chillerElecEIRrefactor (mitchute) - Win64-Windows-10-VisualStudio-16: OK (2581 of 2602 tests passed, 17 test warnings)

Messages:\n
 * 38 tests had: BND diffs.
 * 36 tests had: MDD diffs.
 * 38 tests had: MTD diffs.
 * 36 tests had: RDD diffs.
 * 21 tests had: Table big diffs.
 * 18 tests had: MTR small diffs.
 * 2 tests had: EDD diffs.
 * 4 tests had: ESO small diffs.

Failures:\n

regression Test Summary
 * Passed: 650
 * Failed: 21

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.19%25-yellow.png)


@nfeske: please add to staging


Remove the `== NULL` comparison, and use the `uint64_t` type.


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Есть вариант: "... не станет говорить об этом" что меняет оттенок фразы на более чопорный.


There should be no space before an assignment operator, and `else` should be on a line of its own:
```c++
  block->modify_clock+= len;
}
else
{
```


### :x: 1 / 3 Rules Failed

## i-Sight

      :point_right: You can review your rules settings at smart policy management :point_left:

:point_right: click here to view a full list of the events :point_left:


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Please try to avoid whitespace-only changes.


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I continued to search for similar problems and found [1]. According to [2] `esModule is true by default` starting with version 5.0.0.

Could it be, that this (breaking change) didn't work in 5.0.0 and has been fixed with 5.0.1? According to [3] this was just a rename from `esModules` to `esModule`.

[1] https://stackoverflow.com/questions/59114479/when-i-using-file-loader-and-html-loader-in-webpack-the-src-attr-of-image-gonna
[2] https://github.com/webpack-contrib/file-loader/releases/tag/v5.0.0
[3] https://github.com/webpack-contrib/file-loader/pull/346


This does not make sense logically. Line 71 is basically ignored. Is '\r\n' a character in itself, or do you mean '\r' and '\n'? If the latter, you can remove line 71, otherwise you should change line 72 to "course = course.strip("\r\n").


Puzzle `138-a3700a91` discovered in   [`src/index.tsx`](  https://github.com/zorko-io/zorko-designer/blob/master/src/index.tsx)   and submitted as #141. Please, remember that the puzzle was not   necessarily added in this particular commit. Maybe it was added earlier, but   we discovered it only now.


Ref https://github.com/codenameone/CodenameOne/issues/2994


Failed to assign a domain to your deployment due to the following error:

~~~
The domain jonathansum.github.io is not verfied and cannot be used as an alias.
~~~

([Learn more](https://zeit.co/777jonathansum/jonathansumgithubio/10ydy0ya6) or [visit](https://jonathansumgithubio-10ydy0ya6.now.sh) the non-aliased deployment)


Seems like this should be AsyncCallback.


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What about:

`
"/cernbox/mobile/remote.php/webdav"
`


> I'm surprised you need that actually. We execute revapi only on legacy-oldcore specifically to avoid this.

Yes I was actually surprised too but I got the error in the CI... Now I got the issue when building extension-script, so maybe it's related to the order of build: i.e. extension-script being build before legacy?


TeamCity Identity and Access Management / identity-hostedpages [Build 1172](https://teamcity.nice.org.uk/viewLog.html?buildId=64445&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) is now running


无


It should be a small s in `date('Y-m-d H:i:s', $ts);`.


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IBM Cloud [toolchain](https://cloud.ibm.com/devops/toolchains/72634922-12da-4e63-96ed-6e917e2d4a04?env_id=ibm%3Ayp%3Aeu-gb "staging-trisha-do"): [Delivery Pipeline](https://cloud.ibm.com/devops/pipelines/31f2c60e-8705-4362-b24f-23fea0249d2b "staging-trisha-do") deployed [staging-trisha-do](https://github.com/trisha16/staging-trisha-do/releases/tag/deploy-ibm-yp-eu-gb-trisha.cba1722-ict.gnu.ac.in-dev-20200115-045730 "deploy-ibm-yp-eu-gb-trisha.cba1722-ict.gnu.ac.in-dev-20200115-045730") to [dev](https://console.bluemix.net/apps/3823b76d-0cbb-411e-9013-4a38bf3a7f71?env_id=ibm:yp:eu-gb "ibm:yp:eu-gb:trisha.cba1722@ict.gnu.ac.in:dev"), including this commit


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This condition in ImageMagick is actually [>= 90](https://github.com/ImageMagick/ImageMagick/blob/fea123a061e6dea54df8c04e5256f2dce995fbbc/coders/jpeg.c#L2638).


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# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Should homebrew rollback?


Can you check if FTL is going to run with this condition? I'm not sure if it is going to do so.


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We are going to need to pass in an "option" object or individual params for the speakeasy.generateSecret(opt) options. This will help the user know what site the 2fa belongs. The issuer and name gets displayed in the authenticator.
```
Speakeasy.generateSecret({
      issuer: 'Company Name',
      name: `Company Name (Jaison Green)`
    })
```


>
>
> `ScriptExtender::TextBuffer` - cannot be used as it is a temporary buffer.

I'm not really sure what you mean. sprintf_lite() and SubString() in the same file also use/return the buffer for script functions, what's the difference between them and `cstrdup`?


**Описание недостатка**
Длинный метод two_players_mode из issue #2

**Примененный метод рефакторинга**
Выделение метода. Я уже знаю, как разверну архитектуру приложения и рефакторю к другому паттерну, однако, чтобы выделить основные повторяющиеся компоненты кода, мне необходимо выделить во всех длинных методах общие шаги. Одним из способов для этого является, собственно, выделение метода. После того, как основные жирные методы пройдут такой рефакторинг, мне будет понятно, какую функциональность можно обобщить, вынести  в класс и т.п.

**Результат применения**
Засчет уменьшения количества букОв, читать код стало проще. Он все еще странновато процедурный, но теперь лучше видны шаги и их последовательность.

[Скриншот прогнанных тестов](https://i.imgur.com/pdHc0px.png)


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#what
chat-spaceのREADMEにDB設計を記述
#why
chat-spaceのDBを作成するため


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Ok


для данного экстеншна localStorage бэкграунда может быть достаточным, но так же посмотри в сторону https://developer.chrome.com/apps/storage - его преимущества там написаны.


Thanks a lot for making this Pre-Commit check, by the way!


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0 will be marked as infinity (∞).


Deploy preview for _website_ ready!

Built with commit e3b439e55df5a6e0e711c6eecd9e521e6b5ab0d6

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This function is not required


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Представь, у тебя произошла ошибка и ты читаешь логи с продакшена. Как ты поймеш по этому тексту ошибки какие входные данные привели к ошибке? Нужно в меседж передавать данные по которым можна установить что упало, почему. Тут ты сам должен подумать что именно, как по мне ЮзерАкаунт айди нужно и данные по платежу


not working, while i have created database but found error Cannot GET /api/admin.. help plz


7451_Documentation_2019b (jmarrec) - x86_64-MacOS-10.13-clang: OK (2602 of 2602 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


    :x: Test Failed: va/deploy/1-cache

drush $DRUSH_ALIAS cr

```
Command "@pr827.ci.cms.va.gov" is not defined.
```

- **On:** devshop.cms.va.gov
- **In:** 0.712s


    :x: Test Failed: va/deploy/2-update

drush $DRUSH_ALIAS updatedb --yes

```
Command "@pr827.ci.cms.va.gov" is not defined.
```

- **On:** devshop.cms.va.gov
- **In:** 0.295s


    :x: Test Failed: va/deploy/3-config

drush $DRUSH_ALIAS cim --yes && drush $DRUSH_ALIAS cr

```
Command "@pr827.ci.cms.va.gov" is not defined.
```

- **On:** devshop.cms.va.gov
- **In:** 0.315s


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./www


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Thank you ! shame on me for having been lazy and just asking, for sure I could have googled myself :-).


