[R/assertions.R:214:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/assertions.R#L214) *style:* **Lines should not be more than 100 characters.**
```r
      stop("2 or more species share the same label under the 'EN_generic_short' or 'Leading' columns of sim$sppEquiv.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/assertions.R:218:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/assertions.R#L218) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/cohorts.R:47:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L47) *style:* **Lines should not be more than 100 characters.**
```r
#' @param treedFirePixelTableSinceLastDisp A data.table with at least 2 columns, \code{pixelIndex} and \code{pixelGroup}.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:71:48:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L71) *style:* **Variable and function names should not be longer than 30 characters.**
```r
                             speciesEcoregion, treedFirePixelTableSinceLastDisp = NULL,
                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:92:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L92) *style:* **Lines should not be more than 100 characters.**
```r
      message(crayon::green("  Regenerating only open pixels (e.g., likely resprouting & serotiny only)"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:93:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L93) *style:* **Lines should not be more than 100 characters.**
```r
    columnsForPG <- c("ecoregionGroup", "speciesCode", "age") # no Biomass because they all have zero
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:94:31:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L94) *style:* **Commas should always have a space after.**
```r
    cd <- newPixelCohortData[,c("pixelIndex", columnsForPG), with = FALSE]
                              ^
```
[R/cohorts.R:122:30:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L122) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    allCohortData <- cohorts[ , .(ecoregionGroup = ecoregionGroup[1],
                             ^
```
[R/cohorts.R:122:31:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L122) *style:* **Commas should never have a space before.**
```r
    allCohortData <- cohorts[ , .(ecoregionGroup = ecoregionGroup[1],
                             ~^
```
[R/cohorts.R:145:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L145) *style:* **Commented code should be removed.**
```r
  # newPixelCohortData[, sumB := sum(B, na.rm = TRUE), by = pixelGroup]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:221:3:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L221) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- speciesEcoregionLatestYear(speciesEcoregion, time)
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:222:3:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L222) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- setkey(specieseco_current[, .(speciesCode, maxANPP, maxB, ecoregionGroup)],
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:227:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L227) *style:* **Lines should not be more than 100 characters.**
```r
  #missingNewPixelCohortData <- newPixelCohortData[!specieseco_current, on = uniqueSpeciesEcoregionDefinition]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:227:4:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L227) *style:* **Commented code should be removed.**
```r
  #missingNewPixelCohortData <- newPixelCohortData[!specieseco_current, on = uniqueSpeciesEcoregionDefinition]
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:228:3:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L228) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current <- specieseco_current[!is.na(maxB)]
  ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:229:24:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L229) *style:* **Variable or function name should be lowerCamelCase.**
```r
  specieseco_current[, maxB_eco := max(maxB), by = ecoregionGroup]
                       ^~~~~~~~
```
[R/cohorts.R:230:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L230) *style:* **Lines should not be more than 100 characters.**
```r
  newPixelCohortData <- specieseco_current[newPixelCohortData, on = uniqueSpeciesEcoregionDefinition]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:236:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L236) *style:* **Commented code should be removed.**
```r
  # set(newPixelCohortData, NULL, "sumB", 0L)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:243:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L243) *style:* **Lines should not be more than 100 characters.**
```r
  set(newPixelCohortData, which(is.na(newPixelCohortData$oldSumB)), "oldSumB", 0)   ## faster than [:=]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:248:26:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L248) *style:* **Variable or function name should be lowerCamelCase.**
```r
    newPixelCohortData[, B := NULL]
                         ^
```
[R/cohorts.R:252:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L252) *style:* **Lines should not be more than 100 characters.**
```r
  set(newPixelCohortData, NULL, "B", asInteger(pmin(newPixelCohortData$maxANPP, newPixelCohortData$B)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:258:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L258) *style:* **Lines should not be more than 100 characters.**
```r
    if (isTRUE(NROW(unique(newPixelCohortData, by = uniqueCohortDefinition)) != NROW(newPixelCohortData)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:263:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L263) *style:* **Commented code should be removed.**
```r
  # cohortData[, sumB := sum(B, na.rm = TRUE), by = "pixelGroup"]  ## recalculate sumB
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:265:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L265) *style:* **Commented code should be removed.**
```r
  #   set(cohortData, NULL, "sumB", asInteger(cohortData[["sumB"]]))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:295:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L295) *style:* **Lines should not be more than 100 characters.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:295:67:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L295) *style:* **Commas should always have a space after.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
                                                                  ^
```
[R/cohorts.R:295:70:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L295) *style:* **Commented code should be removed.**
```r
  pgsStillInCDGoneFromPGM <- cohortData[whPgsStillInCDGoneFromPGM,] #setdiff(unique(cohortData$pixelGroup), unique(pgmVals$pixelGroup))
