<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Schema Validation Failed!
Rejecting Schema: https://community-tc.services.mozilla.com/schemas/queue/v1/create-task-request.json#
Errors:
  * data should NOT have additional properties: "0"
  * data should have required property 'provisionerId'
  * data should have required property 'workerType'
  * data should have required property 'deadline'
  * data.payload should be object
  * data should have required property 'metadata'

---

* method:     createTask
* errorCode:  InputValidationError
* statusCode: 400
* time:       2019-11-26T10:06:25.322Z

</details>


Successfully deployed to following URLs:

* https://convertmymoney-9obsr4brm.now.sh
* https://convertmymoney-wheat-ten.now.sh
* https://convertmymoney.rogerioramospinheiro.now.sh
* https://convertmymoney-git-master.rogerioramospinheiro.now.sh


>changed copyright strings


git is good software


Yep, I understand 👌 Not sure we can do better here.
We may want to write that inside `useCheckSlugForm` and return `checkUniqueness` something from the custom hook


Tabs vs. spaces.


Hi thaJeztah,
I really want to konw where the "distribution_based_engine.json" file is? And the specific functions and usage scenarios of this file. #378 cannot help me solve this problem yet.

Thank you!


Successfully deployed to following URLs:

* https://simple-tv-video-player-kjcrjrw1i.now.sh
* https://vid2tv.now.sh
* https://simple-tv-video-player.kubiaq.now.sh
* https://simple-tv-video-player-git-master.kubiaq.now.sh


Unfortunately, if you want to type this, you have to do by yourself... !


@nfeske: my input


Oh, non. I think you can import  and use `GetUserBySlugDocument` from `../generated/types` & use others types on `apollo.query`


Damn it to hell. Thanks.


<!-- PMABOT:SOB -->
This commit is missing Signed-Off-By line to indicate that you agree with phpMyAdmin Developer's Certificate of Origin. Please check [contributing documentation](https://github.com/phpmyadmin/phpmyadmin/blob/master/CONTRIBUTING.md) for more information.


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Thanks!


IBM Cloud [toolchain](https://cloud.ibm.com/devops/toolchains/ad452149-0e27-481e-889e-e26047d9198b?env_id=ibm%3Ayp%3Aeu-de "awesome-mixin"): [Delivery Pipeline](https://cloud.ibm.com/devops/pipelines/c6d6f93d-33bf-4235-bb17-fc701b2690c0 "awesome-mixin") deployed [awesome-mixin](https://github.com/cerasela-iordan/awesome-mixin/releases/tag/deploy-ibm-yp-eu-gb-flutterbyez-gmail.com-dev-20191126-101135 "deploy-ibm-yp-eu-gb-flutterbyez-gmail.com-dev-20191126-101135") to [dev](https://console.bluemix.net/apps/ec5ea3dc-d819-4e64-80b5-0b3ce7b52c3a?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:flutterbyez@gmail.com:dev"), including this commit


Sorry but I don't understand this check.

The extension is not even linked against this library, and doesn't use any symbol from it.

Won't it be simpler / better
* chek HAVE_CURL macro from php headers (meaning PHP was build with curl support) ?
* add a dependency on curl extension ?


Reads me comments


老师，请问这一段是什么意思？是还没有写完吗？


Successfully deployed to following URLs:

* https://movy-kby76ovqd.now.sh
* https://movy.now.sh
* https://movy.tobihoff.now.sh
* https://movy-git-master.tobihoff.now.sh


More     $CURL_LIBS is not defined anywhere, can't work if libcurl installed in non standard directory


Successfully deployed to following URLs:

* https://scd-cdp-portal-cugt9yh5u.now.sh
* https://scd-cdp-portal.mkr-js-prod.now.sh
* https://scd-cdp-portal-git-develop.mkr-js-prod.now.sh


Successfully deployed to following URLs:

* https://chameleon-ckrwr2qmr.now.sh
* https://chameleon-dead-plane.now.sh
* https://chameleon.ebury.now.sh
* https://chameleon-git-master.ebury.now.sh


@Adminiuga
it now fails on test using zigpy 0.11 , could you please update the test ?


Ok, with any JSON library it should be possible to supply the JSON in some form. Then perform the two tests I mentioned above (deserializing the serialized property and serializing all fields). It is ok if the tests only run on desktop and not IoT. But I am thinking - if on some platform you cannot do ser/deser then that platform is not good for running an ARK SDK because this is what it does - ser/deser (+parse string->JSON too, but in the tests you can skip the string->JSON parsing, I guess, depending on the JSON library used).


修复增加的readnetdarknet方法，gomod能够调用正确


#FORUM
##AGILE
##GIT
##MAEVEN


OK from @jnthn here: https://colabti.org/irclogger/irclogger_log/raku-dev?date=2019-11-26#l108

2019.11 release will reflect that.


MISE A JOUR


嘉扬CAS认证


Use `qsTranslate("action", "Transpose")` and benefit from MuseScore's translations


cas test


You can rewrite these a bit more idiomatically in one line like this:

```rust
    let width = std::env::args().nth(1).unwrap().parse::<usize>().expect("Invalid WIDTH specified");
```

If you want to use your custom error handler, you can use .unwrap_or_else() instead of .expect().


Successfully deployed to following URLs:

* https://bimber-api-d54r8qw56.now.sh
* https://bimber-api.now.sh
* https://bimber-api.kubiaq.now.sh
* https://bimber-api-git-master.kubiaq.now.sh


Read me comments 2


And also, could be a nice idea to have it reported in the MINFO


# Task 0
# Підготовка даних
# Зчитування даних і заміна "?" на "NA"
consumption <- read.table(file = "./household_power_consumption.txt", header = TRUE,
                          sep = ";", na.strings = "?")

# Виокремлення даних за 2 дні
TwoDays <- subset(consumption, Date == "1/2/2007" | Date == "2/2/2007")

# Створення нової змінної, зліпленої з двох
TwoDays$FullDate <- paste(TwoDays$Date, TwoDays$Time)

# Зміна з тексту на формат дати
TwoDays$FullDate <- strptime(TwoDays$FullDate, "%d/%m/%Y %H:%M:%S")
TwoDays$Date <- as.Date(TwoDays$Date, "%d/%m/%Y")

# Task 1

# Завдання параметрів якості (кількості пікселів)
png(filename="./plot1.png", width=480, height=480)
# Побудова гістограми
hist(TwoDays$Global_active_power, col = "red", xlab = "Global Active Power (kilowatts)",
     ylab = "Frequency", main = "Global Active Power")
# Функція dev.off призначена, щоб наступний графік не записався на попередній
dev.off()


Hi,
I've tested this fix and it does not work : I still have border black at bottom and bottom rigth.
Line 283 : the variable graphics is not used

Thx :)


# Curso JavaScript ES6
## Módulo 03 - Async/await
## Aula 02 - Configurando axios

### Vamos utilizar a biblioteca axios que vai dar pra gente o acesso a uma API para podermos trabalhar com requisições assincronias

### No nosso caso vamos acessar a API do github

### 1° - Vamos começar adicionando o axios
**Terminal**: _yarn add axios_

### Trabalhando com o axios

**Vamos importar**
import axios from 'axios';

**Vamos criar uma classe com um método estático com o uso de uma função async **

import axios from 'axios';

class Api {
    static async getUserInfo(username) {

    }
}

Vamos acessar a api do git hub usando axios retornado para um atributo co auxílio do await

        const response = await axios.get(`https://api.github.com/${username}`)

**Obs: Todas as funções do axios retorna promises**

**Código por completo:**

```
import axios from 'axios';

class Api {
    static async getUserInfo(username) {
        const response = await axios.get(`https://api.github.com/users/${username}`);
        console.log( response );
    }
}

Api.getUserInfo('matheusousasantos');
```

Será retornado meu usuário do github

### Tratando o erro
Podemos colocar dentro de um try/catch
```
import axios from 'axios';

class Api {
    static async getUserInfo(username) {

        try{

            const response = await axios.get(`https://api.github.com/users/${username}`);
            console.log( response );
        } catch( err ) {
            console.warn('Erro na API')
        }
    }
}

Api.getUserInfo('matheusousasantos');
```


We import `curl/curl.h` in https://github.com/scoutapp/scout-apm-php-ext/commit/8e2cd7bddfa00a2a820d02088c4ece04adfe9e5b#diff-5749b8e5e5cba1cfc955a592fddeae54R11

I found that even if PHP was built with curl support, the headers (e.g. package `libcurl4-openssl-dev` on Ubuntu) may be missing on the system (e.g. in cases where pre-built binaries are used like deb.sury.org, and I suppose your collection too on Fedora/etc.) which means compilation will fail.

