space after.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                               ^
```
[R/DAISIE_dataprep.R:138:59:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L138) *style:* **Put spaces around all infix operators.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                         ~^~
```
[R/DAISIE_dataprep.R:138:60:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L138) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    datalist[[1]] = list(island_age=island_age,not_present=(M - number_colonisations))
                                                           ^
```
[R/DAISIE_dataprep.R:140:5:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L140) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(number_clade_types == 2)
    ^
```
[R/DAISIE_dataprep.R:141:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L141) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:142:32:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L142) *style:* **Use <-, not =, for assignment.**
```r
    number_type2_colonisations = length(list_type2_clades)
                               ^
```
[R/DAISIE_dataprep.R:143:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L143) *style:* **Lines should not be more than 80 characters.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:143:32:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L143) *style:* **Use <-, not =, for assignment.**
```r
    number_type1_colonisations = number_colonisations - number_type2_colonisations
                               ^
```
[R/DAISIE_dataprep.R:145:5:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L145) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    {
    ^
```
[R/DAISIE_dataprep.R:146:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L146) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:146:25:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L146) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:146:41:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L146) *style:* **Put spaces around all infix operators.**
```r
      not_present_type1 = DDD::roundn((M/number_colonisations) * number_type1_colonisations) - number_type1_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:147:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L147) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:147:25:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L147) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:147:41:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L147) *style:* **Put spaces around all infix operators.**
```r
      not_present_type2 = DDD::roundn((M/number_colonisations) * number_type2_colonisations) - number_type2_colonisations
                                       ~^~
```
[R/DAISIE_dataprep.R:149:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L149) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:149:25:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L149) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type1 = DDD::roundn(M * (1 - prop_type2_pool)) - number_type1_colonisations
                        ^
```
[R/DAISIE_dataprep.R:150:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:150:25:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L150) *style:* **Use <-, not =, for assignment.**
```r
      not_present_type2 = DDD::roundn(M * prop_type2_pool) - number_type2_colonisations
                        ^
```
[R/DAISIE_dataprep.R:152:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:19:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L152) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[1]] = list(island_age = island_age, not_present_type1 = not_present_type1, not_present_type2 = not_present_type2)
                  ^
```
[R/DAISIE_dataprep.R:155:3:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L155) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_dataprep.R:156:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Lines should not be more than 80 characters.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:156:23:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Use <-, not =, for assignment.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                      ^
```
[R/DAISIE_dataprep.R:156:71:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                      ^
```
[R/DAISIE_dataprep.R:156:86:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:107:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:117:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:156:147:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L156) *style:* **Commas should always have a space after.**
```r
    datalist[[i + 1]] = list(colonist_name = as.character(datatable[i,"Clade_name"]),branching_times = NA,stac = NA,missing_species = datatable[i,"Missing_species"], type1or2 = 1)
                                                                                ^
```
[R/DAISIE_dataprep.R:157:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L157) *style:* **Lines should not be more than 80 characters.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:157:14:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L157) *style:* **Use <-, not =, for assignment.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
             ^
```
[R/DAISIE_dataprep.R:157:77:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                            ^
```
[R/DAISIE_dataprep.R:157:97:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L157) *style:* **Commas should always have a space after.**
```r
    the_brts = rev(sort(as.numeric(unlist(strsplit(as.character(datatable[i,"Branching_times"]),split = ",")))))
                                                                                ^
```
[R/DAISIE_dataprep.R:158:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L158) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_dataprep.R:159:1:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:7:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
      ^
```
[R/DAISIE_dataprep.R:159:21:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Put spaces around all infix operators.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                   ~^~
```
[R/DAISIE_dataprep.R:159:33:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                ^
```
[R/DAISIE_dataprep.R:159:46:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                             ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:159:70:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                     ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```
[R/DAISIE_dataprep.R:159:84:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Only use double-quotes.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^~~~~~~
```
[R/DAISIE_dataprep.R:159:92:](https://github.com/rsetienne/DAISIE/blob/d8d7ec382ac426786512395dfd231c9f1ed0f622/R/DAISIE_dataprep.R#L159) *style:* **Commas should always have a space after.**
```r
    if(max(the_brts)>island_age){print(paste('Colonisation time of ',max(the_brts),' for ',as.character(datatable[i,"Clade_name"]),' is older than island age',sep=''))}
                                                                                ^
```


ENTREGUE


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Also, some bits of code were moved around.