                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:296:4:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L296) *style:* **Commented code should be removed.**
```r
  #pgsStillInPGMGoneFromCD <- setdiff(unique(pgmVals$pixelGroup), unique(cohortData$pixelGroup))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:298:64:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L298) *style:* **Commas should always have a space after.**
```r
  pgsStillInPGMGoneFromCD <- pgmVals[whPgsStillInPGMGoneFromCD,]
                                                               ^
```
[R/cohorts.R:349:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L349) *style:* **Lines should not be more than 100 characters.**
```r
  # concatenate within rows -- e.g., ecoregionCode_speciesCode_age_biomass or 647_11_Abie_sp_100_2000
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:353:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L353) *style:* **Lines should not be more than 100 characters.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:353:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L353) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
      ^
```
[R/cohorts.R:353:8:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L353) *style:* **Commas should never have a space before.**
```r
  pcd[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"), by = "pixelIndex"]
      ~^
```
[R/cohorts.R:354:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L354) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  pcd[ , c("pixelGroup") := as.integer(maxPixelGroup) + as.integer(factor(uniqueComboByPixelIndex))]
      ^
```
[R/cohorts.R:354:8:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L354) *style:* **Commas should never have a space before.**
```r
  pcd[ , c("pixelGroup") := as.integer(maxPixelGroup) + as.integer(factor(uniqueComboByPixelIndex))]
      ~^
```
[R/cohorts.R:356:38:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L356) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (getOption("LandR.assertions")) { # old algorithm
                                     ^
```
[R/cohorts.R:360:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L360) *style:* **Lines should not be more than 100 characters.**
```r
    pcd[, pixelGroup2 := mapvalues(pixelGroup, from = unique(pixelGroup), to = as.character(seq_along(unique(pixelGroup))))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:366:12:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L366) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[ , c(columns2) := lapply(.SD, function(x) {
           ^
```
[R/cohorts.R:366:13:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L366) *style:* **Commas should never have a space before.**
```r
    pcdOld[ , c(columns2) := lapply(.SD, function(x) {
           ~^
```
[R/cohorts.R:370:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L370) *style:* **Lines should not be more than 100 characters.**
```r
    # concatenate within rows -- e.g., ecoregionCode_speciesCode_age_biomass or 647_11_Abie_sp_100_2000
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:371:52:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L371) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[, uniqueComboByRow := as.integer(factor( do.call(paste, as.list(.SD)))),
                                                   ^
```
[R/cohorts.R:375:12:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L375) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"),
           ^
```
[R/cohorts.R:375:13:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L375) *style:* **Commas should never have a space before.**
```r
    pcdOld[ , c("uniqueComboByPixelIndex") := paste(uniqueComboByRow, collapse = "__"),
           ~^
```
[R/cohorts.R:377:12:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L377) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    pcdOld[ , c("pixelGroup") := as.integer(maxPixelGroup) +
           ^
```
[R/cohorts.R:377:13:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L377) *style:* **Commas should never have a space before.**
```r
    pcdOld[ , c("pixelGroup") := as.integer(maxPixelGroup) +
           ~^
```
[R/cohorts.R:382:25:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L382) *style:* **Put spaces around all infix operators.**
```r
    pcdOld[, pixelGroup2:=mapvalues(pixelGroup, from = unique(pixelGroup),
                       ~^~~
```
[R/cohorts.R:430:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L430) *style:* **Variable and function names should not be longer than 30 characters.**
```r
uniqueSpeciesEcoregionDefinition <- c("speciesCode", "ecoregionGroup")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:443:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L443) *style:* **Lines should not be more than 100 characters.**
```r
  message(magenta("Pixels with non-NA cover:, ", cohortData[!is.na(cover), length(unique(pixelIndex))]))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:453:40:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L453) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," == 0): ", format(pixelsZero, big.mark = ",")))
                                       ^
```
[R/cohorts.R:453:44:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L453) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," == 0): ", format(pixelsZero, big.mark = ",")))
                                           ^
```
[R/cohorts.R:454:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L454) *style:* **Lines should not be more than 100 characters.**
```r
    pixelsBiomassNonZero <- NROW(cohortData[, any(get(val) > 0), by = "pixelIndex"][get("V1") == TRUE])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:455:40:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L455) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," > 0): ", format(pixelsBiomassNonZero, big.mark = ",")))
                                       ^
```
[R/cohorts.R:455:44:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L455) *style:* **Commas should always have a space after.**
```r
    message(magenta("Pixels with all(",val," > 0): ", format(pixelsBiomassNonZero, big.mark = ",")))
                                           ^
```
[R/cohorts.R:456:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L456) *style:* **Lines should not be more than 100 characters.**
```r
    out <- list(pixelsNA = pixelsNA, pixelsZero = pixelsZero, pixelsBiomassNonZero = pixelsBiomassNonZero)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:522:32:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L522) *style:* **Variable or function name should be lowerCamelCase.**
```r
                               availableERC_by_Sp, theUnwantedPixels,