So there is two facets to consider:

 - Whether PHP was built with cURL support (which I suppose affects `HAVE_CURL`)
 - Whether `curl/curl.h` exists on the system

Scout's preference was to have this optional (i.e. if the curl bit can't compile, then don't override the curl functions), and this was the method of detecting cURL I found in `php-src`, so figured it was OK:

https://github.com/php/php-src/blob/359a78b16c753b2e410b2cc5c30635619f4f1cb3/ext/curl/config.m4#L66-L73

I'm open to better suggestions, I'm not too familiar with the autoconf file, hence why I more or less copy/pasta this from cURL...


IBM Cloud [toolchain](https://cloud.ibm.com/devops/toolchains/ad452149-0e27-481e-889e-e26047d9198b?env_id=ibm%3Ayp%3Aeu-de "awesome-mixin"): [Delivery Pipeline](https://cloud.ibm.com/devops/pipelines/c6d6f93d-33bf-4235-bb17-fc701b2690c0 "awesome-mixin") deployed [awesome-mixin](https://github.com/cerasela-iordan/awesome-mixin/releases/tag/deploy-ibm-yp-eu-gb-flutterbyez-gmail.com-dev-20191126-101951 "deploy-ibm-yp-eu-gb-flutterbyez-gmail.com-dev-20191126-101951") to [dev](https://console.bluemix.net/apps/ec5ea3dc-d819-4e64-80b5-0b3ce7b52c3a?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:flutterbyez@gmail.com:dev"), including this commit


nacl.js


Looks Good


This causes infinite loop
#7


FYI These changes do not seem to be in the latest conda [build](https://anaconda.org/bioconda/krakenuniq)


@CompuIves anyclue why integration tests broke 🤔


Yes, I usually use a GUI for git/github, but this time I dived into the terminal.

fixed now!


e.g. from the report in #53:

```
scout_curl_wrapper.c:8:10: fatal error: curl/curl.h: No such file or directory
```

In that case, PHP was compiled with curl support, but the headers were missing from the system.


Successfully deployed to following URLs:

* https://next-sga-lkahz9vs0.now.sh
* https://sgagymfem.com
* https://www.sgagymfem.com
* https://sgagymfem.fr
* https://next-sga.aureltrouble.now.sh
* https://next-sga-git-master.aureltrouble.now.sh


Можно просто `.to_a`
`(10..100).step(5).to_a`


Successfully deployed to following URLs:

* https://alice-c9vvqnr6u.now.sh
* https://alice-rosy-three.now.sh
* https://alice.ydjin3.now.sh
* https://alice-git-master.ydjin3.now.sh


+/- 100 semitones? If a limit, it's rather be 127, the whole possible range, or +/- 12 +/- X octaves?


