[R/DAISIE_area_params.R:18:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_area_params.R#L18) *style:* **functions should have cyclomatic complexity of less than 15, this has 31.**
```r
are_area_pars <- function(area_pars) {
^
```
[R/DAISIE_area_params.R:70:49:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_area_params.R#L70) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
                             sea_level_frequency){
                                                ^~
```
[R/DAISIE_check_format.R:6:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_check_format.R#L6) *style:* **functions should have cyclomatic complexity of less than 15, this has 35.**
```r
are_rates <- function(x) {
^
```
[R/DAISIE_check_format.R:104:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_check_format.R#L104) *style:* **Commented code should be removed.**
```r
    # if (!"branching_times" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:105:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_check_format.R#L105) *style:* **Commented code should be removed.**
```r
    # if (!"stac" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:106:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_check_format.R#L106) *style:* **Commented code should be removed.**
```r
    # if (!"missing_species" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:120:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_check_format.R#L120) *style:* **functions should have cyclomatic complexity of less than 15, this has 75.**
```r
are_DAISIE_create_sim_pars <- function(pars) {
^
```
[R/DAISIE_check_format.R:120:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_check_format.R#L120) *style:* **Variable and function name style should be snake_case.**
```r
are_DAISIE_create_sim_pars <- function(pars) {
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:18:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_create_island.R#L18) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_sim_params.R:27:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_create_sim_params.R#L27) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_sim_pars <- function(time = 10,
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_sim_params.R:28:31:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_create_sim_params.R#L28) *style:* **Variable and function name style should be snake_case.**
```r
                              M = 1000,
                              ^
```
[R/DAISIE_data.R:8:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
#' #' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:48:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in list
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:53:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L53) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:93:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
#' @title Colonization and branching times of 8 terrestrial avifaunal clades in table
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:97:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L97) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A table containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:104:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L104) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic: for cases where both island and non-island populations of the species have been sampled) \cr
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:105:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L105) *style:* **Lines should not be more than 80 characters.**
```r
#' * Non_endemic_MaxAge: for cases where island population of the species has not
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:125:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L125) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in RAW format simulated with the ML parameters of the CR model
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:128:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:159:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L159) *style:* **Lines should not be more than 80 characters.**
```r
#' @title 1000 islands in DAISIE format simulated with the ML parameters of the CR
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:162:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L162) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:198:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L198) *style:* **Lines should not be more than 80 characters.**
```r
#' @description Each simulated dataset is an element of the list, which can be called using
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:248:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L248) *style:* **Lines should not be more than 80 characters.**
```r
#' @description A list containing the colonization and branching times of the terrestrial
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:257:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L257) *style:* **Lines should not be more than 80 characters.**
```r
#' The following elements of the list each contains information on a single colonist lineage
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:271:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L271) *style:* **Lines should not be more than 80 characters.**
```r
#' #' \code{$missing_species} - number of island species that were not sampled for
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:287:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L287) *style:* **Lines should not be more than 80 characters.**
```r
#' format, accepted by DAISIE_ML, DAISIE_SR_ML, DAISIE_loglik_all and DAISIE_SR_loglik_all
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_data.R:322:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_data.R#L322) *style:* **Lines should not be more than 80 characters.**
```r
#' @seealso \code{\link{DAISIE_dataprep}}, \code{\link{DAISIE_ML}}, \code{\link{DAISIE_SR_ML}}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:91:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L91) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Create Galapagos data object where all taxa have the same macroevolutionary process
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:101:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L101) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:116:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L116) *style:* **Lines should not be more than 80 characters.**
```r
#' # for the Darwin's finches. One process applies to type 1 species (all species
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:118:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L118) *style:* **Lines should not be more than 80 characters.**
```r
#' # (Darwin's finches). Set fraction of potential colonists of type 2 to be 0.163.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L131) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
DAISIE_dataprep <- function(datatable,
^
```
[R/DAISIE_dataprep.R:131:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L131) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_dataprep <- function(datatable,
^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:133:28:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
                           M,
                           ^
```
[R/DAISIE_dataprep.R:141:13:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L141) *style:* **Variable and function name style should be snake_case.**
```r
  datatable$Missing_species <- as.numeric(as.character
            ^~~~~~~~~~~~~~~
```
[R/DAISIE_dataprep.R:152:40:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L152) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      not_present_type1 <- DDD::roundn( (M / number_colonisations) *
                                       ^
```
[R/DAISIE_dataprep.R:155:40:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L155) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
      not_present_type2 <- DDD::roundn( (M / number_colonisations) *
                                       ^
```
[R/DAISIE_dataprep.R:168:13:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L168) *warning:* **Avoid 1:nrow(...) expressions, use seq_len.**
```r
  for (i in 1:nrow(datatable)) {
            ^
```
[R/DAISIE_dataprep.R:198:37:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_dataprep.R#L198) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
      if (max(the_brts) > island_age){
                                    ^~
```
[R/DAISIE_ExpEIN.R:2:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L2) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:6:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:7:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:27:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L27) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:28:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L28) *style:* **Lines should not be more than 80 characters.**
