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* https://continueintegration-b1a2ov04r.now.sh
* https://continueintegration.now.sh
* https://continueintegration.ayano.now.sh
* https://continueintegration-git-master.ayano.now.sh


[R/are_rates.R:4:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L4) *style:* **functions should have cyclomatic complexity of less than 15, this has 81.**
```r
are_rates <- function(x) {
^
```
[R/are_rates.R:16:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L16) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(length(x) == 7){
    ^
```
[R/are_rates.R:16:20:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L16) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if(length(x) == 7){
                   ^~
```
[R/are_rates.R:33:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L33) *style:* **Lines should not be more than 80 characters.**
```r
    if (x$ext_rate_max < 0.0 || x$ext_rate_max < x$ext_rate || x$ext_rate_max < x$ext_rate2 ) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/are_rates.R:33:92:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L33) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if (x$ext_rate_max < 0.0 || x$ext_rate_max < x$ext_rate || x$ext_rate_max < x$ext_rate2 ) return(FALSE)
                                                                                ^
```
[R/are_rates.R:34:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L34) *style:* **Lines should not be more than 80 characters.**
```r
    if (x$immig_rate_max < 0.0 || x$immig_rate_max < x$immig_rate || x$immig_rate_max < x$immig_rate2) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/are_rates.R:35:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L35) *style:* **Lines should not be more than 80 characters.**
```r
    if (x$clado_rate_max < 0.0 || x$clado_rate_max < x$clado_rate || x$clado_rate_max < x$clado_rate2) return(FALSE)}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/are_rates.R:35:117:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/are_rates.R#L35) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    if (x$clado_rate_max < 0.0 || x$clado_rate_max < x$clado_rate || x$clado_rate_max < x$clado_rate2) return(FALSE)}
                                                                                ^
```
[R/create_rates.R:10:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_rates.R#L10) *style:* **Lines should not be more than 80 characters.**
```r
#' @param Tpars A named list containing diversification rates considering two trait states:
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_rates.R:17:74:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_rates.R#L17) *style:* **Trailing whitespace is superfluous.**
```r
#'   \item{[6]:A numeric with the per capita transition rate with state2}
                                                                         ^
```
[R/create_rates.R:18:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_rates.R#L18) *style:* **Lines should not be more than 80 characters.**
```r
#'   \item{[7]:A numeric with the number of species with trait state 2 on mainland}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_rates.R:18:84:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_rates.R#L18) *style:* **Trailing whitespace is superfluous.**
```r
#'   \item{[7]:A numeric with the number of species with trait state 2 on mainland}
                                                                                ^
```
[R/create_rates.R:46:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_rates.R#L46) *style:* **Variable and function name style should be snake_case.**
```r
  Tpars = NULL) {
  ^~~~~
```
[R/create_rates.R:47:21:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_rates.R#L47) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (is.null(Tpars)){
                    ^~
```
[R/create_test_simulation_output.R:8:31:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                              ^
```
[R/create_test_simulation_output.R:8:43:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                                          ^
```
[R/create_test_simulation_output.R:8:47:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                                              ^
```
[R/create_test_simulation_output.R:8:58:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_test_simulation_output.R#L8) *style:* **Commas should always have a space after.**
```r
  pars_equal <- c(2.550687345,2.683454548,Inf,0.00933207,1.010073119)
                                                         ^
```
[R/create_test_trait_state_params.R:1:44:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_test_trait_state_params.R#L1) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
create_test_trait_state_params <- function(){
                                           ^~
```
[R/create_trait_state_params.R:7:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' @param clado_rate2 A numeric with the per capita cladogenesis rate with state2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_trait_state_params.R:11:70:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
#' @return list of numerical values containing trait state parameters
                                                                     ^
```
[R/create_trait_state_params.R:14:13:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L14) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/create_trait_state_params.R:30:39:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
                                      M2) {
                                      ^~
```
[R/create_trait_state_params.R:43:30:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L43) *style:* **Put spaces around all infix operators.**
```r
  testit::assert(trans_rate2 >=0.0)
                             ^~~
```
[R/create_trait_state_params.R:44:21:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L44) *style:* **Put spaces around all infix operators.**
```r
  testit::assert(M2 >=0)
                    ^~~
```
[R/create_trait_state_params.R:56:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L56) *style:* **Lines should not be more than 80 characters.**
```r
#' @param trait_state_params object to be tested if conforms to trait state parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/create_trait_state_params.R:71:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/create_trait_state_params.R#L71) *style:* **functions should have cyclomatic complexity of less than 15, this has 33.**
```r
are_trait_state_params <- function(trait_state_params) {
^
```
[R/DAISIE_area_params.R:16:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_area_params.R#L16) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
are_area_params <- function(area_params) {
^
```
[R/DAISIE_area_params.R:34:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_area_params.R#L34) *style:* **Lines should not be more than 80 characters.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:34:93:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_area_params.R#L34) *style:* **Trailing whitespace is superfluous.**
```r
#' @param proportional_peak_t value from 0 to 1 indicating where in the island's history the
                                                                                ^
```
[R/DAISIE_area_params.R:39:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_area_params.R#L39) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_area_params.R:39:83:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_area_params.R#L39) *style:* **Trailing whitespace is superfluous.**
```r
#' @return list of numerical values containing area parameters for island ontogeny
                                                                                ^
```
[R/DAISIE_check_format.R:7:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L7) *style:* **functions should have cyclomatic complexity of less than 15, this has 81.**
```r
are_rates <- function(x) {
^
```
[R/DAISIE_check_format.R:19:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L19) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  if(length(x) == 7){
    ^
```
[R/DAISIE_check_format.R:19:20:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L19) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if(length(x) == 7){
                   ^~
```
[R/DAISIE_check_format.R:36:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
    if (x$ext_rate_max < 0.0 || x$ext_rate_max < x$ext_rate || x$ext_rate_max < x$ext_rate2 ) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:36:92:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    if (x$ext_rate_max < 0.0 || x$ext_rate_max < x$ext_rate || x$ext_rate_max < x$ext_rate2 ) return(FALSE)
                                                                                ^
```
[R/DAISIE_check_format.R:37:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L37) *style:* **Lines should not be more than 80 characters.**
```r
    if (x$immig_rate_max < 0.0 || x$immig_rate_max < x$immig_rate || x$immig_rate_max < x$immig_rate2) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:38:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
    if (x$clado_rate_max < 0.0 || x$clado_rate_max < x$clado_rate || x$clado_rate_max < x$clado_rate2) return(FALSE)}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:38:117:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L38) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    if (x$clado_rate_max < 0.0 || x$clado_rate_max < x$clado_rate || x$clado_rate_max < x$clado_rate2) return(FALSE)}
                                                                                ^
```
[R/DAISIE_check_format.R:52:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L52) *style:* **Lines should not be more than 80 characters.**
```r
  if (island_ontogeny != "const" && island_ontogeny != "linear" && island_ontogeny != "beta") return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:65:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L65) *style:* **Lines should not be more than 80 characters.**
```r
  if (island_ontogeny != 0 && island_ontogeny != 1 && island_ontogeny != 2) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:87:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    if (!"island_age" %in% names(simulation_outputs[[n_replicate]][[1]])) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:89:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L89) *style:* **Lines should not be more than 80 characters.**
```r
        !"not_present_type1" %in% names(simulation_outputs[[n_replicate]][[1]]))) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:92:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L92) *style:* **Lines should not be more than 80 characters.**
```r
    if (!"stt_all" %in% names(simulation_outputs[[n_replicate]][[1]])) return(FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:94:7:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L94) *style:* **Commented code should be removed.**
```r
    # if (!"branching_times" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:95:7:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L95) *style:* **Commented code should be removed.**
```r
    # if (!"stac" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_check_format.R:96:7:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_check_format.R#L96) *style:* **Commented code should be removed.**
```r