Improved in b8a9f2f228c5c706b7524b09


hai how are you


[R/clock_model_to_xml_prior_distr.R:14:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/clock_model_to_xml_prior_distr.R#L14) *warning:* **no visible global function definition for ‘rln_clock_model_to_xml_mean_rate_prior’**
```r
      text <- c(text, rln_clock_model_to_xml_mean_rate_prior(clock_model)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:32:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/clock_models_to_xml_state.R#L32) *warning:* **no visible global function definition for ‘clock_model_to_xml_state’**
```r
    line_to_remove <- clock_model_to_xml_state(clock_models[[1]]) # nolint
                      ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:9:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_distr.R#L9) *warning:* **no visible global function definition for ‘tree_priors_to_xml_prior_distr’**
```r
  text <- c(text, tree_priors_to_xml_prior_distr(tree_priors)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:10:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_distr.R#L10) *warning:* **no visible global function definition for ‘gamma_site_models_to_xml_prior_distr’**
```r
  text <- c(text, gamma_site_models_to_xml_prior_distr(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:11:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_distr.R#L11) *warning:* **no visible global function definition for ‘site_models_to_xml_prior_distr’**
```r
  text <- c(text, site_models_to_xml_prior_distr(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:27:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_operators.R#L27) *warning:* **no visible global function definition for ‘site_models_to_xml_operators’**
```r
  text <- c(text, site_models_to_xml_operators(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:23:11:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_run.R#L23) *warning:* **no visible global function definition for ‘mcmc_to_xml_run’**
```r
  text <- mcmc_to_xml_run(mcmc) # nolint beautier function
          ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:24:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_state.R#L24) *warning:* **no visible global function definition for ‘site_models_to_xml_state’**
```r
  text <- c(text, site_models_to_xml_state(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:33:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_state.R#L33) *warning:* **no visible global function definition for ‘tree_priors_to_xml_state’**
```r
  text <- c(text, tree_priors_to_xml_state(tree_priors)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_clock_models_from_names.R:5:26:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_clock_models_from_names.R#L5) *warning:* **no visible global function definition for ‘create_clock_model_from_name’**
```r
    clock_models[[i]] <- create_clock_model_from_name(clock_model_name) # nolint beautier function
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc_nested_sampling.R:41:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_mcmc_nested_sampling.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
#' @aliases create_ns_mcmc create_nested_sampling_mcmc create_mcmc_nested_sampling
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc_nested_sampling.R:42:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_mcmc_nested_sampling.R#L42) *style:* **Lines should not be more than 80 characters.**
```r
#' @export create_ns_mcmc create_nested_sampling_mcmc create_mcmc_nested_sampling
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_site_models_from_names.R:5:25:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_site_models_from_names.R#L5) *warning:* **no visible global function definition for ‘create_site_model_from_name’**
```r
    site_models[[i]] <- create_site_model_from_name(site_model_name) # nolint beautier function
                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_tracelog_xml.R:17:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_tracelog_xml.R#L17) *warning:* **no visible global function definition for ‘tree_models_to_xml_tracelog’**
```r
  text <- c(text, tree_models_to_xml_tracelog(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_tracelog_xml.R:32:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_tracelog_xml.R#L32) *warning:* **no visible global function definition for ‘tree_priors_to_xml_tracelog’**
```r
  text <- c(text, tree_priors_to_xml_tracelog(tree_priors)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/extract_xml_operators_from_lines.R:13:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/extract_xml_operators_from_lines.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
  last_line <- beautier::find_last_regex_line(lines, "(<operator id=\")|(</operator>)")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/extract_xml_section_from_lines.R:7:12:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/extract_xml_section_from_lines.R#L7) *warning:* **no visible global function definition for ‘extract_xml_operators_from_lines’**
```r
    return(extract_xml_operators_from_lines(lines)) # nolint beautier function
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/find_last_xml_closing_tag_line.R:6:3:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/find_last_xml_closing_tag_line.R#L6) *warning:* **no visible global function definition for ‘find_last_regex_line’**
```r
  find_last_regex_line(lines, paste0("</", section, ">")) # nolint beautier function
  ^~~~~~~~~~~~~~~~~~~~
```
[R/get_alignment_id.R:5:9:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/get_alignment_id.R#L5) *warning:* **no visible global function definition for ‘get_file_base_sans_ext’**
```r
  id <- get_file_base_sans_ext(fasta_filename) # nolint beautier function
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/get_alignment_id.R:9:3:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/get_alignment_id.R#L9) *warning:* **no visible global function definition for ‘check_alignment_id’**
```r
  check_alignment_id(id)
  ^~~~~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:11:12:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/has_xml_opening_tag.R#L11) *warning:* **no visible global function definition for ‘get_xml_opening_tag’**
```r
    tag <- get_xml_opening_tag(lines) # nolint
           ^~~~~~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:14:24:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/has_xml_opening_tag.R#L14) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !beautier::is_one_na(find_first_xml_opening_tag_line(lines, section))
                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:10:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_clock_models.R#L10) *warning:* **no visible global function definition for ‘get_alignment_ids_from_fasta_filenames’**
```r
  ids <- get_alignment_ids_from_fasta_filenames(fasta_filenames) # nolint beautier function
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:13:26:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_clock_models.R#L13) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr) # nolint beautier function
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:20:26:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_clock_models.R#L20) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr) # nolint beautier function
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:9:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_distr.R#L9) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
init_distr <- function(
^
```
[R/init_inference_model.R:39:22:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_inference_model.R#L39) *warning:* **no visible global function definition for ‘init_mrca_prior’**
```r
  inference_model <- init_mrca_prior(input_filename, inference_model)
                     ^~~~~~~~~~~~~~~
```
[R/init_mrca_prior.R:8:50:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_mrca_prior.R#L8) *warning:* **no visible global function definition for ‘get_alignment_id’**
```r
      inference_model$mrca_prior$alignment_id <- get_alignment_id(input_filename) # nolint beautier function
                                                 ^~~~~~~~~~~~~~~~
```
[R/init_mrca_prior.R:11:48:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_mrca_prior.R#L11) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
      inference_model$mrca_prior$taxa_names <- get_taxa_names(input_filename) # nolint beautier function
                                               ^~~~~~~~~~~~~~
```
[R/init_site_models.R:44:28:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L44) *warning:* **no visible global function definition for ‘get_site_model_n_params’**
```r
    param_id <- param_id + get_site_model_n_params(site_model) # nolint beautier function
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:198:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L198) *style:* **Lines should not be more than 80 characters.**
```r
  testit::assert(beautier::is_init_gamma_site_model(gtr_site_model$gamma_site_model))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:220:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L220) *style:* **Lines should not be more than 80 characters.**
```r
  if (!beautier::is_one_na(hky_site_model$gamma_site_model$gamma_shape_prior_distr)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L299) *style:* **Lines should not be more than 80 characters.**
```r
  testit::assert(beautier::is_init_gamma_site_model(jc69_site_model$gamma_site_model))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:327:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L327) *style:* **Lines should not be more than 80 characters.**
```r
    !beautier::is_one_na(tn93_site_model$gamma_site_model$gamma_shape_prior_distr)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/interspace.R:6:11:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/interspace.R#L6) *warning:* **no visible global function definition for ‘count_trailing_spaces’**
```r
  nsni <- count_trailing_spaces(lines[1]) # nolint beautier function
          ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:2:13:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_clock_model_name.R#L2) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names() # nolint beautier function
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_default_mcmc.R:2:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_default_mcmc.R#L2) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE) # nolint beautier function
       ^~~~~~~
```
