[R/ABC_SMC.R:11:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/get_norm_brts.R:22:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/get_norm_brts.R#L22) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:27:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L27) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
nltt_diff_exact_extinct <- function(
^
```
[R/nltt_diff_exact_extinct.R:50:27:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L50) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nltt_diff_exact_extinct.R:57:25:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L57) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nltt_diff_exact_extinct.R:82:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    species_number_n <- species_number / max(species_number)  #normalize lineages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:87:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    event_times2_n <- 1 - event_times2 / min(event_times2) #normalize branching times
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:88:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
    species_number2_n <- species_number2 / max(species_number2)  #normalize lineages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:136:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L136) *style:* **Commented code should be removed.**
```r
  # testit::assert(event_times[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:137:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L137) *style:* **Commented code should be removed.**
```r
  # testit::assert(species_number[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:138:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L138) *style:* **Commented code should be removed.**
```r
  # testit::assert(event_times2[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:139:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L139) *style:* **Commented code should be removed.**
```r
  # testit::assert(species_number[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:141:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L141) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(event_times >= 0.0 & event_times <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:142:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L142) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(species_number >= 0.0 & species_number <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:143:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L143) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(event_times2 >= 0.0 & event_times2 <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:144:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L144) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(species_number >= 0.0 & species_number <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:183:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L183) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:184:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L184) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:185:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltt_diff_exact_extinct.R#L185) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nLTTDiff.R:59:27:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-nltt_diff_exact_brts.R:40:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-nltt_diff_exact_brts.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
    regexp = "branching times must be negative, for example -3 time units since the present"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-nltt_diff_exact_brts.R:66:1:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-nltt_diff_exact_brts.R#L66) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:29:16:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-nltt_diff_exact_extinct.R#L29) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages1 <- 1:length(event_times)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:30:16:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-nltt_diff_exact_extinct.R#L30) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages2 <- 1:length(event_times2)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:95:16:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-nltt_diff_exact_extinct.R#L95) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages1 <- 1:length(event_times)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:96:16:](https://github.com/Neves-P/nLTT/blob/cc55cc812496df116d0dab93e740ce17b54eeeff/tests/testthat/test-nltt_diff_exact_extinct.R#L96) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages2 <- 1:length(event_times2)
               ^
```


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v1-with-alias-xrxddkaqfg.now.sh
* https://z-github-e2e-tests-dev-only.now.sh


This needs to be:  `application = app = Flask(_name_)` (for Beanstalk)


Failed to assign a domain to your deployment due to the following error:

~~~
The domain ut7megmkxa.com is not verfied and cannot be used as an alias.
~~~

([Learn more](http://localhost:3000/zeit-github-test-dev/github-e2e-test-dev-domain-issues/lzkw1wn44) or [visit](https://github-e2e-test-dev-domain-issues-lzkw1wn44.now.sh) the non-aliased deployment)


TeamCity MAS / MAS [Build 1.1.0.704-MAS-150-WeeklyEmailN](https://teamcity.nice.org.uk/viewLog.html?buildId=64902&buildTypeId=Mas_Mas) outcome was **FAILURE**
Summary: Tests failed: 1, passed: 15; artifacts size 194.7 KB is 95% different from 3.7 MB in build #1.1.0.660-MAS-150-WeeklyEmailN Build time: 00:00:41
### Failed tests
```
api/weeklies.test.js: weeklies singleBySendDate should populate the source, evidenceType and speciality fields on the items: <no details avaliable>