    # if (!"missing_species" %in% names(simulation_outputs)) return(FALSE)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:10:17:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L10) *warning:* **no visible global function definition for ‘DAISIE_convert_to_classic_plot’**
```r
  DAISIE_list = DAISIE_convert_to_classic_plot(DAISIE_output,Tpars = NULL)
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:11:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
#' @param Tpars1 A named list containing diversification rates considering two trait states:
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:11:18:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L11) *warning:* **no visible global function definition for ‘DAISIE_convert_to_classic_plot’**
```r
  TRASIE_list1 = DAISIE_convert_to_classic_plot(TRASIE_output1,Tpars = Tpars1)
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:12:18:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L12) *warning:* **no visible global function definition for ‘DAISIE_convert_to_classic_plot’**
```r
  TRASIE_list2 = DAISIE_convert_to_classic_plot(TRASIE_output2,Tpars = Tpars2)
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:13:18:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L13) *warning:* **no visible global function definition for ‘DAISIE_convert_to_classic_plot’**
```r
  TRASIE_list3 = DAISIE_convert_to_classic_plot(TRASIE_output3,Tpars = Tpars3)
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:19:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L19) *style:* **Lines should not be more than 80 characters.**
```r
#'   \item{[7]:A numeric with the number of species with trait state 2 on mainland}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:21:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L21) *style:* **Lines should not be more than 80 characters.**
```r
#' @param Tpars2 A named list containing diversification rates considering two trait states:
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:22:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L22) *style:* **Lines should not be more than 80 characters.**
```r
#' @param Tpars3 A named list containing diversification rates considering two trait states:
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:29:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L29) *style:* **Variable and function name style should be snake_case.**
```r
  DAISIE_output,
  ^~~~~~~~~~~~~
```
[R/DAISIE_compare.R:30:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L30) *style:* **Variable and function name style should be snake_case.**
```r
  TRASIE_output1,
  ^~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:31:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  TRASIE_output2,
  ^~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:32:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L32) *style:* **Variable and function name style should be snake_case.**
```r
  TRASIE_output3,
  ^~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:33:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L33) *style:* **Variable and function name style should be snake_case.**
```r
  Tpars1,
  ^~~~~~
```
[R/DAISIE_compare.R:34:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L34) *style:* **Variable and function name style should be snake_case.**
```r
  Tpars2,
  ^~~~~~
```
[R/DAISIE_compare.R:35:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  Tpars3){
  ^~~~~~
```
[R/DAISIE_compare.R:35:9:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L35) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  Tpars3){
        ^~
```
[R/DAISIE_compare.R:37:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L37) *style:* **Variable and function name style should be snake_case.**
```r
  DAISIE_list = DAISIE_convert_to_classic_plot(DAISIE_output,Tpars = NULL)
  ^~~~~~~~~~~
```
[R/DAISIE_compare.R:37:15:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L37) *style:* **Use <-, not =, for assignment.**
```r
  DAISIE_list = DAISIE_convert_to_classic_plot(DAISIE_output,Tpars = NULL)
              ^
```
[R/DAISIE_compare.R:37:62:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L37) *style:* **Commas should always have a space after.**
```r
  DAISIE_list = DAISIE_convert_to_classic_plot(DAISIE_output,Tpars = NULL)
                                                             ^
```
[R/DAISIE_compare.R:38:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L38) *style:* **Variable and function name style should be snake_case.**
```r
  TRASIE_list1 = DAISIE_convert_to_classic_plot(TRASIE_output1,Tpars = Tpars1)
  ^~~~~~~~~~~~
```
[R/DAISIE_compare.R:38:16:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L38) *style:* **Use <-, not =, for assignment.**
```r
  TRASIE_list1 = DAISIE_convert_to_classic_plot(TRASIE_output1,Tpars = Tpars1)
               ^
```
[R/DAISIE_compare.R:38:64:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L38) *style:* **Commas should always have a space after.**
```r
  TRASIE_list1 = DAISIE_convert_to_classic_plot(TRASIE_output1,Tpars = Tpars1)
                                                               ^
```
[R/DAISIE_compare.R:39:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L39) *style:* **Variable and function name style should be snake_case.**
```r
  TRASIE_list2 = DAISIE_convert_to_classic_plot(TRASIE_output2,Tpars = Tpars2)
  ^~~~~~~~~~~~
```
[R/DAISIE_compare.R:39:16:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L39) *style:* **Use <-, not =, for assignment.**
```r
  TRASIE_list2 = DAISIE_convert_to_classic_plot(TRASIE_output2,Tpars = Tpars2)
               ^
```
[R/DAISIE_compare.R:39:64:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L39) *style:* **Commas should always have a space after.**
```r
  TRASIE_list2 = DAISIE_convert_to_classic_plot(TRASIE_output2,Tpars = Tpars2)
                                                               ^
```
[R/DAISIE_compare.R:40:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L40) *style:* **Variable and function name style should be snake_case.**
```r
  TRASIE_list3 = DAISIE_convert_to_classic_plot(TRASIE_output3,Tpars = Tpars3)
  ^~~~~~~~~~~~
```
[R/DAISIE_compare.R:40:16:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L40) *style:* **Use <-, not =, for assignment.**
```r
  TRASIE_list3 = DAISIE_convert_to_classic_plot(TRASIE_output3,Tpars = Tpars3)
               ^
```
[R/DAISIE_compare.R:40:64:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L40) *style:* **Commas should always have a space after.**
```r
  TRASIE_list3 = DAISIE_convert_to_classic_plot(TRASIE_output3,Tpars = Tpars3)
                                                               ^
```
[R/DAISIE_compare.R:41:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L41) *style:* **Commented code should be removed.**
```r
  # TRASIE_list4 = DAISIE_convert_to_classic_plot(TRASIE_output4,Tpars = Tpars4)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:43:8:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L43) *style:* **Use <-, not =, for assignment.**
```r
  stt1 = DAISIE_list[["all_species"]]
       ^
```
[R/DAISIE_compare.R:44:8:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L44) *style:* **Use <-, not =, for assignment.**
```r
  stt2 = TRASIE_list1[["all_species"]]
       ^
```
[R/DAISIE_compare.R:45:8:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L45) *style:* **Use <-, not =, for assignment.**
```r
  stt3 = TRASIE_list2[["all_species"]]
       ^
```
[R/DAISIE_compare.R:46:8:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L46) *style:* **Use <-, not =, for assignment.**
```r
  stt4 = TRASIE_list3[["all_species"]]
       ^
```
[R/DAISIE_compare.R:47:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L47) *style:* **Commented code should be removed.**
```r
  # stt5 = TRASIE_list4[["all_species"]]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:50:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L50) *style:* **Commented code should be removed.**
```r
  # DAISIE_stt = stt1$stt_average[, "Total"]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:51:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L51) *style:* **Commented code should be removed.**
```r
  # TRASIE_notrans_stt = stt2$stt_average[, "Total"]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:52:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L52) *style:* **Commented code should be removed.**
```r
  # TRASIE_trans1_stt = stt3$stt_average[, "Total"]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:53:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L53) *style:* **Commented code should be removed.**
```r
  # TRASIE_trans2_stt = stt4$stt_average[, "Total"]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:54:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L54) *style:* **Commented code should be removed.**
```r
  # TRASIE_trans3_stt = stt5$stt_average[, "Total"]
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:56:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L56) *style:* **Variable and function name style should be snake_case.**
```r
  Data_total<- data.frame(stt1 = stt1$stt_average[, "Total"],
  ^~~~~~~~~~
```
[R/DAISIE_compare.R:56:13:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L56) *style:* **Put spaces around all infix operators.**
```r
  Data_total<- data.frame(stt1 = stt1$stt_average[, "Total"],
           ~^
```
[R/DAISIE_compare.R:60:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L60) *style:* **Variable and function name style should be snake_case.**
```r
  Data_nonendemic <- data.frame(stt1 = stt1$stt_average[, "nI"],
  ^~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:64:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
  Data_Endemic <- data.frame(stt1 = stt1$stt_average[, "Endemic"],
  ^~~~~~~~~~~~
```
[R/DAISIE_compare.R:68:3:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L68) *style:* **Variable and function name style should be snake_case.**
```r
  Data <- list(Data_total, Data_Endemic, Data_nonendemic)
  ^~~~
```
[R/DAISIE_compare.R:70:6:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L70) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  for(i in 1:length(Data)){
     ^
```
[R/DAISIE_compare.R:70:12:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L70) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  for(i in 1:length(Data)){
           ^
```
[R/DAISIE_compare.R:70:26:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L70) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  for(i in 1:length(Data)){
                         ^~
```
[R/DAISIE_compare.R:74:7:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L74) *style:* **Commented code should be removed.**
```r
    # Data[[i]]$diff1_5 <- Data[[i]]$stt5 - Data[[i]]$stt1
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:76:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Lines should not be more than 80 characters.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:76:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Variable and function name style should be snake_case.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
    ^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:76:46:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                             ^
```
[R/DAISIE_compare.R:76:51:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                  ^
```
[R/DAISIE_compare.R:76:53:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                    ^
```
[R/DAISIE_compare.R:76:89:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                                                ^
```