[R/is_default_mcmc.R:3:39:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_default_mcmc.R#L3) *warning:* **no visible global function definition for ‘create_mcmc’**
```r
  length(names(mcmc)) == length(names(create_mcmc()))
                                      ^~~~~~~~~~~
```
[R/is_distr.R:37:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_distr.R#L37) *style:* **functions should have cyclomatic complexity of less than 15, this has 21.**
```r
is_distr <- function(
^
```
[R/is_freq_equilibrium_name.R:4:13:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_freq_equilibrium_name.R#L4) *warning:* **no visible global function definition for ‘get_freq_equilibrium_names’**
```r
  name %in% get_freq_equilibrium_names() # nolint beautier function
            ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_id.R:4:32:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_id.R#L4) *warning:* **no visible global function definition for ‘is_one_int’**
```r
  assertive::is_a_string(x) || is_one_int(x) # nolint beautier function
                               ^~~~~~~~~~
```
[R/is_init_distr.R:26:20:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_init_distr.R#L26) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(x))
                   ^~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:36:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_init_site_model.R#L36) *style:* **functions should have cyclomatic complexity of less than 15, this has 27.**
```r
is_init_gtr_site_model <- function(
^
```
[R/is_mrca_align_id_in_fasta.R:6:9:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_mrca_align_id_in_fasta.R#L6) *warning:* **no visible global function definition for ‘get_alignment_id’**
```r
  id <- get_alignment_id(fasta_filename)
        ^~~~~~~~~~~~~~~~
```
[R/is_mrca_align_ids_in_fastas.R:6:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_mrca_align_ids_in_fastas.R#L6) *warning:* **no visible global function definition for ‘get_alignment_ids_from_fasta_filenames’**
```r
  ids <- get_alignment_ids_from_fasta_filenames(fasta_filenames)
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:8:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L8) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$kappa_prior_distr)) return(FALSE) # nolint beautier function
       ^~~~~~~~
```
[R/is_site_model.R:10:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L10) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:18:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L18) *warning:* **no visible global function definition for ‘is_distr’**
```r
    if (!is_distr(expected_distr)) return(FALSE) # nolint beautier function
         ^~~~~~~~
```
[R/is_site_model.R:24:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L24) *warning:* **no visible global function definition for ‘is_param’**
```r
    if (!is_param(expected_param)) return(FALSE) # nolint beautier function
         ^~~~~~~~
```
[R/is_site_model.R:27:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L27) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:55:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L55) *style:* **functions should have cyclomatic complexity of less than 15, this has 22.**
```r
is_gtr_site_model <- function(
^
```
[R/is_site_model.R:171:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L171) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
is_tn93_site_model <- function(
^
```
[R/is_tree_prior_name.R:2:13:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_tree_prior_name.R#L2) *warning:* **no visible global function definition for ‘get_tree_prior_names’**
```r
  name %in% get_tree_prior_names() # nolint beautier function
            ^~~~~~~~~~~~~~~~~~~~
```
[R/is_tree_prior.R:5:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_tree_prior.R#L5) *warning:* **no visible global function definition for ‘is_tree_prior_name’**
```r
  if (!is_tree_prior_name(x$name)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:3:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L3) *warning:* **no visible global function definition for ‘has_xml_opening_tag’**
```r
  if (!has_xml_opening_tag(text)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:4:7:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L4) *warning:* **no visible global function definition for ‘has_xml_short_closing_tag’**
```r
  if (has_xml_short_closing_tag(text)) return(TRUE) # nolint beautier function
      ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:5:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L5) *warning:* **no visible global function definition for ‘get_xml_opening_tag’**
```r
  opening_tag <- get_xml_opening_tag(text) # nolint beautier function
                 ^~~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:6:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L6) *warning:* **no visible global function definition for ‘get_xml_closing_tag’**
```r
  closing_tag <- get_xml_closing_tag(text) # nolint beautier function
                 ^~~~~~~~~~~~~~~~~~~
```
[R/mcmc_to_xml_run.R:47:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/mcmc_to_xml_run.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
    xml <- paste0(xml, " numInitializationAttempts=\"", mcmc$n_init_attempts, "\"")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mrca_prior_to_xml_lh_distr.R:6:34:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/mrca_prior_to_xml_lh_distr.R#L6) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (length(mrca_prior) == 1 && is_one_na(mrca_prior)) return(NULL) # nolint beautier function
                                 ^~~~~~~~~
```
[R/mrca_priors_to_xml_state.R:6:35:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/mrca_priors_to_xml_state.R#L6) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (length(mrca_priors) == 1 && is_one_na(mrca_priors)) return(NULL) # nolint beautier function
                                  ^~~~~~~~~
```
[R/parameter_to_xml.R:13:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/parameter_to_xml.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 20.**
```r
parameter_to_xml <- function(
^
```
[R/site_model_to_xml_state.R:22:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L22) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$rate_ac_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_state.R:25:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L25) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$rate_ag_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_state.R:47:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L47) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$kappa_1_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_state.R:51:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L51) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$kappa_2_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_subst_model.R:6:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_subst_model.R#L6) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/site_model_to_xml_subst_model.R:7:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_subst_model.R#L7) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/site_models_to_xml_operators.R:4:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_models_to_xml_operators.R#L4) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models)) # nolint beautier function
                 ^~~~~~~~~~~~~~~
```
[R/site_models_to_xml_tracelog.R:6:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_models_to_xml_tracelog.R#L6) *warning:* **no visible global function definition for ‘site_model_to_xml_tracelog’**
```r
    text <- c(text, site_model_to_xml_tracelog(site_model)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_operators.R:10:22:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_operators.R#L10) *warning:* **no visible global function definition for ‘get_operator_id_pre’**
```r
  operator_id_pre <- get_operator_id_pre(tree_prior) # nolint beautier function
                     ^~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:7:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L7) *warning:* **no visible global function definition for ‘bd_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, bd_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:9:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘cbs_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, cbs_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:11:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘ccp_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, ccp_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:13:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L13) *warning:* **no visible global function definition for ‘cep_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, cep_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:16:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L16) *warning:* **no visible global function definition for ‘yule_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, yule_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_priors_to_xml_distr.R:8:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_priors_to_xml_distr.R#L8) *warning:* **no visible global function definition for ‘tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_priors_to_xml_operators.R:6:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_priors_to_xml_operators.R#L6) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors)) # nolint beautier function
                 ^~~~~~~~~~~~~~~
```
[tests/testthat/test-are_equal_mcmcs.R:57:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-are_equal_mcmcs.R#L57) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-check_file_and_model_agree.R:16:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-check_file_and_model_agree.R#L16) *style:* **Use <-, not =, for assignment.**
```r
  inference_model = create_inference_model(
                  ^
```
[tests/testthat/test-check_file_and_model_agree.R:35:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-check_file_and_model_agree.R#L35) *style:* **Use <-, not =, for assignment.**
```r
  inference_model = create_inference_model(
                  ^
```
[tests/testthat/test-create_treelog_xml.R:15:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-create_treelog_xml.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
    "    <log id=\"TreeWithMetaDataLogger.t:test_output_0\" spec=\"beast.evolution.tree.TreeWithMetaDataLogger\" tree=\"@Tree.t:test_output_0\"/>",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


