Hey @zsoltbalogh  this means that by default all of our docker containers from this image will have gogo shell open to external connections.  Is this a security problem?  Previously gogo shell was enabled by default but that is because it only allowed localhost connections, now by default gogo shell will allow connections from 0.0.0.0


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Found spelling mistakes in documentation file tutorials/aaa-master-ISDD-1.txt<<
 ISDD handson GitHub
 Found spelling mistakes in documentation file tutorials/aaa-master-ISDD-2.txt<<
 ISDD handson ISDD ISDD


arreglado??


* Example with one variable
  * One line replacement
    ```
    -((X-1)&X) == 0
    +powerof2(X)
    ```
  * Detailed adjustment
    ```
    +powerof2
     (
    -(X-1)&
     X)
    - == 0
    ```
* Example with two variables
  * One line replacement
    ```
    -A[I/NBBY] |= 1<<(I%NBBY)
    +setbit(A, I)
    ```
  * Detailed adjustment
    ```
    +setbit(
     A
    -[I/NBBY] |= 1<<(
    +,
     I
    -%NBBY
     )
    ```


Ai pus „ ; ” după for, ceea ce l-a „omorât”.


This could be simplified by using `$(du -b $0 | cut -f2)`


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Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @sigmavirus24 was added to conda-forge. Welcome to conda-forge!
  Go to https://github.com/orgs/conda-forge/invitation see your invitation.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


I make a report showing the issue (with warning …)


change name of the file to "class_1.py" to make it nicely formatted on github. :)


Hayır tabi ki yok :D İlgilenen olmadığı için çeviriye devam ediyordum bende zaten.


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Comment correction :-)


@Craftstar15 This is a known issue for macos (its current impl. depends on some more symbols)
I made a small patch (and pull requests will be merged soon) DMGs for Temporary use at https://github.com/ChristopherHX/mcpelauncher-manifest/releases/tag/MacOs1.3


Nu apar niciunde șirul în interiorul for-ului.
Uită-te cum faci mai sus când parcurgi șirul sirStack și îl copiezi caracter cu caracter în sirHeap.
O parcurgere similară ai nevoie și aici doar că vei lucra cu doar unul din șiruri (că au conținut identic). Trebuie să verifici valoarea lui sirXXX[j] în if.


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What is 256? That's a magic number, I would recommend assigning a const with meaning to it.


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Refactored


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Deployment failed with the following error:

~~~
The domain used as an alias outtripper.com is not verified yet. Please verify it.
~~~


Această variabilă e numerică, ține numărul cuvintelor. Nu e corect să fie char. Trebuie să fie short, int, long ...


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Deployment failed with the following error:

~~~
The property `type` is not allowed in now.json when using Now 2.0 – please remove it.
~~~


tady není flex ani potřeba, divy se automaticky řadí pod sebe 😉


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aha, moc děkuju :)


TeamCity Bvcms / Build [Build 2676](https://builds.tpsdb.com/viewLog.html?buildId=9743&buildTypeId=Bvcms_Build) is now running


TeamCity Bvcms / Build [Build 2675](https://builds.tpsdb.com/viewLog.html?buildId=9742&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Tests failed: 2, passed: 158 Build time: 00:27:37
### Failed tests
```
Webapp collection (1): IntegrationTests.Areas.OnlineReg.Views.OnlineRegViewsTests.Should_Change_Payment_Methods: System.NullReferenceException : Object reference not set to an instance of an object.
   at IntegrationTests.Areas.OnlineReg.Views.OnlineRegViewsTests.Should_Change_Payment_Methods() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\OnlineReg\Views\OnlineRegViewsTests.cs:line 58

Webapp collection (1): IntegrationTests.Areas.Reports.Views.Reports.ApplicationTests.Application_Report_Should_Have_Answers: Shouldly.ShouldAssertException : PageSource
    should contain (case insensitive comparison)
"ThisTextMustAppearInTests"
    but was actually
"<html lang="en-US"><head>
    <link rel="shortcut icon" href="/favicon.ico?v=3">
    <meta charset..."
   at IntegrationTests.Areas.Reports.Views.Reports.ApplicationTests.Application_Report_Should_Have_Answers() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Reports\Views\Reports\ApplicationTests.cs:line 103

```


Yep. that's correct.


- created DbContext class
- created Department.cs

- added "AutomaticMigrationDataLossAllowed = true;" to Configuration.cs
- In the Global.asax, add the following line:
  Database.SetInitializer(new MigrateDatabaseToLatestVersion<Models.StoreContext, Migrations.Configuration>());

- added Department & City models


thanks https://apkadvice.com/


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develop (punyasloka95) - x86_64-Linux-Ubuntu-18.04-custom_check: Build Failed

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Glenn, is it the same as https://github.com/gwaldron/osgearth/pull/1353 ? Why this should not work ?


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Ну можете же, принимаю.
Спасибо за терпение и упорство )


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no se que pasa


tyhle menší recepty měly společnou třídu `.recept`, která se dala využít pro ty společné vlastnosti receptů 2-5 a nemusela by si to kopírovat a psát u každého zvlášť 🙂


Why would we want this? It increases coupling and decreases testability? Better ask ourselves why we need it


Ok. Not sure why they need to go first, but I am fine with that anyway. Whatever you feel is most sensible.


Não era


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develop (punyasloka95) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


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Thanks. Fixed.


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Minder mee eens, de class is veel explicieter.