                               ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:534:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L534) *style:* **Variable or function name should be lowerCamelCase.**
```r
      availableERC_by_Sp <- as.data.table(availableERC_by_Sp)
      ^~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:558:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L558) *style:* **Commented code should be removed.**
```r
  #   numChar <- max(nchar(availableERC_by_Sp$initialEcoregionCode), na.rm = TRUE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:560:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L560) *style:* **Lines should not be more than 100 characters.**
```r
  #                      initialEcoregionCode := paste0("1_", paddedFloatToChar(as.integer(initialEcoregionCode), numChar))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:564:16:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L564) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    if (FALSE) { # This is old section... can be deleted soon (April 10, 2019, Eliot)
               ^
```
[R/cohorts.R:579:8:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L579) *style:* **Commented code should be removed.**
```r
    #  stop("values of 34 and 35 on pixelCohortData and sim$LCC2005 don't match")
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:608:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L608) *style:* **Lines should not be more than 100 characters.**
```r
    out <- out[initialPixels != pixels] # rm pixels which are same as initialPixels --> these are known wrong
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:614:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L614) *style:* **Lines should not be more than 100 characters.**
```r
                               on = c("pixelIndex" = "initialPixels"), nomatch = NA] # join the availableERC_by_Sp which has initialEcoregionCode
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:618:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L618) *style:* **Lines should not be more than 100 characters.**
```r
                               paddedFloatToChar(as.integer(lcc), padL = numCharLCCCodes, padR = 0))]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:622:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L622) *style:* **Lines should not be more than 100 characters.**
```r
    out7 <- out5[availableERG2, on = c("speciesCode", "possERC" = "initialEcoregionCode"), nomatch = NA]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:672:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L672) *style:* **Commented code should be removed.**
```r
    # setnames(out3, c("initialPixels", "initialEcoregionCode"), c("pixelIndex", "ecoregionGroup"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:674:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L674) *style:* **Commented code should be removed.**
```r
    # out3 <- unique(out3, by = c("pixelIndex", "ecoregionGroup"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:704:6:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L704) *style:* **Commented code should be removed.**
```r
    #describeCohortData(cohortData)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:720:18:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L720) *style:* **Variable or function name should be lowerCamelCase.**
```r
    cohortData[, V1 := NULL]
                 ^~
```
[R/cohorts.R:722:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L722) *style:* **Commented code should be removed.**
```r
  # cohortData[cover == 0, `:=`(age = 0L, logAge = -Inf, B = 0)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:728:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L728) *style:* **Commented code should be removed.**
```r
  # cohortData[speciesCode == "Popu_sp", cover := asInteger(cover / 2)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:731:16:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L731) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    cohortData[ , cover := {
               ^
```
[R/cohorts.R:731:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L731) *style:* **Commas should never have a space before.**
```r
    cohortData[ , cover := {
               ~^
```
[R/cohorts.R:745:16:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L745) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    cohortData[ , B := mean(totalBiomass) * cover / 100, by = "pixelIndex"]
               ^
```
[R/cohorts.R:745:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L745) *style:* **Commas should never have a space before.**
```r
    cohortData[ , B := mean(totalBiomass) * cover / 100, by = "pixelIndex"]
               ~^
```
[R/cohorts.R:745:19:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L745) *style:* **Variable or function name should be lowerCamelCase.**
```r
    cohortData[ , B := mean(totalBiomass) * cover / 100, by = "pixelIndex"]
                  ^
```
[R/cohorts.R:747:16:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L747) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    cohortData[ , B := ceiling(B / pixelGroupBiomassClass) * pixelGroupBiomassClass]
               ^
```
[R/cohorts.R:747:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L747) *style:* **Commas should never have a space before.**
```r
    cohortData[ , B := ceiling(B / pixelGroupBiomassClass) * pixelGroupBiomassClass]
               ~^
```
[R/cohorts.R:747:19:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L747) *style:* **Variable or function name should be lowerCamelCase.**
```r
    cohortData[ , B := ceiling(B / pixelGroupBiomassClass) * pixelGroupBiomassClass]
                  ^
```
[R/cohorts.R:749:16:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L749) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    cohortData[ , totalBiomass := asInteger(totalBiomass)]
               ^
```
[R/cohorts.R:749:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L749) *style:* **Commas should never have a space before.**
```r
    cohortData[ , totalBiomass := asInteger(totalBiomass)]
               ~^
```
[R/cohorts.R:857:36:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L857) *style:* **Variable or function name should be lowerCamelCase.**
```r
  cohortData[cover > 0 & age == 0, B := 0L]
                                   ^
```
[R/cohorts.R:863:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L863) *style:* **Commented code should be removed.**
```r
  # cohortData[ , coverProp := (cover/100 * (NROW(cohortData) - 1) + 0.5) / NROW(cohortData)]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:875:22:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L875) *style:* **Variable or function name should be lowerCamelCase.**
```r