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Так вот реализация load more


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Ah, good point: it's indeed microseconds:

```
stats->timestamp = (((guint64)now.tv_sec)*1E6+now.tv_usec);
```

I'll fix the check.


Copy of this build can be found at
https://www.mewbuilds.com/build/c87f322c53b2d473f7beb369ccfcb33be38610d6/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmUEx7RcBB3CtttSTFg3zsBv2WBLqUqmEDYNPcx4a3zCga
                       Virus Total analysis
                       https://www.virustotal.com/file/8154a48c2585ab8f1b4898f0bf1618264140caf93578573689efa4ca9b61fa00/analysis/1567171897/


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This regression fix will be included in then next release. Thanks!


> I'll fix the check.

I'll check the fix.


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[peqiin (25) (1).zip](https://github.com/samiaalr55/peqin/files/3560086/peqiin.25.1.zip)


well it works for me... when i defined the following configuration in application.yml it has been injected properly...
{code}
logging.logstash:
  url: 192.168.99.100:8500
  trustStoreLocation: /tmp/location
{code}


@jnobyrne I removed these lines. In the previous version, you couldn't zoom out when the window was smaller than 300ms. Do you agree or am I missing the intended behavior for this part?


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Remove this class


הוסף עסקים חדשים


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support XT1799?


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What is this change achieving? It's changing the ordering in pre_traversal, but why do you need this?


@phyy-nx, @ I think this is a less broad-brush handling of this specific exception.  Since I haven't ever experienced the race condition this was designed to catch, you may wish to check I haven't introduced a regression here.


I had to remove this line in order to get the cylindrical tile running in python without a N_tensor being calculated previously.
If you do not hand over a N_out, it ca not be filled.


This kind of pattern-matching is very fragile. Do you need it for something, or is it just an optimisation?


omg plox don't do this


Well if you cannot provide a MWE there's nothing I can do. In any case your change breaks our manual, so I'd say revert and work around it in your document unless we find the reason.


Any reason this is on a new line?


Is this a linter adding the additional whitespace?


So, this is a change to make sure that a child comes after `all` its parents, which was previously not ensured.


I actually prefer this comment style, but we probably shouldn't change it for this particular PR.


You don't actually need this DTO for this simple task, but let it be for future.


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Deployment failed with the following error:

~~~
Uploading failed. Please try again.
~~~


Really redundant variable, you can simply return randomUsersDTO.results


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Schema Validation Failed!
Rejecting Schema: https://schemas.taskcluster.net/queue/v1/create-task-request.json#
Errors:
  * data should have required property 'deadline'

---

* method:     createTask
* errorCode:  InputValidationError
* statusCode: 400
* time:       2019-08-30T13:48:33.135Z

</details>


```javascript
created(){
xxxx  //去掉fuction
}
```


As you will be working with this API further, extract this logic in some separate method to make it reusable


secondo me è importante


What you could do is try if one of etoolbox's commands (`\protected@csxdef` and friends) helps.


I guess this part can be extracted somehow as well


target: 'https://api.github.com'


axios.get('/api/users/Fire-zy')


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Method names should be lower-cased


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写的嘛玩意儿


# Specs execution successful
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### Plans updated

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---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Eh? But it's just an animation in a progress bar...


fixed, thanks :)


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this should be handled in tink.macro.Functions.asExpr


These methods are a bit duplicated. Make 1 parameterized method instead


骚骚骚


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yup


# EXTM3U
#EXTINF: -1 tvg-id = "" tvg-name = "" tvg-logo = "https://i.imgur.com/Z2Io8n4.png" grup başlığı = "Dini", İslami Ağ
http://162.244.81.145:2215/live/livestream/playlist.m3u8


Line should be wrapped at 80 characters as per the styleguide. This is fairly minor and low priority, however styleguides are not designed to be deviated from.