Super práce 🙂 🥇 ... k dokonalosti tomu už chybí jen ten barevný overlay přes obrázky a stín u textu, aby text byl čitejnější 🙂


As I'm more used to C than to C++, I have difficulties to understand this code and would have to look up the advanced C++ stuff on the internet.

If it doesn't bring a huge performance benefit (which I think it doesn't), I'd rather keep the previous implementation, even though it looks very clean in the end.


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git ignore


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He forged the g in changed.


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Since we are accessing function IsAllDigits() and it is outside the Main() method, i had to create an instance to access the variables inside IsAllDigits().


Correct


This should've been 5.0.1.dev0, but zest.releaser thought otherwise and I didn't pay enough attention.


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This should've been 4.4.0, but zest.releaser thought otherwise (because the next version number in the changelog and in setup.py disagreed) and I didn't pay enough attention.


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tady, když si vložila `a`, tak bude potřeba tu barvu textu nastavit přímo na ty `a`, protože jinak budou ošklivě modrý, jako odkazy z devadesátek 😉


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Not to be used!


takhle je to o hodně lepší a obrázek zůstane tam, kde má 👍


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De ce sirStack ? sirStack e variabila șir... Accesarea elementului din tablou se face cu sirStack[j].


@luk1337 ty for info


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Exclui o arquivo que continha o gerador de palavras e coloquei ele no mesmo arquivo da arvore binaria e futuramente a thread.


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@arhimondr : Do we want to change `QueryResults#updateType` first?


Hi CJ,had been following your channel since a while.Since the 500px API cannot be used anymore.I have tried to use
unsplash.
I need some help on the getting the images.Please provide me suggestions as what I should do.
Sharing the files and scenerio.

main.js:
const API_URL = 'https://api.unsplash.com/search/photos/?client_id=xdxdxdxdxd';

//grab the first element on the page which has the form tag.
const form = document.querySelector('form');
const input = document.querySelector('input');
const loadingImage = document.querySelector('#loadingImage');

loadingImage.style.display = 'none';

//add an event listener:
form.addEventListener('submit', formSubmitted);

function formSubmitted(event) {
    event.preventDefault();
    // console.log(event);
    const searchQuery = input.value;
    //console.log(searchQuery);
    search(searchQuery)
        .then(displayImages);
}

function search(searchQuery) {

    const url = `${API_URL}&query=${searchQuery}`;
    //console.log(url);
    loadingImage.style.display = '';
    return fetch(url)
        .then(response => response.json())
        .then(result => {

            return result.results.forEach(photo => { let photos = photo.urls; });
        });

}

function displayImages(image) {
    console.log(image);
}


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Found spelling mistakes in documentation file tutorials/aaa-master-ISDD-1.txt<<
 ISDD handson GitHub
 Found spelling mistakes in documentation file tutorials/aaa-master-ISDD-2.txt<<
 ISDD handson ISDD ISDD


Mostly done with the form structure, minor changes to be done later


*shame* ;)


I initially thought i need to create two instances to access the variables outside main method. However, this was not needed. The code should still work with the Instance p.
p2 can be discarded.


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Since the function "public bool IsAllDigits(string userValue)" is of boolean type and accepts a string, the return type should also be a boolean value.


Deployment failed with the following error:

~~~
The option `--prod` is not supported for Now 1.0 deployments. To manually alias a deployment, use `now alias` instead.
~~~


Se había borrado el Readme


@arhimondr : What do you mean by re-throw it without catching?


Aqui eu testo se o gerador funciona e se ele realmente armazena na árvore. Tudo certo, ele armazena. Coloquei pra printar na tela as palavras aleatorias pra poder ver se o método de pesquisa funciona. Tudo está funcionando. Agora só falta a parte de threads, de fazer com que ele gere, armazene e pesquise concomitantemente.


Wow good eye for detail @dmontagu. Bento 0.4 will send telemetry to new endpoints. But we will still send that hash as part of the post body, only to keep our old telemetry dashboards from breaking while we wait for at least a few days of data to pour into our new tables. We'll be removing that as soon as that happens by EOW.


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ty kulatý ikonky není potřeba absolutně pozicovat, mohlo by to taky dělat problémy při responzivitě, když je to natvrdo od okraje napozicovaný a rozpadnout se 🙂 ... když u nich zrušíš to pozicování `absolute` (nastavíš původní hodnotu "static"), tak to máš hotový i bez pozicování, obrázky budou vždy na středu, protože máš na to divu, ve kterém jsou nastavený `text-align: center `, obrázky jsou inline elementy, stejně jako text, tak se taky na střed zarovnají 👍


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const reader = require('readline-sync');


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> [
>
> # @! [messenger-code] ( [https://user-images.githubusercontent.com/56504649/67639617-95ddf100-f924-11e9-91a0-586c21ee1003.jpg](https://user-images.githubusercontent.com/56504649/67639617-95ddf100-f924-11e9-91a0-586c21ee1003.jpg)%5D(url) ) เหมือนกัน)

# #311 @discardableresut สาธารณะ func


Už to vypadá lépe 😉  ... nahoře jen drobnosti, který by se daly doladit ... díky za opravu 👍


Curious: what does the `(n)` signify?

BTW, 5.5 is available.