subsetDT <- function(DT, by, doSubset = TRUE) {
                     ^~
```
[R/cohorts.R:880:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L880) *style:* **Lines should not be more than 100 characters.**
```r
              "using maximum of ", sam, " samples per combination of ecoregionGroup and speciesCode. ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/cohorts.R:885:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/cohorts.R#L885) *style:* **Variable or function name should be lowerCamelCase.**
```r
      DT <- DT[a$lineNum]
      ^~
```
[R/ecoregionProducer.R:37:4:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L37) *style:* **Commented code should be removed.**
```r
  #ecoregionMapInStudy <- raster::intersect(ecoregionMapFull, fixErrors(aggregate(studyArea)))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:54:3:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L54) *style:* **Variable or function name should be lowerCamelCase.**
```r
  NAs <- rtmNAs | rstEcoregionNAs
  ^~~
```
[R/ecoregionProducer.R:71:4:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L71) *style:* **Commented code should be removed.**
```r
  #ecoregionFactorValues <- na.omit(unique(rstEcoregion[]))
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:73:4:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L73) *style:* **Commented code should be removed.**
```r
  #ecoregionTable <- raster::levels(rstEcoregion)[[1]]
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:81:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L81) *style:* **Lines should not be more than 100 characters.**
```r
    # rstEcoregion[] <- plyr::mapvalues(rstEcoregion[], from = ecoregionTable$ecoregion, to = ecoregionTable$mapcode)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:81:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L81) *style:* **Commented code should be removed.**
```r
    # rstEcoregion[] <- plyr::mapvalues(rstEcoregion[], from = ecoregionTable$ecoregion, to = ecoregionTable$mapcode)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ecoregionProducer.R:96:37:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/ecoregionProducer.R#L96) *style:* **Commas should always have a space after.**
```r
  ecoregionTable <- ecoregionTable[,.(active = "yes", mapcode, ecoregion)]
                                    ^
```
[R/LANDIS-II-tables.R:76:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L76) *style:* **Lines should not be more than 100 characters.**
```r
    sppEquiv <- data.table(utils::data("sppEquivalencies_CA", package = "LandR", envir = environment()))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:84:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L84) *style:* **Lines should not be more than 100 characters.**
```r
  speciesTable <- speciesTable[species %in% equivalentName(sppNameVector, sppEquiv, "LANDIS_traits", multi = TRUE) &
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:101:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L101) *style:* **Lines should not be more than 100 characters.**
```r
#' (\url{https://raw.githubusercontent.com/dcyr/LANDIS-II_IA_generalUseFiles/master/speciesTraits.csv}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:105:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L105) *style:* **Lines should not be more than 100 characters.**
```r
#' @param species a \code{data.table} that has species traits such as longevity, shade tolerance, etc.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:122:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L122) *style:* **Lines should not be more than 100 characters.**
```r
    sppEquiv <- data.table(utils::data("sppEquivalencies_CA", package = "LandR", envir = environment()))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:144:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L144) *style:* **Lines should not be more than 100 characters.**
```r
  speciesTableShort[species == "PSEU.MEN", longevity := 525] ## only in MC area, corresponding to var. glauca
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:153:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L153) *style:* **Lines should not be more than 100 characters.**
```r
  speciesTableShort <- speciesTableShort[species %in% equivalentName(sppNameVector, sppEquiv, "LANDIS_traits", multi = TRUE)]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:170:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L170) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/biomass-succession_test.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:190:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L190) *style:* **Commented code should be removed.**
```r
  maxcol <- 13 #max(count.fields(file.path(dPath, "species.txt"), sep = ""))
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:211:13:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L211) *style:* **Only use double-quotes.**
```r
  species[, ':='(seeddistance_eff = gsub(",", "", seeddistance_eff),
            ^~~~
```
[R/LANDIS-II-tables.R:211:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L211) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(seeddistance_eff = gsub(",", "", seeddistance_eff),
                ^
```
[R/LANDIS-II-tables.R:224:18:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L224) *style:* **Only use double-quotes.**
```r
  speciesAddon[, ':='(leaflongevity = as.numeric(leaflongevity),
                 ^~~~
```
[R/LANDIS-II-tables.R:224:22:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L224) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesAddon[, ':='(leaflongevity = as.numeric(leaflongevity),
                     ^
```
[R/LANDIS-II-tables.R:236:13:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L236) *style:* **Only use double-quotes.**
```r
  species[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
            ^~~~
```
[R/LANDIS-II-tables.R:236:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L236) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                ^
```
[R/LANDIS-II-tables.R:240:13:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L240) *style:* **Only use double-quotes.**
```r
  species[, ':='(species1 = NULL, species2 = NULL)]
            ^~~~
```
[R/LANDIS-II-tables.R:240:17:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L240) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  species[, ':='(species1 = NULL, species2 = NULL)]
                ^
```
[R/LANDIS-II-tables.R:268:39:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L268) *style:* **Commas should always have a space after.**
```r
  mainInput <- mainInput[col1 != ">>",]
                                      ^
```