Let's make this test parameterized - it should receive this amount from testng.xml file. Read how to implement this, it's quite easy


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[peqiin (25) (1).zip](https://github.com/samiaalr55/peqin/files/3560121/peqiin.25.1.zip)


Please document this function: `TestInDepth` is an ambiguous name.


Get rid of this hardcoded amount by making this method parameterized - more details below


ישן


nice one


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Hide


cl /W4 main.c ap_isspace.c /link /out:space.exe


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
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Project | Plan | Build
---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

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|Deployment project |
----|
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For the sake of readability, please insert a space before the `/>` element. This is fairly minor and I am not concerned that it will not be fixed for the time being (but it should be fixed if this file is ever refactored).


{dismiss}


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{null}


original


Definitionally, this is not pre-order traversal, but rather reverse post-order, AKA a topological sort of the dag. You could implement it instead as:

```
def rpo(expr):
    yield from reversed(unique_post_traversal(expo))
```


In ASCII, whitespace characters are space (' '), tab ('\t'), carriage return ('\r'), newline ('\n'), vertical tab ('\v') and formfeed ('\f').


This should fix #73


Quick fix.


teste


Also - rename this class (should be upper-cased)


Ok thx 😊

Gesendet von Mail für Windows 10

Von: 梦路
Gesendet: Freitag, 30. August 2019 12:33
An: ZeNiXxX/android_manifest
Cc: ZeNiXxX; Author
Betreff: Re: [ZeNiXxX/android_manifest] Track PolarKernel [1/2] (a961adf)

Don't use dev branch. It's for Q development.
—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub, or mute the thread.


I think we need this. (Can this part be more general?)

So, we think about the following problem:

V0 = FunctionSpace(mesh, ...)
V1 = FunctionSpace(submesh, ...)
V = V0 * V1
u = Function(V)
u0, u1 = split(u)
v0, v1 = TestFunctions(V)

F = v0 * u0 * Measure("cell", mesh)
solve(F==0)

This problem should be valid, but even if we are only using `u0`, `u1` also goes into the kernel argument in the current implementation.  PyOP2 complains because `u1`s `cell_node_map` has a different iteration set.
Also, I think `u1` going into the kernel in this setting is weird as `u1` is not defined everywhere in the `mesh`.


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yay
we did!


Said said we can still do tests without the hardware, I just recorded the device events doing everything (moving mouse, clicking buttons scrolling scrollwheel) using evemu-record and uploaded that recording (ckb-evrec) in the google drive folder: https://drive.google.com/open?id=1WRrrH8207NwkEzIesKulEdau4Dngs_g1
That way you can simulate my mouse using evemu:
`evemu-play ckb-evrec`


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@vanpir73 do you want to change something?


Load excel file from the specific directory


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I added a comment saying to change this to `ash` for Alpine.

Until we get the task thing figured out with alternate shells, we'll need to do something here.  We're broken by default on Linux given the popularity of zsh.


ok


nice


Work towards #3.


Now could not deploy this pull request since it contains the following references to invalid secrets in the `env` sections of the `now.json` file:

* `github-token` (in env: `GITHUB_API_TOKEN)`

Add those secrets or remove them from the `env` maps in the `now.json` file.


I would like to stick to Xenial if possible due to the standard support until 2021.

What is the reasoning w.r.t. using Trusty?


![](https://github.trello.services/images/mini-trello-icon.png) [create Creadentials form](https://trello.com/c/slTa9GU5/10-create-creadentials-form)


We can look into this together.


@MrSwitch If you're not using the state setter, this probably doesn't need to be in state, right? If you want to initialise a value that needs to persist throughout renders, you can use `useRef` for it. (`const systemOffset = useRef()` - the value is then accessed using `systemOffset.current`)


Also - this isn't the existing dockerfile one - this is the template for creating a new definition.  Are you using this one?