```


[R/ABC_SMC.R:11:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/get_norm_brts.R:22:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/get_norm_brts.R#L22) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:27:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L27) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
nltt_diff_exact_extinct <- function(
^
```
[R/nltt_diff_exact_extinct.R:50:27:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L50) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nltt_diff_exact_extinct.R:57:25:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L57) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nltt_diff_exact_extinct.R:82:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    species_number_n <- species_number / max(species_number)  #normalize lineages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:87:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    event_times2_n <- 1 - event_times2 / min(event_times2) #normalize branching times
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:88:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
    species_number2_n <- species_number2 / max(species_number2)  #normalize lineages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:136:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L136) *style:* **Commented code should be removed.**
```r
  # testit::assert(event_times[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:137:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L137) *style:* **Commented code should be removed.**
```r
  # testit::assert(species_number[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:138:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L138) *style:* **Commented code should be removed.**
```r
  # testit::assert(event_times2[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:139:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L139) *style:* **Commented code should be removed.**
```r
  # testit::assert(species_number[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:141:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L141) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(event_times >= 0.0 & event_times <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:142:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L142) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(species_number >= 0.0 & species_number <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:143:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L143) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(event_times2 >= 0.0 & event_times2 <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:144:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L144) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(species_number >= 0.0 & species_number <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:183:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L183) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:184:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L184) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:185:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltt_diff_exact_extinct.R#L185) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nLTTDiff.R:59:27:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-nltt_diff_exact_brts.R:40:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-nltt_diff_exact_brts.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
    regexp = "branching times must be negative, for example -3 time units since the present"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-nltt_diff_exact_brts.R:66:1:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-nltt_diff_exact_brts.R#L66) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:29:16:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-nltt_diff_exact_extinct.R#L29) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages1 <- 1:length(event_times)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:30:16:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-nltt_diff_exact_extinct.R#L30) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages2 <- 1:length(event_times2)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:95:16:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-nltt_diff_exact_extinct.R#L95) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages1 <- 1:length(event_times)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:96:16:](https://github.com/Neves-P/nLTT/blob/cd1038bb03d01ad1f05a4ee86176cd3de63217d0/tests/testthat/test-nltt_diff_exact_extinct.R#L96) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages2 <- 1:length(event_times2)
               ^
```


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 799+rDF59313](https://teamcity.nice.org.uk/viewLog.html?buildId=65003&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **SUCCESS**
Summary: Tests passed: 59 Build time: 00:03:38


Noticed now that the vectors for testing instances defined on line 60-69 don't appear to be used anywhere anymore, so they can be removed


Was removed here for some reason. @Athanaseus


@oskasf I don't understand why you gave these particular labels; can you come up with more informative ones (or was there a particular logic I'm missing)?

For example:
`uc_fdd_fd` represents 1 obs per fundraiser, usual categories,
u=UK-based only,
c=completed 25+ weeks ago,
fdd= fundraiser and  (aggregated) donation info,
_fd = one row per fundraiser, merged back data from fundraiser database


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FYI Testcontainers will shutdown the containers automatically, even if you `kill -9` the JVM.
Have you observed a different behaviour?


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I agree. I've written some documentation that mentions, among other things, that some computers don't have a NULL device.


Filed an issue: #277


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# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

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---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

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|Deployment project |
----|
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The field can be made readonly.


Now I think about it, this check should happen inside miniserv.pl rather than the start script. I've just checked in a change to add that.


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @nehaljwani was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


You don't need `toString`


its' not work! @Aurel300


Failed to assign a domain to your deployment due to the following error:

~~~
The chosen alias "snuggsi.now.sh" is already in use.
~~~

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Perfecto, los cambios funcaron :+1:
:mushroom:


# Probando markdown


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@youknowone I know my opinion isn't worth very much, but wonder if this pattern is actually going to be a net positive.

It's really easy to search for ```__add__```, ```__iter__```, ```__len__```, ```__call__```, ```__or__```, ```__bool__``` and so forth to find the implementations of the Python methods in Rust code almost immediately, but if this pattern starts being used frequently you would have to search for ```add```, ```iter```, ```len```, ```call```, ```or```, ```bool``` and so forth.  It would be very noisy and less useful.

It would also be another bit of "magic" that a new contributor might be initially confused about and spend some effort to mentally keep track of (whereas ```pymethod(name = "__call__")``` is very self-explanatory and obvious).

I think this is a really clever bit of work and a little bit more convenient for a programmer writing new code, but do you foresee a long-term benefit to this pattern beyond saving a few keystrokes?


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Congratulations!


Which TMC2209's did you use do you have a link to where i can find them?


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Hello @mguillem, please do send one. I've been a bit busy so haven't had a chance to test this out. I'll run your PR through some tests before deciding what we can do about this one.


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@joeymoore  -  Was it your intention to push that one to the master branch as the readme claims to use the "v2" branch instead?


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i.o.


I guess min_score should be much higher here, no?


Ok, lets assume that you really want to combat the compatibility like this (what is not a good way to solve compatibility)
you still incorrectly take a substring of the suffix then, because you just cut of part of the prefix but not add it in front of the suffix


@bjornbytes oh!! reading comprehension fail! Awesome, thanks <3


I have changed java.util.Date to java.sql.Date


Do the same thing on foxnews/foxbusiness. I'm refering to the bottom yellow bar, other anti-adblock won't be stopped.