[R/LANDIS-II-tables.R:278:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L278) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/ecoregion.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:295:16:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L295) *style:* **Commented code should be removed.**
```r
  maxcol <- 5 #max(count.fields(file.path(dPath, "ecoregions.txt"), sep = ""))
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:311:47:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L311) *style:* **Commas should always have a space after.**
```r
  ecoregion <- ecoregion[col1 != "LandisData",]
                                              ^
```
[R/LANDIS-II-tables.R:312:39:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L312) *style:* **Commas should always have a space after.**
```r
  ecoregion <- ecoregion[col1 != ">>",]
                                      ^
```
[R/LANDIS-II-tables.R:324:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L324) *style:* **Lines should not be more than 100 characters.**
```r
#' \url{https://github.com/LANDIS-II-Foundation/Extensions-Succession/master/biomass-succession-archive/trunk/tests/v6.0-2.0/biomass-succession-dynamic-inputs_test.txt"}).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/LANDIS-II-tables.R:356:61:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L356) *style:* **Commas should always have a space after.**
```r
  speciesEcoregion <- speciesEcoregion[col1 != "LandisData",]
                                                            ^
```
[R/LANDIS-II-tables.R:357:53:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L357) *style:* **Commas should always have a space after.**
```r
  speciesEcoregion <- speciesEcoregion[col1 != ">>",]
                                                    ^
```
[R/LANDIS-II-tables.R:368:22:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L368) *style:* **Only use double-quotes.**
```r
  speciesEcoregion[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                     ^~~~
```
[R/LANDIS-II-tables.R:368:26:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L368) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesEcoregion[, ':='(species = paste0(toupper(substring(species1, 1, 1)),
                         ^
```
[R/LANDIS-II-tables.R:371:22:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L371) *style:* **Only use double-quotes.**
```r
  speciesEcoregion[, ':='(species1 = NULL, species2 = NULL)]
                     ^~~~
```
[R/LANDIS-II-tables.R:371:26:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/LANDIS-II-tables.R#L371) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  speciesEcoregion[, ':='(species1 = NULL, species2 = NULL)]
                         ^
```
[R/maps.R:22:29:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L22) *style:* **Variable or function name should be lowerCamelCase.**
```r
defineFlammable <- function(LandCoverClassifiedMap = NULL,
                            ^~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:177:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L177) *style:* **Lines should not be more than 100 characters.**
```r
vegTypeMapGenerator.RasterStack <- function(x, ..., doAssertion = getOption("LandR.doAssertion", TRUE)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:177:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L177) *style:* **Variable and function names should not be longer than 30 characters.**
```r
vegTypeMapGenerator.RasterStack <- function(x, ..., doAssertion = getOption("LandR.doAssertion", TRUE)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:177:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L177) *style:* **Variable or function name should be lowerCamelCase.**
```r
vegTypeMapGenerator.RasterStack <- function(x, ..., doAssertion = getOption("LandR.doAssertion", TRUE)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:179:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L179) *style:* **Lines should not be more than 100 characters.**
```r
  cohortTable <- suppressMessages(createCohortData(pixelTable, rescale = FALSE, doAssertion = doAssertion))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:189:14:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L189) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if (FALSE) { # This is the old version -- Eliot & Alex July 11, 2019
             ^
```
[R/maps.R:199:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L199) *style:* **Lines should not be more than 100 characters.**
```r
      whMixed <- which(sum(speciesStack < (100 * vegLeadingProportion))[] == numLayers(speciesStack))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:200:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L200) *style:* **Variable or function name should be lowerCamelCase.**
```r
      MixedRas <- speciesStack[[1]]
      ^~~~~~~~
```
[R/maps.R:204:20:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L204) *style:* **Variable or function name should be lowerCamelCase.**
```r
      speciesStack$Mixed <- MixedRas
                   ^~~~~
```
[R/maps.R:233:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L233) *style:* **Variable or function name should be lowerCamelCase.**
```r
vegTypeMapGenerator.data.table <- function(x, pixelGroupMap, vegLeadingProportion = 0.8,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:280:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L280) *style:* **Lines should not be more than 100 characters.**
```r
    # 1. Find length of each pixelGroup -- don't include pixelGroups in "by" that have only 1 cohort: N = 1
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:290:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L290) *style:* **Lines should not be more than 100 characters.**
```r
      pixelGroupData1[N != 1, (totalOfLeadingBasedOn) := sum(cover, na.rm = TRUE), by = pixelGroupColName]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:291:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L291) *style:* **Lines should not be more than 100 characters.**
```r
      pixelGroupData1 <- pixelGroupData1[, list(sum(cover, na.rm = TRUE), totalcover[1]), by = pgdAndSc]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:293:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L293) *style:* **Lines should not be more than 100 characters.**
```r
      pixelGroupData1[N != 1, (totalOfLeadingBasedOn) := sum(B, na.rm = TRUE), by = pixelGroupColName]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:296:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L296) *style:* **Lines should not be more than 100 characters.**
```r
    setnames(pixelGroupData1, old = c("V1", "V2"), new = c(speciesOfLeadingBasedOn, totalOfLeadingBasedOn))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:315:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L315) *style:* **Commented code should be removed.**
