[R/buildMetadata.R:5:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param isRasterToMatch Logical. Is this(these) layer(s) the \code{rasterToMatch} layers.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:6:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
#'        If \code{TRUE}, then this layer can be accessed by \code{rasterToMatch(map)}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:12:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
#'  If \code{TRUE} or a character vector, then this layer will be added to a leaflet map.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:13:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
#'  For \code{RasterLayer} object, this will trigger a call to \code{gdal2tiles}, making tiles.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:20:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
buildMetadata <- function(metadata, isStudyArea, isRasterToMatch, layerName, obj,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:20:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L20) *style:* **Variable or function name should be snake_case.**
```r
buildMetadata <- function(metadata, isStudyArea, isRasterToMatch, layerName, obj,
^~~~~~~~~~~~~
```
[R/buildMetadata.R:20:37:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L20) *style:* **Variable or function name should be snake_case.**
```r
buildMetadata <- function(metadata, isStudyArea, isRasterToMatch, layerName, obj,
                                    ^~~~~~~~~~~
```
[R/buildMetadata.R:20:50:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L20) *style:* **Variable or function name should be snake_case.**
```r
buildMetadata <- function(metadata, isStudyArea, isRasterToMatch, layerName, obj,
                                                 ^~~~~~~~~~~~~~~
```
[R/buildMetadata.R:20:67:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L20) *style:* **Variable or function name should be snake_case.**
```r
buildMetadata <- function(metadata, isStudyArea, isRasterToMatch, layerName, obj,
                                                                  ^~~~~~~~~
```
[R/buildMetadata.R:21:27:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L21) *style:* **Variable or function name should be snake_case.**
```r
                          columnNameForLabels, objHash, leaflet, envir, ...) {
                          ^~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:21:48:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L21) *style:* **Variable or function name should be snake_case.**
```r
                          columnNameForLabels, objHash, leaflet, envir, ...) {
                                               ^~~~~~~
```
[R/buildMetadata.R:22:8:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L22) *warning:* **no visible global function definition for ‘copy’, Did you mean 'coef'?**
```r
  b <- copy(.singleMetadataNAEntry)
       ^~~~
```
[R/buildMetadata.R:22:13:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L22) *warning:* **no visible binding for global variable ‘.singleMetadataNAEntry’**
```r
  b <- copy(.singleMetadataNAEntry)
            ^~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:28:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L28) *style:* **Variable or function name should be snake_case.**
```r
    studyAreaNumber <- 1 + NROW(metadata[compareNA(studyArea, TRUE) |
    ^~~~~~~~~~~~~~~
```
[R/buildMetadata.R:29:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
                                               (is.numeric(studyArea) & studyArea > 0)])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:30:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L30) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
    set(b, NULL, "studyArea", studyAreaNumber)
    ^~~
```
[R/buildMetadata.R:31:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L31) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
    set(b, NULL, "area", area)
    ^~~
```
[R/buildMetadata.R:35:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L35) *style:* **Variable or function name should be snake_case.**
```r
    rasterToMatchNumber <- 1 + NROW(metadata[compareNA(rasterToMatch, TRUE) |
    ^~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:36:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
                                           (is.numeric(rasterToMatch) & rasterToMatch > 0)])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:37:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L37) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
    set(b, NULL, "rasterToMatch", rasterToMatchNumber)
    ^~~
```
[R/buildMetadata.R:43:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L43) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
  set(b, NULL, "layerName", layerName)
  ^~~
```
[R/buildMetadata.R:44:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L44) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
  set(b, NULL, "layerType", class(obj))
  ^~~
```
[R/buildMetadata.R:47:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L47) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
      set(b, NULL, "columnNameForLabels", columnNameForLabels)
      ^~~
```
[R/buildMetadata.R:50:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L50) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
  set(b, NULL, "objectHash", objHash)
  ^~~
```
[R/buildMetadata.R:53:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L53) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
    set(b, NULL, "leaflet", leaflet)
    ^~~
```
[R/buildMetadata.R:55:14:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L55) *warning:* **no visible global function definition for ‘.robustDigest’**
```r
      dig <- .robustDigest(obj)
             ^~~~~~~~~~~~~
```
[R/buildMetadata.R:56:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L56) *style:* **Variable or function name should be snake_case.**
```r
      tilePath <- ifelse(is.na(leaflet), asPath(NA_character_),
      ^~~~~~~~
```