[R/condprob_fortran.R:184:1:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/condprob_fortran.R#L184) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
condprob_dp <- function(
^
```
[R/condprob_fortran.R:269:1:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/condprob_fortran.R#L269) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
condprob_dq <- function(
^
```
[R/mbd_integrate.R:7:1:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_integrate.R#L7) *style:* **Variable and function name style should be snake_case.**
```r
mbd_ode_FORTRAN <- function(
^~~~~~~~~~~~~~~
```
[R/mbd_integrate.R:17:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_integrate.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
  N <- length(initprobs)
  ^
```


 calculate_check_digit() computes only the check digit and returns a string. Two things can break the function:
1) If the string is greater or lesser than 11
2) If the string has alphanumeric characters.
I have validated for these things so that input given to this function does not fail or break.


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* https://jw02-eu7xpqz0v.now.sh
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* https://jw02.wj9.now.sh
* https://jw02-git-master.wj9.now.sh


Hi. Does the feed have both an icon (for the table "superpower_categories") and an image (for the table "superpowers")?


[R/DAISIE_area_params.R:16:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_area_params.R#L16) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
are_area_pars <- function(area_pars) {
^
```
[R/DAISIE_check_format.R:6:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_check_format.R#L6) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
are_rates <- function(x) {
^
```
[R/DAISIE_check_format.R:91:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_check_format.R#L91) *style:* **Commented code should be removed.**
```r
    # if (!"branching_times" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:92:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_check_format.R#L92) *style:* **Commented code should be removed.**
```r
    # if (!"stac" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:93:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_check_format.R#L93) *style:* **Commented code should be removed.**
```r
    # if (!"missing_species" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:107:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_check_format.R#L107) *style:* **functions should have cyclomatic complexity of less than 15, this has 75.**
```r
are_DAISIE_create_sim_pars <- function(pars) {
^
```
[R/DAISIE_check_format.R:107:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_check_format.R#L107) *style:* **Variable and function name style should be snake_case.**
```r
are_DAISIE_create_sim_pars <- function(pars) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:18:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_create_island.R#L18) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_sim_params.R:27:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_create_sim_params.R#L27) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_sim_pars <- function(time = 10,
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_sim_params.R:28:31:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_create_sim_params.R#L28) *style:* **Variable and function name style should be snake_case.**
```r
                              M = 1000,
                              ^
```
[R/DAISIE_create_sim_params.R:40:31:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_create_sim_params.R#L40) *style:* **Variable and function name style should be snake_case.**
```r
                              Apars = NULL,
                              ^~~~~
```
[R/DAISIE_create_sim_params.R:41:31:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_create_sim_params.R#L41) *style:* **Variable and function name style should be snake_case.**
```r
                              Epars = NULL,
                              ^~~~~
```
[R/DAISIE_data.R:8:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:48:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:53:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L53) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:93:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:97:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L97) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:105:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L105) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L125) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:128:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:159:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:162:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L162) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:198:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L198) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:248:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L248) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:257:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:271:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L271) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:287:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L287) *style:* **Lines should not be more than 80 characters.**
```r
#' format, accepted by DAISIE_ML, DAISIE_SR_ML, DAISIE_loglik_all and DAISIE_SR_loglik_all
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:322:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_data.R#L322) *style:* **Lines should not be more than 80 characters.**
```r
#' @seealso \code{\link{DAISIE_dataprep}}, \code{\link{DAISIE_ML}}, \code{\link{DAISIE_SR_ML}}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L91) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:101:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L101) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L116) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L118) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L131) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
DAISIE_dataprep <- function(datatable,
^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L131) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_dataprep <- function(datatable,
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:133:28:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
                           M,
                           ^
```
[R/DAISIE_dataprep.R:141:13:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L141) *style:* **Variable and function name style should be snake_case.**
```r
  datatable$Missing_species <- as.numeric(as.character
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:40:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L152) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      not_present_type1 <- DDD::roundn( (M / number_colonisations) *
                                       ^
```
[R/DAISIE_dataprep.R:155:40:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L155) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      not_present_type2 <- DDD::roundn( (M / number_colonisations) *
                                       ^
```
[R/DAISIE_dataprep.R:168:13:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L168) *warning:* **Avoid 1:nrow(...) expressions, use seq_len.**
```r
  for (i in 1:nrow(datatable)) {
            ^
```
[R/DAISIE_dataprep.R:198:37:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_dataprep.R#L198) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
      if (max(the_brts) > island_age){
                                    ^~
```
[R/DAISIE_ExpEIN.R:2:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:6:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:7:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:27:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:28:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Compute the expected values at t = 4, for a mainland pool size of 1000 potential
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:29:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
#' # colonists and a vector of 5 parameters (cladogenesis, extinction, clade-level carrying
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:31:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_ExpEIN.R:37:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:39:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
^~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:39:36:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
                                   ^
```
[R/DAISIE_ExpEIN.R:39:39:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
                                      ^~~~~~
```
[R/DAISIE_ExpEIN.R:46:8:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L46) *style:* **Variable and function name style should be snake_case.**
```r
       M2 <- M - DDD::roundn(pars1[11] * M)
       ^~
```
[R/DAISIE_ExpEIN.R:48:8:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L48) *style:* **Variable and function name style should be snake_case.**
