[R/calc_rel_contr_node_time.R:61:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_rel_contr_node_time.R#L61) *style:* **Lines should not be more than 80 characters.**
```r
                                   ((1 - s) * (    num_nodes + num_hidden_nodes))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/calc_rel_contr_node_time.R:61:48:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_rel_contr_node_time.R#L61) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                                   ((1 - s) * (    num_nodes + num_hidden_nodes))
                                               ^
```
[R/calc_rel_contr_node_time.R:63:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_rel_contr_node_time.R#L63) *style:* **Lines should not be more than 80 characters.**
```r
                                   ((1 - s) * (2 * num_nodes + num_hidden_nodes))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/calc_rel_contr_node_time.R:75:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_rel_contr_node_time.R#L75) *style:* **Variable and function names should not be longer than 30 characters.**
```r
calc_expected_hidden_nodes_per_branch <- function(bl, lambda, mu) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/calc_rel_contr_node_time.R:125:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_rel_contr_node_time.R#L125) *style:* **Variable and function names should not be longer than 30 characters.**
```r
  calc_expected_hidden_nodes_per_dt <- function(t, lambda, mu) {
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/calc_summary_statistics.R:64:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_summary_statistics.R#L64) *style:* **Lines should not be more than 80 characters.**
```r
    # this is rather inefficient off course, RPANDA can do all pairwise comparisons?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/calc_summary_statistics.R:65:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_summary_statistics.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
    local_jsd <- tryCatch(RPANDA::JSDtree(list(true_tree, trees[[i]]), meth = "standard")[1,2],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/calc_summary_statistics.R:65:93:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_summary_statistics.R#L65) *style:* **Commas should always have a space after.**
```r
    local_jsd <- tryCatch(RPANDA::JSDtree(list(true_tree, trees[[i]]), meth = "standard")[1,2],
                                                                                ^
```
[R/calc_summary_statistics.R:79:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/calc_summary_statistics.R#L79) *style:* **Lines should not be more than 80 characters.**
```r
                                 "mean_branch_length", "nLTT", "jsd", "topo_dist")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/count_hidden.R:7:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/count_hidden.R#L7) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
reduce_tree <- function(tree) {
^
```
[R/create_equal_alignment.R:4:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/create_equal_alignment.R#L4) *style:* **Lines should not be more than 80 characters.**
```r
#' @param node_model model used to generate substitutions on the nodes (linked or unlinked)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_equal_alignment.R:14:23:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/create_equal_alignment.R#L14) *warning:* **no visible global function definition for ‘count_hidden’**
```r
  num_hidden_nodes <- count_hidden(input_tree)
                      ^~~~~~~~~~~~
```
[R/infer_phylogeny.R:8:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/infer_phylogeny.R#L8) *style:* **Lines should not be more than 80 characters.**
```r
#' @param sub_rate substitution rate used to generate the original alignment (if available), default is 1
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/infer_phylogeny.R:32:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/infer_phylogeny.R#L32) *style:* **Lines should not be more than 80 characters.**
```r
          clock_rate_param = beautier::create_clock_rate_param(value = sub_rate),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_independent.R:1:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L1) *style:* **Lines should not be more than 80 characters.**
```r
#' simulate a sequence assuming node substitutions are shared among the offspring
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_independent.R:13:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
sim_dual_independent <- function(phy,
^
```
[R/sim_dual_independent.R:14:34:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
                                 Q1 = NULL,
                                 ^~
```
[R/sim_dual_independent.R:15:34:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                                 Q2 = NULL,
                                 ^~
```
[R/sim_dual_independent.R:37:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L37) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q1)) Q1 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_dual_independent.R:38:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L38) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q2)) Q2 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_dual_independent.R:41:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L41) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q1)) Q1 <- Q1[lower.tri(Q1)]
                     ^~
```
[R/sim_dual_independent.R:42:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L42) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q2)) Q2 <- Q2[lower.tri(Q2)]
                     ^~
```
[R/sim_dual_independent.R:69:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L69) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number > length(phy$tip.label)) return(TRUE)
      ^
```
[R/sim_dual_independent.R:70:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L70) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number <= length(phy_no_extinct$tip.label)) return(TRUE)
      ^
```
[R/sim_dual_independent.R:79:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L79) *style:* **Variable and function name style should be snake_case.**
```r
    P <- get_p_matrix(node_time, eig_q2, rate2)
    ^
```
[R/sim_dual_independent.R:80:6:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L80) *style:* **Commented code should be removed.**
```r
   # P <- nodeSub::slow_matrix(eig_q2, node_time, rate2)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_independent.R:92:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L92) *style:* **Variable and function name style should be snake_case.**
```r
    P <- get_p_matrix(tl[i], eig_q1, rate1)
    ^
```
[R/sim_dual_independent.R:93:6:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L93) *style:* **Commented code should be removed.**
```r
    #P <- nodeSub::slow_matrix(eig_q1, tl[i], rate1)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_independent.R:105:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L105) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(check_to_extinct_tip(to)) {
      ^
```
[R/sim_dual_independent.R:114:42:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L114) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(phy$tip.label, as.character( (k + 1):num_nodes))
                                         ^
```
[R/sim_dual_independent.R:117:34:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_independent.R#L117) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  alignment_phydat <- phyDat.DNA( as.data.frame(res, stringsAsFactors = FALSE))
                                 ^
```
[R/sim_dual_linked.R:35:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L35) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
make_transition_matrix <- function(mut_double) {
^
```
[R/sim_dual_linked.R:111:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L111) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
sim_dual_linked <- function(phy,
^
```
[R/sim_dual_linked.R:112:29:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L112) *style:* **Variable and function name style should be snake_case.**
```r
                            Q = NULL,
                            ^
```
[R/sim_dual_linked.R:132:19:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L132) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q)) Q <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                  ^
```
[R/sim_dual_linked.R:135:21:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L135) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q)) Q <- Q[lower.tri(Q)]
                    ^
```
[R/sim_dual_linked.R:171:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L171) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number > length(phy$tip.label)) return(TRUE)
      ^
```
[R/sim_dual_linked.R:172:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L172) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number <= length(phy_no_extinct$tip.label)) return(TRUE)
      ^
```
[R/sim_dual_linked.R:191:6:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L191) *style:* **Commented code should be removed.**
```r
   # total_node_subs <- total_node_subs + node_subs_1 + node_subs_2
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_linked.R:196:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L196) *style:* **Variable and function name style should be snake_case.**
```r
      P <- get_p_matrix(branch_length, eig_q, rate)
      ^
```
[R/sim_dual_linked.R:210:9:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L210) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      if(check_to_extinct_tip(offspring[i])) {
        ^
```
[R/sim_dual_linked.R:220:42:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_linked.R#L220) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(phy$tip.label, as.character( (k + 1):num_nodes))
                                         ^
```
[R/sim_dual_parent.R:1:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L1) *style:* **Lines should not be more than 80 characters.**
```r
#' simulate a sequence assuming node substitutions are shared among the offspring
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_parent.R:13:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 18.**
```r
sim_dual_parent <- function(phy,
^
```
[R/sim_dual_parent.R:14:27:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
                          Q1 = NULL,
                          ^~
```
[R/sim_dual_parent.R:15:27:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                          Q2 = NULL,
                          ^~
```