[R/buildMetadata.R:58:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L58) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
      set(b, NULL, "leafletTiles", tilePath)
      ^~~
```
[R/buildMetadata.R:62:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L62) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
  set(b, NULL, "envir", list(list(envir)))
  ^~~
```
[R/buildMetadata.R:66:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L66) *style:* **Lines should not be more than 80 characters.**
```r
    dots <- dots[!unlist(lapply(dots, is.null))] # remove NULL because that isn't added to data.table anyway
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:79:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L79) *style:* **Variable or function name should be snake_case.**
```r
  columnsToAdd <- dots
  ^~~~~~~~~~~~
```
[R/buildMetadata.R:84:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L84) *style:* **Lines should not be more than 80 characters.**
```r
        ## a data.table can't handle all types of objects. need to wrap in a list to stick it there
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:86:9:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L86) *style:* **Variable or function name should be snake_case.**
```r
        needToSet <- TRUE
        ^~~~~~~~~
```
[R/buildMetadata.R:89:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L89) *style:* **Lines should not be more than 80 characters.**
```r
          needToSet <- tryCatch(set(b, NULL, nta, cta), silent = TRUE, error = function(x) TRUE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/buildMetadata.R:89:11:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L89) *style:* **Variable or function name should be snake_case.**
```r
          needToSet <- tryCatch(set(b, NULL, nta, cta), silent = TRUE, error = function(x) TRUE)
          ^~~~~~~~~
```
[R/buildMetadata.R:89:33:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/buildMetadata.R#L89) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
          needToSet <- tryCatch(set(b, NULL, nta, cta), silent = TRUE, error = function(x) TRUE)
                                ^~~
```
[R/GIS.R:7:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list containing: \code{sizeInHa}, the area; and \code{polyID}, the polygon ID.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/GIS.R:11:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L11) *style:* **Variable or function name should be snake_case.**
```r
areaAndPolyValue <- function(ras) {
^~~~~~~~~~~~~~~~
```
[R/GIS.R:12:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L12) *style:* **Variable or function name should be snake_case.**
```r
  polyIndivSpecies <- gdal_polygonizeR(ras) # 99 seconds with full ras
  ^~~~~~~~~~~~~~~~
```
[R/GIS.R:12:23:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L12) *warning:* **no visible global function definition for ‘gdal_polygonizeR’**
```r
  polyIndivSpecies <- gdal_polygonizeR(ras) # 99 seconds with full ras
                      ^~~~~~~~~~~~~~~~
```
[R/GIS.R:13:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L13) *style:* **Variable or function name should be snake_case.**
```r
  pArea <- as.numeric(sf::st_area(polyIndivSpecies) / 1e4)
  ^~~~~
```
[R/GIS.R:19:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L19) *style:* **Lines should not be more than 80 characters.**
```r
#' Based on \url{https://johnbaumgartner.wordpress.com/2012/07/26/getting-rasters-into-shape-from-r/}.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/GIS.R:33:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L33) *style:* **Variable or function name should be snake_case.**
```r
gdal_polygonizeR <- function(x, outshape = NULL, gdalformat = "ESRI Shapefile",
^~~~~~~~~~~~~~~~
```
[R/GIS.R:48:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
  if (!file.exists(pypath)) stop("Can't find gdal_polygonize.py on your system.")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/GIS.R:56:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L56) *style:* **Variable or function name should be snake_case.**
```r
    f.exists <- file.exists(paste(outshape, c("shp", "shx", "dbf"), sep = "."))
    ^~~~~~~~
```
[R/GIS.R:59:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
                   toString(paste(outshape, c("shp", "shx", "dbf"), sep = ".")[f.exists])),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/GIS.R:65:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L65) *warning:* **no visible global function definition for ‘writeRaster’**
```r
    writeRaster(x, rastpath, datatype = assessDataType(x))
    ^~~~~~~~~~~
```
[R/GIS.R:65:41:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L65) *warning:* **no visible global function definition for ‘assessDataType’**
```r
    writeRaster(x, rastpath, datatype = assessDataType(x))
                                        ^~~~~~~~~~~~~~
```
[R/GIS.R:73:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L73) *style:* **Lines should not be more than 80 characters.**
```r
    shp <- sf::read_sf(dsn = dirname(outshape), layer = basename(file_path_sans_ext(outshape)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/GIS.R:73:66:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L73) *warning:* **no visible global function definition for ‘file_path_sans_ext’**
```r
    shp <- sf::read_sf(dsn = dirname(outshape), layer = basename(file_path_sans_ext(outshape)))
                                                                 ^~~~~~~~~~~~~~~~~~
```
[R/GIS.R:74:22:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L74) *warning:* **no visible global function definition for ‘extent’, Did you mean 'extends'?**
```r
    sf::st_bbox(shp, extent(x))
                     ^~~~~~
```
[R/GIS.R:89:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L89) *style:* **Variable or function name should be snake_case.**
```r
.rasterToMemory <- function(x, ...) {
^~~~~~~~~~~~~~~
```
[R/GIS.R:90:8:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L90) *warning:* **no visible global function definition for ‘raster’, Did you mean 'paste'?**
```r
  r <- raster(x, ...)
