[inst/unitTests/test_convertMsp2Spectra.R:1:35:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L1) *style:* **Put spaces around all infix operators.**
```r
data("convertMsp2Spectra", package="MetCirc")
                                 ~^~
```
[inst/unitTests/test_convertMsp2Spectra.R:2:30:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L2) *style:* **Put spaces around all infix operators.**
```r
spl <- convertMsp2Spectra(msp=msp2spectra)
                            ~^~
```
[inst/unitTests/test_convertMsp2Spectra.R:4:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L4) *style:* **Variable and function names should not use underscores.**
```r
test_convertMsp2Spectra <- function() {
^~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:4:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L4) *style:* **Variable and function name style should be snake_case.**
```r
test_convertMsp2Spectra <- function() {
^~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:5:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L5) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(length(spl), 22)
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:5:24:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L5) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(length(spl), 22)
                       ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:6:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L6) *style:* **Lines should not be more than 80 characters.**
```r
    checkEquals(is(spl), c("Spectra", "SimpleList", "List", "Vector", "list_OR_List", "Annotated", "vector_OR_Vector"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:6:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L6) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(is(spl), c("Spectra", "SimpleList", "List", "Vector", "list_OR_List", "Annotated", "vector_OR_Vector"))
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:6:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L6) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(is(spl), c("Spectra", "SimpleList", "List", "Vector", "list_OR_List", "Annotated", "vector_OR_Vector"))
                   ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:7:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L7) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(dim(spl@elementMetadata), c(22, 1))
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:7:21:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L7) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(dim(spl@elementMetadata), c(22, 1))
                    ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:8:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L8) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.character(spl@elementMetadata$names))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:8:28:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L8) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.character(spl@elementMetadata$names))
                           ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:9:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L9) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(spl@elementType, "Spectrum")
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:9:17:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L9) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(spl@elementType, "Spectrum")
                ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:10:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L10) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(spl@metadata, list())
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:10:17:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L10) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(spl@metadata, list())
                ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:11:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L11) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.list(spl@listData))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:11:23:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L11) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.list(spl@listData))
                      ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:12:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L12) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(is(spl@listData[[1]]), c("Spectrum2", "Spectrum", "Versioned"))
    ^~~~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:12:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L12) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkEquals(is(spl@listData[[1]]), c("Spectrum2", "Spectrum", "Versioned"))
                   ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:13:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L13) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.numeric(spl@listData[[1]]@intensity))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:13:26:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L13) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.numeric(spl@listData[[1]]@intensity))
                         ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:14:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L14) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.numeric(spl@listData[[1]]@mz))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:14:26:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L14) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.numeric(spl@listData[[1]]@mz))
                         ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:15:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L15) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.numeric(spl@listData[[1]]@precursorMz))
    ^~~~~~~~~
```
[inst/unitTests/test_convertMsp2Spectra.R:15:26:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L15) *warning:* **no visible binding for global variable ‘spl’, Did you mean 'stl'?**
```r
    checkTrue(is.numeric(spl@listData[[1]]@precursorMz))
                         ^~~
```
[inst/unitTests/test_convertMsp2Spectra.R:18:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_convertMsp2Spectra.R#L18) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[inst/unitTests/test_linkDf.R:3:24:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L3) *style:* **Put spaces around all infix operators.**
```r
data("spectra", package="MetCirc")
                      ~^~
```
[inst/unitTests/test_linkDf.R:4:24:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L4) *style:* **Trailing whitespace is superfluous.**
```r
## use only a selection
                       ^
```
[inst/unitTests/test_linkDf.R:6:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L6) *style:* **Variable and function names should not use underscores.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:6:67:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L6) *style:* **Commas should always have a space after.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
                                                                  ^
```
[inst/unitTests/test_linkDf.R:7:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L7) *style:* **Variable and function name style should be snake_case.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:7:53:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L7) *style:* **Put spaces around all infix operators.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                   ~^~
```
[inst/unitTests/test_linkDf.R:7:75:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                                          ^~
```
[inst/unitTests/test_linkDf.R:9:56:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L9) *style:* **Put spaces around all infix operators.**
```r
inds <- MetCirc:::spectraCond(spectra_tissue, condition=condition)