[R/DAISIE_compare.R:76:96:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                                                ^
```
[R/DAISIE_compare.R:76:100:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                                                ^
```
[R/DAISIE_compare.R:76:107:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Commas should always have a space after.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                                                ^
```
[R/DAISIE_compare.R:76:113:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L76) *style:* **Put spaces around all infix operators.**
```r
    Data_differ_quantile <- apply(Data[[i]][,5:7],2,function(x) round(stats::quantile(x,c(0.25,0.5,0.75)),digits=2))
                                                                                ~^~
```
[R/DAISIE_compare.R:77:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L77) *style:* **Lines should not be more than 80 characters.**
```r
    rownames(Data_differ_quantile)[1:3] <-c("differ_down","differ_median","differ_up")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:77:41:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L77) *style:* **Put spaces around all infix operators.**
```r
    rownames(Data_differ_quantile)[1:3] <-c("differ_down","differ_median","differ_up")
                                        ^~~
```
[R/DAISIE_compare.R:77:59:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L77) *style:* **Commas should always have a space after.**
```r
    rownames(Data_differ_quantile)[1:3] <-c("differ_down","differ_median","differ_up")
                                                          ^
```
[R/DAISIE_compare.R:77:75:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L77) *style:* **Commas should always have a space after.**
```r
    rownames(Data_differ_quantile)[1:3] <-c("differ_down","differ_median","differ_up")
                                                                          ^
```
[R/DAISIE_compare.R:78:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L78) *style:* **Variable and function name style should be snake_case.**
```r
    Data_t <- data.frame(t(Data_differ_quantile))
    ^~~~~~
```
[R/DAISIE_compare.R:80:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L80) *style:* **Lines should not be more than 80 characters.**
```r
    pairs_name <- c("DAISIE vs. TRASIE1","DAISIE vs. TRASIE2","DAISIE vs. TRASIE3")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:80:42:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L80) *style:* **Commas should always have a space after.**
```r
    pairs_name <- c("DAISIE vs. TRASIE1","DAISIE vs. TRASIE2","DAISIE vs. TRASIE3")
                                         ^
```
[R/DAISIE_compare.R:80:63:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L80) *style:* **Commas should always have a space after.**
```r
    pairs_name <- c("DAISIE vs. TRASIE1","DAISIE vs. TRASIE2","DAISIE vs. TRASIE3")
                                                              ^
```
[R/DAISIE_compare.R:82:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    pairs_CI <- paste("(", Data_t$differ_down, " ~ ", Data_t$differ_up, ")", sep = "")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:82:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L82) *style:* **Variable and function name style should be snake_case.**
```r
    pairs_CI <- paste("(", Data_t$differ_down, " ~ ", Data_t$differ_up, ")", sep = "")
    ^~~~~~~~
```
[R/DAISIE_compare.R:83:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Lines should not be more than 80 characters.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:83:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Variable and function name style should be snake_case.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
    ^~~~~~~~
```
[R/DAISIE_compare.R:83:36:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Put spaces around all infix operators.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
                                  ~^~
```
[R/DAISIE_compare.R:83:48:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Commas should always have a space after.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
                                               ^
```
[R/DAISIE_compare.R:83:60:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Put spaces around all infix operators.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
                                                          ~^~
```
[R/DAISIE_compare.R:83:74:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Commas should always have a space after.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
                                                                         ^
```
[R/DAISIE_compare.R:83:82:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L83) *style:* **Put spaces around all infix operators.**
```r
    Data_str <- data.frame(pairs_na=pairs_name,pairs_median=pairs_median,pairs_CI=pairs_CI)
                                                                                ~^~
```
[R/DAISIE_compare.R:84:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L84) *style:* **Variable and function name style should be snake_case.**
```r
    Data_str <- as.matrix(Data_str)
    ^~~~~~~~
```
[R/DAISIE_compare.R:85:5:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L85) *style:* **Variable and function name style should be snake_case.**
```r
    Data_str <- rbind(c(NA,"Median","Interquartile ranges"),Data_str)
    ^~~~~~~~
```
[R/DAISIE_compare.R:85:28:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L85) *style:* **Commas should always have a space after.**
```r
    Data_str <- rbind(c(NA,"Median","Interquartile ranges"),Data_str)
                           ^
```
[R/DAISIE_compare.R:85:37:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L85) *style:* **Commas should always have a space after.**
```r
    Data_str <- rbind(c(NA,"Median","Interquartile ranges"),Data_str)
                                    ^
```
[R/DAISIE_compare.R:85:61:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L85) *style:* **Commas should always have a space after.**
```r
    Data_str <- rbind(c(NA,"Median","Interquartile ranges"),Data_str)
                                                            ^
```
[R/DAISIE_compare.R:86:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L86) *style:* **Lines should not be more than 80 characters.**
```r
    # jpeg(file = "results_Value_1.jpg",width =2000,height = 1800,units = "px",res =300)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:86:7:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L86) *style:* **Commented code should be removed.**
```r
    # jpeg(file = "results_Value_1.jpg",width =2000,height = 1800,units = "px",res =300)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:88:21:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L88) *style:* **Commas should always have a space after.**
```r
               c(NA,Data_t$differ_median),
                    ^
```
[R/DAISIE_compare.R:89:21:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L89) *style:* **Commas should always have a space after.**
```r
               c(NA,Data_t$differ_down),
                    ^
```
[R/DAISIE_compare.R:90:21:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L90) *style:* **Commas should always have a space after.**
```r
               c(NA,Data_t$differ_up),
                    ^
```
[R/DAISIE_compare.R:92:20:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L92) *style:* **Put spaces around all infix operators.**
```r
               xlog=FALSE,
                  ~^~
```
[R/DAISIE_compare.R:96:32:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L96) *style:* **Put spaces around all infix operators.**
```r
                            box="#D55E00"),
                              ~^~
```
[R/DAISIE_compare.R:100:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L100) *style:* **Lines should not be more than 80 characters.**
```r
               txt_gp = forestplot::fpTxtGp(ticks = grid::gpar(cex = 0.5), xlab = grid::gpar(cex = 0.7), cex = 0.7),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:102:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L102) *style:* **Lines should not be more than 80 characters.**
```r
               xlab="Differences in assessment indicators between relevant pairs"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_compare.R:102:20:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L102) *style:* **Put spaces around all infix operators.**
```r
               xlab="Differences in assessment indicators between relevant pairs"
                  ~^~
```
[R/DAISIE_compare.R:104:7:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_compare.R#L104) *style:* **Commented code should be removed.**
```r
    # dev.off()
      ^~~~~~~~~
```
[R/DAISIE_create_island.R:5:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L5) *style:* **Lines should not be more than 80 characters.**
```r
#' @param island_spec matrix with species on island (state of system at each time point)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:7:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L7) *style:* **Lines should not be more than 80 characters.**
```r
#' @param Tpars A named list containing diversification rates considering two trait states:
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:15:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
#'   \item{[7]:A numeric with the number of species with trait state 2 on mainland}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:20:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L20) *style:* **Lines should not be more than 80 characters.**
```r
#' @return list with the island information, composed stt table, branching times of extant
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:22:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L22) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_island <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:22:44:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L22) *style:* **Trailing whitespace is superfluous.**
```r
DAISIE_create_island <- function(stt_table,
                                           ^
```
[R/DAISIE_create_island.R:23:44:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L23) *style:* **Trailing whitespace is superfluous.**
```r
                                 totaltime,
                                           ^
```
[R/DAISIE_create_island.R:24:46:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L24) *style:* **Trailing whitespace is superfluous.**
```r
                                 island_spec,
                                             ^
```
[R/DAISIE_create_island.R:26:34:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L26) *style:* **Variable and function name style should be snake_case.**
```r
                                 Tpars,
                                 ^~~~~
```
[R/DAISIE_create_island.R:28:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L28) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:41:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L41) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:43:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:44:27:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L44) *style:* **Commas should always have a space after.**
```r
  if (length(island_spec[,1]) == 0) {
                          ^
```
[R/DAISIE_create_island.R:45:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L45) *style:* **Trailing whitespace is superfluous.**
```r