       ^~~~~~
```
[R/GIS.R:108:24:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L108) *style:* **Variable or function name should be snake_case.**
```r
fasterize2 <- function(emptyRaster, polygonToFasterize, field) {
                       ^~~~~~~~~~~
```
[R/GIS.R:108:37:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L108) *style:* **Variable or function name should be snake_case.**
```r
fasterize2 <- function(emptyRaster, polygonToFasterize, field) {
                                    ^~~~~~~~~~~~~~~~~~
```
[R/GIS.R:109:10:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L109) *warning:* **no visible global function definition for ‘raster’, Did you mean 'paste'?**
```r
  ras <- raster(emptyRaster)
         ^~~~~~
```
[R/GIS.R:111:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L111) *style:* **Lines should not be more than 80 characters.**
```r
    polygonToFasterize <- Cache(cropInputs, polygonToFasterize, rasterToMatch = ras)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/GIS.R:111:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    polygonToFasterize <- Cache(cropInputs, polygonToFasterize, rasterToMatch = ras)
    ^~~~~~~~~~~~~~~~~~
```
[R/GIS.R:111:27:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L111) *warning:* **no visible global function definition for ‘Cache’**
```r
    polygonToFasterize <- Cache(cropInputs, polygonToFasterize, rasterToMatch = ras)
                          ^~~~~
```
[R/GIS.R:111:33:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L111) *warning:* **no visible binding for global variable ‘cropInputs’**
```r
    polygonToFasterize <- Cache(cropInputs, polygonToFasterize, rasterToMatch = ras)
                                ^~~~~~~~~~
```
[R/GIS.R:113:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L113) *style:* **Variable or function name should be snake_case.**
```r
  thePoly <- projectInputs(polygonToFasterize, targetCRS = crs(ras))
  ^~~~~~~
```
[R/GIS.R:113:14:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L113) *warning:* **no visible global function definition for ‘projectInputs’**
```r
  thePoly <- projectInputs(polygonToFasterize, targetCRS = crs(ras))
             ^~~~~~~~~~~~~
```
[R/GIS.R:113:60:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L113) *warning:* **no visible global function definition for ‘crs’, Did you mean 'cars'?**
```r
  thePoly <- projectInputs(polygonToFasterize, targetCRS = crs(ras))
                                                           ^~~
```
[R/GIS.R:114:11:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/GIS.R#L114) *style:* **Variable or function name should be snake_case.**
```r
  thePoly$polygonNum <- seq_along(thePoly)
          ^~~~~~~~~~
```
[R/makeTiles.R:1:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L1) *style:* **Variable or function name should be snake_case.**
```r
makeTiles <- function(tilePath, obj) {
^~~~~~~~~
```
[R/makeTiles.R:1:23:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L1) *style:* **Variable or function name should be snake_case.**
```r
makeTiles <- function(tilePath, obj) {
                      ^~~~~~~~
```
[R/makeTiles.R:2:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L2) *style:* **Variable or function name should be snake_case.**
```r
  dirNotExist <- !dir.exists(tilePath)
  ^~~~~~~~~~~
```
[R/makeTiles.R:4:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
  if (dirNotExist) { # assume that tilePath is unique for that obj, via .robustDigest
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeTiles.R:4:20:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L4) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (dirNotExist) { # assume that tilePath is unique for that obj, via .robustDigest
                   ^
```
[R/makeTiles.R:8:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
    objLflt <- try(projectRaster(obj, crs = CRS("+init=epsg:4326")), silent = TRUE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeTiles.R:8:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L8) *style:* **Variable or function name should be snake_case.**
```r
    objLflt <- try(projectRaster(obj, crs = CRS("+init=epsg:4326")), silent = TRUE)
    ^~~~~~~
```
[R/makeTiles.R:8:20:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L8) *warning:* **no visible global function definition for ‘projectRaster’**
```r
    objLflt <- try(projectRaster(obj, crs = CRS("+init=epsg:4326")), silent = TRUE)
                   ^~~~~~~~~~~~~
```
[R/makeTiles.R:8:45:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L8) *warning:* **no visible global function definition for ‘CRS’, Did you mean 'C'?**
```r
    objLflt <- try(projectRaster(obj, crs = CRS("+init=epsg:4326")), silent = TRUE)
                                            ^~~
```
[R/makeTiles.R:9:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L9) *style:* **Variable or function name should be snake_case.**
```r
    tmpFile <- tempfile(fileext = ".tif")
    ^~~~~~~
```
[R/makeTiles.R:10:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L10) *style:* **Variable or function name should be snake_case.**
```r
    objLflt <- try(writeRaster(objLflt, tmpFile), silent = TRUE)
    ^~~~~~~
```
[R/makeTiles.R:10:20:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L10) *warning:* **no visible global function definition for ‘writeRaster’**
```r
    objLflt <- try(writeRaster(objLflt, tmpFile), silent = TRUE)
                   ^~~~~~~~~~~
```
[R/makeTiles.R:12:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L12) *style:* **Variable or function name should be snake_case.**
```r
    toDo <- TRUE
    ^~~~
```
[R/makeTiles.R:13:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L13) *style:* **Variable or function name should be snake_case.**
```r
    tryNum <- 1
    ^~~~~~
```
[R/makeTiles.R:16:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L16) *style:* **Lines should not be more than 80 characters.**
```r
      out <- try(tiler::tile(tmpFile, tilePath, zoom = "1-10", crs = CRS("+init=epsg:4326"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/makeTiles.R:18:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L18) *style:* **Variable or function name should be snake_case.**
```r
      toDo <- is(out, "try-error")
      ^~~~
```
[R/makeTiles.R:22:9:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L22) *style:* **Variable or function name should be snake_case.**
```r
        toDo <- TRUE
        ^~~~
```
[R/makeTiles.R:25:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/makeTiles.R#L25) *style:* **Variable or function name should be snake_case.**
```r
      tryNum <- tryNum + 1
      ^~~~~~
```
[R/map-analysis.R:17:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
#'   \code{analysisGroup2} column of the \code{map@@metadata} or a \code{functionName}.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:39:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L39) *style:* **Variable or function name should be snake_case.**
```r
mapAnalysis <- function(map, functionName = NULL, purgeAnalyses = NULL,
^~~~~~~~~~~
```
[R/map-analysis.R:39:30:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L39) *style:* **Variable or function name should be snake_case.**
```r
mapAnalysis <- function(map, functionName = NULL, purgeAnalyses = NULL,
                             ^~~~~~~~~~~~
```
[R/map-analysis.R:39:51:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L39) *style:* **Variable or function name should be snake_case.**
```r
mapAnalysis <- function(map, functionName = NULL, purgeAnalyses = NULL,
                                                  ^~~~~~~~~~~~~
```
[R/map-analysis.R:40:25:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L40) *style:* **Variable or function name should be snake_case.**
```r
                        useParallel = getOption("map.useParallel"), ...) {
                        ^~~~~~~~~~~
```
[R/map-analysis.R:42:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L42) *warning:* **local variable ‘dots’ assigned but may not be used**
```r
  dots <- list(...)