TeamCity Identity and Access Management / identity-hostedpages [Build 1186](https://teamcity.nice.org.uk/viewLog.html?buildId=64518&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) is now running


TeamCity Identity and Access Management / identity-hostedpages [Build 1186](https://teamcity.nice.org.uk/viewLog.html?buildId=64518&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) (new) Build time: 00:00:20


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If passing in literals you have to pass them in as _("literal")


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Deployment failed with the following error:

~~~
Couldn't parse JSON file /tmp/ocNOYiJs6VmGFQiu8Pc6yqmE/repo/now.json.
~~~


You said a "different crash". First time you posted a stack trace not a log. And then for a "different crash" I don't have any details.


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You might want to add `__pycache__` and `shell` to `gitignore`.

* `__pycache__` contains the python bytecode of your modules, generated as you load the modules in the interpretor, so there is no need to keep that bytecode in the repository.
* `shell` contains some shell completion stuff for `exercism`, and as such it is extraneous to this repository.

Otherwise, everything looks perfect. Good start. You did a really good job organizing the structure of this repository. Very tidy.

4/5


I understand.
Even so, the skins must be adapted all if or if, so I decided to change it at once, as is the OCT default skin now and my commit the Messagebox screens are clean in debug, it was to leave a cleaner code Without the need for pixmap, Multipixmap encompasses all pixmap, we do the same with less code .... I rely on openvision has its standard ....


@tanzoniteblack - Thank you for getting back to me so quickly. That's super helpful. The issue that I'm running into is an odd interaction between `clj-http`, `re-graph`, and `re-frame`.  I think the issue is that `re-graph` implicitly relied on the previous bug. I'll raise the issue over there.


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yeah no problem ,
you just have to install this:

https://code.visualstudio.com/

then download this ( just copy the link to your web browser search bar and
hit enter as if you're going to a web adress and it will start downloading
the ZIP File):
https://github.com/instabot-py/instabot.py/archive/master.zip

after u have both of these two things just launch Visual Studio Code.

In Visual Studio Code go to "File" next "open File" and look for the
extracted folder of the content of the zipped file so when you download the
zipped file you should extract what's in it to a place you will remember
like your desktop for instance.

once you have done this send me some screen shots for me to tell u the next
steps

heliocorreadearaujo <notifications@github.com> escreveu no dia sexta,
17/01/2020 à(s) 22:54:

> 1- can you help me install and confirm instabot.py please?
>
> Em sex., 17 de jan. de 2020 às 19:47, Helio correa de araujo <
> araujosondas@gmail.com> escreveu:
>
> >
> > I can't even install "instabot.py". 1 - i have installed windows 10 2 - I
> > have installed python 3.8.0 3- but when I have to install the instabot it
> > doesn't even start
> >
> > Em sex., 17 de jan. de 2020 às 18:06, shadow400500 <
> > notifications@github.com> escreveu:
> >
> >> yes I can help you out
> >>
> >> —
> >> You are receiving this because you commented.
> >> Reply to this email directly, view it on GitHub
> >> <
> https://github.com/instabot-py/instabot.py/commit/4850b9ab1bb8f3ec931494164fe9f369e2af2b1b?email_source=notifications&email_token=AL545ONG4XV72WENDTEUGXLQ6IMUFA5CNFSM4KHH4QFKYY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBDEWQP#commitcomment-36854287
> >,
> >> or unsubscribe
> >> <
> https://github.com/notifications/unsubscribe-auth/AL545OPH3QQDSDI675TWMN3Q6IMUFANCNFSM4KHH4QFA
> >
> >> .
> >>
> >
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/instabot-py/instabot.py/commit/4850b9ab1bb8f3ec931494164fe9f369e2af2b1b?email_source=notifications&email_token=AOJIAFDQRYZPCQUKQCL4C4TQ6IZJDA5CNFSM4KHH4QFKYY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBDEX6V#commitcomment-36855765>,
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Deploy preview for _website_ ready!

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@elguero: I build it just for this case, where no functional package was available for me and I just missed my monitor. So I am to busy to take care of it. I didn't had time to spend on it to make it better, but I did it with purpose to build it only once for this patched version.

Actually it is not my ideal :) this is how usually packages are build in Travis but I did it locally :) (you just need to have working docker)

I think main issue here is that author waiting (or just doesn't have a time) till these patches are implemented in stable release of EVDI so he doesn't need to modify .spec files specially for this release. But I could be wrong.


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Good idea!

If I understand it correctly it's add-hoc access to settings and observing
changes to those settings which is the concern. I think I have a clean
solution involving a separate settings classes and an observer pattern on
SettingsService.

I didn't have time to experiment with it last night but that's the plan for
tonight! :)

Rick

On Fri, 17 Jan 2020, 09:16 justoke, <notifications@github.com> wrote:

> Sounds like a plan. The drop-in library is an excellent idea - this will
> certainly make it easier. React is pretty steep learning and if you don't
> have to go there to use the library, all the better. I'm going to see how
> the Flutter web goes as this might be a viable way to build mobile app
> and/or web app for the actual application.
>
> I'll work on the OTA Update and MQTT feature and add it to my forked
> esp8266 repo and we can try get things aligned. I'll keep it clean in terms
> of config - by bringing together the config changes you introduced here, to
> accommodate the settings for the MQTTClient. I'll keep my bespoke
> hostnames/ids and the like out of this. I'm still considering how to avoid
> talking to a God class.
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/rjwats/esp8266-react/commit/14f50c1e31b079699323f05a7dc1623a3d2dd261?email_source=notifications&email_token=AAKE4VFLX64MJM572JYUULTQ6FZQBA5CNFSM4KIEE3M2YY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBDELXB#commitcomment-36843233>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AAKE4VDJ2FJIYBYI564576LQ6FZQBANCNFSM4KIEE3MQ>
> .
>


This version can't build in mingw gcc and windows environment.
It will due to `Invalid setting 'gcc' is not a valid 'settings.compiler' value` error.

See:
https://github.com/bincrafters/community/issues/1075
https://github.com/conan-community/community/issues/303


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Successfully deployed to following URLs:

* https://email2sms-bvg7o0ra2.now.sh
* https://email2sms.now.sh
* https://email2sms.tobyallen.now.sh
* https://email2sms-git-master.tobyallen.now.sh


Successfully deployed to following URLs:

* https://xkcd-why-4i7lv40z7.now.sh
* https://xkcd-why.now.sh
* https://xkcd-why.kidonng.now.sh
* https://xkcd-why-git-master.kidonng.now.sh


/like
changed it to HBK :)


hey, and now it's back to LBD :)


I'm trying with ports-gcc, i totally forgot about this :)


Deployment failed with the following error:

~~~
Cannot mix legacy routes with new keys:
~~~


what is that ?


@JuliaRegistrator register


Error while trying to register: Unexpected error in registration


Copy of this build can be found at
https://www.mewbuilds.com/build/4b207ff58534ce1cb622aeee3ada26f171dff1d6/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmRdwrZ8x7ugREk4jafGXKiYUJyXMKaptxUXZEWJCWNhxB
                       Virus Total analysis
                       https://www.virustotal.com/file/cee3a09305cfe8b244dcc74a0b91a718d90f0a59b8372fe4da8b7dffdbd0594d/analysis/1579117857/


Successfully deployed to following URLs:

* https://chemicaltools-web-hkjxjq4jk.now.sh
* https://chemicaltools-web.njzjz.now.sh
* https://chemicaltools-web-git-master.njzjz.now.sh


✅ [Jenkins job](https://jenkins.internalx.com/job/macios/job/xcode11.3/37/display/redirect) (on internal Jenkins) succeeded

✅ [Build succeeded](https://jenkins.internalx.com/job/macios/job/xcode11.3/37//console)
✅ Packages:
* [xamarin.ios-13.10.0.18.pkg (Not notarized)](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/package/xamarin.ios-13.10.0.18.pkg)
* [xamarin.mac-6.10.0.18.pkg (Not notarized)](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/package/xamarin.mac-6.10.0.18.pkg)
* [xamarin.ios-13.10.0.18.pkg (Notarized)](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/package/notarized/xamarin.ios-13.10.0.18.pkg)
* [xamarin.mac-6.10.0.18.pkg (Notarized)](https://bosstoragemirror.blob.core.windows.net/wrench/jenkins/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/package/notarized/xamarin.mac-6.10.0.18.pkg)