```r
       M2 <- M
       ^~
```
[R/DAISIE_ExpEIN.R:50:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
   A <- mu - lac
   ^
```
[R/DAISIE_ExpEIN.R:51:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L51) *style:* **Variable and function name style should be snake_case.**
```r
   B <- lac + mu + ga + laa
   ^
```
[R/DAISIE_ExpEIN.R:52:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L52) *style:* **Variable and function name style should be snake_case.**
```r
   C <- laa + 2 * lac + ga
   ^
```
[R/DAISIE_ExpEIN.R:53:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L53) *style:* **Variable and function name style should be snake_case.**
```r
   DD <- laa + 2 * lac
   ^~
```
[R/DAISIE_ExpEIN.R:54:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L54) *style:* **Variable and function name style should be snake_case.**
```r
   E0 <- initEI[1]
   ^~
```
[R/DAISIE_ExpEIN.R:55:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
   I0 <- initEI[2]
   ^~
```
[R/DAISIE_ExpEIN.R:57:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L57) *style:* **Variable and function name style should be snake_case.**
```r
      Imm <- ga * M2 / B
      ^~~
```
[R/DAISIE_ExpEIN.R:58:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
      End <- DD / A * Imm
      ^~~
```
[R/DAISIE_ExpEIN.R:60:8:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L60) *style:* **Commented code should be removed.**
```r
      #Imm = M2 * ga / B * (1 - exp(-B * t))
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:63:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L63) *style:* **Variable and function name style should be snake_case.**
```r
      Imm <- M2 * ga / B - (M2 * ga / B - I0) * exp(-B * t)
      ^~~
```
[R/DAISIE_ExpEIN.R:64:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
      End <- DD / C * (M2 * ga / A - M2 * ga / B +
      ^~~
```
[R/DAISIE_ExpEIN.R:68:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L68) *style:* **Variable and function name style should be snake_case.**
```r
   All <- End + Imm
   ^~~
```
[R/DAISIE_ExpEIN.R:69:4:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_ExpEIN.R#L69) *style:* **Variable and function name style should be snake_case.**
```r
   expEIN <- list(End, Imm, All)
   ^~~~~~
```
[R/DAISIE_extract_stt_median.R:5:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_extract_stt_median.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_extract_stt_median <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_extract_stt_median.R:5:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_extract_stt_median.R#L5) *warning:* **local variable ‘time’ assigned but may not be used**
```r
  time <- max(island_replicates[[1]][[1]]$stt_all[, 1])
  ^~~~
```
[R/DAISIE_format_CS_full_stt.R:13:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS_full_stt.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
DAISIE_format_CS_full_stt <- function(island_replicates,
^
```
[R/DAISIE_format_CS_full_stt.R:13:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS_full_stt.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_CS_full_stt <- function(island_replicates,
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS_full_stt.R:15:39:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS_full_stt.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                                      M,
                                      ^
```
[R/DAISIE_format_CS_full_stt.R:198:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS_full_stt.R#L198) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/DAISIE_format_CS_full_stt.R:199:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS_full_stt.R#L199) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/DAISIE_format_CS.R:13:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
DAISIE_format_CS <- function(island_replicates,
^
```
[R/DAISIE_format_CS.R:13:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_CS <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS.R:15:30:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_CS.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                             M,
                             ^
```
[R/DAISIE_format_GW.R:17:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L17) *style:* **functions should have cyclomatic complexity of less than 15, this has 39.**
```r
DAISIE_format_GW <- function(island_replicates,
^
```
[R/DAISIE_format_GW.R:17:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_GW <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:19:29:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
                            M,
                            ^
```
[R/DAISIE_format_GW.R:27:15:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L27) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for (rep in 1:length(island_replicates)) {
              ^
```
[R/DAISIE_format_GW.R:31:15:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L31) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(full_list)) {
              ^
```
[R/DAISIE_format_GW.R:35:19:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L35) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for (j in 1:length(full_list[[i]]$taxon_list)) {
                  ^
```
[R/DAISIE_format_GW.R:48:15:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L48) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(full_list)) {
              ^
```
[R/DAISIE_format_GW.R:54:19:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L54) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for (j in 1:length(full_list[[i]]$taxon_list)) {
                  ^
```
[R/DAISIE_format_GW.R:55:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
          init_nonend_spec_list[[i]] <- full_list[[i]]$taxon_list[[1]]$init_nonend_spec
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:56:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
          init_end_spec_list[[i]] <- full_list[[i]]$taxon_list[[1]]$init_end_spec
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:57:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L57) *style:* **Lines should not be more than 80 characters.**
```r
          carrying_capacity_list[[i]] <- full_list[[i]]$taxon_list[[1]]$carrying_capacity
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:71:14:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L71) *style:* **Commas should always have a space after.**
```r
    stt_all[,"Time"] <- rev(seq(from = 0,
             ^
```
[R/DAISIE_format_GW.R:76:11:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L76) *warning:* **local variable ‘row_index’ assigned but may not be used**
```r
          row_index <- max(which(stt_list[[x]][, "Time"] >= the_age))
          ^~~~~~~~~
```
[R/DAISIE_format_GW.R:93:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
          store_richness_time_slice[x, ] <- stt_list[[x]][max(which(stt_list[[x]][, "Time"] >= the_age)), 2:4]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:113:25:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L113) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
              for (j in 1:length(full_list[[i]]$taxon_list)) {
                        ^
```
[R/DAISIE_format_GW.R:114:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L114) *style:* **Lines should not be more than 80 characters.**
```r
                taxon_sublist_name <- paste0("taxon_sublist_", c(1:length(full_list[[i]]$taxon_list)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:114:66:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L114) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
                taxon_sublist_name <- paste0("taxon_sublist_", c(1:length(full_list[[i]]$taxon_list)))
                                                                 ^
```
[R/DAISIE_format_GW.R:116:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L116) *style:* **Lines should not be more than 80 characters.**
```r
                island_list <- append(island_list, list(get(taxon_sublist_name[[j]])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:128:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
                                 not_present = M, #check what not_present should be
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:136:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_GW.R#L136) *style:* **Lines should not be more than 80 characters.**
```r
                                 all_carrying_capacities = carrying_capacity_vec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:28:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L28) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_IW <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:30:30:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
                             M,
                             ^
```
[R/DAISIE_format_IW.R:36:15:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L36) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for (rep in 1:length(island_replicates)) {
              ^
```