[R/sim_dual_parent.R:29:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L29) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q1)) Q1 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_dual_parent.R:30:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q2)) Q2 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_dual_parent.R:33:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L33) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q1)) Q1 <- Q1[lower.tri(Q1)]
                     ^~
```
[R/sim_dual_parent.R:34:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L34) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q2)) Q2 <- Q2[lower.tri(Q2)]
                     ^~
```
[R/sim_dual_parent.R:64:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
    P <- get_p_matrix(node_time, eig_q2, rate2)
    ^
```
[R/sim_dual_parent.R:86:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L86) *style:* **Variable and function name style should be snake_case.**
```r
      P <- get_p_matrix(branch_length, eig_q1, rate1)
      ^
```
[R/sim_dual_parent.R:105:42:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_dual_parent.R#L105) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(phy$tip.label, as.character( (k + 1):num_nodes))
                                         ^
```
[R/sim_linked.R:12:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_linked.R#L12) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
sim_linked <- function(phy,
^
```
[R/sim_linked.R:13:24:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_linked.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
                       Q = NULL,
                       ^
```
[R/sim_linked.R:33:19:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_linked.R#L33) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q)) Q <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                  ^
```
[R/sim_linked.R:36:21:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_linked.R#L36) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q)) Q <- Q[lower.tri(Q)]
                    ^
```
[R/sim_linked.R:88:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_linked.R#L88) *style:* **Variable and function name style should be snake_case.**
```r
      P <- get_p_matrix(branch_length, eig_q, rate)
      ^
```
[R/sim_linked.R:108:42:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_linked.R#L108) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(phy$tip.label, as.character( (k + 1):num_nodes))
                                         ^
```
[R/sim_normal.R:31:24:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_normal.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
                       Q = NULL,
                       ^
```
[R/sim_normal.R:43:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_normal.R#L43) *style:* **Variable and function name style should be snake_case.**
```r
    Q <- rep(1, lbf * (lbf - 1) / 2)
    ^
```
[R/sim_normal.R:45:21:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_normal.R#L45) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q)) Q <- Q[lower.tri(Q)]
                    ^
```
[R/sim_normal.R:67:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_normal.R#L67) *style:* **Variable and function name style should be snake_case.**
```r
    P <- get_p_matrix(tl[i], eig, rate)
    ^
```
[R/sim_normal.R:81:40:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_normal.R#L81) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(x$tip.label, as.character( (k + 1):num_nodes))
                                       ^
```
[R/sim_unlinked_tree.R:10:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L10) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(class(phy) != "phylo") {
    ^
```
[R/sim_unlinked_tree.R:34:51:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L34) *style:* **Put spaces around all infix operators.**
```r
      to_add <- c(start_node, end_node, t0, t1, t0-t1)
                                                 ~^~
```
[R/sim_unlinked_tree.R:40:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L40) *style:* **Variable and function names should not be longer than 30 characters.**
```r
  calc_expected_hidden_nodes_per_dt <- function(t, lambda, mu) {
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:50:35:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L50) *style:* **Commas should always have a space after.**
```r
                  apply(branches[,c(3,4)], 1,
                                  ^
```
[R/sim_unlinked_tree.R:50:39:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L50) *style:* **Commas should always have a space after.**
```r
                  apply(branches[,c(3,4)], 1,
                                      ^
```
[R/sim_unlinked_tree.R:52:36:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
                        lambda, mu) )
                                   ^
```
[R/sim_unlinked_tree.R:63:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L63) *style:* **Lines should not be more than 80 characters.**
```r
#' simulate a sequence assuming node substitutions are shared among the offspring
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:77:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L77) *style:* **functions should have cyclomatic complexity of less than 15, this has 43.**
```r
sim_unlinked_tree <- function(phy,
^
```
[R/sim_unlinked_tree.R:78:31:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L78) *style:* **Variable and function name style should be snake_case.**
```r
                              Q1 = NULL,
                              ^~
```
[R/sim_unlinked_tree.R:79:31:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L79) *style:* **Variable and function name style should be snake_case.**
```r
                              Q2 = NULL,
                              ^~
```
[R/sim_unlinked_tree.R:104:10:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L104) *style:* **Only use double-quotes.**
```r
    stop('lambda and mu have to be provided')
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:113:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L113) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q1)) Q1 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_unlinked_tree.R:114:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L114) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q2)) Q2 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_unlinked_tree.R:117:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L117) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q1)) Q1 <- Q1[lower.tri(Q1)]
                     ^~
```
[R/sim_unlinked_tree.R:118:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L118) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q2)) Q2 <- Q2[lower.tri(Q2)]
                     ^~
```
[R/sim_unlinked_tree.R:131:51:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L131) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  hidden_nodes <- add_hidden_nodes(phy, lambda, mu )
                                                  ^
```
[R/sim_unlinked_tree.R:146:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L146) *style:* **Lines should not be more than 80 characters.**
```r
  P_n <- nodeSub::slow_matrix(eig_q2, node_time, rate2)    #get_p_matrix(node_time, eig_q2, rate2)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:146:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L146) *style:* **Variable and function name style should be snake_case.**
```r
  P_n <- nodeSub::slow_matrix(eig_q2, node_time, rate2)    #get_p_matrix(node_time, eig_q2, rate2)
  ^~~
```
[R/sim_unlinked_tree.R:146:61:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L146) *style:* **Commented code should be removed.**
```r
  P_n <- nodeSub::slow_matrix(eig_q2, node_time, rate2)    #get_p_matrix(node_time, eig_q2, rate2)
                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:151:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L151) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number > length(phy$tip.label)) return(TRUE)
      ^
```
[R/sim_unlinked_tree.R:152:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L152) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(number <= length(phy_no_extinct$tip.label)) return(TRUE)
      ^
```
[R/sim_unlinked_tree.R:181:9:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L181) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if ( obs_hidden_nodes[i] > 0) {
        ^
```
[R/sim_unlinked_tree.R:186:10:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L186) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      for(j in 1:obs_hidden_nodes[i]) {
         ^
```
[R/sim_unlinked_tree.R:188:14:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L188) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        while(focal_t + dt >= total_bl) {
             ^
```
[R/sim_unlinked_tree.R:198:8:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L198) *style:* **Commented code should be removed.**
```r
      #P_b <- get_p_matrix(bl[1], eig_q1, rate1)
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:199:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L199) *style:* **Variable and function name style should be snake_case.**
```r
      P_b <-  nodeSub::slow_matrix(eig_q1, bl[1], rate1)
      ^~~
```
[R/sim_unlinked_tree.R:214:10:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L214) *style:* **Place a space before left parenthesis, except in a function call.**
```r
      for(h in 1:obs_hidden_nodes[i]) {
         ^
```
[R/sim_unlinked_tree.R:227:10:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L227) *style:* **Commented code should be removed.**
```r
        #P_b <- get_p_matrix(bl[1], eig_q1, rate1)
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:228:9:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L228) *style:* **Variable and function name style should be snake_case.**
```r
        P_b <-  nodeSub::slow_matrix(eig_q1, bl[1], rate1)
        ^~~
```
[R/sim_unlinked_tree.R:247:8:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L247) *style:* **Commented code should be removed.**
```r
      #P <- get_p_matrix(tl[i], eig_q1, rate1)
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:248:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L248) *style:* **Variable and function name style should be snake_case.**
```r
      P <-  nodeSub::slow_matrix(eig_q1, tl[i], rate1)
      ^
```
[R/sim_unlinked_tree.R:263:7:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L263) *style:* **Place a space before left parenthesis, except in a function call.**
```r
    if(check_to_extinct_tip(to)) {
      ^
```