```r
#' ### Compute the expected values at t = 4, for a mainland pool size of 1000 potential
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:29:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L29) *style:* **Lines should not be more than 80 characters.**
```r
#' # colonists and a vector of 5 parameters (cladogenesis, extinction, clade-level carrying
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:31:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L31) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^~
```
[R/DAISIE_ExpEIN.R:37:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L37) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/DAISIE_ExpEIN.R:39:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
^~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:39:36:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
                                   ^
```
[R/DAISIE_ExpEIN.R:39:39:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_ExpEIN <- function(t, pars, M, initEI = c(0, 0)) {
                                      ^~~~~~
```
[R/DAISIE_ExpEIN.R:46:8:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L46) *style:* **Variable and function name style should be snake_case.**
```r
       M2 <- M - DDD::roundn(pars1[11] * M)
       ^~
```
[R/DAISIE_ExpEIN.R:48:8:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L48) *style:* **Variable and function name style should be snake_case.**
```r
       M2 <- M
       ^~
```
[R/DAISIE_ExpEIN.R:50:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
   A <- mu - lac
   ^
```
[R/DAISIE_ExpEIN.R:51:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L51) *style:* **Variable and function name style should be snake_case.**
```r
   B <- lac + mu + ga + laa
   ^
```
[R/DAISIE_ExpEIN.R:52:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L52) *style:* **Variable and function name style should be snake_case.**
```r
   C <- laa + 2 * lac + ga
   ^
```
[R/DAISIE_ExpEIN.R:53:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L53) *style:* **Variable and function name style should be snake_case.**
```r
   DD <- laa + 2 * lac
   ^~
```
[R/DAISIE_ExpEIN.R:54:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L54) *style:* **Variable and function name style should be snake_case.**
```r
   E0 <- initEI[1]
   ^~
```
[R/DAISIE_ExpEIN.R:55:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
   I0 <- initEI[2]
   ^~
```
[R/DAISIE_ExpEIN.R:57:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L57) *style:* **Variable and function name style should be snake_case.**
```r
      Imm <- ga * M2 / B
      ^~~
```
[R/DAISIE_ExpEIN.R:58:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
      End <- DD / A * Imm
      ^~~
```
[R/DAISIE_ExpEIN.R:60:8:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L60) *style:* **Commented code should be removed.**
```r
      #Imm = M2 * ga / B * (1 - exp(-B * t))
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_ExpEIN.R:63:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L63) *style:* **Variable and function name style should be snake_case.**
```r
      Imm <- M2 * ga / B - (M2 * ga / B - I0) * exp(-B * t)
      ^~~
```
[R/DAISIE_ExpEIN.R:64:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
      End <- DD / C * (M2 * ga / A - M2 * ga / B +
      ^~~
```
[R/DAISIE_ExpEIN.R:68:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L68) *style:* **Variable and function name style should be snake_case.**
```r
   All <- End + Imm
   ^~~
```
[R/DAISIE_ExpEIN.R:69:4:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_ExpEIN.R#L69) *style:* **Variable and function name style should be snake_case.**
```r
   expEIN <- list(End, Imm, All)
   ^~~~~~
```
[R/DAISIE_extract_stt_median.R:5:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_extract_stt_median.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_extract_stt_median <- function(
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_extract_stt_median.R:5:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_extract_stt_median.R#L5) *warning:* **local variable ‘time’ assigned but may not be used**
```r
  time <- max(island_replicates[[1]][[1]]$stt_all[, 1])
  ^~~~
```
[R/DAISIE_format_CS.R:13:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 38.**
```r
DAISIE_format_CS <- function(island_replicates,
^
```
[R/DAISIE_format_CS.R:13:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_CS <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_CS.R:15:30:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                             M,
                             ^
```
[R/DAISIE_format_CS.R:57:51:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L57) *style:* **Commas should always have a space after.**
```r
      second_line_stts <- lapply(stt_list, "[", 2,)
                                                  ^
```
[R/DAISIE_format_CS.R:79:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L79) *style:* **Variable and function name style should be snake_case.**
```r
      nI <- unlist(nI_list)
      ^~
```
[R/DAISIE_format_CS.R:80:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L80) *style:* **Variable and function name style should be snake_case.**
```r
      nA <- unlist(nA_list)
      ^~
```
[R/DAISIE_format_CS.R:81:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_CS.R#L81) *style:* **Variable and function name style should be snake_case.**
```r
      nC <- unlist(nC_list)
      ^~
```
[R/DAISIE_format_GW.R:17:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L17) *style:* **functions should have cyclomatic complexity of less than 15, this has 39.**
```r
DAISIE_format_GW <- function(island_replicates,
^
```
[R/DAISIE_format_GW.R:17:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_GW <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:19:29:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
                            M,
                            ^
```
[R/DAISIE_format_GW.R:27:15:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L27) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for (rep in 1:length(island_replicates)) {
              ^
```
[R/DAISIE_format_GW.R:31:15:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L31) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(full_list)) {
              ^
```
[R/DAISIE_format_GW.R:35:19:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L35) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for (j in 1:length(full_list[[i]]$taxon_list)) {
                  ^
```
[R/DAISIE_format_GW.R:48:15:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L48) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(full_list)) {
              ^
```
[R/DAISIE_format_GW.R:54:19:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L54) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for (j in 1:length(full_list[[i]]$taxon_list)) {
                  ^
```
[R/DAISIE_format_GW.R:55:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L55) *style:* **Lines should not be more than 80 characters.**
```r
          init_nonend_spec_list[[i]] <- full_list[[i]]$taxon_list[[1]]$init_nonend_spec
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:56:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
          init_end_spec_list[[i]] <- full_list[[i]]$taxon_list[[1]]$init_end_spec
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:57:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L57) *style:* **Lines should not be more than 80 characters.**
```r
          carrying_capacity_list[[i]] <- full_list[[i]]$taxon_list[[1]]$carrying_capacity
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:71:14:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L71) *style:* **Commas should always have a space after.**
```r
    stt_all[,"Time"] <- rev(seq(from = 0,
             ^
```
[R/DAISIE_format_GW.R:76:11:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L76) *warning:* **local variable ‘row_index’ assigned but may not be used**
```r
          row_index <- max(which(stt_list[[x]][, "Time"] >= the_age))
          ^~~~~~~~~
```
[R/DAISIE_format_GW.R:93:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L93) *style:* **Lines should not be more than 80 characters.**
```r
          store_richness_time_slice[x, ] <- stt_list[[x]][max(which(stt_list[[x]][, "Time"] >= the_age)), 2:4]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:113:25:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L113) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
              for (j in 1:length(full_list[[i]]$taxon_list)) {
                        ^
```