✅ [API Diff (from stable)](http://xamarin-storage/jenkins/xamarin-macios/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/jenkins-results/api-diff/index.html)
✅ [API Diff (from PR only)](http://xamarin-storage/jenkins/xamarin-macios/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/jenkins-results/apicomparison/api-diff.html) (no change)
✅ [Generator Diff](http://xamarin-storage/jenkins/xamarin-macios/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/jenkins-results/generator-diff/index.html) (no change)
✅ [Test run succeeded](http://xamarin-storage/jenkins/xamarin-macios/xcode11.3/8441a3303c733e0a5b06e71f4a66802aeb0511da/37/jenkins-results/tests/index.html)


Hey


Successfully deployed to following URLs:

* https://achkouyancom-3lysxi6yf.now.sh
* https://achkouyan.now.sh
* https://www.achkouyan.com
* https://franck.achkouyan.com
* https://achkouyan.com
* https://franck.i-s.dev
* https://achkouyancom.a-franck.now.sh
* https://achkouyancom-git-master.a-franck.now.sh


Successfully deployed to following URLs:

* https://photo-easy-portfolio-cmpvj2f9v.now.sh
* https://photo-easy-portfolio.now.sh
* https://jose-photo-portfolio.now.sh
* https://photo-easy-portfolio.gabrielvial.now.sh
* https://photo-easy-portfolio-git-master.gabrielvial.now.sh


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit ecc3c85237e1ad760d79ff0b95685c77195a02a7.

You can try again later or [upgrade](https://zeit.co/teams/roleypoly/settings/plan) your plan.


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit 6fea021be57bbb17d0fdc3bcde0935f0ec179fdc.

You can try again later or [upgrade](https://zeit.co/teams/roleypoly/settings/plan) your plan.


fixes #40


Successfully deployed to following URLs:

* https://davidbaileycodes-mapg6qkns.now.sh
* https://davidbailey.codes
* https://www.davidbailey.codes
* https://baileyis.cool
* https://www.baileyis.cool
* https://davidbaileycodes.davidbailey.now.sh
* https://davidbaileycodes-git-master.davidbailey.now.sh


Надеюсь, у вас есть для этого волшебное сочетание клавиш.
0,05


A brief description of how to run the online version of the TopTrumps GAME.


Successfully deployed to following URLs:

* https://ticket-reservation-system-l990z1xbq.now.sh
* https://ticket-reservation-system.now.sh
* https://ticket-reservation-system.kyleshovbb.now.sh
* https://ticket-reservation-system-git-master.kyleshovbb.now.sh


Спасибо!


Successfully deployed to following URLs:

* https://pszx-qxdarjywx.now.sh
* https://pszx.tech
* https://pablosz.tech
* https://pszx.pablosz.now.sh
* https://pszx-git-master.pablosz.now.sh


hvacVRFRefactor (mitchute) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-IntegrationCoverage-Debug: OK (676 of 677 tests passed, 0 test warnings)

Failures:\n

integration Test Summary
 * Passed: 676
 * Timeout: 1

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.85%25-yellow.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-68.43%25-green.png)


On Thu, 16 Jan 2020 02:59:28 -0800
Adriano dos Santos Fernandes <notifications@github.com> wrote:

> > Yes, but sed and some other GNU utilities are. In the pack of them that
> > coming with GIT there is unzip.exe as well.
>
> I would not have a problem to use unzip if it was declared to be necessary
> for the build, but it (nor any package containing it) was not so far.
>

But you yourself have now declared it as necessary for the build!

It is theoretically possible to build firebird without the posix toolkit from
a git windows install, but in practice the posix tool kit is there, so let's
use it.

In this case there really is no need to add a new dependency to the build
process.

Paul
--

Paul Reeves
http://www.ibphoenix.com
Supporting users of Firebird


Successfully deployed to following URLs:

* https://code2go-ocuj6qm8d.now.sh
* https://*.code2go.dev
* https://code2go.dev
* https://code2go.medienwerk.now.sh
* https://code2go-git-master.medienwerk.now.sh


this will be problematic for OS packaging where a compiled afl++ needs to run on various x86 processors.
I will quickly fix this.
(that is why the CFLAGS with -O3 etc. is ?=)


Successfully deployed to following URLs:

* https://tegans-coffee-m8r7xhg3y.now.sh
* https://tegans-coffee.now.sh
* https://tegans-coffee.teganrauh.now.sh
* https://tegans-coffee-git-master.teganrauh.now.sh


Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `scripts` property.
~~~


Super excited to see this sample app being reworked and revived! 👍 👍 👍


Successfully deployed to following URLs:

* https://currency-converter-hxaho8mkb.now.sh
* https://currency-converter.now.sh
* https://currency-converter.akepinski.now.sh
* https://currency-converter-git-master.akepinski.now.sh


TeamCity MAS / MAS [Build 1.1.0.611](https://teamcity.nice.org.uk/viewLog.html?buildId=64548&buildTypeId=Mas_Mas) outcome was **FAILURE**
Summary: Artifacts size 187.1 KB is 95% different from 3.7 MB in build #1.1.0.567-MAS-150-WeeklyEmailN (new); exit code 1 (Step: Set build number (Command Line)) (new) Build time: 00:00:16


Successfully deployed to following URLs:

* https://hysequa-offline-c42xkukd0.now.sh
* https://hysequa-offline.now.sh
* https://hysequa.info53.now.sh
* https://hysequa-offline.info53.now.sh
* https://hysequa-offline-git-master.info53.now.sh


Successfully deployed to following URLs:

* https://mscott-portfolio-f0855gvif.now.sh
* https://mscott-portfolio.now.sh
* https://mscott-portfolio.mscott-portfolio.now.sh
* https://mscott-portfolio-git-master.mscott-portfolio.now.sh


TeamCity MAS / MAS [Build 1.1.0.612-MAS-150-WeeklyEmailN](https://teamcity.nice.org.uk/viewLog.html?buildId=64549&buildTypeId=Mas_Mas) outcome was **FAILURE**
Summary: Tests passed: 12; intergrationTests/MailControllerTests.cs(83,35): error CS7036: There is no argument given that corresponds to the required formal parameter 'logger' of 'MailController.MailController(IMailService, IContentService, IViewRenderer, IBa... Build time: 00:01:07


You're right, this will skip NetSuite PO with issue. It's normal behavior and we do the same in create PO sync.


[R/convertMsp2Spectra-data.R:23:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra-data.R#L23) *style:* **Lines should not be more than 80 characters.**
```r
#' http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/MSMS-GNPS-Curated-Neg.msp
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/convertMsp2Spectra.R:33:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L33) *style:* **Variable and function name style should be camelCase.**
```r
    mzInd_1 <- grep("PRECURSORMZ:", msp[, 1])
    ^~~~~~~
```
[R/convertMsp2Spectra.R:34:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L34) *style:* **Variable and function name style should be camelCase.**
```r
    mzInd_2 <- grep("EXACTMASS:", msp[, 1])
    ^~~~~~~
```
[R/convertMsp2Spectra.R:47:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L47) *style:* **Variable and function name style should be camelCase.**
```r
    NAMES <- as.character(msp[nameInd,  2])
    ^~~~~
```
[R/convertMsp2Spectra.R:48:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L48) *style:* **Variable and function name style should be camelCase.**
```r
    MZ <- as.numeric(as.character(msp[mzInd, 2]))
    ^~
```
[R/convertMsp2Spectra.R:49:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L49) *style:* **Variable and function name style should be camelCase.**
```r
    NUMPEAKS <- as.numeric(as.character(msp[numpeaksInd, 2]))
    ^~~~~~~~
```
[R/convertMsp2Spectra.R:54:34:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L54) *style:* **Trailing whitespace is superfluous.**
```r
    if (numEntries != length(MZ))
                                 ^
```
[R/convertMsp2Spectra.R:58:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L58) *style:* **Variable and function name style should be camelCase.**
```r
    RT <- if (length(rtInd) == numEntries) {
    ^~
```
[R/convertMsp2Spectra.R:64:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L64) *style:* **Variable and function name style should be camelCase.**
```r
    spN_l <- vector("list", numEntries)
    ^~~~~
```
[R/convertMsp2Spectra.R:87:12:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L87) *warning:* **no visible global function definition for ‘Spectra’**
```r
    spl <- Spectra(spN_l, elementMetadata = DataFrame(names = NAMES))
           ^~~~~~~
```
[R/convertMsp2Spectra.R:87:45:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/convertMsp2Spectra.R#L87) *warning:* **no visible global function definition for ‘DataFrame’**
```r
    spl <- Spectra(spN_l, elementMetadata = DataFrame(names = NAMES))
                                            ^~~~~~~~~
```
[R/linkDf.R:91:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L91) *style:* **Variable and function name style should be camelCase.**
```r
    inds_cond <- lapply(seq_along(inds),
    ^~~~~~~~~
```
[R/linkDf.R:98:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L98) *style:* **Variable and function name style should be camelCase.**
```r
    inds_uniq <- unique(unlist(inds_cond))
    ^~~~~~~~~
```
[R/linkDf.R:100:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L100) *style:* **Variable and function name style should be camelCase.**
```r
    inds_uniq_combn <- combn(inds_uniq, 2)
    ^~~~~~~~~~~~~~~
```
[R/linkDf.R:103:19:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L103) *warning:* **Avoid 1:ncol(...) expressions, use seq_len.**
```r
    sim <- lapply(1:ncol(inds_uniq_combn), function(x) {
                  ^
```
[R/linkDf.R:104:9:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L104) *style:* **Variable and function name style should be camelCase.**
```r
        row_sim <- strsplit(inds_uniq_combn[1, x], split = "_")[[1]][2]
        ^~~~~~~
```
[R/linkDf.R:105:9:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L105) *style:* **Variable and function name style should be camelCase.**
```r
        col_sim <- strsplit(inds_uniq_combn[2, x], split = "_")[[1]][2]
        ^~~~~~~
```
[R/linkDf.R:138:65:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L138) *style:* **Trailing whitespace is superfluous.**
```r
#' lower `numeric`, threshold value for similarity values, below
                                                                ^
```
[R/linkDf.R:165:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L165) *style:* **Lines should not be more than 80 characters.**
```r
    if (!all(colnames(link0df) == c("group1", "spectrum1",  "group2", "spectrum2",  "similarity")))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/linkDf.R:171:26:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L171) *style:* **Trailing whitespace is superfluous.**
```r
    if (lower > max(sim))
                         ^
```
[R/linkDf.R:226:66:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L226) *style:* **Trailing whitespace is superfluous.**
```r
    link0df <- createLink0df(similarityMatrix = similarityMatrix,
                                                                 ^
```
[R/linkDf.R:230:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L230) *style:* **Lines should not be more than 80 characters.**
```r
    thrLinkDf <- thresholdLinkDf(link0df = link0df, lower = lower, upper = upper)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/linkDf.R:278:40:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L278) *style:* **Commas should always have a space after.**
```r
        linkDf <- linkDf[which(linkDf[,"group1"] != linkDf[,"group2"]), ]
                                       ^
```
[R/linkDf.R:278:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L278) *style:* **Commas should always have a space after.**
```r
        linkDf <- linkDf[which(linkDf[,"group1"] != linkDf[,"group2"]), ]
                                                            ^
```
[R/linkDf.R:281:40:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L281) *style:* **Commas should always have a space after.**
```r
        linkDf <- linkDf[which(linkDf[,"group1"] == linkDf[,"group2"]), ]
                                       ^
```
[R/linkDf.R:281:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/linkDf.R#L281) *style:* **Commas should always have a space after.**
```r
        linkDf <- linkDf[which(linkDf[,"group1"] == linkDf[,"group2"]), ]
                                                            ^
```
[R/plottingFunctions.R:22:3:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L22) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plottingFunctions.R:82:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L82) *style:* **functions should have cyclomatic complexity of less than 15, this has 30.**
```r
plotCircos <- function(groupname, linkDf, initialize = c(TRUE, FALSE),
^
```
[R/plottingFunctions.R:93:63:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L93) *style:* **Remove spaces before the left parenthesis in a function call.**
```r
    name <- lapply(strsplit(groupname, split = "_"), function (x) x[length(x)])
                                                              ^
```
[R/plottingFunctions.R:97:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L97) *style:* **Variable and function name style should be camelCase.**
```r
    groupname_l <- length(groupname)
    ^~~~~~~~~~~
```
[R/plottingFunctions.R:107:11:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L107) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        if(!is.numeric(transparency)) stop("transparency is not numeric")
          ^
```
[R/plottingFunctions.R:112:35:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L112) *style:* **Commas should always have a space after.**
```r
            xlim = matrix(rep(c(0,1), groupname_l), ncol = 2, byrow = TRUE))
                                  ^
```
[R/plottingFunctions.R:119:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L119) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/plottingFunctions.R:147:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L147) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~
```
[R/plottingFunctions.R:152:23:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L152) *warning:* **no visible global function definition for ‘alpha’**
```r
            colour <- alpha(colour, transparency)
                      ^~~~~
```
[R/plottingFunctions.R:155:12:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L155) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        for( i in 1:length(uniqueGroup)) {
           ^
```
[R/plottingFunctions.R:155:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L155) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        for( i in 1:length(uniqueGroup)) {
            ^
```
[R/plottingFunctions.R:155:19:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L155) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for( i in 1:length(uniqueGroup)) {
                  ^
```
[R/plottingFunctions.R:166:12:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L166) *style:* **Place a space before left parenthesis, except in a function call.**
```r
        for( i in 1:length(uniqueGroup)) {
           ^
```
[R/plottingFunctions.R:166:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L166) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        for( i in 1:length(uniqueGroup)) {
            ^
```
[R/plottingFunctions.R:166:19:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L166) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
        for( i in 1:length(uniqueGroup)) {
                  ^
```
[R/plottingFunctions.R:171:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L171) *style:* **Lines should not be more than 80 characters.**
```r
                sector.index = groupname[c(minInd:maxInd)[floor(length(minInd:maxInd) / 2)]],
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plottingFunctions.R:181:38:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L181) *style:* **Commas should always have a space after.**
```r
                circos.link(linkDf[i,]$"spectrum1", 0.5,
                                     ^
```
[R/plottingFunctions.R:182:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L182) *style:* **Commas should always have a space after.**
```r
                    linkDf[i,]$"spectrum2", 0.5,
                             ^
```
[R/plottingFunctions.R:186:43:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L186) *style:* **Commas should always have a space after.**
```r
                        max(0.5, linkDf[i,][["similarity"]])},
                                          ^
```
[R/plottingFunctions.R:273:63:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L273) *style:* **Remove spaces before the left parenthesis in a function call.**
```r
    name <- lapply(strsplit(groupname, split = "_"), function (x) x[length(x)])
                                                              ^
```
[R/plottingFunctions.R:277:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L277) *style:* **Variable and function name style should be camelCase.**
```r
    groupname_l <- length(groupname)
    ^~~~~~~~~~~
```
[R/plottingFunctions.R:277:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L277) *warning:* **local variable ‘groupname_l’ assigned but may not be used**
```r
    groupname_l <- length(groupname)
    ^~~~~~~~~~~
```
[R/plottingFunctions.R:281:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L281) *warning:* **local variable ‘nameselected’ assigned but may not be used**
```r
    nameselected <- name[ind]
    ^~~~~~~~~~~~
```
[R/plottingFunctions.R:284:28:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L284) *style:* **Commas should always have a space after.**
```r
    linkDfSpec1 <- linkDf[,"spectrum1"]
                           ^
```
[R/plottingFunctions.R:285:28:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L285) *style:* **Commas should always have a space after.**
```r
    linkDfSpec2 <- linkDf[,"spectrum2"]
                           ^
```
[R/plottingFunctions.R:288:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L288) *style:* **Lines should not be more than 80 characters.**
```r
        colours <- alpha(palette()[as.numeric(as.factor(group))[ind]+1], transparency)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plottingFunctions.R:288:20:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L288) *warning:* **no visible global function definition for ‘alpha’**
