[R/create_test_simulation_output.R:14:20:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/create_test_simulation_output.R#L14) *warning:* **no visible global function definition for ‘is_island_ontogeny_input’**
```r
    testit::assert(is_island_ontogeny_input(island_ontogeny))
                   ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:16:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_area_params.R#L16) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
are_area_params <- function(area_params) {
^
```
[R/DAISIE_check_format.R:6:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L6) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
are_rates <- function(x) {
^
```
[R/DAISIE_check_format.R:79:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L79) *style:* **Commented code should be removed.**
```r
    # if (!"branching_times" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:80:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L80) *style:* **Commented code should be removed.**
```r
    # if (!"stac" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:81:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L81) *style:* **Commented code should be removed.**
```r
    # if (!"missing_species" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:95:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L95) *style:* **functions should have cyclomatic complexity of less than 15, this has 84.**
```r
are_DAISIE_create_sim_params <- function(params) {
^
```
[R/DAISIE_check_format.R:95:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L95) *style:* **Variable and function name style should be snake_case.**
```r
are_DAISIE_create_sim_params <- function(params) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:142:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_check_format.R#L142) *style:* **Commented code should be removed.**
```r
  #testit::assert(params$stored_data) #Pedro to write test
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:18:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_create_island.R#L18) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_sim_params.R:30:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_create_sim_params.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_sim_params <- function(time = 10,
^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_sim_params.R:31:31:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_create_sim_params.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
                              M = 1000,
                              ^
```
[R/DAISIE_create_sim_params.R:44:31:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_create_sim_params.R#L44) *style:* **Variable and function name style should be snake_case.**
```r
                              Apars = NULL,
                              ^~~~~
```
[R/DAISIE_create_sim_params.R:45:31:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_create_sim_params.R#L45) *style:* **Variable and function name style should be snake_case.**
```r
                              Epars = NULL,
                              ^~~~~
```
[R/DAISIE_data.R:8:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:48:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:53:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L53) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:93:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:97:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L97) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:105:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L105) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L125) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:128:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:159:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:162:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L162) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:198:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L198) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:248:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L248) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:257:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:271:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L271) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:287:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L287) *style:* **Lines should not be more than 80 characters.**
```r
#' format, accepted by DAISIE_ML, DAISIE_SR_ML, DAISIE_loglik_all and DAISIE_SR_loglik_all
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:322:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_data.R#L322) *style:* **Lines should not be more than 80 characters.**
```r
#' @seealso \code{\link{DAISIE_dataprep}}, \code{\link{DAISIE_ML}}, \code{\link{DAISIE_SR_ML}}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L91) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:101:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L101) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L116) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L118) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L131) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
DAISIE_dataprep <- function(datatable,
^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L131) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_dataprep <- function(datatable,
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:133:28:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
                           M,
                           ^
```
[R/DAISIE_dataprep.R:141:13:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L141) *style:* **Variable and function name style should be snake_case.**
```r
  datatable$Missing_species <- as.numeric(as.character
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:40:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L152) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      not_present_type1 <- DDD::roundn( (M / number_colonisations) *
                                       ^
```
[R/DAISIE_dataprep.R:155:40:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L155) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      not_present_type2 <- DDD::roundn( (M / number_colonisations) *
                                       ^
```
[R/DAISIE_dataprep.R:168:13:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L168) *warning:* **Avoid 1:nrow(...) expressions, use seq_len.**
```r
  for (i in 1:nrow(datatable)) {
            ^
```
[R/DAISIE_dataprep.R:198:37:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_dataprep.R#L198) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
      if (max(the_brts) > island_age){
                                    ^~
```
[R/DAISIE_ExpEIN.R:2:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:6:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:7:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:27:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:28:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Compute the expected values at t = 4, for a mainland pool size of 1000 potential
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:29:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
#' # colonists and a vector of 5 parameters (cladogenesis, extinction, clade-level carrying
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:31:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_ExpEIN.R:37:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:39:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
^~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:39:36:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
                                   ^
```
[R/DAISIE_ExpEIN.R:39:39:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
                                      ^~~~~~
```
[R/DAISIE_ExpEIN.R:46:8:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L46) *style:* **Variable and function name style should be snake_case.**
```r
       M2 <- M - DDD::roundn(pars1[11] * M)
       ^~
```
[R/DAISIE_ExpEIN.R:48:8:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L48) *style:* **Variable and function name style should be snake_case.**
```r
       M2 <- M
       ^~
```
[R/DAISIE_ExpEIN.R:50:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
   A <- mu - lac
   ^
```
[R/DAISIE_ExpEIN.R:51:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L51) *style:* **Variable and function name style should be snake_case.**
```r
   B <- lac + mu + ga + laa
   ^
```
[R/DAISIE_ExpEIN.R:52:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L52) *style:* **Variable and function name style should be snake_case.**
```r
   C <- laa + 2 * lac + ga
   ^
```
[R/DAISIE_ExpEIN.R:53:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L53) *style:* **Variable and function name style should be snake_case.**
```r
   DD <- laa + 2 * lac
   ^~
```
[R/DAISIE_ExpEIN.R:54:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L54) *style:* **Variable and function name style should be snake_case.**
```r
   E0 <- initEI[1]
   ^~
```
[R/DAISIE_ExpEIN.R:55:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
   I0 <- initEI[2]
   ^~
```
[R/DAISIE_ExpEIN.R:57:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L57) *style:* **Variable and function name style should be snake_case.**
```r
      Imm <- ga * M2 / B
      ^~~
```
[R/DAISIE_ExpEIN.R:58:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
      End <- DD / A * Imm
      ^~~
```
[R/DAISIE_ExpEIN.R:60:8:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L60) *style:* **Commented code should be removed.**
```r
      #Imm = M2 * ga / B * (1 - exp(-B * t))
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:63:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L63) *style:* **Variable and function name style should be snake_case.**
```r
      Imm <- M2 * ga / B - (M2 * ga / B - I0) * exp(-B * t)
      ^~~
```
[R/DAISIE_ExpEIN.R:64:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
      End <- DD / C * (M2 * ga / A - M2 * ga / B +
      ^~~
```
[R/DAISIE_ExpEIN.R:68:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L68) *style:* **Variable and function name style should be snake_case.**