[R/DAISIE_format_GW.R:114:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L114) *style:* **Lines should not be more than 80 characters.**
```r
                taxon_sublist_name <- paste0("taxon_sublist_", c(1:length(full_list[[i]]$taxon_list)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:114:66:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L114) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
                taxon_sublist_name <- paste0("taxon_sublist_", c(1:length(full_list[[i]]$taxon_list)))
                                                                 ^
```
[R/DAISIE_format_GW.R:116:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L116) *style:* **Lines should not be more than 80 characters.**
```r
                island_list <- append(island_list, list(get(taxon_sublist_name[[j]])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:128:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L128) *style:* **Lines should not be more than 80 characters.**
```r
                                 not_present = M, #check what not_present should be
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_GW.R:136:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_GW.R#L136) *style:* **Lines should not be more than 80 characters.**
```r
                                 all_carrying_capacities = carrying_capacity_vec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:28:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L28) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_format_IW <- function(island_replicates,
^~~~~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:30:30:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
                             M,
                             ^
```
[R/DAISIE_format_IW.R:36:15:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L36) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for (rep in 1:length(island_replicates)) {
              ^
```
[R/DAISIE_format_IW.R:44:17:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L44) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(the_island$taxon_list)) {
                ^
```
[R/DAISIE_format_IW.R:86:17:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L86) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (y in 1:length(the_island$taxon_list)) {
                ^
```
[R/DAISIE_format_IW.R:106:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L106) *style:* **Variable and function name style should be snake_case.**
```r
Add_brt_table <- function(island) {
^~~~~~~~~~~~~
```
[R/DAISIE_format_IW.R:117:15:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L117) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (i in 1:length(island)) {
              ^
```
[R/DAISIE_format_IW.R:139:17:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L139) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(island_no_stac1or5)) {
                ^
```
[R/DAISIE_format_IW.R:143:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L143) *style:* **Variable and function name style should be snake_case.**
```r
      brts_IWK <- matrix(ncol = 4, nrow = length(brts))
      ^~~~~~~~
```
[R/DAISIE_format_IW.R:145:17:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L145) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(btimes)) {
                ^
```
[R/DAISIE_format_IW.R:161:17:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_format_IW.R#L161) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
      for (i in 1:length(stac1_5s)) {
                ^
```
[R/DAISIE_get_brts_mya.R:12:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_get_brts_mya.R#L12) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_get_brts_mya <- function(data_table) {
^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_IC.R:61:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_IC.R#L61) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_IC <- function(datalist,
^~~~~~~~~
```
[R/DAISIE_IC.R:70:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_IC.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
  MLE_obs <- DAISIE_ML(
  ^~~~~~~
```
[R/DAISIE_IC.R:97:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_IC.R#L97) *style:* **Variable and function name style should be snake_case.**
```r
  MLE <- rep(0, endmc)
  ^~~
```
[R/DAISIE_IC.R:98:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_IC.R#L98) *style:* **Variable and function name style should be snake_case.**
```r
  LL <- rep(0, endmc)
  ^~
```
[R/DAISIE_IC.R:125:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_IC.R#L125) *style:* **Variable and function name style should be snake_case.**
```r
  WIC <- -2 * MLE_obs$loglik - 2 * mean(LL - MLE)
  ^~~
```
[R/DAISIE_IC.R:126:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_IC.R#L126) *style:* **Variable and function name style should be snake_case.**
```r
  AICb <- -2 * MLE_obs$loglik - 4 * mean(LL - MLE_obs)
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:11:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_ontogeny a string describing the type of island ontogeny. Can be \code{NULL},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:11:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L11) *warning:* **local variable ‘gam0’ assigned but may not be used**
```r
  gam0 <- parsvec[9]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:12:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L12) *warning:* **local variable ‘laa0’ assigned but may not be used**
```r
  laa0 <- parsvec[10]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:13:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L13) *warning:* **local variable ‘ext_pars’ assigned but may not be used**
```r
  ext_pars <- pars1[6:7]
  ^~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:15:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L15) *warning:* **local variable ‘ddep’ assigned but may not be used**
```r
  ddep <- parsvec[13]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L16) *warning:* **local variable ‘ddep’ assigned but may not be used**
```r
  ddep <- parsvec[13]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:16:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L16) *warning:* **local variable ‘laa0’ assigned but may not be used**
```r
  laa0 <- pars1[10]
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:18:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
#' Proceedings of the Royal Society of London B: Biological Sciences 281.1784 (2014): 20133227.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:43:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L43) *style:* **Commented code should be removed.**
```r
#parsvec[1:4] = area_pars
 ^~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:44:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L44) *style:* **Commented code should be removed.**
```r
#parsvec[5] = lac0
 ^~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:45:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L45) *style:* **Commented code should be removed.**
```r
#parsvec[6:7] = mupars
 ^~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:46:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L46) *style:* **Commented code should be removed.**
```r
#parsvec[8] = K0
 ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:47:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L47) *style:* **Commented code should be removed.**
```r
#parsvec[9] = gam0
 ^~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:48:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L48) *style:* **Commented code should be removed.**
```r
#parsvec[10] = laa0
 ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:49:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L49) *style:* **Commented code should be removed.**
```r
#parsvec[11] = island_ontogeny
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:50:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L50) *style:* **Commented code should be removed.**
```r
#parsvec[12] = kk
 ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:51:2:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L51) *style:* **Commented code should be removed.**
```r
#parsvec[13] = ddep
 ^~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:53:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L53) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_time <- function(t, x, parsvec) {
^~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:55:24:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L55) *style:* **Put spaces around all infix operators.**
```r
  lx <- (length(x) - 1)/2
                      ~^~
```
[R/DAISIE_loglik_CS_time.R:62:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L62) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- parsvec[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:120:40:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L120) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    muvec[il2] * nn[in2] * xx1[ix2] + -(muvec[il3] + lacvec[il3]) *