[R/DAISIE_format_IW.R:44:17:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L44) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(the_island$taxon_list)) {
                ^
```
[R/DAISIE_format_IW.R:86:17:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L86) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (y in 1:length(the_island$taxon_list)) {
                ^
```
[R/DAISIE_format_IW.R:106:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L106) *style:* **Variable and function name style should be snake_case.**
```r
Add_brt_table <- function(island) {
^~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:117:15:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L117) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(island)) {
              ^
```
[R/DAISIE_format_IW.R:139:17:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L139) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(island_no_stac1or5)) {
                ^
```
[R/DAISIE_format_IW.R:143:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L143) *style:* **Variable and function name style should be snake_case.**
```r
      brts_IWK <- matrix(ncol = 4, nrow = length(brts))
      ^~~~~~~~
```
[R/DAISIE_format_IW.R:145:17:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L145) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(btimes)) {
                ^
```
[R/DAISIE_format_IW.R:161:17:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_format_IW.R#L161) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(stac1_5s)) {
                ^
```
[R/DAISIE_get_brts_mya.R:12:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_get_brts_mya.R#L12) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_get_brts_mya <- function(data_table) {
^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_IC.R:61:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_IC.R#L61) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_IC <- function(datalist,
^~~~~~~~~
```
[R/DAISIE_IC.R:70:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_IC.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
  MLE_obs <- DAISIE_ML(
  ^~~~~~~
```
[R/DAISIE_IC.R:97:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_IC.R#L97) *style:* **Variable and function name style should be snake_case.**
```r
  MLE <- rep(0, endmc)
  ^~~
```
[R/DAISIE_IC.R:98:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_IC.R#L98) *style:* **Variable and function name style should be snake_case.**
```r
  LL <- rep(0, endmc)
  ^~
```
[R/DAISIE_IC.R:125:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_IC.R#L125) *style:* **Variable and function name style should be snake_case.**
```r
  WIC <- -2 * MLE_obs$loglik - 2 * mean(LL - MLE)
  ^~~
```
[R/DAISIE_IC.R:126:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_IC.R#L126) *style:* **Variable and function name style should be snake_case.**
```r
  AICb <- -2 * MLE_obs$loglik - 4 * mean(LL - MLE_obs)
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:9:14:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L9) *warning:* **no visible global function definition for ‘create_area_pars’**
```r
    Apars <- create_area_pars(Apars[1], Apars[2], Apars[3], Apars[4])
             ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:11:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_ontogeny a string describing the type of island ontogeny. Can be \code{NULL},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:11:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L11) *warning:* **local variable ‘gam0’ assigned but may not be used**
```r
  gam0 <- parsvec[9]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:12:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L12) *warning:* **local variable ‘laa0’ assigned but may not be used**
```r
  laa0 <- parsvec[10]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:13:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L13) *warning:* **local variable ‘Epars’ assigned but may not be used**
```r
  Epars <- pars1[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:15:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L15) *warning:* **local variable ‘ddep’ assigned but may not be used**
```r
  ddep <- parsvec[13]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L16) *warning:* **local variable ‘ddep’ assigned but may not be used**
```r
  ddep <- parsvec[13]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L16) *warning:* **local variable ‘laa0’ assigned but may not be used**
```r
  laa0 <- pars1[10]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:18:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
#' Proceedings of the Royal Society of London B: Biological Sciences 281.1784 (2014): 20133227.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:19:41:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
island_area_vector <- function(timeval, Apars, island_ontogeny) {
                                        ^~~~~
```
[R/DAISIE_loglik_CS_time.R:27:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L27) *style:* **Variable and function name style should be snake_case.**
```r
    Apars <- create_area_pars(Apars[1], Apars[2], Apars[3], Apars[4])
    ^~~~~
```
[R/DAISIE_loglik_CS_time.R:39:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L39) *style:* **Commented code should be removed.**
```r
#parsvec[1:4] = Apars
 ^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:40:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L40) *style:* **Commented code should be removed.**
```r
#parsvec[5] = lac0
 ^~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:41:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L41) *style:* **Commented code should be removed.**
```r
#parsvec[6:7] = mupars
 ^~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:42:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L42) *style:* **Commented code should be removed.**
```r
#parsvec[8] = K0
 ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:43:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L43) *style:* **Commented code should be removed.**
```r
#parsvec[9] = gam0
 ^~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:44:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L44) *style:* **Commented code should be removed.**
```r
#parsvec[10] = laa0
 ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:45:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L45) *style:* **Commented code should be removed.**
```r
#parsvec[11] = island_ontogeny
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:46:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L46) *style:* **Commented code should be removed.**
```r
#parsvec[12] = kk
 ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:47:2:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L47) *style:* **Commented code should be removed.**
```r
#parsvec[13] = ddep
 ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:49:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_time <- function(t, x, parsvec) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:51:24:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L51) *style:* **Put spaces around all infix operators.**
```r
  lx <- (length(x) - 1)/2
                      ~^~
```
[R/DAISIE_loglik_CS_time.R:55:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  Apars <- parsvec[1:4]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:57:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L57) *style:* **Variable and function name style should be snake_case.**
```r
  Epars <- parsvec[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:58:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- parsvec[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:110:40:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L110) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    muvec[il2] * nn[in2] * xx1[ix2] + -(muvec[il3] + lacvec[il3]) *
                                       ^
```
[R/DAISIE_loglik_CS_time.R:116:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L116) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3 + 1] + lacvec[il3 + 1]) * nn[in3 + 1] * xx2[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:118:11:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L118) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  dx3 <- -(laavec[il3[1]] + lacvec[il3[1]] + gamvec[il3[1]] +
          ^
```
[R/DAISIE_loglik_CS_time.R:123:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L123) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_time2 <- function(t, x, parsvec) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:125:20:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L125) *style:* **Put spaces around all infix operators.**
```r
  lx <- (length(x))/3
                  ~^~
```
[R/DAISIE_loglik_CS_time.R:130:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
  Apars <- parsvec[1:4]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:132:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L132) *style:* **Variable and function name style should be snake_case.**
```r