^~
```
[R/DAISIE_create_island.R:46:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L46) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:59:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L59) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:67:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L67) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:69:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L69) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:71:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L71) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "branching time (BP)"] <- totaltime - as.numeric(island_spec[, "branching time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:72:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L72) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "Colonisation time (BP)"] <- totaltime - as.numeric(island_spec[, "Colonisation time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:73:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L73) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:82:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:82:65:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L82) *style:* **Only use double-quotes.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
                                                                ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:87:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:87:58:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L87) *style:* **Only use double-quotes.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:87:104:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L87) *style:* **Commas should always have a space after.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:89:37:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L89) *style:* **Only use double-quotes.**
```r
        if (class(subset_island) != 'matrix') {
                                    ^~~~~~~~
```
[R/DAISIE_create_island.R:95:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L95) *style:* **Lines should not be more than 80 characters.**
```r
                                                      island_spec = subset_island,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:97:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L97) *style:* **Lines should not be more than 80 characters.**
```r
                                                      keep_final_state = keep_final_state)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:106:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L106) *style:* **Lines should not be more than 80 characters.**
```r
                       taxon_list = island_clades_info, island_spec = island_spec)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:114:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L114) *style:* **Variable and function name style should be snake_case.**
```r
DAISIE_create_island_trait <- function(stt_table,
^~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:118:34:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L118) *style:* **Variable and function name style should be snake_case.**
```r
                                 Tpars,
                                 ^~~~~
```
[R/DAISIE_create_island.R:119:58:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L119) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
                                 keep_final_state = FALSE){
                                                         ^~
```
[R/DAISIE_create_island.R:121:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L121) *style:* **Lines should not be more than 80 characters.**
```r
  ### if there are no species on the island branching_times = island_age, stac = 0, missing_species = 0
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:122:27:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L122) *style:* **Commas should always have a space after.**
```r
  if (length(island_spec[,1]) == 0) {
                          ^
```
[R/DAISIE_create_island.R:123:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L123) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:124:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L124) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:145:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L145) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:147:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L147) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:149:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L149) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "branching time (BP)"] <- totaltime - as.numeric(island_spec[, "branching time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:150:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L150) *style:* **Lines should not be more than 80 characters.**
```r
    island_spec[, "Colonisation time (BP)"] <- totaltime - as.numeric(island_spec[, "Colonisation time (BP)"])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:151:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L151) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:152:21:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L152) *style:* **Use <-, not =, for assignment.**
```r
    mainland_ntotal = mainland_n + Tpars$M2
                    ^
```
[R/DAISIE_create_island.R:153:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L153) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/DAISIE_create_island.R:159:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L159) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:160:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L160) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:162:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L162) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:164:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L164) *style:* **Lines should not be more than 80 characters.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:164:65:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L164) *style:* **Only use double-quotes.**
```r
      colonists_present <- sort(as.numeric(unique(island_spec[, 'Mainland Ancestor'])))
                                                                ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:165:60:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L165) *style:* **Trailing whitespace is superfluous.**
```r
      number_colonists_present <- length(colonists_present)
                                                           ^
```
[R/DAISIE_create_island.R:166:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L166) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~
```
[R/DAISIE_create_island.R:167:35:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L167) *style:* **Trailing whitespace is superfluous.**
```r
      island_clades_info <- list()
                                  ^~
```
[R/DAISIE_create_island.R:169:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L169) *style:* **Lines should not be more than 80 characters.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:169:58:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L169) *style:* **Only use double-quotes.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                         ^~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:169:104:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L169) *style:* **Commas should always have a space after.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:169:105:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L169) *style:* **Trailing whitespace is superfluous.**
```r
        subset_island <- island_spec[which(island_spec[, 'Mainland Ancestor'] == colonists_present[i]),]
                                                                                ^
```
[R/DAISIE_create_island.R:170:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L170) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:171:37:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L171) *style:* **Only use double-quotes.**
```r
        if (class(subset_island) != 'matrix') {
                                    ^~~~~~~~
```
[R/DAISIE_create_island.R:175:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L175) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/DAISIE_create_island.R:177:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L177) *style:* **Lines should not be more than 80 characters.**
```r
                                                      island_spec = subset_island,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:179:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L179) *style:* **Lines should not be more than 80 characters.**
```r
                                                      keep_final_state = keep_final_state)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/DAISIE_create_island.R:185:1:](https://github.com/rsetienne/DAISIE/blob/441a40339eb1f140b852274144817479922443f2/R/DAISIE_create_island.R#L185) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```