                                       ^
```
[R/DAISIE_loglik_CS_time.R:126:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L126) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3 + 1] + lacvec[il3 + 1]) * nn[in3 + 1] * xx2[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:128:11:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L128) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  dx3 <- -(laavec[il3[1]] + lacvec[il3[1]] + gamvec[il3[1]] +
          ^
```
[R/DAISIE_loglik_CS_time.R:133:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_time2 <- function(t, x, parsvec) {
^~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:135:20:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L135) *style:* **Put spaces around all infix operators.**
```r
  lx <- (length(x))/3
                  ~^~
```
[R/DAISIE_loglik_CS_time.R:143:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L143) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- parsvec[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:213:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L213) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3] + lacvec[il3]) * nn[in3] * xx1[ix3] - gamvec[il3] * xx1[ix3]
     ^
```
[R/DAISIE_loglik_CS_time.R:215:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L215) *style:* **Lines should not be more than 80 characters.**
```r
  # immigration when there are n+k species: Q^k,n -> Q^M,k_n; n+k species present
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:223:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L223) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(muvec[il3 + 1] + lacvec[il3 + 1]) * nn[in3 + 1] * xx2[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:227:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L227) *style:* **Lines should not be more than 80 characters.**
```r
  # cladogenesis in one of the n-1 species: Q_M,n-1 -> Q_M,n; n+k-1 species present; rate once
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:228:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L228) *style:* **Lines should not be more than 80 characters.**
```r
  # extinction in one of the n+1 species: Q_M,n+1 -> Q_M,n; n+k+1 species present
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:232:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L232) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(lacvec[il3] + muvec[il3]) * nn[in3] * xx3[ix3] +
     ^
```
[R/DAISIE_loglik_CS_time.R:233:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L233) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    -(laavec[il3] + gamvec[il3]) * xx3[ix3]
     ^
```
[R/DAISIE_loglik_CS_time.R:238:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L238) *style:* **Commented code should be removed.**
```r
  # pars1[1:4] = area_pars
    ^~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:239:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L239) *style:* **Commented code should be removed.**
```r
  # pars1[5] = lac0
    ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:240:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L240) *style:* **Commented code should be removed.**
```r
  # pars1[6:7] = mupars
    ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:241:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L241) *style:* **Commented code should be removed.**
```r
  # pars1[8] = K0
    ^~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:242:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L242) *style:* **Commented code should be removed.**
```r
  # pars1[9] = gam0
    ^~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:243:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L243) *style:* **Commented code should be removed.**
```r
  # pars1[10] = laa0
    ^~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:244:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L244) *style:* **Commented code should be removed.**
```r
  # pars1[11] = island_ontogeny
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:245:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L245) *style:* **Commented code should be removed.**
```r
  # pars1[12] = t
    ^~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:250:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L250) *style:* **Variable and function name style should be snake_case.**
```r
  K0 <- pars1[8]
  ^~
```
[R/DAISIE_loglik_CS_time.R:262:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L262) *style:* **Variable and function name style should be snake_case.**
```r
  lacA <- lac0
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:263:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L263) *style:* **Variable and function name style should be snake_case.**
```r
  gamA <- gam0
  ^~~~
```
[R/DAISIE_loglik_CS_time.R:264:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L264) *style:* **Variable and function name style should be snake_case.**
```r
  KA <- area * K0
  ^~
```
[R/DAISIE_loglik_CS_time.R:266:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L266) *style:* **Variable and function name style should be snake_case.**
```r
  K <- KA
  ^
```
[R/DAISIE_loglik_CS_time.R:267:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L267) *style:* **Variable and function name style should be snake_case.**
```r
  lacgamK <- c(lacgam, K)
  ^~~~~~~
```
[R/DAISIE_loglik_CS_time.R:271:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L271) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_integrate_time <- function(initprobs,
^~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:279:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L279) *style:* **Lines should not be more than 80 characters.**
```r
  do_fun_1 <- grepl(pattern = "lx <- \\(length\\(x\\) - 1\\)/2", x = function_as_text)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS_time.R:280:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS_time.R#L280) *style:* **Lines should not be more than 80 characters.**
```r
  do_fun_2 <- grepl(pattern = "lx <- \\(length\\(x\\)\\)/3", x = function_as_text)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:1:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L1) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_loglik_rhs_precomp <- function(pars,lx)
^~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:1:44:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L1) *style:* **Commas should always have a space after.**
```r
DAISIE_loglik_rhs_precomp <- function(pars,lx)
                                           ^
```
[R/DAISIE_loglik_CS.R:2:1:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L2) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
{
^
```
[R/DAISIE_loglik_CS.R:3:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L3) *style:* **Use <-, not =, for assignment.**
```r
  lac = pars[1]
      ^
```
[R/DAISIE_loglik_CS.R:4:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L4) *style:* **Use <-, not =, for assignment.**
```r
  mu = pars[2]
     ^
```
[R/DAISIE_loglik_CS.R:5:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
  K = pars[3]
  ^
```
[R/DAISIE_loglik_CS.R:5:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L5) *style:* **Use <-, not =, for assignment.**
```r
  K = pars[3]
    ^
```
[R/DAISIE_loglik_CS.R:6:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L6) *style:* **Use <-, not =, for assignment.**
```r
  gam = pars[4]
      ^
```
[R/DAISIE_loglik_CS.R:7:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L7) *style:* **Use <-, not =, for assignment.**
```r
  laa = pars[5]
      ^
```
[R/DAISIE_loglik_CS.R:8:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L8) *style:* **Use <-, not =, for assignment.**
```r
  kk = pars[6]
     ^
```
[R/DAISIE_loglik_CS.R:8:16:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L8) *warning:* **no visible global function definition for ‘divdepvec_time’**
```r
    lacgamK <- divdepvec_time(lacgam, pars1, lx, k1, ddep, island_ontogeny)
               ^~~~~~~~~~~~~~
```
[R/DAISIE_loglik_CS.R:9:8:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L9) *style:* **Use <-, not =, for assignment.**
```r
  ddep = pars[7]
       ^
```
[R/DAISIE_loglik_CS.R:11:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L11) *style:* **Use <-, not =, for assignment.**
```r
  nn = -2:(lx+2*kk+1)
     ^
```
[R/DAISIE_loglik_CS.R:11:14:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
            ~^~
```
[R/DAISIE_loglik_CS.R:11:16:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
              ~^~
```
[R/DAISIE_loglik_CS.R:11:19:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L11) *style:* **Put spaces around all infix operators.**
```r
  nn = -2:(lx+2*kk+1)
                 ~^~
```