                                                      ~^~
```
[inst/unitTests/test_linkDf.R:10:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L10) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
^~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:10:40:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L10) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                       ^
```
[inst/unitTests/test_linkDf.R:10:41:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L10) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                        ^~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:11:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L11) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- inds_match[!is.na(inds_match)]; x[inds_match]})
^~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:12:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L12) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- lapply(seq_along(inds_match),
^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:12:43:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L12) *style:* **Trailing whitespace is superfluous.**
```r
inds_cond <- lapply(seq_along(inds_match),
                                          ^
```
[inst/unitTests/test_linkDf.R:15:53:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L15) *style:* **Put spaces around all infix operators.**
```r
            paste(condition[x], inds_match[[x]], sep="_")
                                                   ~^~
```
[inst/unitTests/test_linkDf.R:18:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L18) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- unique(unlist(inds_cond))
^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:23:29:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L23) *style:* **Commas should always have a space after.**
```r
ndps <- as.numeric(link0df[,"similarity"])
                            ^
```
[inst/unitTests/test_linkDf.R:25:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L25) *style:* **Variable and function names should not use underscores.**
```r
test_createLink0df <- function() {
^~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:25:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L25) *style:* **Variable and function name style should be snake_case.**
```r
test_createLink0df <- function() {
^~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:26:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L26) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(dim(link0df)[2], 5)
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:26:21:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L26) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkEquals(dim(link0df)[2], 5)
                    ^~~~~~~
```
[inst/unitTests/test_linkDf.R:27:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L27) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.data.frame(link0df))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:27:29:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L27) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkTrue(is.data.frame(link0df))
                            ^~~~~~~
```
[inst/unitTests/test_linkDf.R:29:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
        colnames(link0df) == c("group1", "spectrum1", "group2", "spectrum2", "similarity")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:31:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L31) *style:* **Lines should not be more than 80 characters.**
```r
        all(unique(c(as.character(link0df$group1), as.character(link0df$group2))) %in% unique(group)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:33:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L33) *style:* **Lines should not be more than 80 characters.**
```r
        all(unique(c(as.character(link0df$name1), as.character(link0df$name2))) %in% unique(inds_cond)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:34:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L34) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(all(0 < ndps & ndps <= 1))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:34:23:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L34) *warning:* **no visible binding for global variable ‘ndps’, Did you mean 'nls'?**
```r
    checkTrue(all(0 < ndps & ndps <= 1))
                      ^~~~
```
[inst/unitTests/test_linkDf.R:34:23:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L34) *warning:* **no visible binding for global variable ‘ndps’, Did you mean 'nls'?**
```r
    checkTrue(all(0 < ndps & ndps <= 1))
                      ^~~~
```
[inst/unitTests/test_linkDf.R:35:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L35) *style:* **Variable and function names should not use underscores.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:35:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:47:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                              ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:37:63:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L37) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                                              ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:38:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L38) *style:* **Variable and function names should not use underscores.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:38:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L38) *style:* **Variable and function name style should be snake_case.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:47:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                              ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:40:63:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L40) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                                              ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:41:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L41) *style:* **Variable and function names should not use underscores.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:41:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L41) *style:* **Variable and function name style should be snake_case.**
```r
    simMat_mock <- similarityMat
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:47:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                              ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:43:63:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L43) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkException(createLink0df(simMat_mock, spectra_tissue, condition))
                                                              ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *style:* **Variable and function name style should be snake_case.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
    ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:22:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *warning:* **no visible global function definition for ‘compare_Spectra’**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                     ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:38:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                     ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:62:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *style:* **Put spaces around all infix operators.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                                            ~^~
```
[inst/unitTests/test_linkDf.R:44:63:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *warning:* **no visible binding for global variable ‘normalizeddotproduct’**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                                              ^~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:44:84:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L44) *style:* **Trailing whitespace is superfluous.**