Yes, i don't add the prefix to suffix because it doesn't make sense (because it only makes sense for sidebar scoreboard), so i just cut it.


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Deployment failed with the following error:

~~~
Could not find a secret by name "firebase-api-key"
~~~


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Внёс исправления в index.html и catalog.html


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Then we arrive back at a caching solution where we determine if we are in fact working with a sidebar scoreboard (+ the player name caching).
Or an API, because currently there is no way for us to solve compatibility


Even more efficient is ` pos.pieces(Them, KNIGHT, ROOK) `


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~~~
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~~~

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No, sorry, that was dirichlet, not DirichletReg ;-)


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Можно просто name


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> https://pypi.org/project/schedule/

我看到了你这个，觉得太麻烦了，才自己写的……


These look useful.  Thank you.


How about do it like this?
![SPBCT wp loc  D__OSPanel_domains_wp loc_wp-content](https://user-images.githubusercontent.com/16255344/73136109-a9a40b00-406b-11ea-8cac-6e216cf209fc.png)


This breaks the special custom parsing feature introduced in https://github.com/bcosca/fatfree-core/commit/13f2172dc920914c64dd1028a30b95ee6b255c5d
See https://groups.google.com/forum/#!topic/f3-framework/Lv-3D-LGyYY

Maybe revert this commit? or replace `[^:]` with `[^:>\s]`?


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* https://blog-nuxt-git-master.bramaudi1.now.sh


> 我看到了你这个，觉得太麻烦了，才自己写的……

.......


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Давай многострочно
```ruby
months = {
  jan.....
  feb.....
  ....
}
```


They do actually.
![image](https://user-images.githubusercontent.com/16255344/73136139-0d2e3880-406c-11ea-8c07-489f8fc59b21.png)


inlineのstyleは{{}}としないといけない


No need to wrap these values; `min-temp: ${...}`


🔥 Device tests completed (Failed) on iOS32b on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=3413800)(iOS32b): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/donot-crash-read-results/269242011c24058e1818affa4855c71a463cbf4a/3413800/device-tests/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary># Test run in progress: Running: 1, RunQueued: 23, Failed: 115, Ignored: 1060, Crashed: 1, TimedOut: 6, BuildFailure: 6</summary>