This option is already defined, See [line 130](https://github.com/kamlaz/zephyr/commit/16aea0895a78338f6caf81c5770732e54f3387ff#diff-407f379191d37cce1be6afa15fa80738L130).


less is really much more convenient, recent and standard than more... Do you really have a good reason to use more by default? Otherwise, I'd suggest that you set your `PAGER` variable


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You should not remove copyright notice. Just add the new one.


а игнорируете почему?)) еще раз прочитайте задание к этому методу. внимательно прочитайте :)


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Site


There is no need to add such option.


I don't like that `less` clears the screen when exiting, I want the whole info to remain printed so I can go back to it as one consistent, scrollable page. Is there a way to achieve this with `less`?


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Good job! Just a little suggestion for you, instead of adding more condition to make your `if` statement more strict, you should start with the strictest condition. <br>


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I don't think this will work properly with this blank line in the middle.


This means that method call on a separate line will be reported as error (no one read the returned value). Is this intended?


I think that after all coveryty changes it would be good to make new release.


correct, it would at least be an array with single empty string.


@KateKimi Ага, вижу. Ну тогда как все таки это задание сделать в одним срезом, а не двумя? Как объединить в одно это два действия:
```
b = x[1:-1]
c = b[::-1]
``` ?


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@James-ZHANG, shouldn't this be 'manifest_funcs = curr->next' in the else case?


this is my second commit


I would say yes, it is intended. It's a repository method to fetch a record from the database. It does not really make sense to call this method but not using the result.


Such option is already defined in `zephyr/kernel/Kconfig`.


I have just tried to install `pygenometracks`  via conda and it tries to install maplotlib 3.1.2 though the requirement here says 3.1.1 .I have checked the meta.yaml of bioconda and it is `>3.0` there. This need to be fixed. We need to either change it here or there. I am testing it now since there is an open issue about not showing the scales on the intensity bar. We might need a have minor release for that fix.


same as above.


Нужно исправить: здесь обязательно нужно  добавить return чтобы остановить исполнение кода на этом моменте


@KateKimi не вижу, чтобы ты считала чколько раз ты делишь. Ты просто выводишь на экран остаток. Ты даже `a = 0` ввела, но не используешь


но ничего не поменялось)


A bit strange why is that not handled by the routing_node `handle_selected_operation`, is it not doing the right thing, and in what way.


yes, in this case, when query contains non-default projection. fixed.


Nada que ver el reporte con ese codigo que solo hace zooms en la capa activa con PyQGIS


fixed.


Why do you need it? There is only one type of QSPI peripheral in Nordic chips.


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Looking good, just a discussion in there and should be good to go :rocket:


I had intentionally put this clause as a filter because of the number of criteria can be very high. We will have to change this back again before we upgrade to Elasticsearch 7. It may be better to break up the relationship changes into chunks of 10K or so and make a series of smaller queries.
See https://github.com/IHTSDO/snowstorm/commit/d43d33b800dbd0b6584f51370aa3f5e682a66342


wtf is dit gap


Sorry, i was looking for solution for httpclient connection pool, then i got your source code, but I tried to find where did you use LimitedPool class in your project, but there wasn't any founds. Could you please give me your comment where did you use LimitedPool class??


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Everything was going so well, until I had to start computing intersections..


super code


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@kay-kim lgtm!


Good job! Please check the comments I left in your code.


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There should be a deadline for commit for `joinGame()`


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수정사항 확인했습니다 pull 받을게여 수고하셨습니다.


@JuliaRegistrator register()


I'll have a look, but I don't even know how to scroll up with more...