```r
    similarityMat <- compare_Spectra(spectra_tissue[1:2], fun=normalizeddotproduct)
                                                                                ^~
```
[inst/unitTests/test_linkDf.R:45:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:29:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible global function definition for ‘createLink0df’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
                            ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:58:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible binding for global variable ‘spectra_tissue’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
                                                         ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:45:74:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L45) *warning:* **no visible binding for global variable ‘condition’**
```r
    checkTrue(is.data.frame(createLink0df(similarityMat, spectra_tissue, condition)))
                                                                         ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:50:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L50) *style:* **Variable and function names should not use underscores.**
```r
test_thresholdLinkDf <- function() {
^~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:50:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
test_thresholdLinkDf <- function() {
^~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:51:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible global function definition for ‘checkEquals’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
    ^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:51:21:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
                    ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:51:37:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
                                    ^~~~~~~
```
[inst/unitTests/test_linkDf.R:51:37:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L51) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkEquals(dim(thresholdLinkDf(link0df, 0, 1)), dim(link0df))
                                    ^~~~~~~
```
[inst/unitTests/test_linkDf.R:52:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L52) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(similarityMat, 0, 1))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:52:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L52) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(similarityMat, 0, 1))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:52:36:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L52) *warning:* **no visible binding for global variable ‘similarityMat’**
```r
    checkException(thresholdLinkDf(similarityMat, 0, 1))
                                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:53:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L53) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(similarityMat, 0.6, 0.5))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:53:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L53) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(similarityMat, 0.6, 0.5))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:53:36:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L53) *warning:* **no visible binding for global variable ‘similarityMat’**
```r
    checkException(thresholdLinkDf(similarityMat, 0.6, 0.5))
                                   ^~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:54:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L54) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(link0df, 1.05, 1.1))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:54:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L54) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(link0df, 1.05, 1.1))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:54:36:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L54) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkException(thresholdLinkDf(link0df, 1.05, 1.1))
                                   ^~~~~~~
```
[inst/unitTests/test_linkDf.R:56:52:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L56) *style:* **Trailing whitespace is superfluous.**
```r
        dim(thresholdLinkDf(link0df, 0.2, 1))[1] >=
                                                   ^
```
[inst/unitTests/test_linkDf.R:58:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L58) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(thresholdLinkDf(link0df, 0.9, 0.1))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:58:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L58) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkException(thresholdLinkDf(link0df, 0.9, 0.1))
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:58:36:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L58) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkException(thresholdLinkDf(link0df, 0.9, 0.1))
                                   ^~~~~~~
```
[inst/unitTests/test_linkDf.R:59:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L59) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(nrow(thresholdLinkDf(link0df, 0.999, 1)) == 1)
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:59:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L59) *warning:* **no visible global function definition for ‘thresholdLinkDf’**
```r
    checkTrue(nrow(thresholdLinkDf(link0df, 0.999, 1)) == 1)
                   ^~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:59:36:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L59) *warning:* **no visible binding for global variable ‘link0df’**
```r
    checkTrue(nrow(thresholdLinkDf(link0df, 0.999, 1)) == 1)
                                   ^~~~~~~
```
[inst/unitTests/test_linkDf.R:64:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
tLinkDf1 <- thresholdLinkDf(link0df, 0.9, 1)
^~~~~~~~
```
[inst/unitTests/test_linkDf.R:65:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L65) *style:* **Variable and function name style should be snake_case.**
```r
tLinkDf2 <- createLinkDf(similarityMat, spectra_tissue, condition, 0.9, 1)
^~~~~~~~
```
[inst/unitTests/test_linkDf.R:67:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L67) *style:* **Variable and function names should not use underscores.**
```r
test_createLinkDf <- function() {
^~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:67:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L67) *style:* **Variable and function name style should be snake_case.**
```r
test_createLinkDf <- function() {
^~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:68:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L68) *warning:* **no visible global function definition for ‘checkTrue’**
```r
    checkTrue(identical(tLinkDf1, tLinkDf2))
    ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:68:25:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L68) *warning:* **no visible binding for global variable ‘tLinkDf1’**
```r
    checkTrue(identical(tLinkDf1, tLinkDf2))
                        ^~~~~~~~
```
[inst/unitTests/test_linkDf.R:68:35:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L68) *warning:* **no visible binding for global variable ‘tLinkDf2’**
```r
    checkTrue(identical(tLinkDf1, tLinkDf2))
                                  ^~~~~~~~
```
[inst/unitTests/test_linkDf.R:73:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L73) *style:* **Variable and function name style should be snake_case.**
```r
cutLDFInter <- cutLinkDf(tLinkDf1, type="inter")
^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:73:40:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L73) *style:* **Put spaces around all infix operators.**
```r