  ^~~~
```
[R/map-analysis.R:54:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L54) *style:* **Variable or function name should be snake_case.**
```r
  AGs <- sort(unique(colnames(m)[startsWith(colnames(m), "analysisGroup")]))
  ^~~
```
[R/map-analysis.R:56:31:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L56) *style:* **Variable or function name should be snake_case.**
```r
  ags <- lapply(AGs, function(AG) sort(na.omit(unique(m[[AG]]))))
                              ^~
```
[R/map-analysis.R:58:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L58) *style:* **Variable or function name should be snake_case.**
```r
  combosCompleted <- lapply(functionName, function(fn)
  ^~~~~~~~~~~~~~~
```
[R/map-analysis.R:60:4:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L60) *style:* **Commented code should be removed.**
```r
  #combosCompleted <- map@analysesData[[functionName]]$.Completed
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:71:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L71) *style:* **Variable or function name should be snake_case.**
```r
  combosAll <- expandAnalysisGroups(ags)
  ^~~~~~~~~
```
[R/map-analysis.R:71:16:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L71) *warning:* **no visible global function definition for ‘expandAnalysisGroups’**
```r
  combosAll <- expandAnalysisGroups(ags)
               ^~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:74:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L74) *style:* **Lines should not be more than 80 characters.**
```r
  # This is only for the first one to do, as it is just finding the columns required
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:76:42:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L76) *style:* **Variable or function name should be snake_case.**
```r
  args1 <- lapply(functionName, function(funName) {
                                         ^~~~~~~
```
[R/map-analysis.R:79:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L79) *style:* **Variable or function name should be snake_case.**
```r
    keepArgs <- unlist(lapply(args, function(arg) length(arg) > 0))
    ^~~~~~~~
```
[R/map-analysis.R:83:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L83) *style:* **Variable or function name should be snake_case.**
```r
  AGsByFunName <- lapply(functionName, function(funName) {
  ^~~~~~~~~~~~
```
[R/map-analysis.R:83:49:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L83) *style:* **Variable or function name should be snake_case.**
```r
  AGsByFunName <- lapply(functionName, function(funName) {
                                                ^~~~~~~
```
[R/map-analysis.R:88:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L88) *style:* **Variable or function name should be snake_case.**
```r
  combosAll <- Map(agsByFunName = AGsByFunName,
  ^~~~~~~~~
```
[R/map-analysis.R:90:29:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L90) *style:* **Variable or function name should be snake_case.**
```r
                   function(agsByFunName, ags) {
                            ^~~~~~~~~~~~
```
[R/map-analysis.R:91:22:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L91) *warning:* **no visible global function definition for ‘expandAnalysisGroups’**
```r
                     expandAnalysisGroups(ags[agsByFunName])
                     ^~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:94:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L94) *style:* **Variable or function name should be snake_case.**
```r
  combosToDo <- Map(cc = combosCompleted, ca = combosAll, function(cc, ca) {
  ^~~~~~~~~~
```
[R/map-analysis.R:96:32:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L96) *style:* **Commas should always have a space after.**
```r
      setDT(ca[!ca$all %in% cc,])
                               ^
```
[R/map-analysis.R:101:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L101) *style:* **Variable or function name should be snake_case.**
```r
  combosToDo <- Map(ctd = combosToDo, fn = functionName,
  ^~~~~~~~~~
```
[R/map-analysis.R:102:45:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L102) *style:* **Variable or function name should be snake_case.**
```r
                    function(ctd, fn) ctd[, functionName := fn])
                                            ^~~~~~~~~~~~
```
[R/map-analysis.R:103:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L103) *style:* **Variable or function name should be snake_case.**
```r
  combosToDoDT <- rbindlist(combosToDo)
  ^~~~~~~~~~~~
```
[R/map-analysis.R:103:19:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L103) *warning:* **no visible global function definition for ‘rbindlist’**
```r
  combosToDoDT <- rbindlist(combosToDo)
                  ^~~~~~~~~
```
[R/map-analysis.R:105:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L105) *style:* **Lines should not be more than 80 characters.**
```r
  combosToDo <- combosToDo[!unlist(lapply(combosToDo, function(ctd) NROW(ctd) == 0))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:105:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L105) *style:* **Variable or function name should be snake_case.**
```r
  combosToDo <- combosToDo[!unlist(lapply(combosToDo, function(ctd) NROW(ctd) == 0))]
  ^~~~~~~~~~
```
[R/map-analysis.R:108:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L108) *style:* **Variable or function name should be snake_case.**
```r
    funNames <- unique(combosToDoDT$functionName)
    ^~~~~~~~
```
[R/map-analysis.R:111:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    otherFormalsInFunction <- lapply(funNames, function(funName) {
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:111:57:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L111) *style:* **Variable or function name should be snake_case.**
```r
    otherFormalsInFunction <- lapply(funNames, function(funName) {
                                                        ^~~~~~~
```
[R/map-analysis.R:112:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L112) *style:* **Variable or function name should be snake_case.**
```r
      otherFormalsInFunction <- formalArgs(funName)[formalArgs(funName) %in%
      ^~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:125:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L125) *style:* **Commented code should be removed.**
```r
    # browser()
      ^~~~~~~~~
```
[R/map-analysis.R:126:11:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L126) *warning:* **no visible global function definition for ‘makeOptimalCluster’**
```r
    cl <- makeOptimalCluster(useParallel, maxNumClusters = NROW(combosToDoDT))
          ^~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:127:17:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L127) *warning:* **no visible global function definition for ‘stopCluster’**
```r
    on.exit(try(stopCluster(cl), silent = TRUE))
                ^~~~~~~~~~~
```
[R/map-analysis.R:129:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L129) *style:* **Variable or function name should be snake_case.**
```r
    combosToDoList <- split(combosToDoDT, combosToDoDT$all)
    ^~~~~~~~~~~~~~
```