```r
   All <- End + Imm
   ^~~
```
[R/DAISIE_ExpEIN.R:69:4:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_ExpEIN.R#L69) *style:* **Variable and function name style should be snake_case.**
```r
   expEIN <- list(End, Imm, All)
   ^~~~~~
```
[R/DAISIE_extract_stt_median.R:5:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_extract_stt_median.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_extract_stt_median <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_extract_stt_median.R:5:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_extract_stt_median.R#L5) *warning:* **local variable ‘time’ assigned but may not be used**
```r
  time <- max(island_replicates[[1]][[1]]$stt_all[, 1])
  ^~~~
```
[R/DAISIE_format_CS_full_stt.R:13:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
DAISIE_format_CS_full_stt <- function(island_replicates,
^
```
[R/DAISIE_format_CS_full_stt.R:13:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_CS_full_stt <- function(island_replicates,
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:15:39:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                                      M,
                                      ^
```
[R/DAISIE_format_CS_full_stt.R:199:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L199) *style:* **Commented code should be removed.**
```r
# pars_equas <- c(2.550687345, 2.683454548, Inf, 0.00933207, 1.010073119)
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:204:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L204) *style:* **Commented code should be removed.**
```r
#   replicates = 2
    ^~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:206:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L206) *style:* **Commented code should be removed.**
```r
# stt_list <- island_replicates_equal[[1:1000]]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:207:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L207) *style:* **Commented code should be removed.**
```r
# unlist(stt_list[1])
  ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:208:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L208) *style:* **Commented code should be removed.**
```r
# which(stt_list)
  ^~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:210:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L210) *style:* **Commented code should be removed.**
```r
# small_stts <- lapply(stt_list, nrow) == 2
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:211:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L211) *style:* **Commented code should be removed.**
```r
# second_line_stts <- lapply(stt_list, "[", 2,)
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:212:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L212) *style:* **Commented code should be removed.**
```r
# zeros_second_line <- sapply(second_line_stts, sum) == 0
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:214:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L214) *style:* **Commented code should be removed.**
```r
# comparisson <- zeros_second_line == small_stts
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:215:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L215) *style:* **Commented code should be removed.**
```r
# testit::assert(all(comparisson))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:217:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L217) *style:* **Commented code should be removed.**
```r
# filled_stt_lists <- stt_list[!zeros_second_line]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:219:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L219) *style:* **Commented code should be removed.**
```r
# filled_stt_lists[[1]][, 1]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:220:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L220) *style:* **Commented code should be removed.**
```r
# filled_stt_lists[[1]][, 1]
  ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:221:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L221) *style:* **Commented code should be removed.**
```r
# times <- sapply(filled_stt_lists, "[", ,1)
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:223:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L223) *style:* **Commented code should be removed.**
```r
# times_without_last <- lapply(times, head, -1)
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:224:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L224) *style:* **Commented code should be removed.**
```r
# times_without_last_first <- sapply(times_without_last, "[", -1)
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:226:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS_full_stt.R#L226) *style:* **Commented code should be removed.**
```r
# sort(unlist(times_without_last_first))
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS.R:15:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS.R#L15) *style:* **functions should have cyclomatic complexity of less than 15, this has 40.**
```r
DAISIE_format_CS <- function(island_replicates,
^
```
[R/DAISIE_format_CS.R:15:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_CS <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS.R:17:29:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_CS.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
                            M,
                            ^
```
[R/DAISIE_format_GW.R:17:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L17) *style:* **functions should have cyclomatic complexity of less than 15, this has 39.**
```r
DAISIE_format_GW <- function(island_replicates,
^
```
[R/DAISIE_format_GW.R:17:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_GW <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:19:29:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
                            M,
                            ^
```
[R/DAISIE_format_GW.R:27:15:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L27) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for (rep in 1:length(island_replicates)) {
              ^
```
[R/DAISIE_format_GW.R:31:15:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L31) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(full_list)) {
              ^
```
[R/DAISIE_format_GW.R:35:19:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L35) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for (j in 1:length(full_list[[i]]$taxon_list)) {
                  ^
```
[R/DAISIE_format_GW.R:48:15:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L48) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(full_list)) {
              ^
```
[R/DAISIE_format_GW.R:54:19:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L54) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for (j in 1:length(full_list[[i]]$taxon_list)) {
                  ^
```
[R/DAISIE_format_GW.R:55:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
          init_nonend_spec_list[[i]] <- full_list[[i]]$taxon_list[[1]]$init_nonend_spec
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:56:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
          init_end_spec_list[[i]] <- full_list[[i]]$taxon_list[[1]]$init_end_spec
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:57:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L57) *style:* **Lines should not be more than 80 characters.**
```r
          carrying_capacity_list[[i]] <- full_list[[i]]$taxon_list[[1]]$carrying_capacity
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:71:14:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L71) *style:* **Commas should always have a space after.**
```r
    stt_all[,"Time"] <- rev(seq(from = 0,
             ^
```
[R/DAISIE_format_GW.R:76:11:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L76) *warning:* **local variable ‘row_index’ assigned but may not be used**
```r
          row_index <- max(which(stt_list[[x]][, "Time"] >= the_age))
          ^~~~~~~~~
```
[R/DAISIE_format_GW.R:93:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
          store_richness_time_slice[x, ] <- stt_list[[x]][max(which(stt_list[[x]][, "Time"] >= the_age)), 2:4]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:113:25:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L113) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
              for (j in 1:length(full_list[[i]]$taxon_list)) {
                        ^
```
[R/DAISIE_format_GW.R:114:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L114) *style:* **Lines should not be more than 80 characters.**
```r
                taxon_sublist_name <- paste0("taxon_sublist_", c(1:length(full_list[[i]]$taxon_list)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:114:66:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L114) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
                taxon_sublist_name <- paste0("taxon_sublist_", c(1:length(full_list[[i]]$taxon_list)))
                                                                 ^
```
[R/DAISIE_format_GW.R:116:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L116) *style:* **Lines should not be more than 80 characters.**
```r
                island_list <- append(island_list, list(get(taxon_sublist_name[[j]])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:128:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
                                 not_present = M, #check what not_present should be
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:136:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_GW.R#L136) *style:* **Lines should not be more than 80 characters.**
```r
                                 all_carrying_capacities = carrying_capacity_vec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:30:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_IW <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:32:30:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L32) *style:* **Variable and function name style should be snake_case.**
```r
                             M,
                             ^
```