cutLDFInter <- cutLinkDf(tLinkDf1, type="inter")
                                      ~^~
```
[inst/unitTests/test_linkDf.R:74:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L74) *style:* **Variable and function name style should be snake_case.**
```r
cutLDFIntra <- cutLinkDf(tLinkDf1, type="intra")
^~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:74:40:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L74) *style:* **Put spaces around all infix operators.**
```r
cutLDFIntra <- cutLinkDf(tLinkDf1, type="intra")
                                      ~^~
```
[inst/unitTests/test_linkDf.R:76:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L76) *style:* **Variable and function names should not use underscores.**
```r
test_cutLinkDf <- function() {
^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:76:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L76) *style:* **Variable and function name style should be snake_case.**
```r
test_cutLinkDf <- function() {
^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:80:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L80) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(cutLinkDf(tLinkDf1, type = "foo"))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_linkDf.R:80:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L80) *warning:* **no visible global function definition for ‘cutLinkDf’**
```r
    checkException(cutLinkDf(tLinkDf1, type = "foo"))
                   ^~~~~~~~~
```
[inst/unitTests/test_linkDf.R:80:30:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L80) *warning:* **no visible binding for global variable ‘tLinkDf1’**
```r
    checkException(cutLinkDf(tLinkDf1, type = "foo"))
                             ^~~~~~~~
```
[inst/unitTests/test_linkDf.R:82:49:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L82) *style:* **Trailing whitespace is superfluous.**
```r
        all(unlist(lapply(1:dim(cutLDFInter)[1],
                                                ^
```
[inst/unitTests/test_linkDf.R:83:53:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L83) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFInter[x,1] != cutLDFInter[x,3])))
                                                    ^
```
[inst/unitTests/test_linkDf.R:83:73:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L83) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFInter[x,1] != cutLDFInter[x,3])))
                                                                        ^
```
[inst/unitTests/test_linkDf.R:86:49:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L86) *style:* **Trailing whitespace is superfluous.**
```r
        all(unlist(lapply(1:dim(cutLDFIntra)[1],
                                                ^
```
[inst/unitTests/test_linkDf.R:87:53:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L87) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFIntra[x,1] == cutLDFIntra[x,3])))
                                                    ^
```
[inst/unitTests/test_linkDf.R:87:73:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_linkDf.R#L87) *style:* **Commas should always have a space after.**
```r
                          function(x) cutLDFIntra[x,1] == cutLDFIntra[x,3])))
                                                                        ^
```
[inst/unitTests/test_plottingFunctions.R:5:24:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L5) *style:* **Put spaces around all infix operators.**
```r
data("spectra", package="MetCirc")
                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:6:24:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
## use only a selection
                       ^
```
[inst/unitTests/test_plottingFunctions.R:8:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L8) *style:* **Variable and function names should not use underscores.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
^~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:8:67:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L8) *style:* **Commas should always have a space after.**
```r
spectra_tissue <- spectra_tissue[c(1:20, 29:48, 113:132, 240:259),]
                                                                  ^
```
[inst/unitTests/test_plottingFunctions.R:9:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L9) *style:* **Variable and function name style should be snake_case.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
^~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:9:53:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L9) *style:* **Put spaces around all infix operators.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:9:75:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L9) *style:* **Trailing whitespace is superfluous.**
```r
similarityMat <- compare_Spectra(spectra_tissue, fun=normalizeddotproduct)
                                                                          ^~
```
[inst/unitTests/test_plottingFunctions.R:11:56:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L11) *style:* **Put spaces around all infix operators.**
```r
inds <- MetCirc:::spectraCond(spectra_tissue, condition=condition)
                                                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:12:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L12) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:12:40:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L12) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                       ^
```
[inst/unitTests/test_plottingFunctions.R:12:41:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L12) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- lapply(inds, function(x) {inds_match <- match(groupname, x)
                                        ^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:13:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L13) *style:* **Variable and function names should not use underscores.**
```r
inds_match <- inds_match[!is.na(inds_match)]; x[inds_match]})
^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:14:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L14) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- lapply(seq_along(inds_match),
^~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:14:43:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
inds_cond <- lapply(seq_along(inds_match),
                                          ^
```
[inst/unitTests/test_plottingFunctions.R:17:53:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L17) *style:* **Put spaces around all infix operators.**
```r
            paste(condition[x], inds_match[[x]], sep="_")
                                                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:20:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L20) *style:* **Variable and function names should not use underscores.**
```r
inds_cond <- unique(unlist(inds_cond))
^~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:24:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Lines should not be more than 80 characters.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:24:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Variable and function name style should be snake_case.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
^~~~~~
```
[inst/unitTests/test_plottingFunctions.R:24:71:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Put spaces around all infix operators.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
                                                                     ~^~
```
[inst/unitTests/test_plottingFunctions.R:24:83:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L24) *style:* **Put spaces around all infix operators.**
```r
linkDf <- createLinkDf(similarityMat, spectra_tissue, condition, lower=0.95, upper=1)
                                                                                ~^~
```