[R/map-analysis.R:132:20:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L132) *style:* **Variable or function name should be snake_case.**
```r
                   funName <- combo$functionName
                   ^~~~~~~
```
[R/map-analysis.R:134:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L134) *style:* **Lines should not be more than 80 characters.**
```r
                                                   combo = combo, AGs = AGs, funName = funName)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:137:20:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L137) *style:* **Variable or function name should be snake_case.**
```r
                   fnOut <- do.call(Cache,
                   ^~~~~
```
[R/map-analysis.R:140:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L140) *style:* **Lines should not be more than 80 characters.**
```r
                                                         otherFormalsInFunction[[funName]])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:145:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L145) *style:* **Variable or function name should be snake_case.**
```r
      fromFunName <- combosToDoDT$functionName == funName
      ^~~~~~~~~~~
```
[R/map-analysis.R:147:35:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L147) *style:* **Variable or function name should be snake_case.**
```r
      map@analysesData[[funName]]$.Completed <- names(out3[fromFunName])
                                  ^~~~~~~~~~
```
[R/map-analysis.R:150:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
    message("  ", paste(functionName, collapse = ", "), " already run on all layers")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:168:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L168) *style:* **Variable or function name should be snake_case.**
```r
mapAddAnalysis <- function(map, functionName,
^~~~~~~~~~~~~~
```
[R/map-analysis.R:168:33:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L168) *style:* **Variable or function name should be snake_case.**
```r
mapAddAnalysis <- function(map, functionName,
                                ^~~~~~~~~~~~
```
[R/map-analysis.R:169:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L169) *style:* **Lines should not be more than 80 characters.**
```r
                           useParallel = getOption("map.useParallel", FALSE), ...) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:169:28:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L169) *style:* **Variable or function name should be snake_case.**
```r
                           useParallel = getOption("map.useParallel", FALSE), ...) {
                           ^~~~~~~~~~~
```
[R/map-analysis.R:171:8:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L171) *warning:* **no visible global function definition for ‘data.table’**
```r
  b <- data.table(functionName = functionName, t(dots))
       ^~~~~~~~~~
```
[R/map-analysis.R:172:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L172) *style:* **Variable or function name should be snake_case.**
```r
  prevEntry <- map@analyses$functionName == functionName
  ^~~~~~~~~
```
[R/map-analysis.R:173:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L173) *style:* **Variable or function name should be snake_case.**
```r
  purgeAnalyses <- NULL # Set default as NULL
  ^~~~~~~~~~~~~
```
[R/map-analysis.R:174:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L174) *style:* **Variable or function name should be snake_case.**
```r
  newDigest <- fastdigest::fastdigest(
  ^~~~~~~~~
```
[R/map-analysis.R:178:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L178) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
  set(b, NULL, "argHash", newDigest)
  ^~~
```
[R/map-analysis.R:179:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L179) *style:* **Variable or function name should be snake_case.**
```r
  doRbindlist <- TRUE
  ^~~~~~~~~~~
```
[R/map-analysis.R:182:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L182) *style:* **Lines should not be more than 80 characters.**
```r
      message("An analysis called ", functionName, " already added to map obj; ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:184:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L184) *style:* **Variable or function name should be snake_case.**
```r
      purgeAnalyses <- functionName
      ^~~~~~~~~~~~~
```
[R/map-analysis.R:187:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L187) *style:* **Variable or function name should be snake_case.**
```r
      doRbindlist <- FALSE
      ^~~~~~~~~~~
```
[R/map-analysis.R:188:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L188) *style:* **Lines should not be more than 80 characters.**
```r
      message("An analysis called ", functionName, " with identical function and ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:194:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L194) *style:* **Lines should not be more than 80 characters.**
```r
    map@analyses <- rbindlist(list(map@analyses, b), fill = TRUE, use.names = TRUE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:196:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L196) *style:* **Lines should not be more than 80 characters.**
```r
  map <- runMapAnalyses(map = map, purgeAnalyses = purgeAnalyses, useParallel = useParallel)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:196:10:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L196) *warning:* **no visible global function definition for ‘runMapAnalyses’**
```r
  map <- runMapAnalyses(map = map, purgeAnalyses = purgeAnalyses, useParallel = useParallel)
         ^~~~~~~~~~~~~~
```
[R/map-analysis.R:210:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L210) *style:* **Lines should not be more than 80 characters.**
```r
#'   \code{analysisGroups} i.e., \code{"analysisGroup1"} or \code{"analysisGroup2"}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:223:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L223) *style:* **Lines should not be more than 80 characters.**
```r
mapAddPostHocAnalysis <- function(map, functionName, postHocAnalysisGroups = NULL,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:223:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L223) *style:* **Variable or function name should be snake_case.**
```r
mapAddPostHocAnalysis <- function(map, functionName, postHocAnalysisGroups = NULL,
^~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:223:40:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L223) *style:* **Variable or function name should be snake_case.**
```r
mapAddPostHocAnalysis <- function(map, functionName, postHocAnalysisGroups = NULL,
                                       ^~~~~~~~~~~~
```
[R/map-analysis.R:223:54:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L223) *style:* **Variable or function name should be snake_case.**
```r
mapAddPostHocAnalysis <- function(map, functionName, postHocAnalysisGroups = NULL,
                                                     ^~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:224:35:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L224) *style:* **Variable or function name should be snake_case.**