[R/DAISIE_loglik_CS.R:12:7:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L12) *style:* **Use <-, not =, for assignment.**
```r
  lnn = length(nn)
      ^
```
[R/DAISIE_loglik_CS.R:13:6:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L13) *style:* **Use <-, not =, for assignment.**
```r
  nn = pmax(rep(0,lnn),nn)
     ^
```
[R/DAISIE_loglik_CS.R:13:19:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L13) *style:* **Commas should always have a space after.**
```r
  nn = pmax(rep(0,lnn),nn)
                  ^
```
[R/DAISIE_loglik_CS.R:13:24:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L13) *style:* **Commas should always have a space after.**
```r
  nn = pmax(rep(0,lnn),nn)
                       ^
```
[R/DAISIE_loglik_CS.R:15:5:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L15) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(ddep == 0)
    ^
```
[R/DAISIE_loglik_CS.R:16:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L16) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:17:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L17) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:17:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L17) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:18:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L18) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = lac * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:18:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L18) *style:* **Commas should always have a space after.**
```r
    lacvec = lac * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:19:11:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L19) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:19:24:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L19) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:20:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L20) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:20:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L20) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:21:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L21) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 1)
           ^
```
[R/DAISIE_loglik_CS.R:22:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L22) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:23:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L23) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:23:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L23) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:24:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L24) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:24:25:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L24) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                        ^
```
[R/DAISIE_loglik_CS.R:24:30:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L24) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                             ^
```
[R/DAISIE_loglik_CS.R:24:43:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L24) *style:* **Put spaces around all infix operators.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                                         ~^~
```
[R/DAISIE_loglik_CS.R:25:11:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L25) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:25:24:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L25) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:26:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L26) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:26:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L26) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:27:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L27) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 2)
           ^
```
[R/DAISIE_loglik_CS.R:28:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L28) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:29:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L29) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:29:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L29) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:30:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L30) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:30:25:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L30) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
                        ^
```
[R/DAISIE_loglik_CS.R:30:30:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L30) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
                             ^
```
[R/DAISIE_loglik_CS.R:30:43:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L30) *style:* **Put spaces around all infix operators.**
```r
    lacvec = pmax(rep(0,lnn),lac * exp(-nn/K))
                                         ~^~
```
[R/DAISIE_loglik_CS.R:31:11:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L31) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:31:24:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L31) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:32:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L32) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = gam * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:32:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L32) *style:* **Commas should always have a space after.**
```r
    gamvec = gam * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:33:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L33) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  } else if(ddep == 11)
           ^
```
[R/DAISIE_loglik_CS.R:34:3:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L34) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
  {
  ^
```
[R/DAISIE_loglik_CS.R:35:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L35) *style:* **Use <-, not =, for assignment.**
```r
    laavec = laa * rep(1,lnn)
           ^
```
[R/DAISIE_loglik_CS.R:35:26:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L35) *style:* **Commas should always have a space after.**
```r
    laavec = laa * rep(1,lnn)
                         ^
```
[R/DAISIE_loglik_CS.R:36:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L36) *style:* **Use <-, not =, for assignment.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:36:25:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L36) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                        ^
```
[R/DAISIE_loglik_CS.R:36:30:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L36) *style:* **Commas should always have a space after.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                             ^
```
[R/DAISIE_loglik_CS.R:36:43:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L36) *style:* **Put spaces around all infix operators.**
```r
    lacvec = pmax(rep(0,lnn),lac * (1 - nn/K))
                                         ~^~
```
[R/DAISIE_loglik_CS.R:37:11:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L37) *style:* **Use <-, not =, for assignment.**
```r
    muvec = mu * rep(1,lnn)
          ^
```
[R/DAISIE_loglik_CS.R:37:24:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L37) *style:* **Commas should always have a space after.**
```r
    muvec = mu * rep(1,lnn)
                       ^
```
[R/DAISIE_loglik_CS.R:38:12:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L38) *style:* **Use <-, not =, for assignment.**
```r
    gamvec = pmax(rep(0,lnn),gam * (1 - nn/K))
           ^
```
[R/DAISIE_loglik_CS.R:38:25:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L38) *style:* **Commas should always have a space after.**
```r
    gamvec = pmax(rep(0,lnn),gam * (1 - nn/K))
                        ^
```
[R/DAISIE_loglik_CS.R:38:30:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L38) *style:* **Commas should always have a space after.**
```r
    gamvec = pmax(rep(0,lnn),gam * (1 - nn/K))
                             ^
```
[R/DAISIE_loglik_CS.R:38:43:](https://github.com/rsetienne/DAISIE/blob/2c15ed0416381c7dc73c681f6f2c6491483c1b3c/R/DAISIE_loglik_CS.R#L38) *style:* **Put spaces around all infix operators.**
```r
    gamvec = pmax(rep(0,lnn),gam * (1 - nn/K))
                                         ~^~
```


Game was extremely choppy on this version coming from 4.1a of your config. Will try to play around with the changes since that version to find out what's causing it.


@JuliaRegistrator register

Release notes:

add tight label spacing functions, add option to ignore fixed size for auto columns, fix bugs


Registration pull request created: [JuliaRegistries/General/5700](https://github.com/JuliaRegistries/General/pull/5700)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.1.4 -m "<description of version>" aaa54dd8ff01f32415e81ec51f5b1963811bca7e
git push origin v0.1.4
```