[inst/unitTests/test_plottingFunctions.R:28:61:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L28) *style:* **Trailing whitespace is superfluous.**
```r
circos.par(gap.degree = 0, cell.padding = c(0.0, 0, 0.0, 0),
                                                            ^
```
[inst/unitTests/test_plottingFunctions.R:30:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L30) *style:* **Variable and function names should not use underscores.**
```r
test_plotCircos <- function() {
^~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:30:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
test_plotCircos <- function() {
^~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:31:58:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L31) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(inds_cond, NULL, initialize=TRUE,
                                                        ~^~
```
[inst/unitTests/test_plottingFunctions.R:31:64:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
    checkException(plotCircos(inds_cond, NULL, initialize=TRUE,
                                                               ^
```
[inst/unitTests/test_plottingFunctions.R:32:21:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:40:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:57:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                       ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:70:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                    ~^~
```
[inst/unitTests/test_plottingFunctions.R:32:76:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L32) *style:* **Trailing whitespace is superfluous.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                           ^
```
[inst/unitTests/test_plottingFunctions.R:33:18:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L33) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2))
                ~^~
```
[inst/unitTests/test_plottingFunctions.R:33:32:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L33) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2))
                              ~^~
```
[inst/unitTests/test_plottingFunctions.R:33:51:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L33) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2))
                                                 ~^~
```
[inst/unitTests/test_plottingFunctions.R:34:60:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L34) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(groupname, linkDf, initialize=TRUE,
                                                          ~^~
```
[inst/unitTests/test_plottingFunctions.R:34:66:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L34) *style:* **Trailing whitespace is superfluous.**
```r
    checkException(plotCircos(groupname, linkDf, initialize=TRUE,
                                                                 ^
```
[inst/unitTests/test_plottingFunctions.R:35:21:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                   ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:40:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                      ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:57:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                       ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:70:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Put spaces around all infix operators.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                    ~^~
```
[inst/unitTests/test_plottingFunctions.R:35:76:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L35) *style:* **Trailing whitespace is superfluous.**
```r
        featureNames=FALSE, groupSector=FALSE, groupName=FALSE, links=TRUE,
                                                                           ^
```
[inst/unitTests/test_plottingFunctions.R:36:18:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L36) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2)) ## names are different
                ~^~
```
[inst/unitTests/test_plottingFunctions.R:36:32:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L36) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2)) ## names are different
                              ~^~
```
[inst/unitTests/test_plottingFunctions.R:36:51:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L36) *style:* **Put spaces around all infix operators.**
```r
        highlight=FALSE, colour=NULL, transparency=0.2)) ## names are different
                                                 ~^~
```
[inst/unitTests/test_plottingFunctions.R:37:5:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L37) *warning:* **no visible global function definition for ‘checkException’**
```r
    checkException(plotCircos(featureNames=TRUE))
    ^~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:37:20:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L37) *warning:* **no visible global function definition for ‘plotCircos’**
```r
    checkException(plotCircos(featureNames=TRUE))
                   ^~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:37:43:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L37) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(featureNames=TRUE))
                                         ~^~
```
[inst/unitTests/test_plottingFunctions.R:38:65:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L38) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(inds_cond, linkDf, cexFeatureNames=0.3,
                                                               ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:1:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Lines should not be more than 80 characters.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[inst/unitTests/test_plottingFunctions.R:39:19:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                 ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:38:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                    ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:57:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                                       ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:74:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Put spaces around all infix operators.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                                                        ~^~
```
[inst/unitTests/test_plottingFunctions.R:39:81:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L39) *style:* **Trailing whitespace is superfluous.**
```r
        initialize=TRUE, featureNames=FALSE, groupSector=FALSE, groupName=FALSE,
                                                                                ^
```
[inst/unitTests/test_plottingFunctions.R:40:14:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
            ~^~
```
[inst/unitTests/test_plottingFunctions.R:40:30:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
                            ~^~
```
[inst/unitTests/test_plottingFunctions.R:40:50:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
                                                ~^~
```
[inst/unitTests/test_plottingFunctions.R:40:62:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L40) *style:* **Put spaces around all infix operators.**
```r
        links=TRUE, highlight=FALSE, transparency=0.2, colour=c("red", "blue")))
                                                            ~^~
```
[inst/unitTests/test_plottingFunctions.R:41:65:](https://github.com/tnaake/MetCirc/blob/a48b89400ed824ed027917dc346a4cbcae3f54ca/inst/unitTests/test_plottingFunctions.R#L41) *style:* **Put spaces around all infix operators.**
```r
    checkException(plotCircos(inds_cond, linkDf, cexFeatureNames=0.3,
                                                               ~^~
```


Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `script` property.
~~~