[R/sim_unlinked_tree.R:270:42:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L270) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(phy$tip.label, as.character( (k + 1):num_nodes))
                                         ^
```
[R/sim_unlinked_tree.R:273:34:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L273) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  alignment_phydat <- phyDat.DNA( as.data.frame(res, stringsAsFactors = FALSE))
                                 ^
```
[R/sim_unlinked_tree.R:282:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L282) *style:* **Lines should not be more than 80 characters.**
```r
#' simulate a sequence assuming node substitutions are shared among the offspring
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:301:40:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L301) *style:* **Variable and function name style should be snake_case.**
```r
                                       Q1 = NULL,
                                       ^~
```
[R/sim_unlinked_tree.R:302:40:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L302) *style:* **Variable and function name style should be snake_case.**
```r
                                       Q2 = NULL,
                                       ^~
```
[R/sim_unlinked_tree.R:313:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L313) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(length(geiger::is.extinct(input_tree)) > 0) {
    ^
```
[R/sim_unlinked_tree.R:320:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L320) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(is.null(focal_alignment)) {
    ^
```
[R/sim_unlinked_tree.R:322:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L322) *style:* **Lines should not be more than 80 characters.**
```r
    focal_alignment <- nodeSub::sim_normal(input_tree, l = l, Q = Q1, bf = bf, rootseq = rootseq, rate = rate1)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:336:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L336) *style:* **Lines should not be more than 80 characters.**
```r
    proposed_alignment <- nodeSub::sim_unlinked_tree(input_tree, Q1 = Q1, Q2 = Q2,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:337:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L337) *style:* **Lines should not be more than 80 characters.**
```r
                                                     rate1 = focal_rate, rate2 = focal_rate, l = l, bf = bf, rootseq = rootseq,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:338:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L338) *style:* **Lines should not be more than 80 characters.**
```r
                                                     node_time = node_time, lambda = lambda, mu = mu)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:347:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked_tree.R#L347) *style:* **Lines should not be more than 80 characters.**
```r
  proposed_alignment <- propose_alignments(buffer = c(), focal_rate = adjusted_rate)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked.R:1:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L1) *style:* **Lines should not be more than 80 characters.**
```r
#' simulate a sequence assuming node substitutions are shared among the offspring
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_unlinked.R:13:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L13) *style:* **functions should have cyclomatic complexity of less than 15, this has 18.**
```r
sim_unlinked <- function(phy,
^
```
[R/sim_unlinked.R:14:26:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
                         Q1 = NULL,
                         ^~
```
[R/sim_unlinked.R:15:26:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
                         Q2 = NULL,
                         ^~
```
[R/sim_unlinked.R:37:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L37) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q1)) Q1 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_unlinked.R:38:20:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L38) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.null(Q2)) Q2 <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
                   ^~
```
[R/sim_unlinked.R:41:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L41) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q1)) Q1 <- Q1[lower.tri(Q1)]
                     ^~
```
[R/sim_unlinked.R:42:22:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L42) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q2)) Q2 <- Q2[lower.tri(Q2)]
                     ^~
```
[R/sim_unlinked.R:71:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L71) *style:* **Variable and function name style should be snake_case.**
```r
    P <- get_p_matrix(node_time, eig_q2, rate2)
    ^
```
[R/sim_unlinked.R:84:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L84) *style:* **Variable and function name style should be snake_case.**
```r
    P <- get_p_matrix(tl[i], eig_q1, rate1)
    ^
```
[R/sim_unlinked.R:104:42:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L104) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  label <- c(phy$tip.label, as.character( (k + 1):num_nodes))
                                         ^
```
[R/sim_unlinked.R:107:34:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/sim_unlinked.R#L107) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  alignment_phydat <- phyDat.DNA( as.data.frame(res, stringsAsFactors = FALSE))
                                 ^
```
[R/util.R:2:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/util.R#L2) *style:* **Variable and function name style should be snake_case.**
```r
fast.table <- function(data) {
^~~~~~~~~~
```
[R/util.R:20:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/util.R#L20) *style:* **Variable and function name style should be snake_case.**
```r
phyDat.DNA <- function(data) {
^~~~~~~~~~
```
[R/util.R:35:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/util.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  AC <- matrix(c(c(1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 0, 1, 1, 1),
  ^~
```
[R/util.R:108:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/util.R#L108) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
slow_matrix <- function(eig, branch_length, rate) {
^
```
[R/util.R:116:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/R/util.R#L116) *style:* **Variable and function name style should be snake_case.**
```r
  P <- matrix(NA, nrow = dim_size, ncol = dim_size)
  ^
```
[tests/testthat/test-dual_independent.R:10:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-dual_independent.R#L10) *style:* **Variable and function name style should be snake_case.**
```r
  Q_JC <- matrix(1, nrow = 4, ncol = 4)
  ^~~~
```
[tests/testthat/test-dual_parent.R:9:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-dual_parent.R#L9) *style:* **Variable and function name style should be snake_case.**
```r
  Q_JC <- matrix(1, nrow = 4, ncol = 4)
  ^~~~
```
[tests/testthat/test-dual-linked.R:9:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-dual-linked.R#L9) *style:* **Variable and function name style should be snake_case.**
```r
  Q_JC <- matrix(1, nrow = 4, ncol = 4)
  ^~~~
```
[tests/testthat/test-relative_node_time.R:22:1:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-relative_node_time.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
  obs_fraction <- ali$total_node_substitutions / (ali$total_node_substitutions + ali$total_branch_substitutions)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-sim_normal.R:20:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-sim_normal.R#L20) *style:* **Variable and function name style should be snake_case.**
```r
  Q_JC <- matrix(1, nrow = 4, ncol = 4)
  ^~~~
```
[tests/testthat/test-substitution.R:10:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L10) *style:* **Variable and function name style should be snake_case.**
```r
  Q <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
  ^
```
[tests/testthat/test-substitution.R:13:21:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q)) Q <- Q[lower.tri(Q)]
                    ^
```
[tests/testthat/test-substitution.R:29:5:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L29) *style:* **Variable and function name style should be snake_case.**
```r
    P <- nodeSub::slow_matrix(eig = eig_q,
    ^
```
[tests/testthat/test-substitution.R:84:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L84) *style:* **Variable and function name style should be snake_case.**
```r
  Q <- rep(1, lbf * (lbf - 1) / 2) # default is JC69
  ^
```
[tests/testthat/test-substitution.R:87:21:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L87) *style:* **Variable and function name style should be snake_case.**
```r
  if (is.matrix(Q)) Q <- Q[lower.tri(Q)]
                    ^
```
[tests/testthat/test-substitution.R:94:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L94) *style:* **Variable and function name style should be snake_case.**
```r
  P1 <- nodeSub::slow_matrix(eig = eig_q,
  ^~
```
[tests/testthat/test-substitution.R:98:3:](https://github.com/thijsjanzen/nodeSub/blob/8dad26e6c7b340d175be9acfecba586aa584e011/tests/testthat/test-substitution.R#L98) *style:* **Variable and function name style should be snake_case.**
```r
  P2 <- get_p_matrix(branch_length, eig_q, rate)
  ^~
```


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 662-IDAM-121-DotNetCoreU](https://teamcity.nice.org.uk/viewLog.html?buildId=63214&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Tests failed: 57, passed: 0; unable to create or deploy release. Please check the build log for details on the error. Build time: 00:01:01
### Failed tests
```
Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ClaimsServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ClaimsServiceTests.UserIsNotRegistered: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ClaimsServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ClaimsServiceTests.UserDoesNotHaveRoles: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ClaimsServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ClaimsServiceTests.UserIsReturnedInClaims: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Delete_service_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Update_service_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Get_service_with_website_and_environment: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Update_service: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Get_services: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Get_service: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Delete_service: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Create_service: <no details avaliable>