TeamCity Glyssen / Glyssen pull requests [Build *.*.697.d0554fb6dfea5c004cd45479a668bbdbf9d9cedf](https://build.palaso.org/viewLog.html?buildId=169903&buildTypeId=Glyssen_GlyssenPullRequests2) outcome was **FAILURE**
Summary: Tests failed: 1 (1 new), passed: 2365, ignored: 18 Build time: 00:10:45
### Failed tests
```
GlyssenTests.dll: GlyssenTests.ProjectTests.Constructor_CreateNewProjectFromBundle_BundleHasNoLdmlFile_WsLdmlAndIsoCodesHaveCountySpecified_ProjectIsCreatedSuccessfully: Test(s) failed. Test exceeded Timeout value of 10000ms

```


It felt unconsistent with the rest of blocks/newlines, since they all go to stdout.


@JuliaRegistrator register


Registration pull request created: [JuliaRegistries/General/5701](https://github.com/JuliaRegistries/General/pull/5701)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.5.1 -m "<description of version>" a7a84749b32e7ab309c3e217100e50623286d376
git push origin v0.5.1
```


message correction:
added private routes **and** auth guards for login


Yes, but it is omitted if it is empty.


Yeah, I've fixed this since.


There is a typo in the file name, should be `.../error_responses.rb` I guess :-)


input != "" instead strlen


Successfully deployed to following URLs:

* https://mental-models-i29jpg1f6.now.sh
* https://mental-models.now.sh
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* https://mental-models-git-master.joeybaker.now.sh


Successfully deployed to following URLs:

* https://haitao-admin-fhgwlxni6.now.sh
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* https://haitao-admin-git-master.wangyi.now.sh


Successfully deployed to following URLs:

* https://alexburgos-mrr7g0e9o.now.sh
* https://www.burgos.co
* https://burgos.co
* https://alexburgos.alexburgos.now.sh
* https://alexburgos-git-master.alexburgos.now.sh


Successfully deployed to following URLs:

* https://kauri-serverless-migration-gb3dd7lix.now.sh
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* https://dev.kauri.io
* https://kauri-serverless-migration.kauri.now.sh
* https://kauri-serverless-migration-git-master.kauri.now.sh


Bugs changed in this commit are changes in the hamstall config not saving, a better worded response to `hamstall -v`, and references to functions that were moved away from prog_manage.


Successfully deployed to following URLs:

* https://smokeyfro-iy2c1ej30.now.sh
* https://smokeyfro.com
* https://smokeyfro.smokeyfro.now.sh
* https://smokeyfro-git-master.smokeyfro.now.sh


`reject` is not defined here.


Successfully deployed to following URLs:

* https://mental-models-xzmxzt983.now.sh
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* https://mental-models-git-master.joeybaker.now.sh


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* https://finance-3idw0q7v2.now.sh
* https://finance.kos.sh
* https://finance.prplx.now.sh
* https://finance-git-master.prplx.now.sh


The purpose of this study is to determine if retention rates differed among first generation Latino students in the Educational Opportunity Fund (EOF) Program, and first generation latino students not in the EOF program from first to second year and from second to third year. In order to be in the EOF program, students must apply and be admitted to the program based on academic and financial need. This study is done at the three Rutgers Universities for the state of New Jersey. Rutgers University-New Brunswick, Rutgers University-Newark and Rutgers University-Camden.


Successfully deployed to following URLs:

* https://weather-forecast-demo-app-e0rmy825d.now.sh
* https://weather-forecast-demo-app.now.sh
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* https://weather-forecast-demo-app-git-master.robhowell.now.sh


This is the first step towards netbox-community#822


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@tbaddade Ich hatte das Problem auch, und solange GitHub noch keine gute Lösung anbietet, kannst dir in deinem GitHub-Profil einen Private Token generieren, den du zum Zugriff über HTTPS verwendest, etwa auch in einem Git-Client.


Removing the `stream_memory` variable seems to fix it.
When it was on 32000 the models looked horrible like when `r_lod_switch_scale` is set to very low, but weirder.
the models nearby kept switching between HQ and LQ constantly.


[Robin Ward posted](https://review.discourse.org/t/revert-use-1-0-6-for-linting-for-now/7179/3):

 https://review.discourse.org/t/revert-revert-use-1-0-6-for-linting-for-now/7204


I'm looking at myself too


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* https://thisishugocom-git-master.dissimile.now.sh


Successfully deployed to following URLs:

* https://smokeyfro-igqvz35ux.now.sh
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* https://smokeyfro.smokeyfro.now.sh
* https://smokeyfro-git-master.smokeyfro.now.sh


Sửa lỗi brand Id array, update giao diện cho brand filter


"temoprary"


We can probably replace this with `onp.zeros(onp.shape(x), dtype=onp.result_type(x))`


I have just checked, it is already the case


TeamCity Glyssen / Glyssen pull requests [Build *.*.698.f2bd19f8c66789e17ddd974fc1b0f5f59f022397](https://build.palaso.org/viewLog.html?buildId=169905&buildTypeId=Glyssen_GlyssenPullRequests2) outcome was **FAILURE**
Summary: Tests failed: 20, passed: 2348, ignored: 18 Build time: 00:10:10
### Failed tests
```
GlyssenTests.dll: GlyssenTests.BlockMatchupTests.InsertHeSaidText_EmptyRowsAreStartOfMultiBlockQuote_HeSaidInsertedIntoEmptyRefTextsAndBlockChainBroken("Unknown",null): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.ApplyTo(BookScript vernacularBook) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 216
   at GlyssenTests.BlockMatchupTests.InsertHeSaidText_EmptyRowsAreStartOfMultiBlockQuote_HeSaidInsertedIntoEmptyRefTextsAndBlockChainBroken(String origCharacter, String refTextCharacter) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BlockMatchupTests.cs:line 1561

GlyssenTests.dll: GlyssenTests.BlockMatchupTests.InsertHeSaidText_EmptyRowsAreStartOfMultiBlockQuote_HeSaidInsertedIntoEmptyRefTextsAndBlockChainBroken("Unknown","Andrew"): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.ApplyTo(BookScript vernacularBook) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 216
   at GlyssenTests.BlockMatchupTests.InsertHeSaidText_EmptyRowsAreStartOfMultiBlockQuote_HeSaidInsertedIntoEmptyRefTextsAndBlockChainBroken(String origCharacter, String refTextCharacter) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BlockMatchupTests.cs:line 1561

GlyssenTests.dll: GlyssenTests.BlockMatchupTests.Apply_VernVersesInMiddleOfQuoteChainAssignedGoFromUnknownToNarrator_QuoteChainBrokenCorrectly: Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BlockMatchupTests.Apply_VernVersesInMiddleOfQuoteChainAssignedGoFromUnknownToNarrator_QuoteChainBrokenCorrectly() in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BlockMatchupTests.cs:line 553

GlyssenTests.dll: GlyssenTests.BlockMatchupTests.InsertHeSaidText_EmptyRowsAreStartOfMultiBlockQuote_HeSaidInsertedIntoEmptyRefTextsAndBlockChainBroken("Ambiguous",null): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.ApplyTo(BookScript vernacularBook) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 216
   at GlyssenTests.BlockMatchupTests.InsertHeSaidText_EmptyRowsAreStartOfMultiBlockQuote_HeSaidInsertedIntoEmptyRefTextsAndBlockChainBroken(String origCharacter, String refTextCharacter) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BlockMatchupTests.cs:line 1561