The intention was to hardwire them to 1. Presumably there isn't Sail support for turning off capabilities (we haven't specified what that would mean?). The d bit is slightly more subtle, but it seems like tracking capability changes in a merged register file would be fairly futile?


Successfully aliased the URL <https://kendraio-app-1vyl0x9kn.now.sh> to the following aliases:

* https://dev.app.kendra.io
* https://kendraio-app.kendraio.now.sh
* https://kendraio-app-git-develop.kendraio.now.sh


Now could not deploy this pull request since it contains the following references to invalid secrets in the `env` sections of the `now.json` file:

* `AIRTABLE_API_KEY` (in env: `AIRTABLE_API_KEY)`

Add those secrets or remove them from the `env` maps in the `now.json` file.


IBM Cloud [toolchain](https://cloud.ibm.com/devops/toolchains/3a099273-a87a-4686-970f-4a26c84cb070?env_id=ibm%3Ayp%3Aeu-gb "cloud-native-toolchain-tutorial-20190906110148516"): [Delivery Pipeline](https://cloud.ibm.com/devops/pipelines/01435d3c-bc8f-4894-856d-5fdce70b81d3 "sample-cloud-native-toolchain-tutorial-20190906110148516") deployed [sample-cloud-native-toolchain-tutorial-20190906110148516](https://github.com/savithavenu/sample-cloud-native-toolchain-tutorial-20190906110148516/releases/tag/deploy-ibm-yp-eu-gb-svenukri-in.ibm.com-dev-20190906-131110 "deploy-ibm-yp-eu-gb-svenukri-in.ibm.com-dev-20190906-131110") to [dev](https://console.bluemix.net/apps/1d03da83-ec41-49ee-b09c-3cc081d91bd2?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:svenukri@in.ibm.com:dev"), including this commit


Successfully aliased the URL <https://my-next-project-oqm38ub50.now.sh> to the following aliases:

* https://my-next-project.bruno-azzi.now.sh
* https://my-next-project-git-master.bruno-azzi.now.sh


![Microsoft Edge 9_6_2019 4_02_17 PM](https://user-images.githubusercontent.com/34619999/64430452-fc7f2500-d0c0-11e9-9f5b-93a3519de24f.png)

![Microsoft Edge 9_6_2019 4_03_02 PM](https://user-images.githubusercontent.com/34619999/64430454-fe48e880-d0c0-11e9-8393-59e09cbd66a9.png)


You just removed notification, but no solution provided. Why?


> If request is cancelled, the result arrays are empty

from https://developer.android.com/training/permissions/requesting


Does this actually close (the already closed) #8756? No `-D analyzer-optimize` needed anymore?


The pref is still shown as enabled, even if its saved state is `false|itemName`.


Successfully aliased the URL <https://carbon-website-n4xelx7eo.now.sh> to the following aliases:

* https://carbondesignsystem.now.sh
* https://carbon-website.carbon-design-system.now.sh
* https://carbon-website-git-master.carbon-design-system.now.sh


Does this fix the issue of the scores of all teams being 0.00 in the Friday morning score update?


can we at least fix this part?


why is that?


Successfully aliased the URL <https://airship-rescue-el9i40o2o.now.sh> to the following aliases:

* https://airship-rescue.org
* https://airship-rescue.saschametzger.now.sh
* https://airship-rescue-git-master.saschametzger.now.sh


done


It is the right URL. Thank you!