[R/DAISIE_format_IW.R:38:15:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L38) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for (rep in 1:length(island_replicates)) {
              ^
```
[R/DAISIE_format_IW.R:46:17:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L46) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(the_island$taxon_list)) {
                ^
```
[R/DAISIE_format_IW.R:88:17:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L88) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (y in 1:length(the_island$taxon_list)) {
                ^
```
[R/DAISIE_format_IW.R:108:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L108) *style:* **Variable and function name style should be snake_case.**
```r
Add_brt_table <- function(island) {
^~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:119:15:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L119) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(island)) {
              ^
```
[R/DAISIE_format_IW.R:141:17:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L141) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(island_no_stac1or5)) {
                ^
```
[R/DAISIE_format_IW.R:145:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L145) *style:* **Variable and function name style should be snake_case.**
```r
      brts_IWK <- matrix(ncol = 4, nrow = length(brts))
      ^~~~~~~~
```
[R/DAISIE_format_IW.R:147:17:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L147) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(btimes)) {
                ^
```
[R/DAISIE_format_IW.R:163:17:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_format_IW.R#L163) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(stac1_5s)) {
                ^
```
[R/DAISIE_get_brts_mya.R:12:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_get_brts_mya.R#L12) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_get_brts_mya <- function(data_table) {
^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_IC.R:61:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_IC.R#L61) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_IC <- function(datalist,
^~~~~~~~~
```
[R/DAISIE_IC.R:70:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_IC.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
  MLE_obs <- DAISIE_ML(
  ^~~~~~~
```
[R/DAISIE_IC.R:97:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_IC.R#L97) *style:* **Variable and function name style should be snake_case.**
```r
  MLE <- rep(0, endmc)
  ^~~
```
[R/DAISIE_IC.R:98:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_IC.R#L98) *style:* **Variable and function name style should be snake_case.**
```r
  LL <- rep(0, endmc)
  ^~
```
[R/DAISIE_IC.R:125:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_IC.R#L125) *style:* **Variable and function name style should be snake_case.**
```r
  WIC <- -2 * MLE_obs$loglik - 2 * mean(LL - MLE)
  ^~~
```
[R/DAISIE_IC.R:126:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_IC.R#L126) *style:* **Variable and function name style should be snake_case.**
```r
  AICb <- -2 * MLE_obs$loglik - 4 * mean(LL - MLE_obs)
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:6:79:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#'   \item{[2]: value from 0 to 1 indicating where in the island's history the
                                                                              ^
```
[R/DAISIE_loglik_CS_time.R:9:14:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L9) *warning:* **no visible global function definition for ‘create_area_params’**
```r
    Apars <- create_area_params(Apars[1], Apars[2], Apars[3], Apars[4])
             ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:11:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_ontogeny a string describing the type of island ontogeny. Can be \code{NULL},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:11:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L11) *warning:* **local variable ‘gam0’ assigned but may not be used**
```r
  gam0 <- parsvec[9]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:12:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L12) *warning:* **local variable ‘laa0’ assigned but may not be used**
```r
  laa0 <- parsvec[10]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:13:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L13) *warning:* **local variable ‘Epars’ assigned but may not be used**
```r
  Epars <- pars1[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:15:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L15) *warning:* **local variable ‘ddep’ assigned but may not be used**
```r
  ddep <- parsvec[13]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L16) *warning:* **local variable ‘ddep’ assigned but may not be used**
```r
  ddep <- parsvec[13]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L16) *warning:* **local variable ‘laa0’ assigned but may not be used**
```r
  laa0 <- pars1[10]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:78:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L16) *style:* **Trailing whitespace is superfluous.**
```r
#' @references Valente, Luis M., Rampal S. Etienne, and Albert B. Phillimore.
                                                                             ^
```
[R/DAISIE_loglik_CS_time.R:17:72:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#' "The effects of island ontogeny on species diversity and phylogeny."
                                                                       ^
```
[R/DAISIE_loglik_CS_time.R:18:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
#' Proceedings of the Royal Society of London B: Biological Sciences 281.1784 (2014): 20133227.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:19:41:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
island_area_vector <- function(timeval, Apars, island_ontogeny) {
                                        ^~~~~
```
[R/DAISIE_loglik_CS_time.R:27:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L27) *style:* **Variable and function name style should be snake_case.**
```r
    Apars <- create_area_params(Apars[1], Apars[2], Apars[3], Apars[4])
    ^~~~~
```
[R/DAISIE_loglik_CS_time.R:39:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L39) *style:* **Commented code should be removed.**
```r
#parsvec[1:4] = Apars
 ^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:40:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L40) *style:* **Commented code should be removed.**
```r
#parsvec[5] = lac0
 ^~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:41:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L41) *style:* **Commented code should be removed.**
```r
#parsvec[6:7] = mupars
 ^~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:42:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L42) *style:* **Commented code should be removed.**
```r
#parsvec[8] = K0
 ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:43:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L43) *style:* **Commented code should be removed.**
```r
#parsvec[9] = gam0
 ^~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:44:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L44) *style:* **Commented code should be removed.**
```r
#parsvec[10] = laa0
 ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:45:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L45) *style:* **Commented code should be removed.**
```r
#parsvec[11] = island_ontogeny
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:46:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L46) *style:* **Commented code should be removed.**
```r
#parsvec[12] = kk
 ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:47:2:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L47) *style:* **Commented code should be removed.**
```r
#parsvec[13] = ddep
 ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:49:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_time <- function(t, x, parsvec) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:55:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  Apars <- parsvec[1:4]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:57:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L57) *style:* **Variable and function name style should be snake_case.**
```r
  Epars <- parsvec[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:58:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- parsvec[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:110:40:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L110) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    muvec[il2] * nn[in2] * xx1[ix2] + -(muvec[il3] + lacvec[il3]) *
                                       ^
```
[R/DAISIE_loglik_CS_time.R:116:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L116) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3 + 1] + lacvec[il3 + 1]) * nn[in3 + 1] * xx2[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:118:11:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L118) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  dx3 <- -(laavec[il3[1]] + lacvec[il3[1]] + gamvec[il3[1]] +
          ^
```
[R/DAISIE_loglik_CS_time.R:123:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L123) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_time2 <- function(t, x, parsvec) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:130:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
  Apars <- parsvec[1:4]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:132:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L132) *style:* **Variable and function name style should be snake_case.**
```r
  Epars <- parsvec[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:133:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- parsvec[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:200:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L200) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3] + lacvec[il3]) * nn[in3] * xx1[ix3] - gamvec[il3] * xx1[ix3]
     ^
```
[R/DAISIE_loglik_CS_time.R:202:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L202) *style:* **Lines should not be more than 80 characters.**
```r