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_MatchupWithUserSplitSubsequentlyAlignedToReferenceText_TextUnchanged_SplitAndAlignmentsApplied(26,14,"Hamatean i do musu na parpudi sipasohotonna i. "): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_MatchupWithUserSplitSubsequentlyAlignedToReferenceText_TextUnchanged_SplitAndAlignmentsApplied(Int32 verseNum, Int32 splitPos, String fullVerseText) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 1890

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_MatchupWithUserSplitSubsequentlyAlignedToReferenceText_TextUnchanged_SplitAndAlignmentsApplied(1,14,"Alai naeng ma pabotohononku tu. "): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_MatchupWithUserSplitSubsequentlyAlignedToReferenceText_TextUnchanged_SplitAndAlignmentsApplied(Int32 verseNum, Int32 splitPos, String fullVerseText) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 1890

GlyssenTests.dll: GlyssenTests.ProjectExportTests.GetExportData_SingleVoice_DeliveryColumnOmitted: Test(s) failed.   Expected: True
  But was:  False

   at NUnit.Framework.Assert.That(Object actual, IResolveConstraint expression, String message, Object[] args)
   at NUnit.Framework.Assert.IsTrue(Boolean condition)
   at GlyssenTests.ProjectExportTests.GetExportData_SingleVoice_DeliveryColumnOmitted() in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\ProjectExportTests.cs:line 276

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_MatchupWithUserSplitSubsequentlyAlignedToReferenceText_TextUnchanged_SplitAndAlignmentsApplied(2,5,"Laos i do parhiteanmuna gabe malua. "): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_MatchupWithUserSplitSubsequentlyAlignedToReferenceText_TextUnchanged_SplitAndAlignmentsApplied(Int32 verseNum, Int32 splitPos, String fullVerseText) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 1890

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_UnalignedSplitBlockInChunkPreviouslyAlignedToReferenceText_TextUnchanged_ManualSplitAndRefTextAlignmentsApplied(2,5,"Laos i do parhiteanmuna gabe malua. "): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_UnalignedSplitBlockInChunkPreviouslyAlignedToReferenceText_TextUnchanged_ManualSplitAndRefTextAlignmentsApplied(Int32 verseNum, Int32 splitPos, String fullVerseText) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 1797

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_UnalignedSplitBlockInChunkPreviouslyAlignedToReferenceText_TextUnchanged_ManualSplitAndRefTextAlignmentsApplied(27,44,"Ai saluhutna do dipatunduk tutoru ni patna. Alai molo saluhut dipatunduk didok, tandap ma disi."): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_UnalignedSplitBlockInChunkPreviouslyAlignedToReferenceText_TextUnchanged_ManualSplitAndRefTextAlignmentsApplied(Int32 verseNum, Int32 splitPos, String fullVerseText) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 1797

GlyssenTests.dll: GlyssenTests.BookScriptTests.ApplyUserDecisions_UnalignedSplitBlockInChunkPreviouslyAlignedToReferenceText_TextChangedInLaterVerse_ManualSplitAndRefTextAlignmentsInUnchangedVersesApplied(3): Test(s) failed. System.NotImplementedException : PG-1277 [WIP] What to do: Set matched or unmatched?
   at Glyssen.ReferenceText.MatchVernBlocksToReferenceTextBlocks(IReadOnlyList`1 vernBlockList, String bookId, ScrVers vernacularVersification, Boolean forceMatch, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 501
   at Glyssen.ReferenceText.GetBlocksForVerseMatchedToReferenceText(BookScript vernacularBook, Int32 iBlock, UInt32 predeterminedBlockCount, Boolean allowSplitting) in C:\BuildAgent\work\6f6447acf44d9c11\Glyssen\ReferenceText.cs:line 0
   at GlyssenTests.BookScriptTests.ApplyUserDecisions_UnalignedSplitBlockInChunkPreviouslyAlignedToReferenceText_TextChangedInLaterVerse_ManualSplitAndRefTextAlignmentsInUnchangedVersesApplied(Int32 verseToChange) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 1835