```r
    # setorderv(x, pixelGroupColName)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:318:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L318) *style:* **Variable or function name should be lowerCamelCase.**
```r
    N <- rep.int(pixelGroupData2$N, pixelGroupData2$N)
    ^
```
[R/maps.R:322:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L322) *style:* **Lines should not be more than 100 characters.**
```r
        totalBNot1 <- cohortData2[!wh1, list(N = .N, totalcover = sum(cover, na.rm = TRUE)), by = pixelGroupColName]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:324:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L324) *style:* **Lines should not be more than 100 characters.**
```r
        totalBNot1 <- cohortData2[!wh1, list(N = .N, totalB = sum(B, na.rm = TRUE)), by = pixelGroupColName]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:331:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L331) *style:* **Variable or function name should be lowerCamelCase.**
```r
      GT1 <- (b > 1)
      ^~~
```
[R/maps.R:336:10:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L336) *style:* **Commented code should be removed.**
```r
        #pixelGroupData2List[[2]] <- cohortData2[!GT1]
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:337:10:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L337) *style:* **Commented code should be removed.**
```r
        #pixelGroupData2 <- rbindlist(pixelGroupData2List)
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:339:11:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L339) *style:* **Commented code should be removed.**
```r
        # cols <- c(pixelGroupColName, "speciesCode", "speciesProportion")
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:340:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L340) *style:* **Lines should not be more than 100 characters.**
```r
        set(cohortData2, NULL, "speciesProportion", cohortData2[[leadingBasedOn]] / cohortData2[[totalOfLeadingBasedOn]])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:341:11:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L341) *style:* **Commented code should be removed.**
```r
        # pixelGroupData2[[NROW(pixelGroupData2) + 1]] <- cohortData2[!GT1, ..cols]
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:399:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L399) *style:* **Lines should not be more than 100 characters.**
```r
    ## 2. sort on pixelGroup and speciesProportion, reverse so that 1st row of each pixelGroup is the largest
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:413:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L413) *style:* **Commented code should be removed.**
```r
    # a2 <- Sys.time()
      ^~~~~~~~~~~~~~~~
```
[R/maps.R:414:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L414) *style:* **Lines should not be more than 100 characters.**
```r
    # pixelGroupData2 <- pixelGroupData[, list(mixed = all(speciesProportion < vegLeadingProportion),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:417:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L417) *style:* **Commented code should be removed.**
```r
    # pixelGroupData2[mixed == TRUE, leading := "Mixed"]
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:418:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L418) *style:* **Commented code should be removed.**
```r
    # b2 <- Sys.time()
      ^~~~~~~~~~~~~~~~
```
[R/maps.R:444:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L444) *style:* **Variable or function name should be lowerCamelCase.**
```r
      GT1 <- b > 1
      ^~~
```
[R/maps.R:461:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L461) *style:* **Lines should not be more than 100 characters.**
```r
    pixelGroupData3 <- pixelGroupData3[, .SD[1], by = pixelGroupColName] ## sp. w/ highest prop. per pixelGroup
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:469:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L469) *style:* **Lines should not be more than 100 characters.**
```r
  if ("pixelIndex" %in% colnames(pixelGroupData3)) { #(!any(duplicated(pixelGroupData3[[pixelGroupColName]]))) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:469:52:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L469) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  if ("pixelIndex" %in% colnames(pixelGroupData3)) { #(!any(duplicated(pixelGroupData3[[pixelGroupColName]]))) {
                                                   ^
```
[R/maps.R:519:14:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L519) *style:* **Variable or function name should be lowerCamelCase.**
```r
    pgTest[, Type := equivalentName(speciesCode, sppEquiv, "Type")]
             ^~~~
```
[R/maps.R:657:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L657) *style:* **Lines should not be more than 100 characters.**
```r
  ## select which archives/targetFiles to extract -- because there was "multi" above, need unique here
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:664:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L664) *style:* **Lines should not be more than 100 characters.**
```r
                    archive2 = file.path(dPath, paste0("NFI_MODIS250m_kNN_Species_", kNNnames, "_v0.zip")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:667:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L667) *style:* **Lines should not be more than 100 characters.**
```r
  if (!all(reproducible::basename2(file_path_sans_ext(names(archives))) == file_path_sans_ext(targetFiles)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:674:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L674) *style:* **Lines should not be more than 100 characters.**
```r
    message("This looks like a lot of species; did you mean to pass only a subset of this to sppEquiv?",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:692:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L692) *style:* **Lines should not be more than 100 characters.**
```r
                         prepInputs, quick = TRUE) # don't need to digest all the "targetFile" and "archives"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:694:79:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L694) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  noDataLayers <- sapply(speciesLayers, function(xx) if (maxValue(xx) < thresh ) FALSE else TRUE)
                                                                              ^
```
[R/maps.R:697:76:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L697) *style:* **Commas should always have a space after.**
```r
    message("removing ", sum(!noDataLayers), " species because they had <",thresh,
                                                                           ^