## Failed tests

 * monotouch-test/iOS Unified 32-bits - device/Debug: Failed
 * framework-test/iOS Unified 32-bits - device/Debug: Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/Debug: Failed
 * fsharp/iOS Unified 32-bits - device/Debug: Failed
 * dont link/iOS Unified 32-bits - device/Release: Failed
 * link all/iOS Unified 32-bits - device/Debug: Failed
 * link sdk/iOS Unified 32-bits - device/Debug: Failed
 * mono-native-compat/iOS Unified 32-bits - device/Debug: Failed
 * mono-native-unified/iOS Unified 32-bits - device/Debug: Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/Debug: Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/Debug: Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/Debug: Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/Debug: Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/Debug: Failed
 * mscorlib Part 1/iOS Unified 32-bits - device/Debug: Failed
 * mscorlib Part 2/iOS Unified 32-bits - device/Debug: BuildFailure
 * [xUnit] Mono SystemCoreXunit Part 1/iOS Unified 32-bits - device/Debug: Failed
 * [xUnit] Mono SystemCoreXunit Part 2/iOS Unified 32-bits - device/Debug: Failed
 * [xUnit] Mono SystemXunit/iOS Unified 32-bits - device/Debug: Failed
 * monotouch-test/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * monotouch-test/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * monotouch-test/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * monotouch-test/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * monotouch-test/iOS Unified 32-bits - device/Release: Failed
 * monotouch-test/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * monotouch-test/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * monotouch-test/iOS Unified 32-bits - device/Release (all optimizations): Failed
 * monotouch-test/iOS Unified 32-bits - device/Debug (all optimizations): Failed
 * monotouch-test/iOS Unified 32-bits - device/Debug: SGenConc: Failed
 * framework-test/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * framework-test/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * framework-test/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * framework-test/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * framework-test/iOS Unified 32-bits - device/Release: Failed
 * framework-test/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * framework-test/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/Release: Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * interdependent-binding-projects/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * fsharp/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * fsharp/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * fsharp/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * fsharp/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * fsharp/iOS Unified 32-bits - device/Release: Failed
 * fsharp/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * fsharp/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * dont link/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * dont link/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Crashed
 * link all/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * link all/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * link all/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * link all/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * link all/iOS Unified 32-bits - device/Release: Failed
 * link all/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * link all/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * link sdk/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * link sdk/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * link sdk/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * link sdk/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * link sdk/iOS Unified 32-bits - device/Release: Failed
 * link sdk/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * link sdk/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * mono-native-compat/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * mono-native-compat/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * mono-native-compat/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * mono-native-compat/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * mono-native-compat/iOS Unified 32-bits - device/Release: Failed
 * mono-native-compat/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * mono-native-compat/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * mono-native-unified/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * mono-native-unified/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * mono-native-unified/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * mono-native-unified/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * mono-native-unified/iOS Unified 32-bits - device/Release: Failed
 * mono-native-unified/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * mono-native-unified/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/Release: Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * [NUnit] Mono BCL tests group 1/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/Release: TimedOut
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/Release: UseThumb: TimedOut
 * [NUnit] Mono BCL tests group 2/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): TimedOut
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/Release: Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * [xUnit] Mono BCL tests group 3/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/Release: Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * [xUnit] Mono BCL tests group 4/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/Release: Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/Release: UseThumb: Failed
 * [xUnit] Mono BCL tests group 5/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
 * mscorlib Part 1/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): Failed
 * mscorlib Part 1/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): Failed
 * mscorlib Part 1/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): Failed
 * mscorlib Part 1/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * mscorlib Part 1/iOS Unified 32-bits - device/Release: TimedOut
 * mscorlib Part 1/iOS Unified 32-bits - device/Release: UseThumb: TimedOut
 * mscorlib Part 1/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (release): TimedOut
 * mscorlib Part 1/iOS Unified 32-bits - device/Debug: SGenConc: Failed
 * mscorlib Part 2/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug): BuildFailure
 * mscorlib Part 2/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug): BuildFailure
 * mscorlib Part 2/iOS Unified 32-bits - device/AssemblyBuildTarget: dylib (debug, profiling): BuildFailure
 * mscorlib Part 2/iOS Unified 32-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): BuildFailure
 * mscorlib Part 2/iOS Unified 32-bits - device/Debug: SGenConc: BuildFailure
</details>


Here is an article which explains it: https://docs.appimage.org/introduction/concepts.html#build-on-old-systems-run-on-newer-systems


--qpfile instead of --qp-file


Is that why the build failed?


bo tylko w init można definiować nowe poperty, zostaw jak było bo nie będzie można parametryzować rate @gjasinski


In mainserver.cpp, before the "return false", the locks inputsLock and addChildInputLock. However, these two locks are not unlocked before the "return false" statements in lines 3273, 3288 and 3310. This looks like a bug.


Deploy preview for _website_ ready!

Built with commit 53c01b21ffa480a39d3b98a9d626624b84252bab

https://shopware-pwa-2m1bwelf7.now.sh


to się tu wywali, musi być jak było


Copy of this build can be found at
https://www.mewbuilds.com/build/031e666c0005ee0d9f2300e00d1d047c43e4adc5/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmaZAt9fz3o7EuCJuMekfv484ADBjxUVuNiERexKkXbNs9
                       Virus Total analysis
                       https://www.virustotal.com/file/85973a2cc2b57e7434946ffec446ab0c9207415b7108c745c1afca69e5a3f6b4/analysis/1580155331/


--lp


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* https://www.tembo.ai
* https://tembo-site.tembo.now.sh
* https://tembo-site-git-master.tembo.now.sh


--ss


--lp and --ss


Yes, there were keys, now they are gone, reduced to atoms.
They're all disabled now, so don't even think of trying anything


> > Any chance the gestural navbar pill can be hidden on lockscreen and on ambient? Shows up sometimes.
>
> Afaik that never happened here mate!

Ok. Thanks for the reply.


Thanks.
I ve notecied the bug with normal maps which occurs after 1 or 2 hours in game. (i think constant quickloads may trigger it)
Visually it looks some of materials load random normal maps. For example, the grass renders with planks normal map.


> good bless you[click here](%22www.google.com%22)

wtf


Swiftでは`self`は省略可能なので、書かないことがお作法になっていたりします💁♂


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Actividad Inicial de Java POO.