  Epars <- parsvec[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:133:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- parsvec[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:200:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L200) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3] + lacvec[il3]) * nn[in3] * xx1[ix3] - gamvec[il3] * xx1[ix3]
     ^
```
[R/DAISIE_loglik_CS_time.R:202:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L202) *style:* **Lines should not be more than 80 characters.**
```r
  # immigration when there are n+k species: Q^k,n -> Q^M,k_n; n+k species present
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:210:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L210) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3 + 1] + lacvec[il3 + 1]) * nn[in3 + 1] * xx2[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:214:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L214) *style:* **Lines should not be more than 80 characters.**
```r
  # cladogenesis in one of the n-1 species: Q_M,n-1 -> Q_M,n; n+k-1 species present; rate once
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:215:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L215) *style:* **Lines should not be more than 80 characters.**
```r
  # extinction in one of the n+1 species: Q_M,n+1 -> Q_M,n; n+k+1 species present
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:219:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L219) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(lacvec[il3] + muvec[il3]) * nn[in3] * xx3[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:220:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L220) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(laavec[il3] + gamvec[il3]) * xx3[ix3]
     ^
```
[R/DAISIE_loglik_CS_time.R:225:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L225) *style:* **Commented code should be removed.**
```r
  # pars1[1:4] = Apars
    ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:226:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L226) *style:* **Commented code should be removed.**
```r
  # pars1[5] = lac0
    ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:227:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L227) *style:* **Commented code should be removed.**
```r
  # pars1[6:7] = mupars
    ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:228:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L228) *style:* **Commented code should be removed.**
```r
  # pars1[8] = K0
    ^~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:229:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L229) *style:* **Commented code should be removed.**
```r
  # pars1[9] = gam0
    ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:230:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L230) *style:* **Commented code should be removed.**
```r
  # pars1[10] = laa0
    ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:231:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L231) *style:* **Commented code should be removed.**
```r
  # pars1[11] = island_ontogeny
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:232:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L232) *style:* **Commented code should be removed.**
```r
  # pars1[12] = t
    ^~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:234:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L234) *style:* **Variable and function name style should be snake_case.**
```r
  Apars <- pars1[1:4]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:236:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L236) *style:* **Variable and function name style should be snake_case.**
```r
  Epars <- pars1[6:7]
  ^~~~~
```
[R/DAISIE_loglik_CS_time.R:237:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L237) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- pars1[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:249:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L249) *style:* **Variable and function name style should be snake_case.**
```r
  lacA <- lac0
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:250:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L250) *style:* **Variable and function name style should be snake_case.**
```r
  gamA <- gam0
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:251:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L251) *style:* **Variable and function name style should be snake_case.**
```r
  KA <- area * K0
  ^~
```
[R/DAISIE_loglik_CS_time.R:253:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L253) *style:* **Variable and function name style should be snake_case.**
```r
  K <- KA
  ^
```
[R/DAISIE_loglik_CS_time.R:254:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L254) *style:* **Variable and function name style should be snake_case.**
```r
  lacgamK <- c(lacgam, K)
  ^~~~~~~
```
[R/DAISIE_loglik_CS_time.R:258:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS_time.R#L258) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_integrate_time <- function(initprobs,
^~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:1:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L1) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_precomp <- function(pars,lx)
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:1:44:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L1) *style:* **Commas should always have a space after.**
```r
DAISIE_loglik_rhs_precomp <- function(pars,lx)
                                           ^
```
[R/DAISIE_loglik_CS.R:2:1:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L2) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_loglik_CS.R:3:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L3) *style:* **Use <-, not =, for assignment.**
```r
  lac = pars[1]
      ^
```
[R/DAISIE_loglik_CS.R:4:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L4) *style:* **Use <-, not =, for assignment.**
```r
  mu = pars[2]
     ^
```
[R/DAISIE_loglik_CS.R:5:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
  K = pars[3]
  ^
```
[R/DAISIE_loglik_CS.R:5:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L5) *style:* **Use <-, not =, for assignment.**
```r
  K = pars[3]
    ^
```
[R/DAISIE_loglik_CS.R:6:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L6) *style:* **Use <-, not =, for assignment.**
```r
  gam = pars[4]
      ^
```
[R/DAISIE_loglik_CS.R:7:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L7) *style:* **Use <-, not =, for assignment.**
```r
  laa = pars[5]
      ^
```
[R/DAISIE_loglik_CS.R:8:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L8) *style:* **Use <-, not =, for assignment.**
```r
  kk = pars[6]
     ^
```
[R/DAISIE_loglik_CS.R:8:16:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L8) *warning:* **no visible global function definition for ‘divdepvec_time’**
```r
    lacgamK <- divdepvec_time(lacgam, pars1, lx, k1, ddep, island_ontogeny)
               ^~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:9:8:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L9) *style:* **Use <-, not =, for assignment.**
```r
  ddep = pars[7]
       ^
```
[R/DAISIE_loglik_CS.R:11:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L11) *style:* **Use <-, not =, for assignment.**
```r
  nn = -2:(lx+2*kk+1)
     ^
```
[R/DAISIE_loglik_CS.R:11:14:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
            ~^~
```
[R/DAISIE_loglik_CS.R:11:16:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
              ~^~
```
[R/DAISIE_loglik_CS.R:11:19:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
                 ~^~
```
[R/DAISIE_loglik_CS.R:12:7:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L12) *style:* **Use <-, not =, for assignment.**
```r
  lnn = length(nn)
      ^
```
[R/DAISIE_loglik_CS.R:13:6:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L13) *style:* **Use <-, not =, for assignment.**
```r
  nn = pmax(rep(0,lnn),nn)
     ^
```
[R/DAISIE_loglik_CS.R:13:19:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L13) *style:* **Commas should always have a space after.**
```r
  nn = pmax(rep(0,lnn),nn)
                  ^
```
[R/DAISIE_loglik_CS.R:13:24:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L13) *style:* **Commas should always have a space after.**
```r
  nn = pmax(rep(0,lnn),nn)
                       ^
```
[R/DAISIE_loglik_CS.R:15:5:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L15) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(ddep == 0)
    ^
```
[R/DAISIE_loglik_CS.R:16:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L16) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:17:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L17) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:17:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L17) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:18:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L18) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = lac * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:18:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L18) *style:* **Commas should always have a space after.**