div.mw-warning-with-logexcerpt is not red, again changing fundamental colors is not OK.


ez itt nem ábécé sorrendben van


mi ez a kommentecske


@musmanmalik
i have edit in comment


@arslan-asghar
plz


Successfully deployed to following URLs:

* https://react-notes-lubq0d8te.now.sh
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Try to solve this one without `break` too.


ebből tényleg kell minden?


#31 / 51 - 40.40 pts


ennyi elemnél asszem ezt már új sorba kell kezdeni tidy szerint


What about to add the bazel command as well ?


I see what you were going for, but you don't need to do this since in Rust everything is an expression, including if blocks :). You can rewrite this like:

```Rust
    let sleep_in_milliseconds = if args.len() >= 4 {
        std::env::args().nth(3).unwrap().parse::<u64>().expect("Invalid sleep duration specified")
    } else {
        16
    };
```

Or if you want to be a nerd:
```
    let sleep_in_milliseconds = std::env::args()
        .nth(3)
        .unwrap_or("16".to_string())
        .parse::<u64>()
        .expect("Invalid sleep duration specified");
```


The indentation is really bad.


1.리사이클러뷰가 격자형태로 보이고 각 아이템을 클릭했을때 동작한다


AGain, indentation


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Why do you need a separate x and n?


ezek itt pontosan milyen logikai sorrend alaján vannak rendezve?


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w


Hey Mark. I'd recommend using a named constant rather than 5 or 6, and define it at the top of your class. That way you can use it anywhere or even inject it in as configuration.

Great to see you on github btw :)


What about to add "About tags: " to the title or something to be obvious that is about the bazel tags?


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indeed


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[R/check_pir_out.R:17:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/check_pir_out.R#L17) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
check_pir_out <- function(
^
```
[R/create_alignment_with_std_site_model.R:5:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/create_alignment_with_std_site_model.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
create_alignment_with_std_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_all_experiments.R:24:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/create_all_experiments.R#L24) *style:* **functions should have cyclomatic complexity of less than 15, this has 30.**
```r
create_all_experiments <- function(
^
```
[R/create_copy_twin_tree_from_true_fun.R:21:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/create_copy_twin_tree_from_true_fun.R#L21) *style:* **Variable and function names should not be longer than 30 characters.**
```r
create_copy_twin_tree_from_true_fun <- function() {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/est_evidences.R:35:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/est_evidences.R#L35) *style:* **functions should have cyclomatic complexity of less than 15, this has 20.**
```r
est_evidences <- function(
^
```
[R/get_alignment_sequences.R:5:3:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/get_alignment_sequences.R#L5) *warning:* **no visible global function definition for ‘check_alignment’**
```r
  check_alignment(alignment)
  ^~~~~~~~~~~~~~~
```
[R/get_sim_true_alignment_with_linked_node_sub_site_model_fun.R:23:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/get_sim_true_alignment_with_linked_node_sub_site_model_fun.R#L23) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_sim_true_alignment_with_linked_node_sub_site_model_fun <-
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_sim_true_alignment_with_std_site_model_fun.R:21:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/get_sim_true_alignment_with_std_site_model_fun.R#L21) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_sim_true_alignment_with_std_site_model_fun <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_sim_true_alignment_with_unlinked_node_sub_site_model_fun.R:20:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/get_sim_true_alignment_with_unlinked_node_sub_site_model_fun.R#L20) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_sim_true_alignment_with_unlinked_node_sub_site_model_fun <-
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_sim_twin_alignment_with_same_n_mutation_fun.R:29:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/get_sim_twin_alignment_with_same_n_mutation_fun.R#L29) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_sim_twin_alignment_with_same_n_mutation_fun <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/get_sim_twin_alignment_with_std_site_model_fun.R:30:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/get_sim_twin_alignment_with_std_site_model_fun.R#L30) *style:* **Variable and function names should not be longer than 30 characters.**
```r
get_sim_twin_alignment_with_std_site_model_fun <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/select_candidate_evidences.R:25:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/select_candidate_evidences.R#L25) *style:* **functions should have cyclomatic complexity of less than 15, this has 20.**
```r
select_candidate_evidences <- function(
^
```
[R/sim_alignment_with_std_site_model.R:15:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_alignment_with_std_site_model.R#L15) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_alignment_with_std_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_true_alignment_with_linked_node_sub_site_model.R:12:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_true_alignment_with_linked_node_sub_site_model.R#L12) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_true_alignment_with_linked_node_sub_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_true_alignment_with_std_site_model.R:21:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_true_alignment_with_std_site_model.R#L21) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_true_alignment_with_std_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_true_alignment_with_unlinked_node_sub_site_model.R:13:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_true_alignment_with_unlinked_node_sub_site_model.R#L13) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_true_alignment_with_unlinked_node_sub_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_twin_alignment_with_linked_node_sub_site_model.R:11:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_twin_alignment_with_linked_node_sub_site_model.R#L11) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_twin_alignment_with_linked_node_sub_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_twin_alignment_with_same_n_mutation.R:30:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_twin_alignment_with_same_n_mutation.R#L30) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_twin_alignment_with_same_n_mutation <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_twin_alignment_with_std_site_model_raw.R:5:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_twin_alignment_with_std_site_model_raw.R#L5) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_twin_alignment_with_std_site_model_raw <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_twin_alignment_with_std_site_model.R:29:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_twin_alignment_with_std_site_model.R#L29) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_twin_alignment_with_std_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_twin_alignment_with_unlinked_node_sub_site_model.R:11:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/sim_twin_alignment_with_unlinked_node_sub_site_model.R#L11) *style:* **Variable and function names should not be longer than 30 characters.**
```r
sim_twin_alignment_with_unlinked_node_sub_site_model <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/update_pirouette.R:4:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/update_pirouette.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
  devtools::install_github("richelbilderbeek/babette", quiet = TRUE, dependencies = TRUE, upgrade = "always")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/update_pirouette.R:5:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/R/update_pirouette.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
  devtools::install_github("richelbilderbeek/mcbette", quiet = TRUE, dependencies = TRUE, upgrade = "always")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_experiments_filenames.R:38:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/tests/testthat/test-get_experiments_filenames.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
    expect_true(experiment$inference_model$mcmc$tracelog$filename %in% filenames)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_pir_params_filenames.R:47:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/tests/testthat/test-get_pir_params_filenames.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
    expect_true(experiment$inference_model$mcmc$tracelog$filename %in% filenames)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_pir_params_filenames.R:71:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/tests/testthat/test-get_pir_params_filenames.R#L71) *style:* **Lines should not be more than 80 characters.**
```r
    expect_true(experiment$inference_model$mcmc$tracelog$filename %in% filenames)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_pir_params_filenames.R:114:1:](https://github.com/richelbilderbeek/pirouette/blob/1d0a2c8d96882c6ce25d7c4f50f9859721a14f8e/tests/testthat/test-get_pir_params_filenames.R#L114) *style:* **Lines should not be more than 80 characters.**
```r
    expect_true(experiment$inference_model$mcmc$tracelog$filename %in% filenames)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