@JuliaRegistrator register


this commit should be version 1.3.1


Registration pull request updated: [JuliaRegistries/General/3197](https://github.com/JuliaRegistries/General/pull/3197)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.1.0 -m "<description of version>" 9764eda98c473ccc1ebe1efd96b50e7df713b7fd
git push origin v0.1.0
```


Dans ma boite, et en général, on est plutôt kebab-case pour nommer des ID ou classes en HTML/CSS.

Je te mets le lien d'un article qui t'explique les différentes normes de nommage et leurs utilisations : https://www.programmation-web.fr/index.php/2019/06/17/les-normes-de-nommages-en-informatique/ . C'est purement informationnel et je ne pense pas que ce soit une mauvaise pratique d'utiliser du camelCase en CSS/HTML, mais dans ma boite, on aime pas trop.

Du coup `sliderContent`, ça donnerait chez nous `slider-content`, et quand on a besoin de déclinaisons pour des classes, on garde la même base commune, exemple tiré d'un projet:
* `info-list` pour le parent ou pour chaque élement de la classe (comme `fas` avec font-awesome
* `info-list__label` ou `info-list__alert` pour désigner des éléments précis de chaque classe et bien représenter leur utilité/fonction.


Yes


[R/ods_find_higher_geographies.R:17:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L17) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_higher_geographies.R:19:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L19) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_higher_geographies.R:22:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L22) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_higher_geographies.R:25:60:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L25) *style:* **Commented code should be removed.**
```r
    ?data <http://purl.org/linked-data/sdmx/2009/dimension#refArea> ?geographyURI.
                                                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/ods_find_higher_geographies.R:33:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L33) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_higher_geographies.R:35:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L35) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_higher_geographies.R:37:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_higher_geographies.R#L37) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_lower_geographies.R:17:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L17) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_lower_geographies.R:19:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L19) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_lower_geographies.R:22:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L22) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~~~~~~~~~~~
```
[R/ods_find_lower_geographies.R:25:74:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L25) *style:* **Commented code should be removed.**
```r
                  ?data <http://purl.org/linked-data/sdmx/2009/dimension#refArea> ?geographyURI.
                                                                         ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/ods_find_lower_geographies.R:33:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L33) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_lower_geographies.R:35:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L35) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_find_lower_geographies.R:37:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_find_lower_geographies.R#L37) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_get_csv.R:30:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_get_csv.R#L30) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:21:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L21) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
ods_print_query <- function(dataset,
^
```
[R/ods_print_query.R:26:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L26) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:43:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L43) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:56:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L56) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:63:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L63) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:75:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L75) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:78:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L78) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:81:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L81) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:101:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L101) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:103:5:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L103) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(!is.null(geography)) {
    ^
```
[R/ods_print_query.R:104:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L104) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:106:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L106) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:112:58:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L112) *style:* **Only use double-quotes.**
```r
                                                   (stop('Geography code not in sc, la, hd, iz, or dz'))
                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ods_print_query.R:114:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L114) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:115:151:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L115) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    query_addition <- paste0("filter (strstarts(strafter(str(?refAreaURI),'http://statistics.gov.scot/id/statistical-geography/'),'", geo_code, "'))." )
                                                                                ^
```
[R/ods_print_query.R:116:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L116) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:119:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L119) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:123:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L123) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:129:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L129) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:131:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L131) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:134:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L134) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:142:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L142) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/ods_print_query.R:159:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L159) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:161:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L161) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/ods_print_query.R:163:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L163) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:166:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L166) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:169:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L169) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/ods_print_query.R:171:1:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/R/ods_print_query.R#L171) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[tests/testthat/test_ods_dataset.R:39:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_dataset.R#L39) *style:* **Commented code should be removed.**
```r
#  skip_on_cran()
   ^~~~~~~~~~~~~~
```
[tests/testthat/test_ods_dataset.R:40:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_dataset.R#L40) *style:* **Commented code should be removed.**
```r
#  expect_equal(ods_dataset(dataset = "average-household-size", geography = "S12000039")$refArea[1], "West Dunbartonshire")
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_dataset.R:44:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_dataset.R#L44) *style:* **Commented code should be removed.**
```r
#  skip_on_cran()
   ^~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:1:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L1) *style:* **Commented code should be removed.**
```r
#context("ods_print_query")
 ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:3:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L3) *style:* **Commented code should be removed.**
```r
#expected_return_value1 <- "PREFIX qb: <http://purl.org/linked-data/cube#>"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:4:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L4) *style:* **Commented code should be removed.**
```r
#expected_return_value2 <- "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:5:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L5) *style:* **Commented code should be removed.**
```r
#expected_return_value3 <- "PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:6:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L6) *style:* **Commented code should be removed.**
```r
#expected_return_value4 <- "select  \\?value where \\{ \\?data qb:dataSet <http://statistics\\.gov\\.scot/data/average-house-size>\\. \\?data  \\.  rdfs:label \\. \\?data  \\.  rdfs:label \\. \\?data \\?measureTypeURI \\?value\\. \\}"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:7:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L7) *style:* **Commented code should be removed.**
```r
#expected_return_value5 <- "select  \\?value where \\{ \\?data qb:dataSet <http://statistics\\.gov\\.scot/data/average-house-size>\\. \\?data  \\.  rdfs:label \\. \\?data  \\.  rdfs:label \\. FILTER \\(\\?refPeriod >= '2017'\\^\\^xsd:date && \\?refPeriod <= '2018'\\^\\^xsd:date\\) \\?data \\?measureTypeURI \\?value\\. \\}"
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:9:2:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L9) *style:* **Commented code should be removed.**
```r
#printed_query <- ods_print_query("average-house-size")
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:15:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L15) *style:* **Commented code should be removed.**
```r
#  skip_on_cran()
   ^~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:16:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L16) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query, expected_return_value1)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:17:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L17) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query, expected_return_value2)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:18:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L18) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query, expected_return_value3)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:19:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L19) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query, expected_return_value4)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:23:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L23) *style:* **Commented code should be removed.**
```r
#  skip_on_cran()
   ^~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:24:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L24) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query_with_filter, expected_return_value1)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:25:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L25) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query_with_filter, expected_return_value2)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:26:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L26) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query_with_filter, expected_return_value3)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test_ods_print_query.R:27:4:](https://github.com/DataScienceScotland/opendatascot/blob/c5c6ddab8bb426b6f054cfada7ea0e0f5c6e76cf/tests/testthat/test_ods_print_query.R#L27) *style:* **Commented code should be removed.**
```r
#  expect_match(printed_query_with_filter, expected_return_value5)
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