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Failed to assign a domain to your deployment due to the following error:

~~~
The domain tembo.ai is not verfied and cannot be used as an alias.
~~~

([Learn more](https://zeit.co/tembo/tembo-site/30g8zyw5p) or [visit](https://tembo-site-30g8zyw5p.now.sh) the non-aliased deployment)


<img width="1783" alt="スクリーンショット 2020-01-26 18 06 33" src="https://user-images.githubusercontent.com/37067845/73133177-790ea200-4068-11ea-9908-9d02a818b543.png">


ここ以外のfunctionについてもそうですが、当該クラス外から参照しない場合には適切なアクセス修飾子として`private`を付けつるとよいでしょう💡
https://dev.classmethod.jp/references/ios8-swift-access-control/


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* https://5thdapp-git-master.dapp5th.now.sh


See discussion in Discord


強制アンラップはあまり使用すべきではない。というのがプログラミング的な考え方です🙅♂
何故なら例外ケースを考慮しないことと同義なので、そこがバグの温床になってしまうリスクがあるためですね。
そのため、ここではオプショナルバインディング(Optinal-Binding)を使用して強制アンラップを避けるようにしましょう💁♂
https://qiita.com/hachinobu/items/2ecfc5999327fff20837


위의 `if {}` 구문에서 입력값이 이상하다면 알림창을 띄운후 `return;` 으로 함수를 종료하기 때문에
`else {}` 구문으로 감싸줄 필요는 없어요~ `else` 제거 한 후 `add_table()` 함수 호출로 변경해보세요~


Instead of `open`, use `sealed`.
Also, class names must always follow `UpperCamelCase` rule:`CVReading`


This does work but I need to add the setting for addablockposition, too.


See above.


gooooooood~!!


See https://raymii.org/s/blog/Cancellation_notice_for_cipherlist_ssldecoder_and_certificatemonitor.html

As alternative solutions I have setup https://cipherlist.daniel-ruf.de and https://ssldecoder.daniel-ruf.de and I plan to manage them for a long time.


次は何すればいいんだろ


The name `sendData` implies "sending", whilst this function's role is to retrieve readings from the CV sensor.
Maybe rename it to `modeChanges`, since it only reports that.


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* https://pavinthandev-git-master.pavinthan.now.sh


Specify const should work. My gcc tool-chain may be out-of-date but there is no newer one officially supported.
`salimterryli@STL-Laptop:/media/salimterryli/dev-linux/px4/Firmware-master$ arm-linux-gnueabihf-gcc -v
Using built-in specs.
COLLECT_GCC=arm-linux-gnueabihf-gcc
COLLECT_LTO_WRAPPER=/opt/rpi_toolchain/gcc-linaro-arm-linux-gnueabihf-raspbian/bin/../libexec/gcc/arm-linux-gnueabihf/4.8.3/lto-wrapper
Target: arm-linux-gnueabihf
Configured with: /home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/src/gcc-linaro-4.8-2014.03/configure --build=x86_64-build_unknown-linux-gnu --host=x86_64-build_unknown-linux-gnu --target=arm-linux-gnueabihf --prefix=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/install --with-sysroot=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/install/arm-linux-gnueabihf/libc --enable-languages=c,c++,fortran --disable-multilib --enable-multiarch --with-arch=armv6 --with-tune=arm1176jz-s --with-fpu=vfp --with-float=hard --with-pkgversion='crosstool-NG linaro-1.13.1+bzr2650 - Linaro GCC 2014.03' --with-bugurl=https://bugs.launchpad.net/gcc-linaro --enable-__cxa_atexit --enable-libmudflap --enable-libgomp --enable-libssp --with-gmp=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/arm-linux-gnueabihf/build/static --with-mpfr=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/arm-linux-gnueabihf/build/static --with-mpc=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/arm-linux-gnueabihf/build/static --with-isl=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/arm-linux-gnueabihf/build/static --with-cloog=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/arm-linux-gnueabihf/build/static --with-libelf=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/.build/arm-linux-gnueabihf/build/static --enable-threads=posix --disable-libstdcxx-pch --enable-linker-build-id --enable-plugin --enable-gold --with-local-prefix=/home/zhehe01/work/bzr/pi-build/builds/arm-linux-gnueabihf-raspbian-linux/install/arm-linux-gnueabihf/libc --enable-c99 --enable-long-long --with-float=hard
Thread model: posix
gcc version 4.8.3 20140303 (prerelease) (crosstool-NG linaro-1.13.1+bzr2650 - Linaro GCC 2014.03)`


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> > Anybody building a slimmed down iiab could just do the install steps by hand, (git clone, edit local_vars to suit, ansible, iiab-install) thereby omitting admin-console, and ka-lite's setup.
>
> Not when they don't have these skills :/
>
> Should be a pretty simple change to https://github.com/iiab/iiab-factory/blob/master/iiab

Grepping for the state of a flag within local_vars is do-able but somewhat hackish. Now tucking admin-console's install into a role would make sense if you really wanted that admin_console_install flag then you could do something about related dependencies, forcing those apps to install along with admin-console. No I'm not planning to do that but could provide guidance should someone want to try.