```r
    lacvec = lac * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:19:11:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L19) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:19:24:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L19) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:20:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L20) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:20:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L20) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:21:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L21) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 1)
           ^
```
[R/DAISIE_loglik_CS.R:22:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L22) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:23:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L23) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:23:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L23) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:24:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L24) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:24:25:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L24) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                        ^
```
[R/DAISIE_loglik_CS.R:24:30:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L24) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                             ^
```
[R/DAISIE_loglik_CS.R:24:43:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L24) *style:* **Put spaces around all infix operators.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                                         ~^~
```
[R/DAISIE_loglik_CS.R:25:11:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L25) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:25:24:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L25) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:26:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L26) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:26:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L26) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:27:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L27) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 2)
           ^
```
[R/DAISIE_loglik_CS.R:28:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L28) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:29:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L29) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:29:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L29) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:30:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L30) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:30:25:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L30) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
                        ^
```
[R/DAISIE_loglik_CS.R:30:30:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L30) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
                             ^
```
[R/DAISIE_loglik_CS.R:30:43:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L30) *style:* **Put spaces around all infix operators.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
                                         ~^~
```
[R/DAISIE_loglik_CS.R:31:11:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L31) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:31:24:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L31) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:32:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L32) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:32:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L32) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:33:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L33) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 11)
           ^
```
[R/DAISIE_loglik_CS.R:34:3:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L34) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:35:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L35) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:35:26:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L35) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:36:12:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L36) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:36:25:](https://github.com/rsetienne/DAISIE/blob/f171f6263cd0cf7fe20a58480325da5a3f26a490/R/DAISIE_loglik_CS.R#L36) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                        ^
```


[R/condprob_fortran.R:184:1:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/condprob_fortran.R#L184) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
condprob_dp <- function(
^
```
[R/condprob_fortran.R:269:1:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/condprob_fortran.R#L269) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
condprob_dq <- function(
^
```
[R/mbd_checks.R:9:13:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_checks.R#L9) *warning:* **no visible global function definition for ‘brts2time_intervals_and_births’**
```r
  births <- brts2time_intervals_and_births(brts)$births # nolint internal function
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mbd_conditioning.R:58:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_conditioning.R#L58) *warning:* **no visible global function definition for ‘check_pc’**
```r
  check_pc(pc = pc, debug_mode = debug_mode)
  ^~~~~~~~
```
[R/mbd_integrate.R:7:1:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_integrate.R#L7) *style:* **Variable and function name style should be snake_case.**
```r
mbd_ode_FORTRAN <- function(
^~~~~~~~~~~~~~~
```
[R/mbd_integrate.R:17:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_integrate.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
  N <- length(initprobs)
  ^
```
[R/mbd_main_utils.R:13:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_main_utils.R#L13) *warning:* **local variable ‘pkg_name’ assigned but may not be used**
```r
  pkg_name <- get_pkg_name() # nolint internal function
  ^~~~~~~~
```
[R/mbd_main_utils.R:13:15:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_main_utils.R#L13) *warning:* **no visible global function definition for ‘get_pkg_name’**
```r
  pkg_name <- get_pkg_name() # nolint internal function
              ^~~~~~~~~~~~
```
[R/mbd_main.R:45:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_main.R#L45) *warning:* **no visible global function definition for ‘print_info’**
```r
  print_info(brts = brts, n_0 = n_0, cond = cond, verbose = verbose) # nolint internal function
  ^~~~~~~~~~
```
[R/mbd_main.R:155:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_main.R#L155) *warning:* **no visible global function definition for ‘print_info’**
```r
  print_info(brts = brts, n_0 = n_0, cond = cond, verbose = verbose) # nolint internal function
  ^~~~~~~~~~
```
[R/mbd_ml.R:20:16:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_ml.R#L20) *warning:* **no visible global function definition for ‘get_param_names’**
```r
  par_names <- get_param_names() # nolint internal function
               ^~~~~~~~~~~~~~~
```
[R/mbd_ml.R:35:19:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_ml.R#L35) *warning:* **no visible global function definition for ‘pars_transform_back’**
```r
    optim_pars <- pars_transform_back(tr_optim_pars) # nolint internal function
                  ^~~~~~~~~~~~~~~~~~~
```
[R/mbd_ml.R:62:20:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_ml.R#L62) *warning:* **no visible global function definition for ‘pars_transform_forward’**
```r
  tr_start_pars <- pars_transform_forward(start_pars[optim_ids]) # nolint internal function
                   ^~~~~~~~~~~~~~~~~~~~~~
```
[R/mbd_pmb.R:7:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_pmb.R#L7) *warning:* **no visible global function definition for ‘check_brts’**
```r
  check_brts(brts = brts, n_0 = n_0)
  ^~~~~~~~~~
```
[R/mbd_pmb.R:21:11:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_pmb.R#L21) *warning:* **no visible global function definition for ‘brts2time_intervals_and_births’**
```r
  data <- brts2time_intervals_and_births(brts) # nolint internal function
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mbd_sim.R:10:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_sim.R#L10) *warning:* **no visible global function definition for ‘check_cond’**
```r
  check_cond(cond = cond, tips_interval = tips_interval, n_0 = n_0)
  ^~~~~~~~~~
```
[R/mbd_sim.R:11:3:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_sim.R#L11) *warning:* **no visible global function definition for ‘check_seed’**
```r
  check_seed(seed = seed)
  ^~~~~~~~~~
```
[R/mbd_sim.R:25:17:](https://github.com/Giappo/mbd/blob/16edd5c23a62e3d3ec48e817b0ce6a1832241b91/R/mbd_sim.R#L25) *warning:* **no visible global function definition for ‘initialize_l_matrix’**
```r
    l_matrix <- initialize_l_matrix(age = age, n_0 = n_0)
                ^~~~~~~~~~~~~~~~~~~
```