```
[R/maps.R:699:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L699) *style:* **Lines should not be more than 100 characters.**
```r
            "\n  These species are retained (and could be further culled manually, if desired):\n  ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:721:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L721) *style:* **Commented code should be removed.**
```r
  # layerData <- Cache(sapply, X = speciesLayers, function(xx) sum(xx[] > 0, na.rm = TRUE))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:723:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L723) *style:* **Commented code should be removed.**
```r
  # ## remove layers that had < thresh pixels with biomass
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:724:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L724) *style:* **Commented code should be removed.**
```r
  # belowThresh <- layerData < thresh
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:726:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L726) *style:* **Commented code should be removed.**
```r
  #   message(names(belowThresh)[belowThresh], " was removed because it had no data")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:727:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L727) *style:* **Commented code should be removed.**
```r
  #   speciesLayers[belowThresh] <- NULL
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/maps.R:826:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L826) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRastName <- basename(tempfile(fileext = ".tif"))
      ^~~~~~~~~~
```
[R/maps.R:828:9:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L828) *style:* **Variable or function name should be lowerCamelCase.**
```r
        LQCurName <- basename(tempfile(fileext = ".tif"))
        ^~~~~~~~~
```
[R/maps.R:835:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L835) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRastInHQcrs <- projectExtent(lowQualityStack, crs = crs(highQualityStack))
      ^~~~~~~~~~~~~
```
[R/maps.R:848:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L848) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRast <- raster(LQRastName)
      ^~~~~~
```
[R/maps.R:866:9:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L866) *style:* **Variable or function name should be lowerCamelCase.**
```r
        HQRast <- raster(tmpHQName)
        ^~~~~~
```
[R/maps.R:871:9:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L871) *style:* **Variable or function name should be lowerCamelCase.**
```r
        HQRast <- highQualityStack[[SPP]]
        ^~~~~~
```
[R/maps.R:874:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L874) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRast <- lowQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:875:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L875) *style:* **Variable or function name should be lowerCamelCase.**
```r
      HQRast <- highQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:882:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L882) *style:* **Variable or function name should be lowerCamelCase.**
```r
    NAs <- is.na(HQRast[])
    ^~~
```
[R/maps.R:886:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L886) *style:* **Variable or function name should be lowerCamelCase.**
```r
    HQRast <- writeRaster(HQRast, datatype = "INT1U",
    ^~~~~~
```
[R/maps.R:896:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L896) *style:* **Variable or function name should be lowerCamelCase.**
```r
      HQRast <- highQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:900:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L900) *style:* **Variable or function name should be lowerCamelCase.**
```r
      LQRast <- lowQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:904:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L904) *style:* **Variable or function name should be lowerCamelCase.**
```r
      HQRast <- highQualityStack[[SPP]]
      ^~~~~~
```
[R/maps.R:936:4:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/maps.R#L936) *style:* **Commented code should be removed.**
```r
  #names(sppMerges) <- equivalentName(names(sppMerges), sppEquiv,  column = sppEquivCol)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/misc.R:23:1:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/misc.R#L23) *style:* **Lines should not be more than 100 characters.**
```r
#' Essentially a wrapper around \code{round}, rather than \code{truncate}, which is what \code{as.integer}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:47:25:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L47) *style:* **Variable or function name should be lowerCamelCase.**
```r
overlayLCCs <- function(LCCs, forestedList, outputLayer,
                        ^~~~
```
[R/overlayLCCs.R:48:25:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L48) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        NAcondition, NNcondition, remapTable = NULL,
                        ^~~~~~~~~~~
```
[R/overlayLCCs.R:48:38:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L48) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        NAcondition, NNcondition, remapTable = NULL,
                                     ^~~~~~~~~~~
```
[R/overlayLCCs.R:49:43:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L49) *style:* **Variable or function name should be lowerCamelCase.**
```r
                        classesToReplace, availableERC_by_Sp,
                                          ^~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:65:5:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L65) *style:* **Variable or function name should be lowerCamelCase.**
```r
    LCCs <- stack(LCCs)
    ^~~~
```
[R/overlayLCCs.R:81:7:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L81) *style:* **Variable or function name should be lowerCamelCase.**
```r
      availableERC_by_Sp <- data.table(initialEcoregionCode = LCCs[[outputLayer]][])
      ^~~~~~~~~~~~~~~~~~
```
[R/overlayLCCs.R:90:14:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L90) *style:* **Variable or function name should be lowerCamelCase.**
```r
        dt[, NAs := eval(parse(text = NAcondition)), with = TRUE]
             ^~~
```
[R/overlayLCCs.R:92:14:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L92) *style:* **Variable or function name should be lowerCamelCase.**
```r
        dt[, NAs := NULL]
             ^~~
```
[R/overlayLCCs.R:96:14:](https://github.com/PredictiveEcology/LandR/blob/b440d23a6d1e90de01b3a4bdeac5d8ecff9b1e22/R/overlayLCCs.R#L96) *style:* **Variable or function name should be lowerCamelCase.**
```r
        dt[, NNcondition := eval(parse(text = NNcondition))]
             ^~~~~~~~~~~
```