  # immigration when there are n+k species: Q^k,n -> Q^M,k_n; n+k species present
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:210:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L210) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3 + 1] + lacvec[il3 + 1]) * nn[in3 + 1] * xx2[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:212:20:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L212) *style:* **Trailing whitespace is superfluous.**
```r
  # only when k = 1
                   ^~~~~~~
```
[R/DAISIE_loglik_CS_time.R:214:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L214) *style:* **Lines should not be more than 80 characters.**
```r
  # cladogenesis in one of the n-1 species: Q_M,n-1 -> Q_M,n; n+k-1 species present; rate once
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:215:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L215) *style:* **Lines should not be more than 80 characters.**
```r
  # extinction in one of the n+1 species: Q_M,n+1 -> Q_M,n; n+k+1 species present
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:219:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L219) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(lacvec[il3] + muvec[il3]) * nn[in3] * xx3[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:220:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L220) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(laavec[il3] + gamvec[il3]) * xx3[ix3]
     ^
```
[R/DAISIE_loglik_CS_time.R:225:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L225) *style:* **Commented code should be removed.**
```r
  # pars1[1:4] = Apars
    ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:226:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L226) *style:* **Commented code should be removed.**
```r
  # pars1[5] = lac0
    ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:227:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L227) *style:* **Commented code should be removed.**
```r
  # pars1[6:7] = mupars
    ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:228:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L228) *style:* **Commented code should be removed.**
```r
  # pars1[8] = K0
    ^~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:229:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L229) *style:* **Commented code should be removed.**
```r
  # pars1[9] = gam0
    ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:230:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L230) *style:* **Commented code should be removed.**
```r
  # pars1[10] = laa0
    ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:231:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L231) *style:* **Commented code should be removed.**
```r
  # pars1[11] = island_ontogeny
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:232:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L232) *style:* **Commented code should be removed.**
```r
  # pars1[12] = t
    ^~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:234:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L234) *style:* **Variable and function name style should be snake_case.**
```r
  Apars <- pars1[1:4]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:236:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L236) *style:* **Variable and function name style should be snake_case.**
```r
  Epars <- pars1[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:237:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L237) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- pars1[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:249:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L249) *style:* **Variable and function name style should be snake_case.**
```r
  lacA <- lac0
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:250:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L250) *style:* **Variable and function name style should be snake_case.**
```r
  gamA <- gam0
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:251:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L251) *style:* **Variable and function name style should be snake_case.**
```r
  KA <- area * K0
  ^~
```
[R/DAISIE_loglik_CS_time.R:253:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L253) *style:* **Variable and function name style should be snake_case.**
```r
  K <- KA
  ^
```
[R/DAISIE_loglik_CS_time.R:254:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L254) *style:* **Variable and function name style should be snake_case.**
```r
  lacgamK <- c(lacgam, K)
  ^~~~~~~
```
[R/DAISIE_loglik_CS_time.R:258:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS_time.R#L258) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_integrate_time <- function(initprobs,
^~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:1:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L1) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_precomp <- function(pars,lx)
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:1:44:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L1) *style:* **Commas should always have a space after.**
```r
DAISIE_loglik_rhs_precomp <- function(pars,lx)
                                           ^
```
[R/DAISIE_loglik_CS.R:2:1:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L2) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_loglik_CS.R:3:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L3) *style:* **Use <-, not =, for assignment.**
```r
  lac = pars[1]
      ^
```
[R/DAISIE_loglik_CS.R:4:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L4) *style:* **Use <-, not =, for assignment.**
```r
  mu = pars[2]
     ^
```
[R/DAISIE_loglik_CS.R:5:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
  K = pars[3]
  ^
```
[R/DAISIE_loglik_CS.R:5:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L5) *style:* **Use <-, not =, for assignment.**
```r
  K = pars[3]
    ^
```
[R/DAISIE_loglik_CS.R:6:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L6) *style:* **Use <-, not =, for assignment.**
```r
  gam = pars[4]
      ^
```
[R/DAISIE_loglik_CS.R:7:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L7) *style:* **Use <-, not =, for assignment.**
```r
  laa = pars[5]
      ^
```
[R/DAISIE_loglik_CS.R:8:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L8) *style:* **Use <-, not =, for assignment.**
```r
  kk = pars[6]
     ^
```
[R/DAISIE_loglik_CS.R:8:16:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L8) *warning:* **no visible global function definition for ‘divdepvec_time’**
```r
    lacgamK <- divdepvec_time(lacgam, pars1, lx, k1, ddep, island_ontogeny)
               ^~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:9:8:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L9) *style:* **Use <-, not =, for assignment.**
```r
  ddep = pars[7]
       ^
```
[R/DAISIE_loglik_CS.R:11:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L11) *style:* **Use <-, not =, for assignment.**
```r
  nn = -2:(lx+2*kk+1)
     ^
```
[R/DAISIE_loglik_CS.R:11:14:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
            ~^~
```
[R/DAISIE_loglik_CS.R:11:16:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
              ~^~
```
[R/DAISIE_loglik_CS.R:11:19:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
                 ~^~
```
[R/DAISIE_loglik_CS.R:12:7:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L12) *style:* **Use <-, not =, for assignment.**
```r
  lnn = length(nn)
      ^
```
[R/DAISIE_loglik_CS.R:13:6:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L13) *style:* **Use <-, not =, for assignment.**
```r
  nn = pmax(rep(0,lnn),nn)
     ^
```
[R/DAISIE_loglik_CS.R:13:19:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L13) *style:* **Commas should always have a space after.**
```r
  nn = pmax(rep(0,lnn),nn)
                  ^
```
[R/DAISIE_loglik_CS.R:13:24:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L13) *style:* **Commas should always have a space after.**
```r
  nn = pmax(rep(0,lnn),nn)
                       ^
```
[R/DAISIE_loglik_CS.R:15:5:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L15) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(ddep == 0)
    ^
```
[R/DAISIE_loglik_CS.R:16:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L16) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:17:12:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L17) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:17:26:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L17) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:18:12:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L18) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = lac * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:18:26:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L18) *style:* **Commas should always have a space after.**
```r
    lacvec = lac * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:19:11:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L19) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:19:24:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L19) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:20:12:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L20) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:20:26:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L20) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:21:12:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L21) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 1)
           ^
```
[R/DAISIE_loglik_CS.R:22:3:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L22) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:23:12:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L23) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:23:26:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L23) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:24:12:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L24) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:24:25:](https://github.com/rsetienne/DAISIE/blob/e1c0ecc7c207562b24a41ad9b6a223a22a27df15/R/DAISIE_loglik_CS.R#L24) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                        ^
```


What error exactly?