Registration pull request created: [JuliaRegistries/General/6488](https://github.com/JuliaRegistries/General/pull/6488)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.1.2 -m "<description of version>" b0922e2cec2dd6bc0f8f6576dce953c3d5cc607f
git push origin v0.1.2
```


This should be `get_context_modules()`!


Thanks for updating this @DrIanPhilips but I think the Preface was removed:

Transport is inherently geographic. All transport involves movement from one place on Earth to another, whether it's by walking, flying or telecomunications. Geographic Information Systems (GIS) therefore have great potential to assist transport researchers and professionals. QGIS is a powerful GIS package that has become popular worldwide due to its wide range of features (including via hundreds of community contributed plugins), intuitive interface, and accessibility. QGIS is free and open source, meaning that anyone can download, install and even contribute to it.


I'd say -X and -F should do the right thing: https://superuser.com/questions/106637/less-command-clearing-screen-upon-exit-how-to-switch-it-off


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You cannot remove ....


files have been added Group_08


Thanks Jacob, missed that one


@LeilyR we need a strict version pinning for our testing, agreed. But do you really think we need this in production? It should still work, isn't it?


Hi @zap263,
It's a patch to fix this https://github.com/magento/magento2/issues/21364
If you have the same issue, you can use this patch.
To apply it please check https://devdocs.magento.com/guides/v2.3/comp-mgr/patching.html
GitHubGitHub
REST API multiselect attribute BC break between 2.1.8 and 2.3.0 · Issue #21364 · magento/magento2
Preconditions () Magento 2.3.0 Steps to reproduce () Have a multiselect attribute Update the product data through the REST API and pass an array of IDs as a value for this multiselect attribute E...
devdocs.magento.comdevdocs.magento.com
Applying patches | Magento 2 Developer Documentation
Magento 2 Developer Documentation.


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Deployment failed with the following error:

~~~
The property `type` is not allowed in now.json when using Now 2.0 – please remove it.
~~~


- If nnn is started with -e session and in this session detail
    mode is enabled/active, hitting key d to disable (at first)
    does not work. Hitting it again works. Seems internal state
    does not reflect that detail mode is already active and so
    nnn at first tries to enable instead of disable detail mode.


 - Following the example in the manpage I tried to filter for
    '\.mkv' but got "regex error: 5" right after entering the
    backslash. If I continue typing, everything works. But I'd
    guess not only a few users would stop there and consider
    filtering to be broken.


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This seems to be an undesired change.


Collaborator: Review for this commit was created. [Link to review](http://b5abc1a7.eu.ngrok.io/ui#review:id=8)


Collaborator cannot find remote user mapping for user that pushed commits, review created by system administrator


モデルを変更しましたが、エラーが出てます


`JuliaRegistrator register()`


This is still wrong and a complete break in security, you are sending over the wire, in the clear, your session keys.


`@JuliaRegistrator register()`


I'm on it


Registration pull request created: [JuliaRegistries/General/6489](https://github.com/JuliaRegistries/General/pull/6489)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.1.1 -m "<description of version>" 642f4a5cb1338e1953228c7d26667d4d72ae3ed5
git push origin v0.1.1
```


check  the running top quark mass at mw scale


You will not find it in this repository. As the Core SDK has been rewritten from scratch and split into this new repository. What you are looking for you may find in https://github.com/commercetools/commercetools-dotnet-sdk/blob/master/commercetools.NET/Common/LimitedPool.cs


@chhex : that implies that we need to have apg-patch-service-common in the local repository with the correct version. Shouldn't we adapt our "gradle-common" in order to add an addition remote repository?


^^ This is a comma splice; grammatically it should be a semicolon.


specify protein headers by declaring the canonical protein headers per header type (e.g novel/var).
example:
'known:ENSMUSP;decoy_ENSMUSP'
or
'known:ENSMUSP;decoy_ENSMUSP|novel:nov_;decoy_nov'
or
known:ENSMUSP;decoy_ENSMUSP;refmut_;refmut_decoy|var:mut_;decoy_mut_'

it's also backward compatible.


you are trying to reply back to the server the target_info unmodified ??
What field is missing or wrong in the client_traget_info ?


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Ha ok. Just built one with both options (they are both useful!) and it works just like I was hoping!


@jgomezdans , was removing the `~` from `mask` in both calculations intended? Because the logical result is not the same as before.


This will modify the sample for all boards. I guess it was not intended.


Hi! were you able to run this repository and get any meaningful results on kitti?
Thanks!
Z.


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ajout


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the game is in Ruby, not C#


shouldn't it be a bit better with `exit(1)` ?


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hoge


I have just tested it and the good news is that it worked with 3.1.2.  I have already wrote to the user that we cannot reproduce their issue and gave him some instruction on how to install the last version and so on. I know that we need to restrict it for testing, now i am just wondering if environment.yaml needs to be consistent with what we have in meta.yaml or can it be left as it is?


The name of this option is too generic (same goes for other ones defined here). You should use QSPI in its name.


Sure.


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Issue7187 (dareumnam) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-IntegrationCoverage-Debug: OK (675 of 675 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-68.45%25-green.png)


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@electron2302

I got it now to work with puppeteer using headless chrome. PhantomJs is not an option anymore due to them discontinuing development (see https://github.com/ariya/phantomjs/issues/15344) and therefore not supporting newest JS syntax.

The current approach needs to install a lot of libraries before being able to run the tests and takes basically forever (see https://github.com/puppeteer/puppeteer/blob/master/docs/troubleshooting.md#running-puppeteer-in-docker).
We should think abound using another base image that already includes puppeteer and headless chrome (like https://hub.docker.com/r/buildkite/puppeteer) in order to reduce run times.

The tests that fail at the moment should be fixed in the next sprint. They fail because some dependencies are not included in the auto generated tests.


。mmm


zrób funkcje z tego


Done: 6aab040118d6ae7c7633ed88c6d90a819c949c69


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**嗷嗷**### 大_逼逼_


commeny


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(I can't react to the commit, so I will leave this comment and react to it to show appreciation for the commit itself.)


@LeilyR the issue with the scales reminds me:  #79 solved by #88 ...
@bgruening how is the meta.yml generated?