##### there are 47 more failed tests, see build details
```


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 663](https://teamcity.nice.org.uk/viewLog.html?buildId=63215&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) (new) Build time: 00:00:14


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 664](https://teamcity.nice.org.uk/viewLog.html?buildId=63216&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) Build time: 00:00:13


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit c1da710a375da21289df666bf22ec35d5cad321b.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


@glensc Could we please get 3.0.7 tagged?


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 665-IDAM-121-DotNetCoreU](https://teamcity.nice.org.uk/viewLog.html?buildId=63217&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Tests failed: 57, passed: 0; unable to create or deploy release. Please check the build log for details on the error. Build time: 00:00:58
### Failed tests
```
Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Get_website: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Update_website_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Update_website_partial: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Delete_website: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Get_websites: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Update_website: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Get_website_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Create_website: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.WebsitesServiceTests.Delete_website_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Delete_service_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.ServicesServiceTests.Update_service_that_does_not_exist: <no details avaliable>

##### there are 47 more failed tests, see build details
```


Successfully deployed to following URLs:

* https://local-notes-fyopi6sv1.now.sh
* https://local-notes.now.sh
* https://local-notes.patmoody.now.sh
* https://local-notes-git-master.patmoody.now.sh


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 666](https://teamcity.nice.org.uk/viewLog.html?buildId=63218&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) Build time: 00:00:13


Successfully deployed to following URLs:

* https://squizzy-eg0gg07q6.now.sh
* https://squizzy.now.sh
* https://squizzy.sanity-io.now.sh
* https://squizzy-git-master.sanity-io.now.sh


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 930](https://teamcity.nice.org.uk/viewLog.html?buildId=63219&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) (new) Build time: 00:00:18


;lol


監控Vhost/Config異動


:O a rare do-while!


Great !!!  👍


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 667-IDAM-121-DotNetCoreU](https://teamcity.nice.org.uk/viewLog.html?buildId=63220&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Tests failed: 57, passed: 0; unable to create or deploy release. Please check the build log for details on the error. Build time: 00:00:59
### Failed tests
```
Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Delete_single_user_with_userId: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Update_user_that_does_not_exist: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Get_roles_for_user: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Update_user_that_already_exists: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Get_users: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Find_roles: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Update_roles_for_user: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Find_users: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Create_user_where_user_email_exists_but_name_identifier_is_different_creates_new_user_record: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Get_roles_for_user_by_website: <no details avaliable>