```r
                                  postHocAnalyses = "all",
                                  ^~~~~~~~~~~~~~~
```
[R/map-analysis.R:225:35:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L225) *style:* **Variable or function name should be snake_case.**
```r
                                  useParallel = getOption("map.useParallel"),
                                  ^~~~~~~~~~~
```
[R/map-analysis.R:230:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L230) *style:* **Lines should not be more than 80 characters.**
```r
    stop("postHocAnalysisGroups cannot be NULL. It should be one of the column names ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:232:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L232) *style:* **Lines should not be more than 80 characters.**
```r
  b <- data.table(functionName = functionName, postHocAnalysisGroups = postHocAnalysisGroups,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:235:10:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L235) *warning:* **no visible global function definition for ‘data.table’**
```r
    b <- data.table(b, t(dots))
         ^~~~~~~~~~
```
[R/map-analysis.R:237:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L237) *style:* **Variable or function name should be snake_case.**
```r
  prevEntry <- map@analyses$functionName == functionName
  ^~~~~~~~~
```
[R/map-analysis.R:238:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L238) *style:* **Variable or function name should be snake_case.**
```r
  purgeAnalyses <- NULL # Set default as NULL
  ^~~~~~~~~~~~~
```
[R/map-analysis.R:239:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L239) *style:* **Variable or function name should be snake_case.**
```r
  newDigest <- fastdigest::fastdigest(
  ^~~~~~~~~
```
[R/map-analysis.R:243:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L243) *warning:* **no visible global function definition for ‘set’, Did you mean 'det'?**
```r
  set(b, NULL, "argHash", newDigest)
  ^~~
```
[R/map-analysis.R:244:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L244) *style:* **Variable or function name should be snake_case.**
```r
  doRbindlist <- TRUE
  ^~~~~~~~~~~
```
[R/map-analysis.R:247:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L247) *style:* **Lines should not be more than 80 characters.**
```r
      message("An analysis called ", functionName, " already added to map obj; ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:249:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L249) *style:* **Variable or function name should be snake_case.**
```r
      purgeAnalyses <- functionName
      ^~~~~~~~~~~~~
```
[R/map-analysis.R:252:7:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L252) *style:* **Variable or function name should be snake_case.**
```r
      doRbindlist <- FALSE
      ^~~~~~~~~~~
```
[R/map-analysis.R:253:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L253) *style:* **Lines should not be more than 80 characters.**
```r
      message("An analysis called, ", functionName, " with identical function and ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:259:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L259) *style:* **Lines should not be more than 80 characters.**
```r
    map@analyses <- rbindlist(list(map@analyses, b), fill = TRUE, use.names = TRUE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:261:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L261) *style:* **Lines should not be more than 80 characters.**
```r
  map <- runMapAnalyses(map = map, purgeAnalyses = purgeAnalyses, useParallel = useParallel)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:261:10:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L261) *warning:* **no visible global function definition for ‘runMapAnalyses’**
```r
  map <- runMapAnalyses(map = map, purgeAnalyses = purgeAnalyses, useParallel = useParallel)
         ^~~~~~~~~~~~~~
```
[R/map-analysis.R:266:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L266) *style:* **Variable or function name should be snake_case.**
```r
runMapAnalyses <- function(map, purgeAnalyses = NULL,
^~~~~~~~~~~~~~
```
[R/map-analysis.R:266:33:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L266) *style:* **Variable or function name should be snake_case.**
```r
runMapAnalyses <- function(map, purgeAnalyses = NULL,
                                ^~~~~~~~~~~~~
```
[R/map-analysis.R:267:28:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L267) *style:* **Variable or function name should be snake_case.**
```r
                           useParallel = getOption("map.useParallel")) {
                           ^~~~~~~~~~~
```
[R/map-analysis.R:268:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L268) *style:* **Variable or function name should be snake_case.**
```r
  isPostHoc <- if (is.null(map@analyses$postHoc)) {
  ^~~~~~~~~
```
[R/map-analysis.R:271:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L271) *warning:* **no visible global function definition for ‘compareNA’**
```r
    compareNA(map@analyses$postHoc, TRUE)
    ^~~~~~~~~
```
[R/map-analysis.R:276:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L276) *style:* **Variable or function name should be snake_case.**
```r
    funName <- map@analyses$functionName[!isPostHoc]
    ^~~~~~~
```
[R/map-analysis.R:277:12:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L277) *warning:* **no visible global function definition for ‘mapAnalysis’**
```r
    map <- mapAnalysis(map, funName, purgeAnalyses = purgeAnalyses)
           ^~~~~~~~~~~
```
[R/map-analysis.R:287:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L287) *style:* **Lines should not be more than 80 characters.**
```r
           forms <- forms[!forms %in% c("map", "functionName", "analysisGroups")]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:298:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L298) *style:* **Lines should not be more than 80 characters.**
```r
                                                            analysisGroups = x$postHocAnalysisGroups),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:299:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L299) *style:* **Lines should not be more than 80 characters.**
```r
                                                       unlist(as.list(x[ , forms, with = FALSE]))))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:299:73:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L299) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                                                       unlist(as.list(x[ , forms, with = FALSE]))))
                                                                        ^
```
[R/map-analysis.R:299:74:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L299) *style:* **Commas should never have a space before.**
```r
                                                       unlist(as.list(x[ , forms, with = FALSE]))))
                                                                        ~^
```
[R/map-analysis.R:313:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L313) *style:* **Variable or function name should be snake_case.**
```r