I'm just selfish: my 8080 port is already taken by another application I dont want to disable


Test passed!


Pareil, `txt1`, on évite ^^


this commit should be version 2.0.0
because of many people has suffered when for 1.3 version was installed version 1.4.x


My only suggestion (and it's really a query) is to ask when you have the page browser very small, so that you can no longer see the email and Github links, would it be a good idea to link the CONTACT in the navbar so it jumps down to those links?  Or move the links higher up the page when the screen is small?
Maybe ask someone with more technical knowledge to review too?


@DelazJ , commit message got messed up, unsure this new feature will have been picked up by the automated documentation issue script.


Successfully aliased the URL <https://parafuso-epcw4ebm6.now.sh> to the following aliases:

* https://parafuso.renatoelysiqueira.now.sh
* https://parafuso-git-master.renatoelysiqueira.now.sh


srsly sha is lovvu


Successfully aliased the URL <https://amp-gzjxw86yk.now.sh> to the following aliases:

* https://amp.ahoirilaila.now.sh
* https://amp-git-master.ahoirilaila.now.sh


The name of the applicant should be stored in `hs_auth` right?


✅ Device tests passed on iOS32b on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=3025272)(iOS32b): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/d16-3/08809f5bf7cfd613fdb8ecd329ea2b85317c899c/3025272/device-tests/jenkins-results/tests/index.html) ✅

# Test results

# No tests selected.


```diff
-                     <div id="boutton">
+                     <div class="btn btn__more-info">
```

C'est toujours vrai, mais ça l'est particulièrement pour les ID. Comme tu le sais, un ID c'est unique dans une page, ça veut dire que le nom que tu lui donnes doit absolument permettre de l'identifier sans trop en connaître le contexte. Ici, si c'est pas une ancre, aucun besoin de mettre l'ID, tu peux travailler avec les classes comme l'a suggéré Tof.


Thanks for spotting that. I updated the comments so that they’re valid CSS comments (and fixed the issues). After all, `calypso-color-schemes`’s output file is an independent CSS file, not SCSS.


@michalgrodzicki @tlauda  fyi - this needs merged to your GLK stable branch.


Looks great!

Thanks Bernhard,
-- Don


OK, just checking. Will add a comment in commit I'm preparing.


done


good


O.K. Thanks. I opt to not having demos or at least more than a few, because it would be much more preparation needed and the timing would be questionable.


Successfully aliased the URL <https://amp-8zgvg5szu.now.sh> to the following aliases:

* https://amp.ahoirilaila.now.sh
* https://amp-git-master.ahoirilaila.now.sh


Successfully aliased the URL <https://neotribe-5ifgvhfc6.now.sh> to the following aliases:

* https://neotribe.xyz
* https://neotribe.neosiae.now.sh


Successfully aliased the URL <https://brunoazzicom-79atdnuz4.now.sh> to the following aliases:

* https://brunoazzi.com
* https://brunoazzicom.bruno-azzi.now.sh
* https://brunoazzicom-git-master.bruno-azzi.now.sh


q


Successfully aliased the URL <https://brunoazzicom-heg63giov.now.sh> to the following aliases:

* https://brunoazzi.com
* https://brunoazzicom.bruno-azzi.now.sh
* https://brunoazzicom-git-master.bruno-azzi.now.sh


@nirvn https://github.com/qgis/QGIS-Documentation/issues/4220


Actually, testing it out, these both work in their current form anyway:

```lua
require("cp.apple.finalcutpro"):launch(); require("cp.apple.finalcutpro"):doSelectMenu({"Edit", "Undo"}):Now()
require("cp.apple.finalcutpro"):launch(); require("cp.apple.finalcutpro"):doSelectMenu({"Edit", "Undo.*"}):Now()
```


upolad