Test collection for NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests (1): NICE.Identity.Test.UnitTests.Authorisation.WebAPI.Services.UserServiceTests.Import_users: <no details avaliable>

##### there are 47 more failed tests, see build details
```


Successfully deployed to following URLs:

* https://that-website-bxihio1rs.now.sh
* https://www.thatconference.com
* https://thatconferfence.now.sh
* https://that-website.that-conference.now.sh
* https://that-website-git-master.that-conference.now.sh


Successfully deployed to following URLs:

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* https://wj-git-master.wj9.now.sh


### Welcome to my website!!

- Name: Weiran Zhou

- Age: 19

- Education:  undergraduate in University of science and technology

- Research:


what if Zefra S/Ts in _Magical Hats_ are used as fusion material...


Successfully deployed to following URLs:

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* https://*.code2go.dev
* https://code2go.dev
* https://code2go.medienwerk.now.sh
* https://code2go-git-master.medienwerk.now.sh


Wait so this assumes that all `PlotElements` are within two parents? Because if it had just one parent that isn't a `Plot2D`, it'd do `p = p.parent` which I'm assuming becomes `null` or `undefined`, which causes an error when it checks if `p.parent` exists


PR #2910 also removes this configuration option. It's passed and waiting to get merged.


betrifft aber nur meine hinzugefügten dateien, dein zeug ist unangetastet georg


Successfully deployed to following URLs:

* https://3fe3le-web-backend-9awaa3yfc.now.sh
* https://3fe3le-web-backend.now.sh
* https://3fe3le-web-backend.flicona.now.sh
* https://3fe3le-web-backend-git-master.flicona.now.sh


Thanks! 🎉


mandelbrot where


I'll follow soon...!


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit c6d817cf16d82d47ec2416eb65ca95f252bd5ff4.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


活動報告書を作成した。


> what if Zefra S/Ts in _Magical Hats_ are used as fusion material...

Do you think the effect can activate?


comment


_leave it to konami_


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/ci-drops-8/0.1.0/data/img/visit-site-36.png)](https://pr-76-usfs.pantheonsite.io/)

Created multidev environment [pr-76](https://dashboard.pantheon.io/sites/41bd818c-c95f-4bfb-ae68-63c3075be556#pr-76) for usfs.


Successfully deployed to following URLs:

* https://landingpage-ge311ojit.now.sh


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 931-IDAM-57-Manage-user-](https://teamcity.nice.org.uk/viewLog.html?buildId=63221&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **SUCCESS**
Summary: Running Build time: 00:03:30


你不能这么锁，你得找到最新的 minor 才行。


Successfully deployed to following URLs:

* https://ktukraine-9m5qcruhr.now.sh
* https://ktukraine.kuzheldima92.now.sh
* https://ktukraine-git-master.kuzheldima92.now.sh


Successfully deployed to following URLs:

* https://espetrogithubio-s36l9c0vz.now.sh
* https://quim.now.sh
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* https://espetrogithubio-git-master.espetro.now.sh


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


I thought that it would become a little simple, that's why I have added this.


Here's how the Total is calculated.


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit d1ca9957dd3b4fb55230de03bcb1d209c6bf5a8a.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @sphuber was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


This commit is a `git revert` of a467aeb and it changes the npm ci to npm install.
But, you are right. it's better to use npm ci that use the package-lock.json files.

My intention was to create another PR to change all `npm install` to `npm ci` (engage-paella-player, engage-ui, admin-ng, etc...) once this PR is accepted, but I forgot it. :(
I will try to make the PR in the next few days


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit 1d37beb42b1c67b0d1e2bcbd5d6a92923ce3647d.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


激活码


Fixed on Dec 16, 2019 - Server certificates reconfigured 👍


TeamCity Bvcms / Build [Build 3128](https://builds.tpsdb.com/viewLog.html?buildId=10591&buildTypeId=Bvcms_Build) is now running


Isn't this changing the functionality? Before, `setHomeLinkVisibility(true)` was only being done on the else, now it will be done in both cases if I'm reading it right.


Successfully deployed to following URLs:

* https://landingpage-2uxqt26kv.now.sh


![](https://github.trello.services/images/mini-trello-icon.png) [Login page](https://trello.com/c/u7vgvj6N/11-login-page)


이웃한 두 집들 같이 털면 경찰에 걸리는 재밌는 문제네요 루프를 돌면서 그 전 집을 털지 아니면 털지 말고 다음 집을 털지 정하는 것 같내요


@JuliaRegistrator register()


Registration pull request created: [JuliaRegistries/General/6790](https://github.com/JuliaRegistries/General/pull/6790)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.7.0 -m "<description of version>" cf99e27a519ccbbf729c6ca078a8fed94a6137e5
git push origin v1.7.0
```