import numpy as np
import pandas as pd


TeamCity Identity and Access Management / identity-hostedpages [Build 662-IDAM-256-Refactor-un](https://teamcity.nice.org.uk/viewLog.html?buildId=57058&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) outcome was **SUCCESS**
Summary: Tests passed: 63 Build time: 00:05:03


This doesn't make any difference, but the world folders are going to be less ugly now


Successfully aliased the URL <https://dimibamboo-fl21mfhkg.now.sh> to the following aliases:

* https://bamboo.dimigo.dev
* https://dimibamboo.a1p4ca.now.sh
* https://dimibamboo-git-master.a1p4ca.now.sh


This change may cause deadlock. I'm trying to solve it in a new PR.


`<blink>`👀`</blink>`


此次push中含有一些对原有约定约定俗成变量的抛弃，后面考虑了取回


```
def take_volume(_volume = 1)
end
```


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


How about the following command to make sure that the folder is empty?
rm -r -f dist/*


7409-UnitarySystem-water-cooling-coil-shows-HumRatMax-SPM-not-found (rraustad) - x86_64-MacOS-10.13-clang: OK (2459 of 2459 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


thanks!


Successfully aliased the URL <https://rahwnwebsite-db4l15i4t.now.sh> to the following aliases:

* https://rahwn.com
* https://www.rahwn.com
* https://rahwnwebsite.zarazas.now.sh
* https://rahwnwebsite-git-master.zarazas.now.sh


I wish I knew when it happen, deleted was for me the only case of an undefined doc :/


I don't know about that. By the way above error is for Symfony 4.3.


Did this fix https://github.com/google/process.dart/commit/57a88cd4b8f8e881a11375c7d94c8fc9df4bbb3e solve this issue? It looks like there was also a Dart VM change that could have been involved: https://dart-review.googlesource.com/c/sdk/+/112267


CloudFlare, not Cloudfront...


yes, indeed. Done


I really appreciate your work, but you should know that I'm working on an official SkyBlock update with built-in forms, and it's probably going to be available soon! I hope this doesn't bother you.


Do you have any suggestions on what could be better?
It's still an improvement from what we had before https://github.com/NixOS/nixpkgs/commit/4908d382ae1eb9f618ea8745cb6794db1dba952


Does this fix #4?


Co-authored-by: bpdavitt <bpdavitt@gmail.com>


login/index.gsp now validates email address before submitting login form.
passwordReset/getNew.gsp now validates new passwords:

Must be at least 8 characters long.
If 16 or more characters, no restrictions.
If 8-15 characters, must contain at least one lowercase letter (a-z) and one digit (0-9).


Rebase.


I'm not 100% sure this is the best way, but definitely 1) we want Draft commands available across other workbenches and 2) we want it to be easy, ie. just one "import DraftTools" to create them all... We might get further, better ideas on how to achieve that...


Successfully aliased the URL <https://cdb-j3vfu1snx.now.sh> to the following aliases:

* https://cdb.dev
* https://debotton.dev
* https://debotton.io
* https://cdb.cdebotton.now.sh
* https://cdb-git-master.cdebotton.now.sh


Yep, my fault. Fixed in https://github.com/imgproxy/imgproxy/commit/7f95569dcf087c6ff0858ce73119bbeb86f672ba


Is this extension method still needed?


Successfully aliased the URL <https://tji-nextjs-po0qzqjbm.now.sh> to the following aliases:

* https://tji-nextjs.now.sh
* https://tji-nextjs.evaruth.now.sh
* https://tji-nextjs-git-master.evaruth.now.sh


PRobably didn't mean to commit this?