What is the content of `self.target_keys` exactly?
Why is `fin['targets/size']` empty? If `self.target_keys` is not empty, `fin['targets/size']` should also not be empty. Maybe the dump script does sth strange there, or I forget about sth.


Более универсальным решением в данном случае будет определить
operator T() (оператор приведения к типу T)


Java


kjkjk


Successfully deployed to following URLs:

* https://iwoka-task-kgnzu98s7.now.sh
* https://iwoka-task-kappa-ruddy.now.sh
* https://iwoka-task.a133xz.now.sh
* https://iwoka-task-git-master.a133xz.now.sh


Successfully deployed to following URLs:

* https://pinjollist-9nfbr2qod.now.sh
* https://pinjollist.now.sh
* https://pinjollist.pinjollist1.now.sh
* https://pinjollist-git-master.pinjollist1.now.sh


robił je damian


Not sure I understand, but to me it looks like it should be GetSHA256() here instead of GetHash().


For a second there, I didn't see this was `PiFracDyn` and was horrified. Much relief when I saw my error.


I usually avoid the arrow notation for `it` and `beforeEach` because it prevents you from using like `this.timeout(120)` inside it.


* Better first check that there is an event, no?
* Better pick the named argument for clarity.


The pirce_src for MMI calculation should be close[0]-close[1], I corrected it and tried it on tradingview but looks like the result is still different compare to the picture jcl shared in his comments section.
https://financial-hacker.com/the-market-meanness-index/.
I don't know what else is wrong in the code.


Is `toWei("0.1", "ether")` not a string already`?


below part are so similar to  linux-intel-rt_4.19.bb ,
what if we replace these with
`require recipes-kernel/linux/linux-intel-rt_4.19.bb`


`txObj`.


> almost the same speed. If you use `with open` it automatically closes the file for you

yez i am aware
just thought it might be slower


![](https://github.trello.services/images/mini-trello-icon.png) [Mark OPATs as such in the token lists](https://trello.com/c/sEXIYUxm/198-mark-opats-as-such-in-the-token-lists)


So is the explanation for 'bad' essentially the same as what the type of `trace` eventually tells us: if we try to trace out something that is not 'constant', things go wrong?


Successfully deployed to following URLs:

* https://react-dashboard-mqtt-qaqul9jrl.now.sh
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* https://react-dashboard-mqtt-git-master.maujavier91.now.sh


![](https://github.trello.services/images/mini-trello-icon.png) [Move Messages from Home to standalone site](https://trello.com/c/KVvj2RPX/188-move-messages-from-home-to-standalone-site)


やったこと

2つ

https://www.npmjs.com/package/@types/react-tabs
上記のURLにて、厳格な型を指定したreact-tabsのライブラリをインストールすることで、
react-tabsのモジュールが認知させた。

tabの挙動がおかしく、以下のコードを消すことで、挙動が正確になったので、メソッドのhandleSelecも合わせてt消した。
`onSelect={this.handleSelect}
        selectedIndex={2}`


edit


Опять же можно заменить указатель на ссылку


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1786-topperstation.pantheonsite.io/)

Created multidev environment [ci-1786](https://dashboard.pantheon.io/sites/db5fb5e4-3225-46f0-b0a9-1cc803600c48#ci-1786) for topperstation.


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1789-topperstation.pantheonsite.io/)

Created multidev environment [ci-1789](https://dashboard.pantheon.io/sites/db5fb5e4-3225-46f0-b0a9-1cc803600c48#ci-1789) for topperstation.


Successfully deployed to following URLs:

* https://input-inspector-1foc0yn1c.now.sh
* https://input-inspector.now.sh
* https://input-inspector.javan.now.sh
* https://input-inspector-git-master.javan.now.sh


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://ci-1790-topperstation.pantheonsite.io/)

Created multidev environment [ci-1790](https://dashboard.pantheon.io/sites/db5fb5e4-3225-46f0-b0a9-1cc803600c48#ci-1790) for topperstation.


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @ferdonline, @tdegeus were added to conda-forge. Welcome to conda-forge!
  Go to https://github.com/orgs/conda-forge/invitation see your invitation.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


Transformer


Yes, I did spell it like a real swede.


为什么我在code blocks 上运行不了 11一元多项式， 10合并扩展链表


lol, fix this


![](https://github.trello.services/images/mini-trello-icon.png) [add UI controls for sound](https://trello.com/c/n3fLwY5Z/50-add-ui-controls-for-sound)


![](https://github.trello.services/images/mini-trello-icon.png) [Tie up all system UI in-game element with common interface](https://trello.com/c/8ygyOjzn/57-tie-up-all-system-ui-in-game-element-with-common-interface)


![](https://github.trello.services/images/mini-trello-icon.png) [get rid of magic numbers](https://trello.com/c/Y3YNdhRl/42-get-rid-of-magic-numbers)


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Nice!


![](https://github.trello.services/images/mini-trello-icon.png) [get rid of super dumb dependencies in QuestPickupEvent -> QuestDeleteFromInventoryEvent](https://trello.com/c/Y7FyRxIK/54-get-rid-of-super-dumb-dependencies-in-questpickupevent-questdeletefrominventoryevent)


zzj很牛逼


Общепринятая сигнатура данного оператора:
`T& operator++();`
Вам нужно вернуть ссылку на ваш объект (сделать `return *this;`) после инкремента.