vatszdisz


Depends on what you're trying to do:

* If your struct "owns" the data and you know the compile time size, use an array (this will become a lot nicer soon with const generics so you can generalize over size).
* If your struct "owns" the data and you don't know the compile time size, vector.
* If your struct doesn't own the data, slice. It doesn't really matter if it lives elsewhere as an array or a vector, you use slices when you want a "view" over something that lives elsewhere. This comes at the cost of making lifetimes explicit and thus a bit more annoying.

Having &mut slices is a bit stranger however, since during their lifetime they preclude any access to the variable. That sounds like you probably wanted to own it, and hence have a vector.


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It's not bad, but I think this is happening at the wrong layer. I'll bring this up again when I talk about the "initialize" method of your trait :)


ok, this is another place, where please rewrite this with do-while


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[R/clock_model_to_xml_prior_distr.R:14:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/clock_model_to_xml_prior_distr.R#L14) *warning:* **no visible global function definition for ‘rln_clock_model_to_xml_mean_rate_prior’**
```r
      text <- c(text, rln_clock_model_to_xml_mean_rate_prior(clock_model)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/clock_models_to_xml_state.R:32:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/clock_models_to_xml_state.R#L32) *warning:* **no visible global function definition for ‘clock_model_to_xml_state’**
```r
    line_to_remove <- clock_model_to_xml_state(clock_models[[1]]) # nolint
                      ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:9:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_distr.R#L9) *warning:* **no visible global function definition for ‘tree_priors_to_xml_prior_distr’**
```r
  text <- c(text, tree_priors_to_xml_prior_distr(tree_priors)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:10:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_distr.R#L10) *warning:* **no visible global function definition for ‘gamma_site_models_to_xml_prior_distr’**
```r
  text <- c(text, gamma_site_models_to_xml_prior_distr(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_distr.R:11:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_distr.R#L11) *warning:* **no visible global function definition for ‘site_models_to_xml_prior_distr’**
```r
  text <- c(text, site_models_to_xml_prior_distr(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_operators.R:27:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_operators.R#L27) *warning:* **no visible global function definition for ‘site_models_to_xml_operators’**
```r
  text <- c(text, site_models_to_xml_operators(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_run.R:23:11:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_run.R#L23) *warning:* **no visible global function definition for ‘mcmc_to_xml_run’**
```r
  text <- mcmc_to_xml_run(mcmc) # nolint beautier function
          ^~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:24:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_state.R#L24) *warning:* **no visible global function definition for ‘site_models_to_xml_state’**
```r
  text <- c(text, site_models_to_xml_state(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_beast2_input_state.R:33:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_beast2_input_state.R#L33) *warning:* **no visible global function definition for ‘tree_priors_to_xml_state’**
```r
  text <- c(text, tree_priors_to_xml_state(tree_priors)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_clock_models_from_names.R:5:26:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_clock_models_from_names.R#L5) *warning:* **no visible global function definition for ‘create_clock_model_from_name’**
```r
    clock_models[[i]] <- create_clock_model_from_name(clock_model_name) # nolint beautier function
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc_nested_sampling.R:41:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_mcmc_nested_sampling.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
#' @aliases create_ns_mcmc create_nested_sampling_mcmc create_mcmc_nested_sampling
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_mcmc_nested_sampling.R:42:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_mcmc_nested_sampling.R#L42) *style:* **Lines should not be more than 80 characters.**
```r
#' @export create_ns_mcmc create_nested_sampling_mcmc create_mcmc_nested_sampling
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_site_models_from_names.R:5:25:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_site_models_from_names.R#L5) *warning:* **no visible global function definition for ‘create_site_model_from_name’**
```r
    site_models[[i]] <- create_site_model_from_name(site_model_name) # nolint beautier function
                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_tracelog_xml.R:17:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_tracelog_xml.R#L17) *warning:* **no visible global function definition for ‘tree_models_to_xml_tracelog’**
```r
  text <- c(text, tree_models_to_xml_tracelog(site_models)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_tracelog_xml.R:32:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/create_tracelog_xml.R#L32) *warning:* **no visible global function definition for ‘tree_priors_to_xml_tracelog’**
```r
  text <- c(text, tree_priors_to_xml_tracelog(tree_priors)) # nolint beautier function
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/extract_xml_operators_from_lines.R:13:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/extract_xml_operators_from_lines.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
  last_line <- beautier::find_last_regex_line(lines, "(<operator id=\")|(</operator>)")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/extract_xml_section_from_lines.R:7:12:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/extract_xml_section_from_lines.R#L7) *warning:* **no visible global function definition for ‘extract_xml_operators_from_lines’**
```r
    return(extract_xml_operators_from_lines(lines)) # nolint beautier function
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/find_last_xml_closing_tag_line.R:6:3:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/find_last_xml_closing_tag_line.R#L6) *warning:* **no visible global function definition for ‘find_last_regex_line’**
```r
  find_last_regex_line(lines, paste0("</", section, ">")) # nolint beautier function
  ^~~~~~~~~~~~~~~~~~~~
```
[R/get_alignment_id.R:5:9:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/get_alignment_id.R#L5) *warning:* **no visible global function definition for ‘get_file_base_sans_ext’**
```r
  id <- get_file_base_sans_ext(fasta_filename) # nolint beautier function
        ^~~~~~~~~~~~~~~~~~~~~~
```
[R/get_alignment_id.R:9:3:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/get_alignment_id.R#L9) *warning:* **no visible global function definition for ‘check_alignment_id’**
```r
  check_alignment_id(id)
  ^~~~~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:11:12:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/has_xml_opening_tag.R#L11) *warning:* **no visible global function definition for ‘get_xml_opening_tag’**
```r
    tag <- get_xml_opening_tag(lines) # nolint
           ^~~~~~~~~~~~~~~~~~~
```
[R/has_xml_opening_tag.R:14:24:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/has_xml_opening_tag.R#L14) *warning:* **no visible global function definition for ‘find_first_xml_opening_tag_line’**
```r
  !beautier::is_one_na(find_first_xml_opening_tag_line(lines, section))
                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:10:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_clock_models.R#L10) *warning:* **no visible global function definition for ‘get_alignment_ids_from_fasta_filenames’**
```r
  ids <- get_alignment_ids_from_fasta_filenames(fasta_filenames) # nolint beautier function
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:13:26:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_clock_models.R#L13) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(ucldstdev_distr) # nolint beautier function
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_clock_models.R:20:26:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_clock_models.R#L20) *warning:* **no visible global function definition for ‘get_distr_n_params’**
```r
  param_id <- param_id + get_distr_n_params(mean_rate_prior_distr) # nolint beautier function
                         ^~~~~~~~~~~~~~~~~~
```
[R/init_distr.R:9:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_distr.R#L9) *style:* **functions should have cyclomatic complexity of less than 15, this has 25.**
```r
init_distr <- function(
^
```
[R/init_inference_model.R:39:22:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_inference_model.R#L39) *warning:* **no visible global function definition for ‘init_mrca_prior’**
```r
  inference_model <- init_mrca_prior(input_filename, inference_model)
                     ^~~~~~~~~~~~~~~
```
[R/init_mrca_prior.R:8:50:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_mrca_prior.R#L8) *warning:* **no visible global function definition for ‘get_alignment_id’**
```r
      inference_model$mrca_prior$alignment_id <- get_alignment_id(input_filename) # nolint beautier function
                                                 ^~~~~~~~~~~~~~~~
```
[R/init_mrca_prior.R:11:48:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_mrca_prior.R#L11) *warning:* **no visible global function definition for ‘get_taxa_names’**
```r
      inference_model$mrca_prior$taxa_names <- get_taxa_names(input_filename) # nolint beautier function
                                               ^~~~~~~~~~~~~~
```
[R/init_site_models.R:44:28:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L44) *warning:* **no visible global function definition for ‘get_site_model_n_params’**
```r
    param_id <- param_id + get_site_model_n_params(site_model) # nolint beautier function
                           ^~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:198:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L198) *style:* **Lines should not be more than 80 characters.**
```r
  testit::assert(beautier::is_init_gamma_site_model(gtr_site_model$gamma_site_model))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:220:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L220) *style:* **Lines should not be more than 80 characters.**
```r
  if (!beautier::is_one_na(hky_site_model$gamma_site_model$gamma_shape_prior_distr)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:299:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L299) *style:* **Lines should not be more than 80 characters.**
```r
  testit::assert(beautier::is_init_gamma_site_model(jc69_site_model$gamma_site_model))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/init_site_models.R:327:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/init_site_models.R#L327) *style:* **Lines should not be more than 80 characters.**
```r
    !beautier::is_one_na(tn93_site_model$gamma_site_model$gamma_shape_prior_distr)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/interspace.R:6:11:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/interspace.R#L6) *warning:* **no visible global function definition for ‘count_trailing_spaces’**
```r
  nsni <- count_trailing_spaces(lines[1]) # nolint beautier function
          ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_clock_model_name.R:2:13:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_clock_model_name.R#L2) *warning:* **no visible global function definition for ‘get_clock_model_names’**
```r
  name %in% get_clock_model_names() # nolint beautier function
            ^~~~~~~~~~~~~~~~~~~~~
```
[R/is_default_mcmc.R:2:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_default_mcmc.R#L2) *warning:* **no visible global function definition for ‘is_mcmc’**
```r
  if (!is_mcmc(mcmc)) return(FALSE) # nolint beautier function
       ^~~~~~~
```
[R/is_default_mcmc.R:3:39:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_default_mcmc.R#L3) *warning:* **no visible global function definition for ‘create_mcmc’**
```r
  length(names(mcmc)) == length(names(create_mcmc()))
                                      ^~~~~~~~~~~
```
[R/is_distr.R:37:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_distr.R#L37) *style:* **functions should have cyclomatic complexity of less than 15, this has 21.**
```r
is_distr <- function(
^
```
[R/is_freq_equilibrium_name.R:4:13:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_freq_equilibrium_name.R#L4) *warning:* **no visible global function definition for ‘get_freq_equilibrium_names’**
```r
  name %in% get_freq_equilibrium_names() # nolint beautier function
            ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_id.R:4:32:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_id.R#L4) *warning:* **no visible global function definition for ‘is_one_int’**
```r
  assertive::is_a_string(x) || is_one_int(x) # nolint beautier function
                               ^~~~~~~~~~
```
[R/is_init_distr.R:26:20:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_init_distr.R#L26) *warning:* **no visible global function definition for ‘is_uniform_distr’**
```r
    testit::assert(is_uniform_distr(x))
                   ^~~~~~~~~~~~~~~~
```
[R/is_init_site_model.R:36:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_init_site_model.R#L36) *style:* **functions should have cyclomatic complexity of less than 15, this has 27.**
```r
is_init_gtr_site_model <- function(
^
```