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thx @jean-emmanuel. I did see a lot of flashes especially in fullscreen mode, on a specific PC.

I'll retest it


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@jean-emmanuel can you add a warning at startup so that we know that we are using a deprecated syntax? otherwise, big session files will be hard to debug

thx!


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записывать результат деления в int - глупо. Почему ты используешь double, если потом приведешь его к типу int


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remove_objexx_gio__3 (lefticus) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-UnitTestsCoverage-Debug: OK (1270 of 1270 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-43.7%25-green.png)


Published
https://github.com/Homebrew/homebrew-core/pull/49400


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@JuliaRegistrator register()


Registration pull request created: [JuliaRegistries/General/8450](https://github.com/JuliaRegistries/General/pull/8450)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v1.0.2 -m "<description of version>" f923c26440dc35312e1f80b9cea597e510aceac4
git push origin v1.0.2
```
Also, note the warning: Version 1.0.2 skips over 1.0.1
This can be safely ignored. However, if you want to fix this you can do so. Call register() again after making the fix. This will update the Pull request.


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`read_file()` or `read_config()`? Makes more sense. Will have a go this arvo, never messed with the magic in weewxd though.


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> Yes.
> I asked the people, told me that in this context "move" does not do anything.

Oh, maybe it's the same case as this thread on StackOverflow?
https://stackoverflow.com/questions/11572669/move-with-vectorpush-back


As of this commit, positions of objects don't update during sliding which means when trying to position or scale elements you don't get a live feed of what your changes are doing in the preview window. I think this method may be even worse in some ways than everything being stutter-y while sliding.


![Difference between blocks](https://raw.githubusercontent.com/daniel-stewart/maze-game/fc969a6f9fbcd01e96fb2c656729a41149719f7a/.makecode/blocksdiff.png)


Successfully deployed to following URLs:

* https://plate-app-fzfl5n06z.now.sh
* https://plate-app.now.sh
* https://plate-app.knipferrc.now.sh
* https://plate-app-git-master.knipferrc.now.sh


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* https://dress-shop-git-master.jrussclay.now.sh


I believe it's better to let the user set the command in a text edit (like the clang-format binary config in the preference window) instead of a file dialog, since there may be tons of files in `/usr/bin` which may slow the GUI dialog and it's easier to type `cf` instead of the full path if it's in the system PATH.


Опять-таки, если промсто поменять в феврале количество дней, то мы избавимся от необязательного дублирования кода


Еще чуть изящней можно сделать так:
```
while (new_number = fibs_hundred [-1] + fibs_hundred [-2]) < 100
  fibs_hundred << new_number
end
```


Лишняя пустая строка, из-за нее следующий блок кода воспринимается в отрыве от `else`


oh god oh f uc


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* https://slm.ilkermpolat.now.sh
* https://slm-git-master.ilkermpolat.now.sh


А давай именно вычислим индексы, а не просто их запишем?


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* https://roman-numerals-app-173dcz8xs.now.sh
* https://roman-numerals-app.now.sh
* https://roman-numerals-app.shalanazim.now.sh
* https://roman-numerals-app-git-master.shalanazim.now.sh


Span'ы здесь и ниже добавлены согласно заданию: Для разметки незнакомых интерактивных элементов вне форм можно использовать тег span.


Deployment failed with the following error:

~~~
ELOOP: too many symbolic links encountered, stat '/tmp/EAGHUlh3DEHoiELJZRkzWE7i/repo/tax-time'
~~~


Ilyen profilképpel én nem commitolnék semmit sem


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* https://notion-blog-ps56y647l.now.sh
* https://shunsuketakagi.com
* https://notion-blog.tkgshn.now.sh
* https://notion-blog-git-master.tkgshn.now.sh


ok


Good to have someone else looking at the code, thanks :+1:


It looks really neat now! 😄


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* https://slm-68554spx1.now.sh
* https://slm-three.now.sh
* https://slm.ilkermpolat.now.sh
* https://slm-git-master.ilkermpolat.now.sh


@Mottie ^


different HTML tags should have unique ID's - you gave 3 different tags the same id here


@juliaregistrator register()


сменил адрес


To use this tool :
cd Mh-Tool
Python MH.py


Why can't this be installed globally?


Again, why not installed globally?


These should probably be in /usr/share or in a Python global path.


[AppVeyor has built](https://ci.appveyor.com/project/cypress-io/cypress/builds/30385843/job/o27pi85yi218nx9w) the `win32 x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    Instructions are included below, depending on the shell you are using.

    In Command Prompt (`cmd.exe`):

      set CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.4/win32-x64/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.zip
      npm install https://cdn.cypress.io/beta/npm/3.8.4/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.tgz

    In PowerShell:

      $env:CYPRESS_INSTALL_BINARY = https://cdn.cypress.io/beta/binary/3.8.4/win32-x64/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.zip
      npm install https://cdn.cypress.io/beta/npm/3.8.4/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.tgz

    In Git Bash:

      export CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.4/win32-x64/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.zip
      npm install https://cdn.cypress.io/beta/npm/3.8.4/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.tgz

    If the above commands do not work for you, you can also try using `cross-env`:

      npm i -g cross-env
      cross-env CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.4/win32-x64/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.zip npm install https://cdn.cypress.io/beta/npm/3.8.4/appveyor-fix-win-install-message-cd955db8d07e14e9ba090563f9cd007c7c949b41-30385843/cypress.tgz


Indeed I do, I simply saw this in the *latest* code and clicked blame to be able to comment. Seemed like the simplest way to raise attention to it.


> So what happens if the receiver doesn't go to the shop? The sender's Ether is stuck forever? Add a function to cancel a remittance; which allows the sender to withdraw the balance only after a certain expiration limit.

Will be included in next submission. It took me a while to figure out hout to test this. I finally got that working, but still need to add a few other requested things.


This is wrong. Will change to the way it was before. My bad for merging without verifying.


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* https://tejaskumar.com
* https://www.tejaskumar.com
* https://xn--pn8hl7g.ws
* https://tejaskumarcom.tejask.now.sh
* https://tejaskumarcom-git-master.tejask.now.sh


### :x: 2 / 9 Rules Failed

##### :octocat: Include Mandatory Files: CODEOWNERS

##### :bookmark_tabs: Use Angular’s commit message convention

      :point_right: You can review your rules settings at smart policy management :point_left:

:point_right: click here to view a full list of the events :point_left:


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* https://smart-reads-n3oceh23l.now.sh
* https://smart-reads.now.sh
* https://smart-reads.emmazarate.now.sh
* https://smart-reads-git-master.emmazarate.now.sh


So now we pull by default 20 records from the database, then chunk them into 10 or less items, then split them into batches according to how much parallelisation the EE can handle. Would be good to put this `minChunkSize` (which I guess is now more like a `maxChunkSize`) into the config as well, so you can put it up if it turns out the EE sweet spot is higher than 10 / CPUs for example.


Successfully deployed to following URLs:

* https://jobsite-cobvawo3g.now.sh
* https://jobsite.now.sh
* https://jobsite.dylandamsma.now.sh
* https://jobsite-git-master.dylandamsma.now.sh


That does simplify things a lot!


That's true, will change.


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* https://hexo-hyvteeoqz.now.sh
* https://hexo-pi.now.sh
* https://lfmingo.now.sh
* https://hexo.fernandodemingo.now.sh
* https://hexo-git-master.fernandodemingo.now.sh


I need this commit to like that to point to it. I will revert it now


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* https://grimp-website-hfc7gkp62.now.sh
* https://grimp.io
* https://grimp.co
* https://grimp.app
* https://www.grimp.io
* https://www.grimp.app
* https://www.grimp.co
* https://ws-admin.grimp.io
* https://grimp-website.grimp.now.sh
* https://grimp-website-git-master.grimp.now.sh


Successfully deployed to following URLs:

* https://dreamineeringcom-5gt01xc8b.now.sh
* https://dreamineering.com
* https://www.dreamineering.com
* https://dreamineeringcom.dreamineering.now.sh
* https://dreamineeringcom-git-master.dreamineering.now.sh


170926542_Issue7681 (mitchute) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: OK (2657 of 2657 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)