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Taskcluster-GitHub attempted to create a task for this event with the following scopes:

```
[
  "assume:repo:github.com/mozilla/code-coverage:pull-request",
  "queue:route:statuses",
  "queue:scheduler-id:taskcluster-github"
]
```

The expansion of these scopes is not sufficient to create the task, leading to the following:

Client ID static/taskcluster/github does not have sufficient scopes and is missing the following scopes:

```
{
  "AnyOf": [
    {
      "AnyOf": [
        "queue:create-task:highest:aws-provisioner-v1/github-worker",
        "queue:create-task:very-high:aws-provisioner-v1/github-worker",
        "queue:create-task:high:aws-provisioner-v1/github-worker",
        "queue:create-task:medium:aws-provisioner-v1/github-worker",
        "queue:create-task:low:aws-provisioner-v1/github-worker",
        "queue:create-task:very-low:aws-provisioner-v1/github-worker",
        "queue:create-task:lowest:aws-provisioner-v1/github-worker"
      ]
    },
    {
      "AnyOf": [
        "queue:create-task:aws-provisioner-v1/github-worker",
        {
          "AllOf": [
            "queue:define-task:aws-provisioner-v1/github-worker",
            "queue:task-group-id:taskcluster-github/OmDWerncQo-fuanCEitEDw",
            "queue:schedule-task:taskcluster-github/OmDWerncQo-fuanCEitEDw/HCclFQuFSjmRaXdcGBAa9A"
          ]
        }
      ]
    }
  ]
}
```

This request requires the client to satisfy the following scope expression:

```
{
  "AllOf": [
    "queue:route:statuses",
    {
      "AnyOf": [
        {
          "AllOf": [
            "queue:scheduler-id:taskcluster-github",
            {
              "AnyOf": [
                "queue:create-task:highest:aws-provisioner-v1/github-worker",
                "queue:create-task:very-high:aws-provisioner-v1/github-worker",
                "queue:create-task:high:aws-provisioner-v1/github-worker",
                "queue:create-task:medium:aws-provisioner-v1/github-worker",
                "queue:create-task:low:aws-provisioner-v1/github-worker",
                "queue:create-task:very-low:aws-provisioner-v1/github-worker",
                "queue:create-task:lowest:aws-provisioner-v1/github-worker"
              ]
            }
          ]
        },
        {
          "AnyOf": [
            "queue:create-task:aws-provisioner-v1/github-worker",
            {
              "AllOf": [
                "queue:define-task:aws-provisioner-v1/github-worker",
                "queue:task-group-id:taskcluster-github/OmDWerncQo-fuanCEitEDw",
                "queue:schedule-task:taskcluster-github/OmDWerncQo-fuanCEitEDw/HCclFQuFSjmRaXdcGBAa9A"
              ]
            }
          ]
        }
      ]
    }
  ]
}
```

---

* method:     createTask
* errorCode:  InsufficientScopes
* statusCode: 403
* time:       2019-11-07T13:26:40.231Z

</details>


Successfully deployed to following URLs:

* https://personal-app-jzoyhnkvv.now.sh
* https://app.ragnor.co
* https://personal-app.ragnorcomerford.now.sh
* https://personal-app-git-master.ragnorcomerford.now.sh


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Taskcluster-GitHub attempted to create a task for this event with the following scopes:

```
[
  "assume:repo:github.com/mozilla/code-review:pull-request",
  "queue:route:statuses",
  "queue:scheduler-id:taskcluster-github"
]
```

The expansion of these scopes is not sufficient to create the task, leading to the following:

Client ID static/taskcluster/github does not have sufficient scopes and is missing the following scopes:

```
{
  "AnyOf": [
    {
      "AnyOf": [
        "queue:create-task:highest:aws-provisioner-v1/github-worker",
        "queue:create-task:very-high:aws-provisioner-v1/github-worker",
        "queue:create-task:high:aws-provisioner-v1/github-worker",
        "queue:create-task:medium:aws-provisioner-v1/github-worker",
        "queue:create-task:low:aws-provisioner-v1/github-worker",
        "queue:create-task:very-low:aws-provisioner-v1/github-worker",
        "queue:create-task:lowest:aws-provisioner-v1/github-worker"
      ]
    },
    {
      "AnyOf": [
        "queue:create-task:aws-provisioner-v1/github-worker",
        {
          "AllOf": [
            "queue:define-task:aws-provisioner-v1/github-worker",
            "queue:task-group-id:taskcluster-github/CBvInUXYSfG7WT1Jd-P0uA",
            "queue:schedule-task:taskcluster-github/CBvInUXYSfG7WT1Jd-P0uA/MD99SjGlRNmO0T6l0PlLxA"
          ]
        }
      ]
    }
  ]
}
```

This request requires the client to satisfy the following scope expression:

```
{
  "AllOf": [
    "queue:route:statuses",
    {
      "AnyOf": [
        {
          "AllOf": [
            "queue:scheduler-id:taskcluster-github",
            {
              "AnyOf": [
                "queue:create-task:highest:aws-provisioner-v1/github-worker",
                "queue:create-task:very-high:aws-provisioner-v1/github-worker",
                "queue:create-task:high:aws-provisioner-v1/github-worker",
                "queue:create-task:medium:aws-provisioner-v1/github-worker",
                "queue:create-task:low:aws-provisioner-v1/github-worker",
                "queue:create-task:very-low:aws-provisioner-v1/github-worker",
                "queue:create-task:lowest:aws-provisioner-v1/github-worker"
              ]
            }
          ]
        },
        {
          "AnyOf": [
            "queue:create-task:aws-provisioner-v1/github-worker",
            {
              "AllOf": [
                "queue:define-task:aws-provisioner-v1/github-worker",
                "queue:task-group-id:taskcluster-github/CBvInUXYSfG7WT1Jd-P0uA",
                "queue:schedule-task:taskcluster-github/CBvInUXYSfG7WT1Jd-P0uA/MD99SjGlRNmO0T6l0PlLxA"
              ]
            }
          ]
        }
      ]
    }
  ]
}
```

---

* method:     createTask
* errorCode:  InsufficientScopes
* statusCode: 403
* time:       2019-11-07T13:28:01.798Z

</details>


@Robinlovelace The above lines will appear in bright yellow if you simply `make` the `.html` - can you please provide a bit more detail there? And as said, ideally it would be nice to have an actual download link in [your script](https://github.com/ATFutures/who3/blob/master/code/read-nts.R) instead of a local file. And please also a description of what the table is that you're scraping there.