The right one is:
https://github.com/microsoft/vscode-dev-containers/tree/master/containers/docker-existing-dockerfile

and

https://github.com/microsoft/vscode-dev-containers/tree/master/containers/docker-in-docker-compose

In those cases I agree, we should comment it out.


@andreifilip123 Forgot about that! Thanks!


top


fine fine fine


Bruh


GameAgent?


This is a good change w.r.t. the current state of Zest. However, we should probably plan a rework to ease adjustment of NodePart etc. visualisations.


range lower case of ascii table


cl /W4 main.c ap_islower.c /link /out:lower.exe


I would rather refactor Dot/Zest to get rid of this.


@YoshuaNava
Thanks for the information. Actually, this force-pushed repo is the latest one except for some format cleanup (absolutely no function change).


I don't get the motivation for this change. If there is a default implementation in the topmost class, can't we just say using Base::Build in other classes?


I would be inclined to try and ask the final (to be scheduled) `GEM` dag in tsfc which coefficients it needs and update `enabled_coefficients` appropriately there. Would that work? It might need some refactoring of how the kernel arguments are built.


We should rather refactor to make that Pane accessible to sub-classes.


Should be IllegalStateException


I HAVE DONE CHANGES


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On Fri, Aug 30, 2019 at 3:49 PM Jürgen Spitzmüller <notifications@github.com>
wrote:

> What you could do is try if one of etoolbox's commands (\protected@csxdef
> and friends) helps.
>

glet seems to work here does it solve the manual problem ?

> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
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> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ABE5UHAKSNYS2T7LVWSCTSLQHEQP5ANCNFSM4ISM5FZA>
> .
>


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hold revert


We don't use GitHub for code review, so very few people see these comments.  If you want to comment on the change, please comment on https://golang.org/cl/170699 instead, or if you think this is a bug then open an issue at https://golang.org/issue.  Thanks.

(I don't know the answer to your question.)


stop remove deny dismiss delete


Is the Node reconstructed on each call?


@JuliaRegistrator register()


Successfully updates the index.jade


Registration pull request created: [JuliaRegistries/General/3080](https://github.com/JuliaRegistries/General/pull/3080)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.10.0 -m "<description of version>" 4abfdc0a45ff3c91ce604985da3574b29ce60436
git push origin v0.10.0
```


TeamCity Bvcms / Build [Build 1927](https://builds.tpsdb.com/viewLog.html?buildId=8154&buildTypeId=Bvcms_Build) is now running


TeamCity Bvcms / Build [Build 1928](https://builds.tpsdb.com/viewLog.html?buildId=8155&buildTypeId=Bvcms_Build) is now running


TeamCity Bvcms / Build [Build 1927](https://builds.tpsdb.com/viewLog.html?buildId=8154&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Failed to start build Build time: 00:00:02


TeamCity Bvcms / Build [Build 1928](https://builds.tpsdb.com/viewLog.html?buildId=8155&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Failed to start build Build time: 00:00:02


Seems unnecessary since children are cleared anyway.


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/fix-6387/2/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/fix-6387/2/display/redirect) (on internal Jenkins) failed in stage(s) 'Install Provisioning Profiles' 🔥 : hudson.AbortException: script returned exit code 104

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/fix-6387/2//console)
✅ Packages: [xamarin.ios-12.15.0.314.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/fix-6387/e8eadcd64e6e84e3f4cb9dd20e6e2a941609f5f9/2/package/xamarin.ios-12.15.0.314.pkg) [xamarin.mac-5.15.0.314.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/fix-6387/e8eadcd64e6e84e3f4cb9dd20e6e2a941609f5f9/2/package/xamarin.mac-5.15.0.314.pkg)


@JuliaRegistrator register


Registration pull request updated: [JuliaRegistries/General/3070](https://github.com/JuliaRegistries/General/pull/3070)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.1.0 -m "<description of version>" 247f1b812d2e5e382e9e42ad2216f40ac90ab03b
git push origin v0.1.0
```


confirmo


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-120-aledade.pantheonsite.io/)

Created multidev environment [pr-120](https://dashboard.pantheon.io/sites/533c69ec-70af-4cb2-af59-49d50e7d05f7#pr-120) for aledade.