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit d4532539f3da0cc00d724b4ee61d7bfb2427f058.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


ceil - 버림
floor - 올림
round - 반올림


Michigan County-Level PFAS Response - Which Counties to Prioritize?


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit 83502ba879e9bd05a9abca8b0296aa701edf2224.

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@zuckschwerdt  HueEmulation has a typo in line 369 `]` instead of `)`


I just want my email on th pc back!!
Unblock emaila!!!


Could be wrong but I think this is a bug? When healing and its less than two you set the health to zero?


Hoja de estilos principal. **Sobreescribe a las anteriores hojas de estilo**, las que hay situadas encima de esta etiqueta. @EduCybul


Successfully deployed to following URLs:

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* https://dockerdemo-git-master.fydy.now.sh


D'oh - that should say "Day 3"


BTW. Where is `#define HAVE_ENGINE_LOAD_BUILTIN_ENGINES`  needed now? (at line 152).


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* https://code2go-git-master.medienwerk.now.sh


You could have both players draw in the first loop, no need for the second loop.


Successfully deployed to following URLs:

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* https://wangyugithuio-git-master.wangyu.now.sh


#dataset upload and preprocessing


Is there an unfair advantage for player 2 in this logic? What happens if the values are equal?


TeamCity Identity and Access Management / Identity - .NET Standard 2.0 Nuget (SDK) [Build 360-IDAM-208-Search-user](https://teamcity.nice.org.uk/viewLog.html?buildId=63225&buildTypeId=IdentityandAccessManagement_IdentityAuthenticationSdk) outcome was **SUCCESS**
Summary: Running Build time: 00:00:33


Successfully deployed to following URLs:

* https://kendraio-app-pzsqjeod5.now.sh
* https://dev.app.kendra.io
* https://kendraio-app.kendraio.now.sh
* https://kendraio-app-git-develop.kendraio.now.sh


Solucionado


Ignore the 10 here. It should be 1, same for the other 2 places in hier and old-object controller Reconcile() func.


TeamCity Bvcms / Build [Build 3128](https://builds.tpsdb.com/viewLog.html?buildId=10591&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Compilation error: UnitTests\CMSWebTests\CMSWebTests.csproj Build time: 00:05:59


SpliceHack removed M2_DEMON entirely, and changed all checks reliant on it to reference MH_DEMON instead, which is why none of the demons have M2_DEMON tags anymore, and all of them have MH_DEMON tags.


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 668-IDAM-208-Search-user](https://teamcity.nice.org.uk/viewLog.html?buildId=63224&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **SUCCESS**
Summary: Tests passed: 58 Build time: 00:01:21


Successfully deployed to following URLs:

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* https://odmln.now.sh
* https://odmln.com
* https://odmln.odmln.now.sh
* https://odmln-git-master.odmln.now.sh


Since you've written these lines more than once, consider refactoring into a method to avoid repeating the same code.


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* https://antonclick.zemlanin.now.sh
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Successfully deployed to following URLs:

* https://crm-frontend-jgjp8f7xy.now.sh
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* https://crm-frontend-git-master.khansen0415.now.sh


@arendst  typo in HueEmulation line 369 `]` instead of `)`


Instead of creating an array to hold these numbers, you could also use a for loop with i starting at 2.


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This is redundant, Map already contains a method for this, named GetTile(Point p), which returns the RoadTile at the given pixel coordinates.


Why not the simpler `if providerInstance.HostID() != "" {`?

Also this seems to be indented wrong. The files uses tabs and indentation method, but these lines use spaces.


It'd be better to have this logic assign the name to the card rather than derive the value each time it's printed. That way, you'd only need to do it once; in this code, every time you call displayData the value has to be derived.


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* https://code2go.dev
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* https://code2go-git-master.medienwerk.now.sh


You don't need a parameter for the score if you are assigning it to 0.


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Didn't we decide on something not SysEleven specific, so that we can contribute this upstream?


Same thing here - save the value into the card's name rather than deriving it each time.


@SSE4 @Croydon `stable\4.2.1` branch could be created on this commit, what do you think ?


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* https://github-e2e-tests-dev-alias-v2-without-alias-git-master.zeit-github-test-dev1.now.sh


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


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why this


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Moving pieces without rules
![chess-move](https://user-images.githubusercontent.com/32203353/70920822-f1159100-2001-11ea-91e7-bc99a0400681.gif)


because i enjoy to do.


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You could loop to just 26 and have each player draw each iteration, thus removing the need for the `i % 2 ==0` check.


Major Mistake (Asking for the number not repeated)


Why did you add the String " 1" in line 147 & 150?
Was it by mistake?