```r
        colours <- alpha(palette()[as.numeric(as.factor(group))[ind]+1], transparency)
                   ^~~~~
```
[R/plottingFunctions.R:288:69:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L288) *style:* **Put spaces around all infix operators.**
```r
        colours <- alpha(palette()[as.numeric(as.factor(group))[ind]+1], transparency)
                                                                   ~^~
```
[R/plottingFunctions.R:290:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L290) *style:* **Lines should not be more than 80 characters.**
```r
        colours <- alpha(colour[as.numeric(as.factor(group))[ind]], transparency)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plottingFunctions.R:290:20:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L290) *warning:* **no visible global function definition for ‘alpha’**
```r
        colours <- alpha(colour[as.numeric(as.factor(group))[ind]], transparency)
                   ^~~~~
```
[R/plottingFunctions.R:293:15:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L293) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    for (h in 1:length(ind)) {
              ^
```
[R/plottingFunctions.R:301:12:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L301) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
    } else {linkDfInd <- NULL}
           ^
```
[R/plottingFunctions.R:301:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L301) *style:* **Closing curly-braces should always be on their own line, unless it's followed by an else.**
```r
    } else {linkDfInd <- NULL}
                             ^
```
[R/plottingFunctions.R:323:3:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L323) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plottingFunctions.R:325:3:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L325) *style:* **Trailing whitespace is superfluous.**
```r
#'
  ^
```
[R/plottingFunctions.R:330:65:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L330) *style:* **Trailing whitespace is superfluous.**
```r
#' groupname `character` vector containing "group" and "name" to
                                                                ^
```
[R/plottingFunctions.R:331:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L331) *style:* **Lines should not be more than 80 characters.**
```r
#' display, that is  a unique identifier of the features, "group" and "name" have
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plottingFunctions.R:331:82:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L331) *style:* **Trailing whitespace is superfluous.**
```r
#' display, that is  a unique identifier of the features, "group" and "name" have
                                                                                ^
```
[R/plottingFunctions.R:332:73:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L332) *style:* **Trailing whitespace is superfluous.**
```r
#' to be separated by `"_"` where "group" is the first and "name" is the
                                                                        ^
```
[R/plottingFunctions.R:339:70:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L339) *style:* **Trailing whitespace is superfluous.**
```r
#' colour `NULL` or `character`, colour defines the colours which are
                                                                     ^
```
[R/plottingFunctions.R:346:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L346) *style:* **Trailing whitespace is superfluous.**
```r
#' Internal use in `shinyCircos` or outside of `shinyCircos`
                                                            ^
```
[R/plottingFunctions.R:354:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L354) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/plottingFunctions.R:356:58:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L356) *style:* **Trailing whitespace is superfluous.**
```r
#' similarityMat <- compare_Spectra(spectra_tissue[1:10],
                                                         ^
```
[R/plottingFunctions.R:358:60:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L358) *style:* **Trailing whitespace is superfluous.**
```r
#' linkDf <- createLinkDf(similarityMatrix = similarityMat,
                                                           ^
```
[R/plottingFunctions.R:359:39:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L359) *style:* **Trailing whitespace is superfluous.**
```r
#'     spectra = spectra_tissue[1:10],
                                      ^
```
[R/plottingFunctions.R:360:74:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L360) *style:* **Trailing whitespace is superfluous.**
```r
#'     condition = c("SPL", "LIM", "ANT", "STY"), lower = 0.5, upper = 1)
                                                                         ^
```
[R/plottingFunctions.R:363:59:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L363) *style:* **Trailing whitespace is superfluous.**
```r
#' groupname <- c(as.character(linkDf_cut[, "spectrum1"]),
                                                          ^
```
[R/plottingFunctions.R:371:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L371) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:378:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L378) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:380:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L380) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:386:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L386) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:387:18:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L387) *style:* **Commas should always have a space after.**
```r
    plot(x = c(0,0.5), y = c(0,0.5), type = "n", xlab = "", ylab = "",
                 ^
```
[R/plottingFunctions.R:387:32:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L387) *style:* **Commas should always have a space after.**
```r
    plot(x = c(0,0.5), y = c(0,0.5), type = "n", xlab = "", ylab = "",
                               ^
```
[R/plottingFunctions.R:406:10:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L406) *style:* **Trailing whitespace is superfluous.**
```r
#' @param
         ^
```
[R/plottingFunctions.R:407:67:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L407) *style:* **Trailing whitespace is superfluous.**
```r
#' groupnameselected `character` vector with groupname of selected
                                                                  ^
```
[R/plottingFunctions.R:408:69:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L408) *style:* **Trailing whitespace is superfluous.**
```r
#' feature, vector containing "group" and "name" to display, that is
                                                                    ^
```
[R/plottingFunctions.R:412:10:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L412) *style:* **Trailing whitespace is superfluous.**
```r
#' @param
         ^
```
[R/plottingFunctions.R:413:63:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L413) *style:* **Trailing whitespace is superfluous.**
```r
#' linkDf `data.frame`, in each row there is information about
                                                              ^
```
[R/plottingFunctions.R:416:12:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L416) *style:* **Trailing whitespace is superfluous.**
```r
#' @details
           ^
```
[R/plottingFunctions.R:419:11:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L419) *style:* **Trailing whitespace is superfluous.**
```r
#' @return
          ^
```
[R/plottingFunctions.R:420:67:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L420) *style:* **Trailing whitespace is superfluous.**
```r
#' `getLinkDfIndices` returns indices concerning `linkDf` to which
                                                                  ^
```
[R/plottingFunctions.R:425:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L425) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/plottingFunctions.R:430:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L430) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:434:51:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L434) *style:* **Commas should always have a space after.**
```r
    linkDfInd <- lapply(linkDfInd, function(x) x[,1])
                                                  ^
```
[R/plottingFunctions.R:436:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L436) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:438:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L438) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:447:16:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L447) *style:* **Trailing whitespace is superfluous.**
```r
#' @description
               ^
```
[R/plottingFunctions.R:448:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L448) *style:* **Trailing whitespace is superfluous.**
```r
#' Calculates the nearest feature in polar coordinates given
                                                            ^
```
[R/plottingFunctions.R:457:12:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L457) *style:* **Trailing whitespace is superfluous.**
```r
#' @details
           ^
```
[R/plottingFunctions.R:458:60:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L458) *style:* **Trailing whitespace is superfluous.**
```r
#' `minFragCart2Polar` is employed to find the feature with
                                                           ^
```
[R/plottingFunctions.R:461:11:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L461) *style:* **Trailing whitespace is superfluous.**
```r
#' @return
          ^
```
[R/plottingFunctions.R:463:73:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L463) *style:* **Trailing whitespace is superfluous.**
```r
#' smallest distance to the given coordinates. As `minFragCart2Polar` is
                                                                        ^
```
[R/plottingFunctions.R:469:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L469) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/plottingFunctions.R:471:58:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L471) *style:* **Trailing whitespace is superfluous.**
```r
#' similarityMat <- compare_Spectra(spectra_tissue[1:10],
                                                         ^
```
[R/plottingFunctions.R:473:60:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L473) *style:* **Trailing whitespace is superfluous.**
```r
#' linkDf <- createLinkDf(similarityMatrix = similarityMat,
                                                           ^
```
[R/plottingFunctions.R:474:39:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L474) *style:* **Trailing whitespace is superfluous.**
```r
#'     spectra = spectra_tissue[1:10],
                                      ^
```
[R/plottingFunctions.R:475:74:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L475) *style:* **Trailing whitespace is superfluous.**
```r
#'     condition = c("SPL", "LIM", "ANT", "STY"), lower = 0.5, upper = 1)
                                                                         ^
```
[R/plottingFunctions.R:478:59:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L478) *style:* **Trailing whitespace is superfluous.**
```r
#' groupname <- c(as.character(linkDf_cut[, "spectrum1"]),
                                                          ^
```
[R/plottingFunctions.R:485:72:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L485) *style:* **Trailing whitespace is superfluous.**
```r
#' plotCircos(groupname, NULL, initialize = TRUE, featureNames = FALSE,
                                                                       ^
```
[R/plottingFunctions.R:489:39:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L489) *style:* **Trailing whitespace is superfluous.**
```r
#' degreeFeatures <- lapply(groupname,
                                      ^
```
[R/plottingFunctions.R:490:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L490) *style:* **Lines should not be more than 80 characters.**
```r
#'  function(x) mean(circlize:::get.sector.data(x)[c("start.degree", "end.degree")]))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/plottingFunctions.R:506:16:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L506) *style:* **Trailing whitespace is superfluous.**
```r
#' @description
               ^
```
[R/plottingFunctions.R:514:63:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L514) *style:* **Trailing whitespace is superfluous.**
```r
#' `cart2Polar` is employed to translate cartesian coordinates
                                                              ^
```
[R/plottingFunctions.R:518:11:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L518) *style:* **Trailing whitespace is superfluous.**
```r
#' @return
          ^
```
[R/plottingFunctions.R:523:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L523) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/plottingFunctions.R:529:15:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L529) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    r <- sqrt( x ^ 2 + y ^ 2)
              ^
```
[R/plottingFunctions.R:530:20:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L530) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    thetaP <- atan( y/x ) * 180 / pi
                   ^
```
[R/plottingFunctions.R:530:22:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L530) *style:* **Put spaces around all infix operators.**
```r
    thetaP <- atan( y/x ) * 180 / pi
                    ~^~
```
[R/plottingFunctions.R:530:24:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L530) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
    thetaP <- atan( y/x ) * 180 / pi
                       ^
```
[R/plottingFunctions.R:536:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L536) *style:* **Trailing whitespace is superfluous.**
```r