Могу заметить, что реализация итерации по предложенному мной вначале типу заметно проще и сводится к реализации обертки над стандартным итератором `std::map`


:white_check_mark: All Rules (8 / 8) Passed

      :crown: Good job! this pull request is aligned with your organization's best practices!

      :point_right: You can review your rules settings at smart policy management :point_left:

:point_right: click here to view a full list of the events :point_left:


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Taskcluster-GitHub attempted to create a task for this event with the following scopes:

```
[
  "assume:repo:github.com/mozilla/code-review:pull-request",
  "queue:route:statuses",
  "queue:scheduler-id:taskcluster-github"
]
```

The expansion of these scopes is not sufficient to create the task, leading to the following:

Client ID static/taskcluster/github does not have sufficient scopes and is missing the following scopes:

```
{
  "AnyOf": [
    {
      "AnyOf": [
        "queue:create-task:highest:aws-provisioner-v1/github-worker",
        "queue:create-task:very-high:aws-provisioner-v1/github-worker",
        "queue:create-task:high:aws-provisioner-v1/github-worker",
        "queue:create-task:medium:aws-provisioner-v1/github-worker",
        "queue:create-task:low:aws-provisioner-v1/github-worker",
        "queue:create-task:very-low:aws-provisioner-v1/github-worker",
        "queue:create-task:lowest:aws-provisioner-v1/github-worker"
      ]
    },
    {
      "AnyOf": [
        "queue:create-task:aws-provisioner-v1/github-worker",
        {
          "AllOf": [
            "queue:define-task:aws-provisioner-v1/github-worker",
            "queue:task-group-id:taskcluster-github/Vee5UOMPT5O8eb3jl3Zlvg",
            "queue:schedule-task:taskcluster-github/Vee5UOMPT5O8eb3jl3Zlvg/LwA1DKCeS6KEgGwSlYyPEA"
          ]
        }
      ]
    }
  ]
}
```

This request requires the client to satisfy the following scope expression:

```
{
  "AllOf": [
    "queue:route:statuses",
    {
      "AnyOf": [
        {
          "AllOf": [
            "queue:scheduler-id:taskcluster-github",
            {
              "AnyOf": [
                "queue:create-task:highest:aws-provisioner-v1/github-worker",
                "queue:create-task:very-high:aws-provisioner-v1/github-worker",
                "queue:create-task:high:aws-provisioner-v1/github-worker",
                "queue:create-task:medium:aws-provisioner-v1/github-worker",
                "queue:create-task:low:aws-provisioner-v1/github-worker",
                "queue:create-task:very-low:aws-provisioner-v1/github-worker",
                "queue:create-task:lowest:aws-provisioner-v1/github-worker"
              ]
            }
          ]
        },
        {
          "AnyOf": [
            "queue:create-task:aws-provisioner-v1/github-worker",
            {
              "AllOf": [
                "queue:define-task:aws-provisioner-v1/github-worker",
                "queue:task-group-id:taskcluster-github/Vee5UOMPT5O8eb3jl3Zlvg",
                "queue:schedule-task:taskcluster-github/Vee5UOMPT5O8eb3jl3Zlvg/LwA1DKCeS6KEgGwSlYyPEA"
              ]
            }
          ]
        }
      ]
    }
  ]
}
```

---

* method:     createTask
* errorCode:  InsufficientScopes
* statusCode: 403
* time:       2019-11-07T13:29:03.025Z

</details>


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Within this commit I have installed the external links from Jwt and Barryvdh


Reverted because of a merge race between #28828 and #29208.


perfect! Good Fix!!


Если вы пишете реализации в заголовочном файле, то они обязательно должны быть за`inline`ены, иначе вы получите ошибку 'multiple definitions', когда попробуете собрать проект из нескольких файлов


I have been using the `catchfilebetweentags` method to include code in my latex docs - as documented in the 2.5.3 docs https://agda.readthedocs.io/en/v2.5.3/tools/generating-latex.html but somehow gone from the 2.6 documentation.  That way there isn't two sets of codes to maintain -- and, as a bonus, you don't need to insure that your paper typechecks as-is.


@marijnh There's actually a critical typo here, you swapped the two arguments `text` and `html`


good Job!! You guys have 2 Test Programs!


Should be
`doPaste(view, text, html, e)`


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The new docs https://agda.readthedocs.io/en/v2.6.0.1/tools/generating-latex.html#including-agda-code-in-a-larger-latex-document present a different way to do it. I think I prefer the `catchfilebetweentags` method.


Других претензий к вашей реализации у меня нет. В целом читаемость кода хорошая


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TODO: Change to NeveRest 3.7 Motor
https://www.andymark.com/products/neverest-orbital-3-7-gearmotor


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Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @faylixe was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


It's leftover from NXT. We can remove it.


You should avoid concatenating text for language reasons, because word order is often different between languages. Instead use the {$a} arguments and pass the data into the lang key to be formated:

```
$string['accesskey'] = 'Access key, {$a}';

or

$string['cliincorrectvalueerror'] = 'Error, incorrect value "{$a->value}" for "{$a->option}"';
```

In this particular case though, I don't think we even need to show the length at all, we only need 1 heading


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> I have tried your fork for user registrationbut got following error:
>
> `KeyError: "Got KeyError when attempting to get a value for field access_token on serializer JWTSerializer.\nThe serializer field might be named incorrectly and not match any attribute or key on the dict instance.\nOriginal exception text was: 'access_token'."`
>
> I notice the default token model is rest_framework.authtoken.models.Token, do we need to define our custom model in setting REST_AUTH_TOKEN_MODEL to work with rest_framework_simplejwt?

Is the normal authentication with SimpleJWT working correctly?


this should be >, otherwise it doesn't work. Alternatively, check the return value?


Second Commit


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![](https://github.trello.services/images/mini-trello-icon.png) [Add new required classes](https://trello.com/c/Zq9EZ98B/14-add-new-required-classes)


thanks for the catch!


> Quero retornar pra essa branch

Faz o pull pelo sourcetree. Botei tudo certinho de novo o que achei que tinha perdido.