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The goroutine is only here in the main.go


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You can reuse `i` as a variable in this loop if you want, the `i` from the last loop is not in scope anymore after that loop ends. `g` is fine too, just wanted to let you know.


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Another comment


What if they are equal? Does this give an unfair advantage to player 2?


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yes,

1. I have checked it, and it working pretty good for add number as well. I have passed 11 as value and it transferred 5.5 to one address and the same to the second.
2. As I know an account/address can't reject the money somebody sending to it, in cryptocurrencies.


ToDo: add FiPy as well


Indentation is off here.


This commit is causing the following compile error on Ubuntu 18.04 with kernel version 5.0.0-37-generic:
eb"' -Iutil -o plugins/intel/intel-nvme.o -c plugins/intel/intel-nvme.c
plugins/intel/intel-nvme.c:704:13: error: \u2018json_lat_stats\u2019 defined but not used [-Werror=unused-function]
 static void json_lat_stats(struct intel_lat_stats *stats, int write)
             ^~~~~~~~~~~~~~
cc1: all warnings being treated as errors
Makefile:84: recipe for target 'plugins/intel/intel-nvme.o' failed
make: *** [plugins/intel/intel-nvme.o] Error 1


Seems to still work well.


I'm surprised this test is actually soo easy to write.

Did we forgot to register the listener by default as we should?

I think a good workaround would be a `XPATCH /messages?task=dropJmapFastViewProjection` that could be called just before the get, thus forcing the read miss.

Note that this operation also makes sense in a production context when the preview gets outdated (eg code update) but we don t care about performance/cost degradation. (Otherwise we could still rely on such a task only in tests...


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 669-IDAM-208-Search-user](https://teamcity.nice.org.uk/viewLog.html?buildId=63228&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **SUCCESS**
Summary: Tests passed: 59 Build time: 00:01:21


[David Taylor posted](https://review.discourse.org/t/dev-bind-to-ipv6-loopback-address-in-addition-to-ipv4-8544/7806/3):

 https://review.discourse.org/t/revert-dev-bind-to-ipv6-loopback-address-in-addition-to-ipv4-8544/7813


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@kaicode  There was no batching in your previous commit. In this version you have added batching but the batch size is nondeterministic. I have added chunks of 10k locally and will ask you to review it later.


This message was voluntarily made so that it gives a more "welcoming" feeling to players.


The flexibility comes with complexity - how does the sender specify what type of attachment to use, for each of a given list of attachments? In what format does the receiver receive the attachments?


You can have both players draw in the first loop and remove the need for the second loop.


![](https://github.trello.services/images/mini-trello-icon.png) [teste1](https://trello.com/c/oCpXE6rl/1-teste1)


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Change "reputation" to "population."


But you're listening for Exception. If a NPE, or whatever kind of exception other than the one you control gets thrown then the player will receive something he shouldn't. I'd rather remove the e.getMessage() and revert it to send the actual message.


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I'll edit so the sender provides the `data-type` value.

We could make the receiver receive all of the message, or everything except DIDComm-specific stuff that we might want to hide for interface cleanliness.


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~~~
Your `package.json` file is missing a `build` property inside the `scripts` property.
~~~


carroll-mrt (nealkruis) - x86_64-MacOS-10.13-clang: Tests Failed (1423 of 2599 tests passed, 0 test warnings)

Messages:\n
 * 2 tests had: EIO diffs.
 * 2 tests had: ESO big diffs.

Failures:\n

EnergyPlusFixture Test Summary
 * Passed: 54
 * notrun: 768

integration Test Summary
 * Passed: 672
 * Failed: 1

regression Test Summary
 * Passed: 622
 * Failed: 49

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-54.75%25-red.png)


Was there a reason to remove this? I find myself adding it back all the time.


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Summary: Running Build time: 00:03:28


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@JuliaRegistrator register()


Nice catch!!


Registration pull request created: [JuliaRegistries/General/6791](https://github.com/JuliaRegistries/General/pull/6791)

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```
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git push origin v0.3.17
```


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this is not "update-copyright.sh", consider using "$(basename $0)" instead.


> This commit is causing the following compile error on Ubuntu 18.04 with kernel version 5.0.0-37-generic:

Fixed now.


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It'd be better to have this logic assign the name to the card rather than derive the value each time it's printed. That way, you'd only need to do it once; in this code, every time you call displayData the value has to be derived.


Instead of creating an array to hold these numbers, you could also use a for loop with i starting at 2.


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You don't need a parameter for the score if you are assigning it to 0.


Added to Dev3.0.0


Same thing here - save the value into the card's name rather than deriving it each time.


[Circle has built](https://circleci.com/gh/cypress-io/cypress/215817) the `linux x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    export CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.1/linux-x64/circle-develop-bb7252b29126ad7fdda3ef6f54eadd3327289a5f-215753/cypress.zip
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Sometimes I hate C++.


Registration pull request created: [JuliaRegistries/General/6792](https://github.com/JuliaRegistries/General/pull/6792)

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does this empty class do something with the code?


I would post this question to the Protege mailing list - https://protege.stanford.edu/support.php


uploding website


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Super práce, vypadá to dobře! :+1: :1st_place_medal:

Jenom ty animace měli být obráceně, že se objeví až po najetí myší. :smile:


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You just need to add a separate dependency on Checkstyle and sync the build files from [our Java Project Template](https://gitlab.com/sosy-lab/software/java-project-template) (cf. https://github.com/sosy-lab/java-common-lib/commit/9456d2f47880778cff7c416af94a31cb2b62e814 and https://gitlab.com/sosy-lab/software/java-project-template/commit/34625531b700c1c785dd591aec25313373a1d2eb).


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Хмм. Надо бы на `.get` просто переделать. Если этих переменных нет, должно "просто работать".