getFormalsFromMetadata <- function(metadata, combo, AGs, funName) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:313:53:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L313) *style:* **Variable or function name should be snake_case.**
```r
getFormalsFromMetadata <- function(metadata, combo, AGs, funName) {
                                                    ^~~
```
[R/map-analysis.R:313:58:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L313) *style:* **Variable or function name should be snake_case.**
```r
getFormalsFromMetadata <- function(metadata, combo, AGs, funName) {
                                                         ^~~~~~~
```
[R/map-analysis.R:314:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L314) *style:* **Lines should not be more than 80 characters.**
```r
  formalsInFunction <- formalArgs(funName)[formalArgs(funName) %in% colnames(metadata)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:314:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L314) *style:* **Variable or function name should be snake_case.**
```r
  formalsInFunction <- formalArgs(funName)[formalArgs(funName) %in% colnames(metadata)]
  ^~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:316:32:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L316) *style:* **Variable or function name should be snake_case.**
```r
  args <- lapply(AGs, function(AG) {
                               ^~
```
[R/map-analysis.R:330:4:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L330) *style:* **Commented code should be removed.**
```r
  #args <- unlist(unname(args), recursive = FALSE)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:335:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L335) *style:* **Variable or function name should be snake_case.**
```r
expandAnalysisGroups <- function(ags) {
^~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:336:3:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L336) *style:* **Variable or function name should be snake_case.**
```r
  combosAll <- NULL
  ^~~~~~~~~
```
[R/map-analysis.R:338:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L338) *style:* **Lines should not be more than 80 characters.**
```r
    combosAll <- do.call(expand.grid, args = append(list(stringsAsFactors = FALSE),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-analysis.R:338:5:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-analysis.R#L338) *style:* **Variable or function name should be snake_case.**
```r
    combosAll <- do.call(expand.grid, args = append(list(stringsAsFactors = FALSE),
    ^~~~~~~~~
```
[R/map-class.R:6:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
#' @slot metadata  \code{data.table} with columns describing metadata of map objects in
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:9:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L9) *style:* **Lines should not be more than 80 characters.**
```r
#' @slot .xData Named environment of map-type objects (e.g., \code{sf}, \code{Raster*},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:10:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#'            \code{Spatial*}. Each entry may also be simply an environment, which
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:11:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
#'            indicates where to find the object, i.e., via \code{get(layerName, envir = environment)}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:15:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
#' @slot paths File paths. A named list of paths. The default is a list of length 2,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:18:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
#' @slot analyses    A \code{data.table} or \code{data.frame} of the types of analyses to perform.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:20:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
#' @slot analysesData A \code{data.table} or \code{data.frame} of the results of the analyses.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:41:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
  #             c(layerName = "character", layerType = "character", columnNameForLabels = "character",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:42:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L42) *style:* **Lines should not be more than 80 characters.**
```r
  #               leaflet = "character", studyArea = "numeric", rasterToMatch = "logical"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:47:20:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L47) *style:* **Variable or function name should be snake_case.**
```r
          function(.Object, ...) {
                   ^~~~~~~
```
[R/map-class.R:48:13:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L48) *style:* **Variable or function name should be snake_case.**
```r
            .Object <- callNextMethod()
            ^~~~~~~
```
[R/map-class.R:49:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
            .Object@metadata <- data.table(layerName = character(), layerType = character(),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:52:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
                                           studyArea = numeric(), rasterToMatch = logical())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map-class.R:54:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map-class.R#L54) *style:* **Lines should not be more than 80 characters.**
```r
            .Object@analyses <- data.table::data.table(functionName = character())#, quotedFn = character())
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map.R:2:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map.R#L2) *style:* **Lines should not be more than 80 characters.**
```r
  utils::globalVariables(c(".", ":=", ".I", ".N", ".SD", "envir", "layerName", "objectHash"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map.R:17:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map.R#L17) *style:* **Lines should not be more than 80 characters.**
```r
#' @param layerName Required. A label for this map layer. This can be the same as
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map.R:26:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map.R#L26) *style:* **Lines should not be more than 80 characters.**
```r
#'  If \code{TRUE} or a character vector, then this layer will be added to a leaflet map.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map.R:27:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map.R#L27) *style:* **Lines should not be more than 80 characters.**
```r
#'  For \code{RasterLayer} object, this will trigger a call to \code{gdal2tiles}, making tiles.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/map.R:69:1:](https://github.com/PredictiveEcology/map/blob/461e434e85b62146701c6a32b07cf4256ab0e522/R/map.R#L69) *style:* **Lines should not be more than 80 characters.**
```r
#'                layerName = "Smaller Study Area") # adds a second studyArea within 1st
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


This was deleted for ticket #63 to avoid the issue below.