^~~~
```
[R/plottingFunctions.R:563:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L563) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/plottingFunctions.R:576:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L576) *style:* **Variable and function name style should be camelCase.**
```r
    mz_sub <- spectra[subject]@listData[[1]]@mz
    ^~~~~~
```
[R/plottingFunctions.R:577:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L577) *style:* **Variable and function name style should be camelCase.**
```r
    int_sub <- spectra[subject]@listData[[1]]@intensity
    ^~~~~~~
```
[R/plottingFunctions.R:578:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L578) *style:* **Variable and function name style should be camelCase.**
```r
    mz_que <- spectra[query]@listData[[1]]@mz
    ^~~~~~
```
[R/plottingFunctions.R:579:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L579) *style:* **Variable and function name style should be camelCase.**
```r
    int_que <- spectra[query]@listData[[1]]@intensity
    ^~~~~~~
```
[R/plottingFunctions.R:581:25:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L581) *style:* **Trailing whitespace is superfluous.**
```r
    ## normalize to 100%
                        ^
```
[R/plottingFunctions.R:582:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L582) *style:* **Variable and function name style should be camelCase.**
```r
    int_sub <- int_sub / max(int_sub) * 100
    ^~~~~~~
```
[R/plottingFunctions.R:583:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L583) *style:* **Variable and function name style should be camelCase.**
```r
    int_que <- int_que / max(int_que) * 100
    ^~~~~~~
```
[R/plottingFunctions.R:585:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L585) *style:* **Variable and function name style should be camelCase.**
```r
    df_sub <- data.frame(mz = mz_sub, int = -int_sub, is = "MS/MS #1")
    ^~~~~~
```
[R/plottingFunctions.R:586:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L586) *style:* **Variable and function name style should be camelCase.**
```r
    df_que <- data.frame(mz = mz_que, int = int_que, is = "MS/MS #2")
    ^~~~~~
```
[R/plottingFunctions.R:590:17:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L590) *style:* **Trailing whitespace is superfluous.**
```r
    ggplot(df) +
                ^
```
[R/plottingFunctions.R:591:43:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/plottingFunctions.R#L591) *style:* **Put spaces around all infix operators.**
```r
        geom_segment(aes(x = mz, xend = mz+0.001, y = int, yend = 0, col = is),
                                         ~^~
```
[R/sd01_outputXCMS-data.R:5:16:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/sd01_outputXCMS-data.R#L5) *style:* **Trailing whitespace is superfluous.**
```r
#' @description
               ^
```
[R/sd01_outputXCMS-data.R:7:69:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/sd01_outputXCMS-data.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' `XCMS` using the data from Li et al. (2015). See Li et al. (2015)
                                                                    ^
```
[R/sd02_deconvoluted-data.R:5:16:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/sd02_deconvoluted-data.R#L5) *style:* **Trailing whitespace is superfluous.**
```r
#' @description
               ^
```
[R/sd02_deconvoluted-data.R:6:58:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/sd02_deconvoluted-data.R#L6) *style:* **Trailing whitespace is superfluous.**
```r
#' `sd02_deconvoluted` contains MS/MS data from Li et al.
                                                         ^
```
[R/sd02_deconvoluted-data.R:7:72:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/sd02_deconvoluted-data.R#L7) *style:* **Trailing whitespace is superfluous.**
```r
#' (2015). It is a `data.frame` which hosts m/z values, retention time,
                                                                       ^
```
[R/shinyApp.R:10:60:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L10) *style:* **Trailing whitespace is superfluous.**
```r
#' Visualise the similarity of MS/MS features in a reactive
                                                           ^
```
[R/shinyApp.R:11:78:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L11) *style:* **Trailing whitespace is superfluous.**
```r
#' context. See `Details` the vignette for further descriptions on how to use
                                                                             ^
```
[R/shinyApp.R:15:58:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L15) *style:* **Trailing whitespace is superfluous.**
```r
#' similarityMatrix `matrix`, `similarityMatrix` contains
                                                         ^
```
[R/shinyApp.R:16:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L16) *style:* **Lines should not be more than 80 characters.**
```r
#' pair-wise similarity coefficients which give information about the similarity
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:16:81:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L16) *style:* **Trailing whitespace is superfluous.**
```r
#' pair-wise similarity coefficients which give information about the similarity
                                                                                ^
```
[R/shinyApp.R:20:48:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L20) *style:* **Trailing whitespace is superfluous.**
```r
#' spectra an S4 object of class `Spectra`, the
                                               ^
```
[R/shinyApp.R:21:75:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L21) *style:* **Trailing whitespace is superfluous.**
```r
#' `Spectra` object will be used to display information about the selected
                                                                          ^
```
[R/shinyApp.R:29:55:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L29) *style:* **Trailing whitespace is superfluous.**
```r
#' ... further arguments passed to `shinyCircos`, e.g.
                                                      ^
```
[R/shinyApp.R:30:65:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L30) *style:* **Trailing whitespace is superfluous.**
```r
#' `cexFeatureNames` to pass to `plotCircos` to set font size in
                                                                ^
```
[R/shinyApp.R:34:64:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L34) *style:* **Trailing whitespace is superfluous.**
```r
#' The function is based on the `shiny` and `circlize` package.
                                                               ^
```
[R/shinyApp.R:35:75:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L35) *style:* **Trailing whitespace is superfluous.**
```r
#' The user can choose interactively thresholds, type of links (between or
                                                                          ^
```
[R/shinyApp.R:36:80:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L36) *style:* **Trailing whitespace is superfluous.**
```r
#' within groups), display information about MS/MS features, permanently select
                                                                               ^
```
[R/shinyApp.R:38:77:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L38) *style:* **Trailing whitespace is superfluous.**
```r
#' stores annotation information about the MS/MS features. Names of features
                                                                            ^
```
[R/shinyApp.R:39:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L39) *style:* **Trailing whitespace is superfluous.**
```r
#' within the `similarityMatrix` have to be found as entries
                                                            ^
```
[R/shinyApp.R:40:62:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L40) *style:* **Trailing whitespace is superfluous.**
```r
#' in `Spectra`. `names(Spectra)` are used as identifiers and
                                                             ^
```
[R/shinyApp.R:41:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L41) *style:* **Trailing whitespace is superfluous.**
```r
#' `colnames`/`rownames` from `similarityMatrix` are cleaved
                                                            ^
```
[R/shinyApp.R:44:70:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L44) *style:* **Trailing whitespace is superfluous.**
```r
#' "adduct" in the slot `elementMetadata` of `spectra`. After exiting
                                                                     ^
```
[R/shinyApp.R:46:72:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L46) *style:* **Trailing whitespace is superfluous.**
```r
#' in the slot `elementMetadata`. If one or several of these columns is
                                                                       ^
```
[R/shinyApp.R:47:75:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L47) *style:* **Trailing whitespace is superfluous.**
```r
#' already present in `elementMetadata`, the column(s) will be used as the
                                                                          ^
```
[R/shinyApp.R:51:68:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L51) *style:* **Trailing whitespace is superfluous.**
```r
#' `character`, `shinyCircos` returns a `character` vector with the
                                                                   ^
```
[R/shinyApp.R:57:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L57) *style:* **Trailing whitespace is superfluous.**
```r
#' @examples
            ^
```
[R/shinyApp.R:62:49:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L62) *style:* **Trailing whitespace is superfluous.**
```r
#' shinyCircos(similarityMatrix = similarityMat,
                                                ^
```
[R/shinyApp.R:66:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L66) *style:* **functions should have cyclomatic complexity of less than 15, this has 46.**
```r
shinyCircos <- function(similarityMatrix, spectra, condition, ...) {
^
```
[R/shinyApp.R:91:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L91) *warning:* **local variable ‘rt’ assigned but may not be used**
```r
    rt <- unlist(lapply(spectra@listData, function(x) x@rt))
    ^~
```
[R/shinyApp.R:92:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L92) *style:* **Variable and function name style should be camelCase.**
```r
    prec_mz <- unlist(lapply(spectra@listData, function(x) x@precursorMz))
    ^~~~~~~
```
[R/shinyApp.R:92:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L92) *warning:* **local variable ‘prec_mz’ assigned but may not be used**
```r
    prec_mz <- unlist(lapply(spectra@listData, function(x) x@precursorMz))
    ^~~~~~~
```
[R/shinyApp.R:94:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L94) *warning:* **local variable ‘groupname’ assigned but may not be used**
```r
    groupname <- rownames(similarityMatrix)
    ^~~~~~~~~
```
[R/shinyApp.R:98:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L98) *style:* **Variable and function name style should be camelCase.**
```r
    RT <- MetCirc:::typeMatch_link0(similarityMatrix = similarityMatrix,
    ^~
```
[R/shinyApp.R:101:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L101) *style:* **Variable and function name style should be camelCase.**
```r
    rt_match <- RT[["type_match"]]
    ^~~~~~~~
```
[R/shinyApp.R:108:64:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L108) *style:* **Remove spaces before the left parenthesis in a function call.**
```r
    nameRT <- lapply(strsplit(rt_match, split = "_"), function (x) x[length(x)])
                                                               ^
```
[R/shinyApp.R:120:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L120) *style:* **Variable and function name style should be camelCase.**
```r
    MZ <- MetCirc:::typeMatch_link0(similarityMatrix = similarityMatrix,
    ^~
```
[R/shinyApp.R:123:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L123) *style:* **Variable and function name style should be camelCase.**
```r
    mz_match <- MZ[["type_match"]]
    ^~~~~~~~
```
[R/shinyApp.R:130:64:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L130) *style:* **Remove spaces before the left parenthesis in a function call.**
```r
    nameMZ <- lapply(strsplit(mz_match, split = "_"), function (x) x[length(x)])
                                                               ^
```
[R/shinyApp.R:142:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L142) *style:* **Variable and function name style should be camelCase.**
```r
    Clust <- MetCirc:::typeMatch_link0(similarityMatrix = similarityMatrix,
    ^~~~~
```
[R/shinyApp.R:145:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L145) *style:* **Variable and function name style should be camelCase.**
```r
    clust_match <- Clust[["type_match"]]
    ^~~~~~~~~~~
```
[R/shinyApp.R:152:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L152) *style:* **Lines should not be more than 80 characters.**
```r
    nameClust <- lapply(strsplit(clust_match, split = "_"), function (x) x[length(x)])
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:152:70:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L152) *style:* **Remove spaces before the left parenthesis in a function call.**
```r
    nameClust <- lapply(strsplit(clust_match, split = "_"), function (x) x[length(x)])
                                                                     ^
```
[R/shinyApp.R:164:5:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L164) *style:* **Variable and function name style should be camelCase.**
```r
    plot_l <- list(highlightMz = highlightMZ, fillMz = fillMZ,
    ^~~~~~
```
[R/shinyApp.R:183:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L183) *style:* **Lines should not be more than 80 characters.**
```r
                            choices = c("all" = "all", "inter-class links" = "inter",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:184:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L184) *style:* **Lines should not be more than 80 characters.**
```r
                                "intra-class links" = "intra"), selected = "all"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:189:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L189) *style:* **Lines should not be more than 80 characters.**
```r
                            choices = c("clustering" = "clustering", "m/z" = "mz",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:190:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L190) *style:* **Lines should not be more than 80 characters.**
```r
                              "retention time" = "retentionTime"), selected = "mz"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:197:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L197) *style:* **Lines should not be more than 80 characters.**
```r
                        actionButton("stop", "Stop and export \n selected features")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:204:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L204) *style:* **Trailing whitespace is superfluous.**
```r
                        sliderInput("plotSize", "plot size",
                                                            ^
```
[R/shinyApp.R:210:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L210) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~~~~~~
```
[R/shinyApp.R:217:41:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L217) *style:* **Trailing whitespace is superfluous.**
```r
                plotOutput("plotSpec")),
                                        ^
```
[R/shinyApp.R:231:16:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L231) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        spe <- reactiveValues(spectra = spectra)
               ^~~~~~~~~~~~~~
```
[R/shinyApp.R:235:51:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L235) *style:* **Trailing whitespace is superfluous.**
```r
                textInput("names", label = "name",
                                                  ^
```
[R/shinyApp.R:237:24:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L237) *style:* **Trailing whitespace is superfluous.**
```r
            } else NULL
                       ^~
```
[R/shinyApp.R:244:24:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L244) *style:* **Trailing whitespace is superfluous.**
```r
            } else NULL
                       ^
```
[R/shinyApp.R:251:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L251) *style:* **Lines should not be more than 80 characters.**
```r
                    value = isolate(spe$spectra@elementMetadata$information[ind()]))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:252:24:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L252) *style:* **Trailing whitespace is superfluous.**
```r
            } else NULL
                       ^~
```
[R/shinyApp.R:259:24:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L259) *style:* **Trailing whitespace is superfluous.**
```r
            } else NULL
                       ^~
```
[R/shinyApp.R:279:19:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L279) *warning:* **no visible global function definition for ‘eventReactive’**
```r
        indAnn <- eventReactive(input$annotate, {ind()})
                  ^~~~~~~~~~~~~
```
[R/shinyApp.R:279:49:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L279) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        indAnn <- eventReactive(input$annotate, {ind()})
                                                ^
```
[R/shinyApp.R:287:28:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L287) *warning:* **no visible global function definition for ‘eventReactive’**
```r
        annotateClasses <- eventReactive(input$annotate, {input$classes})
                           ^~~~~~~~~~~~~
```
[R/shinyApp.R:287:58:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L287) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        annotateClasses <- eventReactive(input$annotate, {input$classes})
                                                         ^
```
[R/shinyApp.R:290:61:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L290) *style:* **Trailing whitespace is superfluous.**
```r
        annotateInformation <- eventReactive(input$annotate,
                                                            ^
```
[R/shinyApp.R:291:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L291) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
            {input$information})
            ^
```
[R/shinyApp.R:294:27:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L294) *warning:* **no visible global function definition for ‘eventReactive’**
```r
        annotateAdduct <- eventReactive(input$annotate, {input$adduct})
                          ^~~~~~~~~~~~~
```
[R/shinyApp.R:294:57:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L294) *style:* **Opening curly braces should never go on their own line and should always be followed by a new line.**
```r
        annotateAdduct <- eventReactive(input$annotate, {input$adduct})
                                                        ^
```
[R/shinyApp.R:307:65:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L307) *style:* **Trailing whitespace is superfluous.**
```r
            spe$spectra@elementMetadata$information[indAnn()] <-
                                                                ^
```
[R/shinyApp.R:318:9:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L318) *style:* **Variable and function name style should be camelCase.**
```r
        GN <- reactive({
        ^~
```
[R/shinyApp.R:334:9:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L334) *style:* **Variable and function name style should be camelCase.**
```r
        linkDf_cut <- reactive(
        ^~~~~~~~~~
```
[R/shinyApp.R:338:9:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L338) *style:* **Variable and function name style should be camelCase.**
```r
        linkDf_threshold <- reactive(
        ^~~~~~~~~~~~~~~~
```
[R/shinyApp.R:343:25:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L343) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        coordsNewSgl <- reactiveValues(X = 0, Y = 0)
                        ^~~~~~~~~~~~~~
```
[R/shinyApp.R:344:25:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L344) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        coordsOldSgl <- reactiveValues(X = 0, Y = 0)
                        ^~~~~~~~~~~~~~
```
[R/shinyApp.R:348:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L348) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewSgl$X <- input$circosSgl$x
                             ^
```
[R/shinyApp.R:349:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L349) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewSgl$Y <- input$circosSgl$y
                             ^
```
[R/shinyApp.R:350:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L350) *style:* **Variable and function name style should be camelCase.**
```r
                coordsOldSgl$X <- coordsNewSgl$X
                             ^
```
[R/shinyApp.R:351:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L351) *style:* **Variable and function name style should be camelCase.**
```r
                coordsOldSgl$Y <- coordsNewSgl$Y
                             ^
```
[R/shinyApp.R:353:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L353) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewSgl$X <- coordsOldSgl$X
                             ^
```
[R/shinyApp.R:354:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L354) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewSgl$Y <- coordsOldSgl$Y
                             ^
```
[R/shinyApp.R:359:21:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L359) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        onCircle <- reactiveValues(is = NULL)
                    ^~~~~~~~~~~~~~
```
[R/shinyApp.R:372:19:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L372) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        indSgl <- reactiveValues(ind = NULL)
                  ^~~~~~~~~~~~~~
```
[R/shinyApp.R:380:25:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L380) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        coordsNewDbl <- reactiveValues(X = 0, Y = 0)
                        ^~~~~~~~~~~~~~
```
[R/shinyApp.R:381:25:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L381) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        coordsOldDbl <- reactiveValues(X = 0, Y = 0)
                        ^~~~~~~~~~~~~~
```
[R/shinyApp.R:385:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L385) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewDbl$X <- input$circosDbl$x
                             ^
```
[R/shinyApp.R:386:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L386) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewDbl$Y <- input$circosDbl$y
                             ^
```
[R/shinyApp.R:387:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L387) *style:* **Variable and function name style should be camelCase.**
```r
                coordsOldDbl$X <- coordsNewDbl$X
                             ^
```
[R/shinyApp.R:388:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L388) *style:* **Variable and function name style should be camelCase.**
```r
                coordsOldDbl$Y <- coordsNewDbl$Y
                             ^
```
[R/shinyApp.R:390:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L390) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewDbl$X <- coordsOldDbl$X
                             ^
```
[R/shinyApp.R:391:30:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L391) *style:* **Variable and function name style should be camelCase.**
```r
                coordsNewDbl$Y <- coordsOldDbl$Y
                             ^
```
[R/shinyApp.R:397:19:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L397) *warning:* **no visible global function definition for ‘reactiveValues’**
```r
        indDbl <- reactiveValues(ind = NULL, new = NULL)
                  ^~~~~~~~~~~~~~
```
[R/shinyApp.R:400:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L400) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~~~~~~~~~
```
[R/shinyApp.R:404:21:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L404) *style:* **Variable and function name style should be camelCase.**
```r
                    GNselect <- GN()[minInd]
                    ^~~~~~~~
```
[R/shinyApp.R:408:1:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L408) *style:* **Trailing whitespace is superfluous.**
```r