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could create one method for the players name


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hi. are you there, there is some problem with the video of your course, seems to me ms does not serve your course material anymore, any fix?


The dnf command no longer strips the '\' from the beginning and caused this bug:

https://bugzilla.redhat.com/show_bug.cgi?id=1680482


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Super práce, nemám tomu v podstatě co vytknout. :+1: :1st_place_medal:

Možná akorát to písmo v horním menu mi přijde moc malé, ale to je spíše osobní názor. :slightly_smiling_face:


Сделал `.get`


TeamCity Bvcms / Build [Build 3130](https://builds.tpsdb.com/viewLog.html?buildId=10593&buildTypeId=Bvcms_Build) is now running


TeamCity Bvcms / Build [Build 3129](https://builds.tpsdb.com/viewLog.html?buildId=10592&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Tests passed: 200; exit code 4 (Step: Deploy to remote IIS (Command Line)) Build time: 00:23:58


You can go ahead, but remember that vcenter is not equal to ystart. I am not sure what the implications are.


Second Task


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You should use the types that are built into the Management SDK. Look at the line that was removed and the way it used ElementModels and use that.


修改类名等


[Circle has built](https://circleci.com/gh/cypress-io/cypress/215866) the `darwin x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

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anyone maintain this repo, the class and video seemed problematic


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Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `scripts` property.
~~~


Yes, that was it. Thanks for fixing it.


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Int main()
{
    Int i ;
( if i = 0; i < 32 i=++ )
{
  Printf(" helloHolberton/n") ;
}
 Return 0 ;
}


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ewew


ew


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[Your test job](https://github.com/JuliaLang/julia/commit/a6bf74a2f9d69f31060d6294ab0e59bf61ce26d8#commitcomment-36440024) has completed - possible new issues were detected. A full report can be found [here](https://github.com/maleadt/BasePkgEvalReports/blob/adfa530cc2662ca9abd85544d3ed41aa6d0ad95f/pkgeval-daily_2019_12_16/report.md). cc @maleadt


@JuliaRegistrator register()


Error while trying to register: "Tag with name `0.1.0` already exists and points to a different commit"


7640-Remove-a-wrong-error-message (Myoldmopar) - x86_64-MacOS-10.13-clang: Tests Failed (1423 of 2599 tests passed, 0 test warnings)

Messages:\n
 * 2 tests had: EIO diffs.
 * 2 tests had: ESO big diffs.

Failures:\n

EnergyPlusFixture Test Summary
 * Passed: 54
 * notrun: 768

integration Test Summary
 * Passed: 672
 * Failed: 1

regression Test Summary
 * Passed: 622
 * Failed: 49

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-54.75%25-red.png)


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Registration pull request created: [JuliaRegistries/General/6794](https://github.com/JuliaRegistries/General/pull/6794)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
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git push origin v0.1.1
```


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* https://crm-frontend-git-master.khansen0415.now.sh


Hi Nathan, thank you for providing this solution. I have been trying to get this to work this morning and the executable is not generating either the log or the config file. I wanted to see if you could help point me in the right direction to get this working and have it always running in the background. Thank you so much.


Super práce, takhle nějak to mělo vypadat! :+1: :1st_place_medal:

Jediné, co mi tam trochu nesedí je patička na PC verzi (viz. obrázek) :thinking:

![Screenshot from 2019-12-16 17-17-44](https://user-images.githubusercontent.com/6923249/70923414-2339e980-2028-11ea-8bfd-44ef207b4287.png)


This second try-except block is unnecessary as it is handled just like the top try-except block, and execution will resume on the same point.


Any chance this could be released? It's been over a year now since this change was merged, it would be nice to have an update gem released that includes it. We've been using a fork for the last 2 years due to this lingering issue.


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you aren't supposed to do that


could you explain *why* you revert this?


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Jediné co mi tam trochu chybí jsou ty animace _Fotogalerie_ na tabletu a PC, ale jinak super práce! :+1:


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Huh, could have sworn I cherry-picked those when I first committed to master.  Thanks.


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit 30fe956c1ac8ac55f35c9eac8d4330a5bcf3e1c5.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


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This commit has been mentioned on **Discourse Meta**. There might be relevant details there:

https://meta.discourse.org/t/502-bad-gateway-after-web-update/136221/15


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit 4b2582fb06ba1f8986f63b4f9a7800a85d1e5241.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


@darix this caused issues on systems which do not have ipv6 support. You can read more in the [meta topic](https://meta.discourse.org/t/502-bad-gateway-after-web-update/136221/15)


Don't forget to revert this before this is ready for merging.
Better yet, try to figure out why this causes a regression: as this is essential for proper network emulation.


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It can split 1.000002 ether, so why not 0.000002? The requirements weren't specific on this, but that is how you should think about it. This can be removed.


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noll


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When is it necessary for an ordinal comparison to use the current culture?


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@PraveenGandhi
I'm not sure what you tried to comment about here??


Deployment failed with the following error:

~~~
Could not find a secret by name "react_app_auth0_domain"
~~~


Doesn't work bro


delete


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1. That's because 11 ether is 11000000000000... wei and it is always divisible. If you send 11 wei, it will send 5 wei to each party and have one left over.
2. Not so. For an Externally Owned Account, it is true but a contract can revert. In fact, the default behavior for a contract is to revert. The fallback function that is there by default isn't payable, so it will revert unless the contract author as explicitly overridden the default behavior. It can and does happen. Think about the effect. It has non-obvious effects on the logic.


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Fix #158 and #155


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ok


Test


Tes


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Can this commit be fixed, please? Judging from the github UI it seems to introduce tons of tabs.


FYI, this won't compile with cscript/wscript, the correct syntax is:

```js
WScript.Echo("Hello world");
```


By mistake. By the way, I am interested in aurelia-slickgrid, not angular-slickgrid :)


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