Ah...I'm looking in the wrong place. :)

For the existing Dockerfile / docker-compose.yml you could set the shell setting to `null` which will override any user setting (like for zsh) and make the terminal pick the default shell of the container.

For the task issue with existing Dockerfile / docker-compose.yml couldn't we set the more specifc `"terminal.integrated.automationShell.linux"` to bash to workaround the issue for most containers?


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* https://kstar.hanterokun.now.sh
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We should probably generate this via xtend.


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* https://www.johnandrey.xyz
* https://johnserrano-stage.now.sh
* https://site-john-serrano.john-serrano-team.now.sh
* https://site-john-serrano-git-master.john-serrano-team.now.sh


yeah the result are good for only a single image and no training time but can be improved like the eyes usually are unstable and extreme head poses dont work well get a box as well


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I have left a comment


have you seen shaoanlu new face swap repo with only a single image and no training https://github.com/shaoanlu/fewshot-face-translation-GAN


All three issues can be attributed to devious linters....


The isight w.r.t. placing a Group in a Scene is very useful. I would like to move this utility to some more prominent place.


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A tester j'ai tenté une gestion via un synonym
cf https://github.com/PnX-SI/UsersHub/commit/ed43ecd45071c315a20358a77674fcf25032b6f7


`\glet` is not defined here but `\global\let` works.


> Bruh

Uwu


related https://github.com/MarlinFirmware/Marlin/issues/15102


wow!


Start


stray debug print


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> For the existing Dockerfile / docker-compose.yml you could set the shell setting to null

Yeah in this case, the setting is at the OS level, not the user level.  (I've run `chsh` on my Linux machine, Mac and WSL), but combined with a comment  that is a good suggestion for the existing definitions.

> For the task issue with existing Dockerfile / docker-compose.yml couldn't we set the more specifc "terminal.integrated.automationShell.linux" to bash to workaround the issue for most containers?

We could, but as I thought through the different scenarios, I think that could be even more confusing. For example, if the Linux shell has been overriden in user settings, you could end up with the reverse where the tasks are in bash but the shell is something else.  Sticking with the same shell in both cases is a bit more predictable.  We could set the shell to null, but if you do install zsh you then end up needing to tweak two settings.


@cvalarida Was this committed by accident?


I believe we should refactor some minor stuff, generally looks good to me. However, I still have to test it.


tohle si myslím že není potřeba, protože ti stačí aby to promisified.then vracelo true a potom by sel catch, potom odfiltrujes tri false -> a misto podminky hasErrors kontrolujes jestli vsechny zpravy ktere jsi se chystal odeslat jsi opravdu odeslal (nebo resp zkonzumoval)

obecně bych se vyhýbal deklarací bez let pokud to není nebytně nutné


some `printTrace()`s of stdout and stderr from the browser could be useful. Also a printTrace that just says like 'We're trying to start the browser', 'We think the browser is started', 'The browser is going down', etc.


cl /W4 main.c ap_isupper.c /link /out:upper.exe


gah! Missed this one! Good catch!


range upper case of ascii table


tohle si myslim ze je nadbytecna deklarace -> staci preci rovnou s.listen(parsed, msg).then().catch


It doesn't look like stdout is drained anywhere.


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The MockProcessManager defined in mocks.dart looks like it does what you want.


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Now could not deploy this pull request since it contains the following references to invalid secrets in the `env` sections of the `now.json` file:

* `github-token` (in env: `GITHUB_API_TOKEN)`

Add those secrets or remove them from the `env` maps in the `now.json` file.