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TeamCity Bvcms / Build [Build 2676](https://builds.tpsdb.com/viewLog.html?buildId=9743&buildTypeId=Bvcms_Build) outcome was **SUCCESS**
Summary: Tests passed: 157 Build time: 00:27:48


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TeamCity Bvcms / Build [Build 2677](https://builds.tpsdb.com/viewLog.html?buildId=9744&buildTypeId=Bvcms_Build) outcome was **UNKNOWN**
Summary: Canceled (Error while applying patch; cannot find commit f14069114c53d97472dc62ffae0f6e62e02c5531 in the https://bvcms-teamcity@github.com/bvcms/bvcms repository, possible reason: refs/pull/708/merge branch was updated and the commit selected for the... Build time: 00:00:11


If we add this, it should just be the default.  No need to enable explicitly.  Plus, we have flags that we could set if we wanted to enable it.


není potřeba to pro mobil obalovat do těch 320px 🙂 , běžně se to nedělá a kdyby si to náhodou někdo zobrazil na malinkym mobilu, tak to uvidí takhle:
![image](https://user-images.githubusercontent.com/15943072/68611215-e410f980-04b9-11ea-92de-8a19cff0002c.png)


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flex tady není ani potřeba, divy se řadí sami pod sebe defaultně 👍


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:rocket:


Thanks! :) I will be more careful with formatting and tests next time.


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i = 4
d = 4.0
s = 'HackerRank '
# Declare second integer, double, and String variables.

# Read and save an integer, double, and String to your variables.

# Print the sum of both integer variables on a new line.

# Print the sum of the double variables on a new line.

# Concatenate and print the String variables on a new line
# The 's' variable above should be printed first.


Deploy preview for _website_ ready!

Built with commit undefined

https://hello-hubot-18e62uqm1.now.sh


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evapCoolerRefactor (mitchute) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


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I don’t think the order matters! I just meant listing both Stan Devs and Columbia


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Figure 1


I am again storing integer value of "i" as index value in sumOdd.
If ToString() is not used then we get wrong check digit value. For Example given string 03600029145:
1) With .ToString() we get output check digit as 2
2) Without .ToString() we get the output as 8 which is wrong.


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evapCoolerRefactor (mitchute) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (11 of 11 tests passed, 0 test warnings)

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Since i am storing an integer value in "strLen", i have to convert the string to integer type and then store it in variable strLen.


hi


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Oops, that'd be Google, not Googel. 😅


[R/condprob_fortran.R:185:1:](https://github.com/Giappo/mbd/blob/51257919dcc9d74c2bf6fe2246426994aa9fd006/R/condprob_fortran.R#L185) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
condprob_dp <- function(
^
```
[R/condprob_fortran.R:270:1:](https://github.com/Giappo/mbd/blob/51257919dcc9d74c2bf6fe2246426994aa9fd006/R/condprob_fortran.R#L270) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
condprob_dq <- function(
^
```
[R/mbd_integrate.R:7:1:](https://github.com/Giappo/mbd/blob/51257919dcc9d74c2bf6fe2246426994aa9fd006/R/mbd_integrate.R#L7) *style:* **Variable and function name style should be snake_case.**
```r
mbd_ode_FORTRAN <- function(
^~~~~~~~~~~~~~~
```
[R/mbd_integrate.R:17:3:](https://github.com/Giappo/mbd/blob/51257919dcc9d74c2bf6fe2246426994aa9fd006/R/mbd_integrate.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
  N <- length(initprobs)
  ^
```


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