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Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @lucventurini was added to conda-forge. Welcome to conda-forge!
  Go to https://github.com/orgs/conda-forge/invitation see your invitation.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


Glad this is useful! :+1:


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![](https://github.trello.services/images/mini-trello-icon.png) [(1) Ability to record attributes used in defect detection such as method type, tool and number of defects detected [?]](https://trello.com/c/njR2NR6x/58-1-ability-to-record-attributes-used-in-defect-detection-such-as-method-type-tool-and-number-of-defects-detected)


大###


自对弈结果:

Sum	8107
Black	4573	56.40%
White	3192	39.37%
Draw	342	421


信号量同步


ㄚㄚ


@kevinmarrec  something is still missing. I have tried v0.5.0 and without
```
    babel: {
      plugins: [
        "@babel/plugin-proposal-nullish-coalescing-operator",
        "@babel/plugin-proposal-optional-chaining"
      ],
}
```
 in nuxt config it doesn't work


odwróć warunek


Also the LimitedPool was only an intermediate solution which was soon after replaced with the RestClient https://github.com/commercetools/commercetools-dotnet-sdk/pull/62


Syntax error with python2.7
```
  File "/usr/local/lib/python2.7/dist-packages/py_trees/behaviour.py", line 61
    name: str=common.Name.AUTO_GENERATED):
        ^
SyntaxError: invalid syntax
```


Adding links to mini-grant funder websites


@holzschu You probably forgot to add an entry for llc into `commandDictionary.plist`.


QR cose


如果 VALUE_EACH_PIECE_INHAND = 4，则胜率下降 1.2%

Sum	6051
Black	3345	5528
White	2445	4040
Draw	261	431

Sum	6281
Black	3615	5755
White	2421	3854
Draw	245	390


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I did, but I forgot to commit the change. Done now.


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As of this update it seems I'm getting duplicate relations in the References view. Is this a known issue?


In the following we are assuming that bin value is always one:
https://github.com/danieldeidda/STIR/blob/17dd471eb4a359f3f67958c825588b6bf0a2b26c/src/listmode_buildblock/LmToProjData.cxx#L478

the correct code should be:
`bin.set_bin_value(bin.get_bin_value()/get_compression_count(bin));`

when doing this `Total number of counts`is almost almost equal to `Total number of counts in the bootsrapped data`


@husayt You're right, sounds that `dist` of **0.5.0** and doesn't contain the `babel` setup


    :x: Test Failed: va/tests/accessibility

composer va:test:accessibility

```
audited 183 packages in 1.225s
found 2 low severity vulnerabilities
  run `npm audit fix` to fix them, or `npm audit` for details

> axe_tests@1.0.0 test /var/aegir/projects/cms/pr747
> node ./tests/accessibility/aXeAccessibilityCheck.js

!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov 0
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/sections  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/page  = 1
[ { id: 'duplicate-id',
    impact: 'minor',
    tags: [ 'cat.parsing', 'wcag2a', 'wcag411' ],
    description: 'Ensures every id attribute value is unique',
    help: 'id attribute value must be unique',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/duplicate-id?application=webdriverjs',
    nodes: [ [Object], [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/landing_page  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/documentation_page  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/event  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/health_care_local_facility  = 1
[ { id: 'label',
    impact: 'critical',
    tags:
     [ 'cat.forms',
       'wcag2a',
       'wcag332',
       'wcag131',
       'section508',
       'section508.22.n' ],
    description: 'Ensures every form element has a label',
    help: 'Form elements must have labels',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/label?application=webdriverjs',
    nodes:
     [ [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/health_care_region_detail_page  = 1
[ { id: 'duplicate-id',
    impact: 'minor',
    tags: [ 'cat.parsing', 'wcag2a', 'wcag411' ],
    description: 'Ensures every id attribute value is unique',
    help: 'id attribute value must be unique',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/duplicate-id?application=webdriverjs',
    nodes: [ [Object], [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/health_care_region_page  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/office  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/outreach_asset  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/person_profile  = 1
[ { id: 'duplicate-id-aria',
    impact: 'critical',
    tags: [ 'cat.parsing', 'wcag2a', 'wcag411' ],
    description:
     'Ensures every id attribute value used in ARIA and in labels is unique',
    help: 'IDs used in ARIA and labels must be unique',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/duplicate-id-aria?application=webdriverjs',
    nodes: [ [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/press_release  = 1
[ { id: 'aria-allowed-attr',
    impact: 'critical',
    tags: [ 'cat.aria', 'wcag2a', 'wcag412' ],
    description: 'Ensures ARIA attributes are allowed for an element\'s role',
    help: 'Elements must only use allowed ARIA attributes',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/aria-allowed-attr?application=webdriverjs',
    nodes: [ [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/regional_health_care_service_des  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/news_story  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr747.ci.cms.va.gov/node/add/support_service  = 0
[]
!!!  VIOLATION TYPES FOUND: 5 PROCESS EXITED WITH CODE 1  !!!
> npm install --only=production
> npm test
Tue, 10 Dec 2019 15:05:55 GMT axe-webdriverjs deprecated Error must be handled as the first argument of axe.analyze. See: #83 at tests/accessibility/aXeAccessibilityCheck.js:44:14
Tue, 10 Dec 2019 15:05:58 GMT axe-webdriverjs deprecated Error must be handled as the first argument of axe.analyze. See: #83 at tests/accessibility/aXeAccessibilityCheck.js:56:42
Failed to inject axe-core into one of the iframes!
Failed to inject axe-core into one of the iframes!
npm ERR! Test failed.  See above for more details.
Script npm test handling the va:test:accessibility event returned with error code 1
```

- **On:** devshop.cms.va.gov
- **In:** 01:18


close! you could use `white-space: pre` to preserve original linebreaks - that's what the `<pre>` HTML element uses that we used a few classes before. but even for that, you need to add those line breaks in the HTML as well, like this:

```
<p>
CSS
is
awesome
</p>
```

see https://developer.mozilla.org/en-US/docs/Web/CSS/white-space


Nvm, i've **0.4.0** locally for now, trying **0.5.0**


Test passed!


I see much the same code repeated three times - could that be moved to a public static method somewhere?


Modified to check render of new info


Successfully deployed to following URLs:

* https://paulkinlanme-kl66llo7y.now.sh
* https://paul.kinlan.me
* https://paulkinlanme.kinlan.now.sh
* https://paulkinlanme-git-main.kinlan.now.sh


Works for me without any additional `babel` alteration :

![image](https://user-images.githubusercontent.com/25272043/70541607-9c889680-1b67-11ea-9e88-a5f145fb8803.png)


:white_check_mark: All Rules (5 / 5) Passed

      :crown: Good job! this pull request is aligned with your organization's best practices!