👍🏽
I think upstream did something to support it. Not sure exactly what

On Thu, 7 Nov 2019 at 13:23 Vaidas Pilkauskas <notifications@github.com>
wrote:

> I will get rid of this feature with the next rebase. Product wise it's a
> terrible implementation. And I have no good ideas how to make it work with
> IDEA module structure.
>
> On Thu, Nov 7, 2019 at 1:16 PM Ittai Zeidman <notifications@github.com>
> wrote:
>
> > @liucijus <https://github.com/liucijus> do we have an issue to suggest
> > this on upstream? We need to have a task per every commit here for
> > upstreaming. We have one for sources and the other one is on Zachi.
> >
> > —
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why disable these modules?


I have successfully used `catchfilebetweentags` and `ExecuteMetadata` in the past, but I tried to use it again a month ago and it was incompatible with half my other packages. So I simply put all the code in the paper and used `AgdaHide` etc.


I was using only social authentication using rest auth, hence i might have missed this one.


I don't think we should be manually verifying the TOTP, there is a method for this:

https://github.com/catalyst/moodle-tool_mfa/blob/master/factor/totp/extlib/OTPHP/TOTP.php#L104

The key difference is that there should be a window of time for which we accept valid codes, ie quite often I enter a code and by the time I enter it the code has changed, it should accept both the current code and the last code. ie have a window of say 30 seconds, or at least 10 seconds


Tx, I agree. Fixed in https://github.com/nextgis/nextgisweb/commit/cca201d41a75b9b96e3e2914724dd42fdd93a6ac


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I did but I didn't push the updated HTML request yet Lonnie, Ashley still working on it making changes & still don't have the JS from Grayson to link the JS to the Admin Page many other changes have been done since that last update.


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Sigh.  I've failed with `AgdaHide` because it forces me to show the code in a particular order, and also makes it hard to show some things just partially.

Maybe 1) see if there's an updated version of `catchfilebetweentags` that works with the other packages, or 2) use the method in the current Agda docs?


I would rather fix it properly, see #471


I detected an issue when trying to compile the sources against IDA 7.4 with VS 2017 and QT 5.13.
Using the DLL compiled against IDA 7.3 works fine so far with IDA 7.4 and my small test exe.
I will now try with my big one, but this one last ran in 12h so it will take time...

The exception happens when creating the chooser (class list window) after processing is done.


Changed in d33d948b1


Does this actually work? 🔥


Renamed


Be aware that all of this needs to be automated in the `Worker` controller extensions. Anything making this easier will help us :)


Great. Two more things:
1. Consider commenting there and saying we're running with it and are seeing a lot of value for users (which can be shared with the rest of the scala ecosystem).
2. Please make sure you have a tracking card for it on asana


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This isn't being escaped correctly, this looks better:

https://github.com/catalyst/moodle-tool_mfa/blob/master/factor/totp/extlib/OTPHP/OTP.php#L94


Very true. Graciela.


Changed in fa151283


changes


на будущее - initial commit делал отдельным. Так удобней и правильнее - сейчас просто нельзя построить дифф между тем что было и что стало. Это благо все в одном коммите...


Fixed


Fixed b6a6f187


Fixed $this->data = serialize($this->data);


GFGFGF


ну не знаю у меня так код и выполняется, можешь у себя проверить? @elpiankova


Changed in d5eaecf00a5c10568280537132449c613ada38bb


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This reflects the state of the art in some sense. You allocate an ancilla wire initialized to false; you use it in the circuit in arbitrary ways; and then you try to de-allocate it. That only succeeds if the wire is back in state = false. Otherwise you get an exception. The example ‘bad’ mimics that.

The story would then go that instead of letting the programmer write whatever and do a runtime check we will exploit dependent types to keep track of the value of the ancilla wire and only typecheck if the value Is the expected one.

—Amr

On Nov 7, 2019, at 08:17, Jacques Carette <notifications@github.com<mailto:notifications@github.com>> wrote:

So is the explanation for 'bad' essentially the same as what the type of trace eventually tells us: if we try to trace out something that is not 'constant', things go wrong?

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> It is true that it belong semantically there, but `YarnTestBase` is in `flink-yarn-tests`, but the method is also called by other tests in the `flink-yarn` module, which means that moving the method there, will introduce a circular dependency.

The utility could still live in `flink-yarn`. `YarnTestBase#createYarnClusterDescriptor` could simply be a user of it.


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Необходимо исправить:
Сайт:
- [x] http://my-site.com, http://my-next-site.ru* - Необходимо позволить пользователю вводить знак `-` в названии сайта.
- [x] http://yandex.com.ru, http://site.moscow.ru* - Необходимо позволить пользователю вводить адрес сайта третьего и более уровней.
- [x] http://site.r, https://site.r* - Название домена верхнего уровня должно состоять минимум из двух символов.


I'm OK with the changes.


Ok :D


Script created to import results from json file.  Previous intention was to use manage.py loaddata but loaddata doesn't call save method.  This script will be called by django-runscript, part of django-extensions.


Super Excited for you to try your first autonomous today!
TODO: Correct ` strafeRightEncoder`


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Nice, what's left is this annoying [bug](https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=224740) that needs user to interrupt to resume build.


@unused
:D


@thedrow @georgepsarakis should we revert this for 4.6.6 release?


@mapx- Fake `HD` button for NFL and NCAAF on homepage `http://sports24.club/` too, maybe adding `sports24.club##.btn-outline-primary:has-text(/HD$/)` could work but seems kind of generic - what do you think?


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Shouldn't that be `style.css`, in order to picked up by wp-admin? (Check `/wp-admin/themes.php?theme=planet4-master-theme`).


🔥 Device tests completed (Failed) on TvOS on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=3221882)(TvOS): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/d16-4/011aaf7ccb6f28c2e3d8c8cd6b8a7369d851a56c/3221882/device-tests/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary>2 tests failed, 111 tests passed.</summary>

## Failed tests

 * monotouch-test/tvOS - device/Debug (all optimizations): Failed
 * mscorlib/tvOS - device/Debug: SGenConc: TimedOut
</details>


Tested code that works.


promise return update


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Same comment here


This is wrong.