```
Running examples in ‘GPvecchia-Ex.R’ failed
The error most likely occurred in:

> ### Name: GPvecchia-package
> ### Title: What the package does (short line)
> ### Aliases: GPvecchia-package GPvecchia
> ### Keywords: package
>
> ### ** Examples
>
> temp
Error: object 'temp' not found
Execution halted
```

  Latest build did not show this error anymore and finished with `Found warnings, treating as errors (as requested).`


It was quick once I told myself "Either the payload isn't being created correctly, or the wrong payload is being used."


well then why wasn't it working? I added that because I was getting flake on all of the venv stuff.


@JuliaRegistrator register


Registration pull request created: [JuliaRegistries/General/2608](https://github.com/JuliaRegistries/General/pull/2608)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.0.2 -m "<description of version>" 447881acbba250272b53325a6947d5adef4d48bd
git push origin v1.0.2
```


I updated the bio2bel_drugbank package so you can do:

```python
import bio2bel_drugbank
manager = bio2bel_drugbank.Manager()
graph = manager.to_bel(drug_namespace='pubchem.compound')
```
and then it should mostly just do the stuff you wanted it to do. Maybe there's a better thing we can do for the names, since the pubchem names aren't really that helpful for a user


puedes omitir el salto de linea, ya que no tienes nada


* will require a total deletion and reload of the database with `bio2bel_drugbank populate --reset --force`


te falta un div que contenga todo


Successfully aliased the URL <https://apifirstmeanseverythingcom-8fam8a49v.now.sh> to the following aliases:

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clase no necesario, ya que no se utiliza


it's here: https://ncatlab.org/nlab/show/Grothendieck+fibration

it is also called cartesian functor but I suppose this name is better for functors between cartesian categories.

https://ncatlab.org/nlab/show/cartesian+functor


did you see it


Deployment failed with the following error:

~~~
Environment variables must must not be greater than 4kb when JSON-stringified (got 4.75KB)
~~~


@millerpuckette could you provide a test-case where blindly removing the last character is better than removing *all* trailing whitespace?

my tests all showed that there was no problem with removing all trailing whitepace (since Pd-core keeps track of those and will make the box stretch to the right anyhow), whereas blindly removing the last characters has repeatedly caused issues with people missing their last visible chars (iirc, they used different versions of pd-gui and pd-core; but anyhow)


The following doc(s) have been deployed to the [googleanal](https://googleanal-static-docs.pantheonsite.io/docs) Multidev environment:
- [gatsby/package-lock.json](https://github.com/pantheon-systems/documentation/commit/3fc76bc4a448f1f62dc50463159fa07f9ee36afe/gatsby/package-lock.json)


After 4 years - I have no idea :wink: Does it negatively affect anything else?


Ich lade nicht mehr voll, nur noch bis 98%, mit Battery Charge Limit.
Damit kann ich es getrost Abends anschließen und das Laden hält bei 98% auf.


7445-EvapCoolerAirLoopFlowCyclingFan (yzhou601) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


See issue #217


7445-EvapCoolerAirLoopFlowCyclingFan (yzhou601) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (9 of 9 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Successfully aliased the URL <https://my-team-react-dg9bljlbr.now.sh> to the following aliases:

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meter la clase dentro de flex-container


meterlo dentro de button container


Control of the drone by the power of thought


Woot. Bonus bug fix.


There were 2 specific issues:
* failures to pull go packages (https://travis-ci.org/phillbaker/terraform-provider-elasticsearch/jobs/567689418), [there seems to be a pattern to save a cookie in the repo to prevent these issues](https://github.com/terraform-providers/terraform-provider-statuscake/blob/ebf8436f01bcacb71e3c378f08b165dfd6dd90e6/.travis.yml#L10-L14)
* [a timeout when starting up elasticsearch in the docker container with xpack security enabled](https://travis-ci.org/phillbaker/terraform-provider-elasticsearch/jobs/567689420#L553), I did bump the retries to 30s, it's not clear if this isn't enough time or if there's something else going on


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develop (JasonGlazer) - Win64-Windows-10-VisualStudio-16: OK (1795 of 1795 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


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Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @dag-ee, @sufyanabbasi were added to conda-forge. Welcome to conda-forge!
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You should get push access to this feedstock and CI services.

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      Use branches in your fork for any changes and send a PR.
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