      :point_right: You can review your rules settings at smart policy management :point_left:

:point_right: click here to view a full list of the events :point_left:


added a screenshot


y


@jkeenan Why did you leave “The” in? It makes no sense there … does it?


develop (punyasloka95) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: OK (1915 of 1915 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


webpack打包生成的


Successfully deployed to following URLs:

* https://formik-docs-9alodogz4.now.sh
* https://formik-docs.now.sh
* https://formik-docs.jared.now.sh
* https://formik-docs-git-master.jared.now.sh


Successfully deployed to following URLs:

* https://digital-library-pg5086vgu.now.sh
* https://digital-library.now.sh
* https://digital-library.long-kim.now.sh
* https://digital-library-git-master.long-kim.now.sh


Successfully deployed to following URLs:

* https://sanoculis-kh7ghm6eq.now.sh
* https://sanoculis.now.sh
* https://sanoculis.ofersarid.now.sh
* https://sanoculis-git-master.ofersarid.now.sh


![](https://github.trello.services/images/mini-trello-icon.png) [(1) Quality indicator record for each tool in use (DCI, DII, ADCI, ADII) [?]](https://trello.com/c/MZaQF9Cu/61-1-quality-indicator-record-for-each-tool-in-use-dci-dii-adci-adii)


Small note: we'll need to remove this once Velocity is fixed since, even though it's not a problem, it's still not nice to have too any parenthesis).


I'd have put a TODO and a comment to explain that


`rails db:reseed` du coup?


![](https://github.trello.services/images/mini-trello-icon.png) [(1) Definition of method for determining DCI [?]](https://trello.com/c/omIN9bTg/59-1-definition-of-method-for-determining-dci)


By checking winner balance before and after?


![](https://github.trello.services/images/mini-trello-icon.png) [(1) Definition of method for determining DII [0.5]](https://trello.com/c/geXwYMDr/64-1-definition-of-method-for-determining-dii-05)


What's the reason to create a free function instead of having the predicate return the value? You could make the variable `private`.


![](https://github.trello.services/images/mini-trello-icon.png) [(1) Definition of method for determining ADCI [?]](https://trello.com/c/4A7Vw9ka/62-1-definition-of-method-for-determining-adci)


Suggestion for test name so that it follows our documented testing best practice: `evaluateWhenExpressionFollowedByTwoPipes()`


1) header и main отличаются размерами, на них есть доп класс для конкретно этой страницы
2) блок с действиями юзера (ссылка на профиль и выйти) в header был в другом репозитории, сделал здесь отдельно, он есть только на этой странице


![](https://github.trello.services/images/mini-trello-icon.png) [(1) Definition of method for determining ADII [?]](https://trello.com/c/OIzcD9ZD/57-1-definition-of-method-for-determining-adii)


Successfully deployed to following URLs:

* https://assistant-ddsl4nord.now.sh
* https://assistant.now.sh
* https://assistant.ooh.now.sh
* https://assistant-git-master.ooh.now.sh


Here you need to provide the full path to the `cardano-cli` -- as in other examples.


1 test


Yeah I'm not using runtime and have it working in `dev`


Successfully deployed to following URLs:

* https://digital-library-9tkuy8do3.now.sh
* https://digital-library.now.sh
* https://digital-library.long-kim.now.sh
* https://digital-library-git-master.long-kim.now.sh


Successfully deployed to following URLs:

* https://formik-docs-bcv46aypr.now.sh
* https://formik-docs.now.sh
* https://formik-docs.jared.now.sh
* https://formik-docs-git-master.jared.now.sh


nice work!

I would suggest committing more often, at least once per exercise, to make it easier to see the progress later
(and to make it easier for me to review :) )


develop (punyasloka95) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


develop (punyasloka95) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (11 of 11 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png)


![](https://github.trello.services/images/mini-trello-icon.png) [JavaDoc for RelationalOperator class](https://trello.com/c/5aLEo5Od/86-javadoc-for-relationaloperator-class)


zajebisty kommicik mo0rdo


Is this enabled in Safari? Let's enable it via Features


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


Successfully deployed to following URLs:

* https://tietokantojen-perusteet-k20-material-iqi8lxy40.now.sh
* https://tikape-k20.now.sh
* https://tietokantojen-perusteet-k20-material.mooc.now.sh
* https://tietokantojen-perusteet-k20-material-git-master.mooc.now.sh


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 641](https://teamcity.nice.org.uk/viewLog.html?buildId=63037&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) (new) Build time: 00:00:25


Successfully deployed to following URLs:

* https://zuzin-96l32mmtl.now.sh
* https://zuzin.now.sh
* https://zuzin.wargt.now.sh
* https://zuzin-git-master.wargt.now.sh


This appears to fix #8385


4 space indent


what does this help with?


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Taskcluster-GitHub attempted to create a task for this event with the following scopes:

```
[
  "assume:repo:github.com/JohanLorenzo/fenix:branch:master",
  "queue:route:checks",
  "queue:scheduler-id:taskcluster-github"
]
```

The expansion of these scopes is not sufficient to create the task, leading to the following:

Client ID static/taskcluster/github does not have sufficient scopes and is missing the following scopes:

```
queue:route:index.garbage.project.mobile.fenix.v2.master.revision.da603aa02ae1fbafa117bcc540b301a9cc695177.taskgraph.decision
```

This request requires the client to satisfy the following scope expression:

```
{
  "AllOf": [
    "assume:repo:github.com/JohanLorenzo/fenix:branch:master",
    "queue:route:checks",
    "queue:route:index.garbage.project.mobile.fenix.v2.master.revision.da603aa02ae1fbafa117bcc540b301a9cc695177.taskgraph.decision",
    {
      "AnyOf": [
        {
          "AllOf": [
            "queue:scheduler-id:mobile-level-1",
            {
              "AnyOf": [
                "queue:create-task:highest:mobile-1/decision",
                "queue:create-task:very-high:mobile-1/decision",
                "queue:create-task:high:mobile-1/decision",
                "queue:create-task:medium:mobile-1/decision",
                "queue:create-task:low:mobile-1/decision",
                "queue:create-task:very-low:mobile-1/decision",
                "queue:create-task:lowest:mobile-1/decision"
              ]
            }
          ]
        },
        {
          "AnyOf": [
            "queue:create-task:mobile-1/decision",
            {
              "AllOf": [
                "queue:define-task:mobile-1/decision",
                "queue:task-group-id:mobile-level-1/L9-GNISBR8miMxjRbA2t4A",
                "queue:schedule-task:mobile-level-1/L9-GNISBR8miMxjRbA2t4A/L9-GNISBR8miMxjRbA2t4A"
              ]
            }
          ]
        }
      ]
    }
  ]
}
```

---

* method:     createTask
* errorCode:  InsufficientScopes
* statusCode: 403
* time:       2019-12-10T15:24:14.615Z

</details>


Nisam napravio da klijent i server razmjene kljuceve sesije tokom uspostave veze (treba prilikom poziva Connect funkcije da klijent posalje svoj secret key serveru i server da uradi isto kada primi kljuc od klijenta)