[R/is_mrca_align_id_in_fasta.R:6:9:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_mrca_align_id_in_fasta.R#L6) *warning:* **no visible global function definition for ‘get_alignment_id’**
```r
  id <- get_alignment_id(fasta_filename)
        ^~~~~~~~~~~~~~~~
```
[R/is_mrca_align_ids_in_fastas.R:6:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_mrca_align_ids_in_fastas.R#L6) *warning:* **no visible global function definition for ‘get_alignment_ids_from_fasta_filenames’**
```r
  ids <- get_alignment_ids_from_fasta_filenames(fasta_filenames)
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:8:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L8) *warning:* **no visible global function definition for ‘is_distr’**
```r
  if (!is_distr(x$kappa_prior_distr)) return(FALSE) # nolint beautier function
       ^~~~~~~~
```
[R/is_site_model.R:10:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L10) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:18:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L18) *warning:* **no visible global function definition for ‘is_distr’**
```r
    if (!is_distr(expected_distr)) return(FALSE) # nolint beautier function
         ^~~~~~~~
```
[R/is_site_model.R:24:10:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L24) *warning:* **no visible global function definition for ‘is_param’**
```r
    if (!is_param(expected_param)) return(FALSE) # nolint beautier function
         ^~~~~~~~
```
[R/is_site_model.R:27:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L27) *warning:* **no visible global function definition for ‘is_freq_equilibrium_name’**
```r
  if (!is_freq_equilibrium_name(x$freq_equilibrium)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_site_model.R:55:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L55) *style:* **functions should have cyclomatic complexity of less than 15, this has 22.**
```r
is_gtr_site_model <- function(
^
```
[R/is_site_model.R:171:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_site_model.R#L171) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
is_tn93_site_model <- function(
^
```
[R/is_tree_prior_name.R:2:13:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_tree_prior_name.R#L2) *warning:* **no visible global function definition for ‘get_tree_prior_names’**
```r
  name %in% get_tree_prior_names() # nolint beautier function
            ^~~~~~~~~~~~~~~~~~~~
```
[R/is_tree_prior.R:5:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_tree_prior.R#L5) *warning:* **no visible global function definition for ‘is_tree_prior_name’**
```r
  if (!is_tree_prior_name(x$name)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:3:8:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L3) *warning:* **no visible global function definition for ‘has_xml_opening_tag’**
```r
  if (!has_xml_opening_tag(text)) return(FALSE) # nolint beautier function
       ^~~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:4:7:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L4) *warning:* **no visible global function definition for ‘has_xml_short_closing_tag’**
```r
  if (has_xml_short_closing_tag(text)) return(TRUE) # nolint beautier function
      ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:5:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L5) *warning:* **no visible global function definition for ‘get_xml_opening_tag’**
```r
  opening_tag <- get_xml_opening_tag(text) # nolint beautier function
                 ^~~~~~~~~~~~~~~~~~~
```
[R/is_xml.R:6:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/is_xml.R#L6) *warning:* **no visible global function definition for ‘get_xml_closing_tag’**
```r
  closing_tag <- get_xml_closing_tag(text) # nolint beautier function
                 ^~~~~~~~~~~~~~~~~~~
```
[R/mcmc_to_xml_run.R:47:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/mcmc_to_xml_run.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
    xml <- paste0(xml, " numInitializationAttempts=\"", mcmc$n_init_attempts, "\"")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/mrca_prior_to_xml_lh_distr.R:6:34:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/mrca_prior_to_xml_lh_distr.R#L6) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (length(mrca_prior) == 1 && is_one_na(mrca_prior)) return(NULL) # nolint beautier function
                                 ^~~~~~~~~
```
[R/mrca_priors_to_xml_state.R:6:35:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/mrca_priors_to_xml_state.R#L6) *warning:* **no visible global function definition for ‘is_one_na’**
```r
  if (length(mrca_priors) == 1 && is_one_na(mrca_priors)) return(NULL) # nolint beautier function
                                  ^~~~~~~~~
```
[R/parameter_to_xml.R:13:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/parameter_to_xml.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 20.**
```r
parameter_to_xml <- function(
^
```
[R/site_model_to_xml_state.R:22:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L22) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$rate_ac_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_state.R:25:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L25) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$rate_ag_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_state.R:47:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L47) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$kappa_1_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_state.R:51:23:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_state.R#L51) *warning:* **no visible global function definition for ‘parameter_to_xml’**
```r
      text <- c(text, parameter_to_xml(site_model$kappa_2_param)) # nolint beautier function
                      ^~~~~~~~~~~~~~~~
```
[R/site_model_to_xml_subst_model.R:6:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_subst_model.R#L6) *warning:* **no visible global function definition for ‘is_id’**
```r
  testit::assert(is_id(id))
                 ^~~~~
```
[R/site_model_to_xml_subst_model.R:7:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_model_to_xml_subst_model.R#L7) *warning:* **no visible global function definition for ‘is_jc69_site_model’**
```r
  testit::assert(is_jc69_site_model(site_model))
                 ^~~~~~~~~~~~~~~~~~
```
[R/site_models_to_xml_operators.R:4:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_models_to_xml_operators.R#L4) *warning:* **no visible global function definition for ‘are_site_models’**
```r
  testit::assert(are_site_models(site_models)) # nolint beautier function
                 ^~~~~~~~~~~~~~~
```
[R/site_models_to_xml_tracelog.R:6:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/site_models_to_xml_tracelog.R#L6) *warning:* **no visible global function definition for ‘site_model_to_xml_tracelog’**
```r
    text <- c(text, site_model_to_xml_tracelog(site_model)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_operators.R:10:22:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_operators.R#L10) *warning:* **no visible global function definition for ‘get_operator_id_pre’**
```r
  operator_id_pre <- get_operator_id_pre(tree_prior) # nolint beautier function
                     ^~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:7:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L7) *warning:* **no visible global function definition for ‘bd_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, bd_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:9:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L9) *warning:* **no visible global function definition for ‘cbs_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, cbs_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:11:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L11) *warning:* **no visible global function definition for ‘ccp_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, ccp_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:13:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L13) *warning:* **no visible global function definition for ‘cep_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, cep_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_prior_to_xml_prior_distr.R:16:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_prior_to_xml_prior_distr.R#L16) *warning:* **no visible global function definition for ‘yule_tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, yule_tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_priors_to_xml_distr.R:8:21:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_priors_to_xml_distr.R#L8) *warning:* **no visible global function definition for ‘tree_prior_to_xml_prior_distr’**
```r
    text <- c(text, tree_prior_to_xml_prior_distr(tree_prior)) # nolint beautier function
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/tree_priors_to_xml_operators.R:6:18:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/R/tree_priors_to_xml_operators.R#L6) *warning:* **no visible global function definition for ‘are_tree_priors’**
```r
  testit::assert(are_tree_priors(tree_priors)) # nolint beautier function
                 ^~~~~~~~~~~~~~~
```
[tests/testthat/test-are_equal_mcmcs.R:57:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-are_equal_mcmcs.R#L57) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-check_file_and_model_agree.R:16:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-check_file_and_model_agree.R#L16) *style:* **Use <-, not =, for assignment.**
```r
  inference_model = create_inference_model(
                  ^
```
[tests/testthat/test-check_file_and_model_agree.R:35:19:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-check_file_and_model_agree.R#L35) *style:* **Use <-, not =, for assignment.**
```r
  inference_model = create_inference_model(
                  ^
```
[tests/testthat/test-create_treelog_xml.R:15:1:](https://github.com/ropensci/beautier/blob/00c527b2f6f10a89c2efb3f923258bb9644ce8f2/tests/testthat/test-create_treelog_xml.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
    "    <log id=\"TreeWithMetaDataLogger.t:test_output_0\" spec=\"beast.evolution.tree.TreeWithMetaDataLogger\" tree=\"@Tree.t:test_output_0\"/>",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


BTW, everything seems inconsistent.

You don't use the library, so don't have to check its symbol.
You only use one macro (CURLOPT_URL), so only need the header (using `curl-config  --cflags`)
You need to add the headers to the compiler PATH (again `curl-config  --cflags`)
And you still can have the libcurl header installed without the curl extension.

Using HAVE_CURL and DEPMOD seems definitively needed


老师，538-543行这里是什么意思？为什么nndk(i)要初始化多次？


revert


esetleg van ennél jobb cfg feltétel?


Please submit an issue with a self contained test case to reproduce the problem.


[R/check_pff_pir_params.R:9:3:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/R/check_pff_pir_params.R#L9) *warning:* **no visible global function definition for ‘check_pff_twinning_params’**
```r
  check_pff_twinning_params(pir_params$twinning_params) # nolint peregrine function
  ^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/check_pff_pir_params.R:10:3:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/R/check_pff_pir_params.R#L10) *warning:* **no visible global function definition for ‘check_pff_alignment_params’**
```r
  check_pff_alignment_params(pir_params$alignment_params) # nolint peregrine function
  ^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/check_pff_pir_params.R:11:3:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/R/check_pff_pir_params.R#L11) *warning:* **no visible global function definition for ‘check_pff_experiments’**
```r
  check_pff_experiments(pir_params$experiments) # nolint peregrine function
  ^~~~~~~~~~~~~~~~~~~~~
```
[R/create_pff_pir_params.R:28:21:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/R/create_pff_pir_params.R#L28) *warning:* **no visible global function definition for ‘to_pff_pir_params’**
```r
  pff_pir_params <- to_pff_pir_params(pir_params)
                    ^~~~~~~~~~~~~~~~~
```
[R/get_pff_tempfile.R:6:18:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/R/get_pff_tempfile.R#L6) *warning:* **no visible global function definition for ‘is_pff’**
```r
  testit::assert(is_pff(pff_tmpdir)) # nolint peregrine function
                 ^~~~~~
```
[tests/testthat/test-check_pff_experiment.R:23:1:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/tests/testthat/test-check_pff_experiment.R#L23) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-to_pff_experiments.R:29:1:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/tests/testthat/test-to_pff_experiments.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
  experiments[[2]]$inference_model$site_model <- beautier::create_gtr_site_model()
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-to_pff_experiments.R:43:1:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/tests/testthat/test-to_pff_experiments.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
  experiments[[2]]$inference_model$site_model <- beautier::create_gtr_site_model()
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-to_pff_experiments.R:44:1:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/tests/testthat/test-to_pff_experiments.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
  experiments[[3]]$inference_model$site_model <- beautier::create_tn93_site_model()
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-to_pff_experiments.R:59:1:](https://github.com/richelbilderbeek/peregrine/blob/b4de897cda0888942943397ce697d6c7be48a43c/tests/testthat/test-to_pff_experiments.R#L59) *style:* **Lines should not be more than 80 characters.**
```r
  experiments[[2]]$inference_model$site_model <- beautier::create_gtr_site_model()
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