##### there are 10 more failed tests, see build details
```


[Robin Ward posted](https://review.discourse.org/t/dev-make-it-possible-to-deprecate-plugin-outlet-properties/7162/2):

I like this quite a bit, thank you!


すみません、joinでの修正を間違えてました！
クエリ部分を修正したのと、
エラーメッセージも複数人に対応しています。

---

    // ユーザー選択フィールド用クエリ(複数人対応)
    const userFieldCodeList = [];
    const userFieldNameList = [];
    for (let i = 0; i < userField.length; i++) {
      userFieldCodeList.push(userField[i].code);
      userFieldNameList.push(userField[i].name);
    }
    query += 'userselect in ("' + userFieldCodeList.join('","') + '")';

    const param = {
      'app': kintone.app.getId(),
      'query': query,
    };

    // PromiseでREST(GET)を実行
    return kintone.api(kintone.api.url('/k/v1/records'), 'GET', param)
      .then(function(resp) {
        if (resp.records.length) {
          let errMessage = userFieldNameList.join(' , ');
          if (userFieldNameList.length > 1) {
            errMessage += 'のどれかが重複しています！';
          } else {
            errMessage += 'が重複しています！';
          }
          event.record['userselect'].error = errMessage;
        }
        return event;
      })
      .catch(function() {
        // error
        event.error = '予期せぬエラーが発生しました！';
        return event;
      });


Successfully deployed to following URLs:

* https://front-end-aszp4peul.now.sh
* https://use-my-tools.now.sh
* https://front-end.use-my-tools.now.sh
* https://front-end-git-master.use-my-tools.now.sh


Successfully deployed to following URLs:

* https://portfolio-atydcnjtb.now.sh
* https://portfolio-iota-rosy.now.sh
* https://alexandermay.now.sh
* https://alexandermay.dev
* https://portfolio.amay.now.sh
* https://portfolio-git-master.amay.now.sh


Successfully deployed to following URLs:

* https://medcabinet-frontend-dw8hl7gxm.now.sh
* https://medcabinet-frontend-five-alpha.now.sh
* https://medcabinet-frontend.medical-cabinet.now.sh
* https://medcabinet-frontend-git-master.medical-cabinet.now.sh


<!-- ====================================================================== -->
#   Correctness Tests
<!-- ====================================================================== -->

<!-- ---------------------------------------------------------------------- -->
##  Test 1: Creates a new connection pool
<!-- ---------------------------------------------------------------------- -->

###
                               -- test passed --

<!-- ---------------------------------------------------------------------- -->
##  Test 2: Sets the maximum number of connections to a new value
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:93: pool.GetMaxConnections() returned 0, but set to 1
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 3: Check that it's possible to open a single connection
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:111: Expected exactly 1 connection to be created but 0 were created
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 4: Check that it's possible to open multiple connections concurrently
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:134: Expected exactly 5 connection to be created but 0 were created
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 5: Check that concurrent connections returned from Open are unique
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:155: Unable to open connection
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 6: Check that when opening more connections than the maximum set, Open blocks
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:193: Expected exactly 5 connection to be created but 0 were created
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 7: Check that when opening more connections than the maximum, Open works after closing open connections
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:227: Unable to open connection
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 8: Check that Close handles multiple calls for the same connection correctly
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:276: Expected connection successful after release but got error %!s(<nil>)
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 9: Check that Open blocks until a connection becomes free
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:304: Expected connection to succeed after closing other connection concurrently
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 10: Check that increasing the maximum connections increases the number of possible outstanding connections
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:326: Expected exactly 5 connection to be created but 0 were created
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 11: Check that decreasing the maximum connections decreases the number of possible outstanding connections
<!-- ---------------------------------------------------------------------- -->

  >     TestDecreaseMaxConnAfterFullCommit == %!s(MISSING)   ... FAIL
    conn_pool_test.go:407: Expected exactly 5 connection to be created but 0 were created
  >     TestDecreaseMaxConnAfterFullCommitWithConcurrentOpens == %!s(MISSING) ... FAIL
    conn_pool_test.go:457: Expected exactly 5 connection to be created but 0 were created
    conn_pool_test.go:370: Expected exactly 4 connection to be created but 0 were created
###
                               -- test failed (-1.0) --

<!-- ---------------------------------------------------------------------- -->
##  Test 12: Calls Close with an invalid connection
<!-- ---------------------------------------------------------------------- -->

###
                               -- test passed --

<!-- ---------------------------------------------------------------------- -->
##  Test 13: High concurrency stress test
<!-- ---------------------------------------------------------------------- -->

    conn_pool_test.go:544: pool.Open() returned a duplicate connection
###
                               -- test failed (-1.0) --

--------------------------------------------------------------
Results
--------------------------------------------------------------
>     ========================================================
>        Test summary:
>            Passed   2 / 15  tests     (13 failed)
>            Passed   0 / 2   subtests  (2 failed)
>
>        Score:
>            2.00 points of a possible 15.00  (13.33%)
>     ========================================================


Any reason not to just recursively `cd mantle && make install DESTDIR=$(DESTDIR)`?


Successfully deployed to following URLs:

* https://formik-docs-398l3myot.now.sh
* https://formik-docs.now.sh
* https://formik-docs.jared.now.sh
* https://formik-docs-git-master.jared.now.sh


Now could not deploy this pull request since the `now.json` file does not contain valid JSON.

	Click here to see the contents of `now.json`

{this-is-not-json}

For more information on now.json visit https://zeit.co/docs/features/configuration#now.json.


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


Successfully deployed to following URLs:

* https://ccc-kvww1tuvw.now.sh
* https://ccc.zeit-github-test-dev1.now.sh
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* https://github-e2e-tests-dev-alias-v2-without-alias-git-master.zeit-github-test-dev1.now.sh


Successfully deployed to following URLs:

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pls put as comment inside of the dofile, not externally

On Thu, Nov 21, 2019 at 10:35 AM yosmerizroman <notifications@github.com>
wrote:

> The purpose of this study is to determine if retention rates differed
> among first generation Latino students in the Educational Opportunity Fund
> (EOF) Program, and first generation latino students not in the EOF program
> from first to second year and from second to third year. In order to be in
> the EOF program, students must apply and be admitted to the program based
> on academic and financial need. This study is done at the three Rutgers
> Universities for the state of New Jersey. Rutgers University-New Brunswick,
> Rutgers University-Newark and Rutgers University-Camden.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <https://github.com/yosmerizroman/DataManagement/commit/0726551dd13d1b4c2d29d230dbb075b8f954adc8?email_source=notifications&email_token=AAFJOAEHV34K6TLYU7SYW53QU2TCZA5CNFSM4JQEEDJ2YY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBCM2ZV#commitcomment-36072245>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AAFJOAEUSUCSPCMKHJHW4HLQU2TCZANCNFSM4JQEEDJQ>
> .
>

--
Adam Okulicz-Kozaryn <https://theaok.github.io/>, Assoc Professor, Dept of
Public Policy & Adm, Rutgers, 401 Cooper St  Camden NJ 08102

City Life: Glorification, Desire, and the Unconscious Size Fetish
<https://rucore.libraries.rutgers.edu/rutgers-lib/52123/PDF/1/play/>
in Psychoanalysis
and the GlObal
<http://www.nebraskapress.unl.edu/university-of-nebraska-press/9781496207326/>
Happiness is Flextime
<https://rucore.libraries.rutgers.edu/rutgers-lib/51789/PDF/1/play/>
The More Religiosity, the Less Creativity Across US Counties
<https://rucore.libraries.rutgers.edu/rutgers-lib/48286/PDF/1/play/>


SPOOKY


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* https://code2go-ooij8atqu.now.sh
* https://code2go.dev
* https://code2go.medienwerk.now.sh
* https://code2go-git-master.medienwerk.now.sh


Erg ... publishing failed because we mistakenly dropped
```scala
crossVersion := ScalaJSCrossVersion.binary,
```
from `irJS` and `loggingJS` (somehow not from `linkerJS`) in #3829, so both `ir` and `irJS` want to publish the same artifacts.

Looks like a rollback :(


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