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* https://slow-zone.now.sh
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@JuliaRegistrator register()


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* https://praca-velha-frontend.ikas.now.sh
* https://praca-velha-frontend-git-master.ikas.now.sh


Registration pull request created: [JuliaRegistries/General/3081](https://github.com/JuliaRegistries/General/pull/3081)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.11.2 -m "<description of version>" 6bb4c588dbf0ac4331323af8ec5d1957d56e2c77
git push origin v0.11.2
```


Good


Deployment failed with the following error:

~~~
The chosen alias "magento-pwastudio-venia-develop.now.sh" is already in use by another account.
~~~


Successfully aliased the URL <https://slow-zone-lohlsz4z5.now.sh> to the following aliases:

* https://slow-zone.now.sh
* https://slow-zone.banterability.now.sh
* https://slow-zone-git-master.banterability.now.sh


❌ [Build was (probably) aborted](https://jenkins.internalx.com/job/macios/job/fix-6387/3/display/redirect)

🔥 [Jenkins job](https://jenkins.internalx.com/job/macios/job/fix-6387/3/display/redirect) (on internal Jenkins) failed in stage(s) 'Install Provisioning Profiles' 🔥 : hudson.AbortException: script returned exit code 104

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/fix-6387/3//console)
✅ Packages: [xamarin.ios-12.15.0.317.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/fix-6387/8ff3bb61c86f92ac36d319e9ac8033f96fd64e0c/3/package/xamarin.ios-12.15.0.317.pkg) [xamarin.mac-5.15.0.317.pkg](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/fix-6387/8ff3bb61c86f92ac36d319e9ac8033f96fd64e0c/3/package/xamarin.mac-5.15.0.317.pkg)


Yeah, definitely an error if there’s dupes in publics but I remember putting a check for that... somewhere. Only happened once or twice though so maybe not too important :)

Cheers from Fontainebleau in France 👋 🧗♂


Could you just change the `devices.length > 1` above to `>=` ?


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Error while trying to register: "File (Julia)Project.toml not found"


it work here on my side.

Could you push a patch with \global\let

On Fri, Aug 30, 2019 at 4:30 PM Jürgen Spitzmüller
<notifications@github.com> wrote:
>
> \glet is not defined here but \global\let works.
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub, or mute the thread.


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Error while trying to register: Julia version < 0.7 not allowed in `[compat]`


Ok - udpated!


Problem that `Build` method dedicated to use in constructor, but was made virtual.
While `Build` is public method for a while, we decide to keep it, but introduce "normal" methods.
Probably, one also could keep old names and just use `TDirectoryFile::Build()` and `TDirectory::Build()`.


The old RedMine issue tracker this referred to has been retired: https://redmine.open-bio.org/issues/3323

@iosonofabio would you agree to dual license your Biopython contributions as discussed on #898 so we can switch to the standard 3-clause BSD license? (Apologies if you already have done so, and I have overlooked this)


@dutchTender @JackieBabos @serra-trinh for integration


Done


This is a comment to test


It doesn't seem to happen on my Windows build that's still using Qt 5.10.


Download user&pass nya tools versi 6.2


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Creating the xxnPrefs() tile first means that NorthernUI() and xxnLocalization() can pull from it.


doc mentions to use formula name as prefix to avoid conflict https://www.rubydoc.info/github/Homebrew/brew/Formula:pkgshare


@Alhadis thanks! Will do. `v doc` will be out within the next week.


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The first line of the comment block should be on the same line as the """


tentative de retour sur ce commit


Looks great.


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Docs should be in the numpy doc format and more extensive.


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We could install the latest version that's released instead of master https://github.com/trek10inc/awsume/releases


There should be spaces around operators.


# Before:

# After:


Yep!


cl /W4 main.c ap_tolower.c /link /out:tolower.exe


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This is unnecessary, they default to nullptr.


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The chosen alias "magento-pwastudio-venia-develop.now.sh" is already in use by another account.
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What for?


what for?


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Fixed return 0 on non-existent user to error message in userrank! cog


Man, how can I access linux from this modem?