You can, yeah :) you just need to make sure the concrete type "lives" in the place where you know what the concrete type is. I know that's confusing as hell, but if you instantiate your concrete (with known size) in main(), you can pass around "dyn" references to it to your whole system, which means there will be dynamic dispatch without heap.

However, often you want to pass around ownership of an object through its interface, which requires using the heap since its size is not known.


Deployment failed with the following error:

~~~
The chosen alias "pepninjas.now.sh" is already in use.
~~~


Deployment failed with the following error:

~~~
Could not find a secret by name "moviedb-api"
~~~


The workarounds and false positives can give an idea as to how the existing
implementation behaves.
It does appear that the rule expects the variables to be used or assigned
very close to where they're declared.

Checkstyle has a rule for that:

https://checkstyle.sourceforge.io/config_coding.html#VariableDeclarationUsageDistance

 The PMD rule  is particular if the variable is not referred to in all the
execution paths. Can that be configured? Would that be desirable?


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I came into an error called"cPickle.UnpicklingError: bad pickle data", I reference some examples on the Internet to solve the problem, but it didn't work for me... could you plz tell me how to figure this out? thank u a lot.


ha úgyis mindegyik egy IdentityHub, esetleg lehetne egy tömb amiben a platformon elérhető identityhubok vannak
persze csak ha később nincsenek másra is használva


abc


# Curso JavaScript ES6
## Módulo 04 - Aplicação com ES6+
## Aula 01 - Estrutura e estilos

### Desenvolver uma aplicação utilizando os conceitos das aulas anteriores

### Nessa aula vamos configurar o html da nossa aplicação


hm a create_adapter_id-t külön be kell húzni?
+ use crate sor előbbre


Brakuje zależności, np. nie ma @material-ui, react-spacer. Postaram się naprawić, ale zwróć na to uwagę w przyszłości @pmikstacki


attention


I've seen worse lol.

I like using the [https://doc.rust-lang.org/std/macro.include_bytes.html](include_bytes) macro, which just reads a file and dumps its content to an array. It plays nice with git and cargo.


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Happy to hear you fixed it!

Thanks for working on develop :+1:


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Okay, so I understand that you’d like me to implement the new find_key method in the western_scales branch?

JMM.

> Le 26 nov. 2019 à 08:44, Tracey <notifications@github.com> a écrit :
>
>
> (all the error cases we mentioned in this thread, oops. I still haven't implemented find_keys, or replaced the map_note_to_position method in the main parser. but we can get to that later. I think from what we have spoken, I feel you are more suited to handle find_keys)
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub, or unsubscribe.


Don't know what's the best, but dump and restore seems a good option to me.


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ha már ugyanaz a neve, én itt kiírnám a crate nevét is


You are using options.server both as file name and path, something goes wrong here, in the end if you pass path to options.server - it's not created, file without an extension is created instead.


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abc


yep :) typically people will write three kinds of tests:

* "Inline" tests like this, which are nice since they bypass visibility completely if you need that (gotta test dem private methods). Some people are opposed to this but they're weird.
* "Integration" tests, which isn't what we usually mean at BF... They mean a "test" module at crate level where the whole crate is tested end to end (this applies to libraries mostly)
* Documentation tests. There is a pretty neat feature where your docstrings (starting with "///") can have example code with assertions, and if these assertions don't hold, your docs won't generate.


Also options.server is not used for the prod server.js file, it's created in the root folder of the project for some reason


According to the model, the form consists of `name`, `age` and nested `passwordsForm`.
However, effectively the nested object is "flattened" inside the parent form, i.e. the state of the password and password-2 fields is kept inside the `FormState<RegistrationInput>`.

Looks like this impacts the reusability, imagine an example:
```
interface Inquiry {
  subject: string;
  contact: ContactInfo;
  backupContact: ContactInfo;
}
interface ContactInfo {
  name: string;
  phone: string;
}
```
With the current solution, we would need to declare the `name` and `phone` fields twice in order to be able to refer to them in the `RegistrationComponent`.

My vision is that the structure of the form should be preserved. Hopefully, this would also give us some more compile-type info. Example:
```
// current solution:
// no type hint that `field` even exists in `form`
export const getFieldValue = <A, B>(form: Form<A>, field: Form<B>): Option<Form<B>> => /* ... */
// we will only know in runtime if the field is there or not
const maybeName = getFieldValue(form, nameField);

// prospective (not sure if doable at all but this is just an idea):
type StructForm<A> = A extends object ? Form<A> & {
    props: {[K in keyof A]: Form<A[K]>;
} : never;

const primaryContactName = form.props.contact.props.name;   // maybe need some `map(f: StructForm<A>, key: keyof A)`
const backupContactName = form.props.backupContact.props.name;   // maybe need some `map(f: StructForm<A>, key: keyof A)`
```
// same should be possible for arrays
```

What do you think?


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需要， breath = [[]]


IBM Cloud [toolchain](https://cloud.ibm.com/devops/toolchains/2cef73e4-1589-4b6d-ad52-2bba05849746?env_id=ibm%3Ayp%3Aeu-gb "quando-feb24b"): [Delivery Pipeline](https://cloud.ibm.com/devops/pipelines/c7530d05-4a5f-4670-8c8f-edabfb8207a0 "quando-feb24b") deployed [quando](https://github.com/andrewfstratton/quando/releases/tag/deploy-ibm-yp-eu-gb-a.stratton-sheffield.ac.uk-dev-20191126-104257 "deploy-ibm-yp-eu-gb-a.stratton-sheffield.ac.uk-dev-20191126-104257") to [dev](https://console.bluemix.net/apps/0e3846af-b18d-4b6e-9456-d83a4afc53b2?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:a.stratton@sheffield.ac.uk:dev"), including this commit


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We have an undocumented standard emerging from the API that looks like this:

```json
{
  "error": "error.message.locale.key",
  "errorMessage": "This is the error message."
}
```

It's returned with `APIResponse::withJsonError()`.

We also have a Vue.js mix-in, `ajaxErrorCallback`, that will open a modal with an error message when this response is received. You would use it like this in a Vue component:

```
$.ajax({
  ...
  error(r) {
    if (/* watch for a known error */) {
      ...
    } else {
      this.ajaxErrorCallback(r);
    }
  }
})
```

This could probably be improved by looking at the HTTP status code, watching for a `500` and passing it that way. Might even be possible to extend at the jQuery side, in the same way that headers can be set to be sent with every request.


Will this only get called for `500` errors? I notice that the error handler receives a `$errno` arg, but that probably doesn't line up with an HTTP status code?


after putting padding removal after bandwidth estimation, i can have a correct BWE when simulcast is on. This bug may cause a low resolution of publisher when i enable the simulcast function at a Chrome v77+.
Could you describe the reason please? I'm so confused about this...


Ajout inutile je préferai le premier sans modification


Is it possible to have a cross-field validation, e.g. verify that the two passwords match?


using `this.__downloaded = this.__getFilesizeInBytes(this.__filePath);` could give you the wrong size when resuming if you were using a transformation pipe like gzip, those bytes will be the compressed ones  instead of the downloaded


You also keep the pgdumper in alignment with the postgres version. I think pg11 will break the current outdated pg_dumper version. Needs testing.


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json is not formatted, please review, deleting this branch


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