^~~~~~~~~~~~~~~~~~~~
```
[R/shinyApp.R:413:14:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L413) *style:* **Trailing whitespace is superfluous.**
```r
            }
             ^
```
[R/shinyApp.R:418:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L418) *warning:* **no visible global function definition for ‘isolate’**
```r
            isolate(indDblMZ$ind <- NULL)
            ^~~~~~~
```
[R/shinyApp.R:419:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L419) *warning:* **no visible global function definition for ‘isolate’**
```r
            isolate(indDblRT$ind <- NULL)
            ^~~~~~~
```
[R/shinyApp.R:420:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L420) *warning:* **no visible global function definition for ‘isolate’**
```r
            isolate(indDblCluster$ind <- NULL)
            ^~~~~~~
```
[R/shinyApp.R:421:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L421) *warning:* **no visible global function definition for ‘isolate’**
```r
            isolate(indDbl$new <- NULL)
            ^~~~~~~
```
[R/shinyApp.R:422:13:](https://github.com/tnaake/MetCirc/blob/76ef8a167d747df48e093d2034d7f1eea4bbe93c/R/shinyApp.R#L422) *warning:* **no visible global function definition for ‘isolate’**
```r
            isolate(onCircle$is <- FALSE)
            ^~~~~~~
```


Hi @batuhanfaik
I guess this line is done by a mistake since it disallows database to reset itself.
I'll fix it.


Deployment failed with the following error:

~~~
Configuring `regions` is not necessary for Static Files. Deploying Serverless Functions to multiple regions is restricted to paid plans. Upgrade here: https://zeit.co/account/billing.
~~~


Successfully deployed to following URLs:

* https://baseweb-jkik7mrw7.now.sh
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When running the submodule command, like this page suggest "[Manually installing the MongoDB PHP Driver](https://www.php.net/manual/en/mongodb.installation.manual.php)", the libmongocrypt is failing becuase the url

I changed the url proto for **https** and the `git submodule update --init` command works fine.


Your program won't work without **path_csv** and **col_name** arguments, so they are required. So you should use positional arguments.
If you write "-your_argument", it means that **your_argument** is optional, and your program can work without it

Also it'd be great to add some help information for users.
```
parser.add_argument('path_csv',
                    help='path to input CSV file')
parser.add_argument('col_name',
                    help='CSV column name. If column contains few words, '
                         'use _ between them')
```


Successfully deployed to following URLs:

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* https://thisishugocom-git-master.dissimile.now.sh


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit c6d7f4313155ee5a897534b69f3a8c0a0a992934.

You can try again later or [upgrade](https://zeit.co/teams/cogito-study/settings/plan) your plan.


Successfully deployed to following URLs:

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You're a hero!


### Integration report for "Update pull_request_template.md (#486)"
[Report for upstream](https://circleci.com/gh/mozilla-services/mozilla-pipeline-schemas/2739/artifacts/0/app/test-reports/eceb6b9.report.json)
[Report for latest commit](https://circleci.com/gh/mozilla-services/mozilla-pipeline-schemas/2739/artifacts/0/app/test-reports/eceb6b9.report.json)

No changes detected.


TeamCity Architecture Team / Java Platform / otj-spring-archetypes / BuildTest [Build 138](https://teamcity.otenv.com/viewLog.html?buildId=11759844&buildTypeId=ArchitectureTeam_JavaPlatform_OtjSpringArchetypes_Buil) outcome was **SUCCESS**
Summary: Running Build time: 00:03:53


自动构建 [auto-dragalia-5496b331.zip](https://circleci.com/gh/NateScarlet/auto-dragalia/870/artifacts/0/home/circleci/project/artifacts/auto-dragalia-5496b331.zip)


¿Aquí que fue lo que testeaste? porque según veo no verifica nada