[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/nLTTDiff.R:59:27:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


Successfully deployed to following URLs:

* https://chat-app-fe-bwww0xrkc.now.sh
* https://chat-app-fe-psi-beige.now.sh
* https://chat-app-fe.abhinandshetty.now.sh
* https://chat-app-fe-git-dev.abhinandshetty.now.sh


https://developer.apple.com/documentation/uikit/uiapplication/1623042-opensettingsurlstring

Doesn't seem deprecated. It is only iOS8+ though


Successfully deployed to following URLs:

* https://website-4ofsokmt3.now.sh
* https://surabayajs.org
* https://website.surabayajs.now.sh
* https://website-git-master.surabayajs.now.sh


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @sgsokol was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


Lol. ![image](https://user-images.githubusercontent.com/5070096/71899315-66eec180-3196-11ea-9cca-15b16be4ffeb.png)


Hi! This is the friendly automated conda-forge-webservice.

I updated the Github team because of this commit.

- @duncanmmacleod was added to this feedstock maintenance team.

You should get push access to this feedstock and CI services.

Feel free to join the community [chat room](https://gitter.im/conda-forge/conda-forge.github.io).

NOTE: Please make sure to not push to the repository directly.
      Use branches in your fork for any changes and send a PR.
      More details [here](https://conda-forge.org/docs/maintainer/updating_pkgs.html#forking-and-pull-requests)


What about moving the repos under crocs-muni profile? And I suggest a "rhyming" name, e.g. .open-source-development-course-hw02-1'. Do you have the sufficient privileges?


Outstanding work!


괄호변환 python으로도 한 번 풀어보세요!


Do you think it would be good to have these dates as parameters?


Successfully deployed to following URLs:

* https://iteamse-poc-nig6ecvp6.now.sh
* https://iteamse-poc-git-master.iteam.now.sh


macOS build available: [multipass-1.1.0-dev.533+g12857302.mac-Darwin.pkg](https://transfer.sh/8mhpO/multipass-1.1.0-dev.533+g12857302.mac-Darwin.pkg)


Add the location of the TODOs. For sure it's `ossdev/__init__.py` and something in tests (and a TODO line there as well, please). Why is the empty file `ossdev/tests/__init__.py` present?
(PS: I find `ossdev` as a rather weird folder name. Would not `vector`, `src` or similar be better?)


Successfully deployed to following URLs:

* https://dutzigithubio-m0oozxpui.now.sh
* https://dutzi.party
* https://dutzigithubio.dutzi.now.sh
* https://dutzigithubio-git-master.dutzi.now.sh


Successfully deployed to following URLs:

* https://stremio-imdb-id-ngsr17eu2.now.sh
* https://stremio-imdb-id.joaolvcm.now.sh
* https://stremio-imdb-id-git-master.joaolvcm.now.sh


Found spelling mistakes in documentation file tutorials/aaa-master-ISDD-1.txt<<
 ISDD handson GitHub
 Found spelling mistakes in documentation file tutorials/aaa-master-ISDD-2.txt<<
 ISDD handson ISDD ISDD


Successfully deployed to following URLs:

* https://dutzigithubio-c7sb4wsfx.now.sh
* https://dutzi.party
* https://dutzigithubio.dutzi.now.sh
* https://dutzigithubio-git-master.dutzi.now.sh


Yeah something is missing here maybe a lack of understanding, i truly understand why @ohld try to close me down if he really thinks he own the code, but he made is open-source which means everybody can do anything with it..

He have said for months now that is break his license and i should include this and that in my repo which is non-sense.. I use open-source library so stuff like this "demands" does not happen to my project.

He has tried many time to get me to sign over my code to his organization proof:
https://i.ibb.co/NL6nfxh/Screenshot-2020-01-07-Telegram-Web.png

which is totally non-sense and a real lack of understanding of his own license.


Successfully deployed to following URLs:

* https://ccc-1vpaker57.now.sh
* https://ccc.zeit-github-test-dev1.now.sh
* https://ccc-git-master.zeit-github-test-dev1.now.sh


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v2-without-alias-nhiqxvwsj.now.sh
* https://github-e2e-tests-dev-alias-v2-without-alias.zeit-github-test-dev1.now.sh
* https://github-e2e-tests-dev-alias-v2-without-alias-git-master.zeit-github-test-dev1.now.sh


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v2-with-alias-8sh935ozd.now.sh
* https://z-github-e2e-tests-dev-alias-v2-with-alias.now.sh
* https://github-e2e-tests-dev-alias-v2-with-alias.zeit-github-test-dev1.now.sh
* https://github-e2e-tests-dev-alias-v2-with-alias-git-master.zeit-github-test-dev1.now.sh


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v1-with-alias-vudyerwvfx.now.sh
* https://z-github-e2e-tests-dev-only.now.sh


Failed to assign a domain to your deployment due to the following error:

~~~
The domain pdy5dr0luf.com is not verfied and cannot be used as an alias.
~~~

([Learn more](http://localhost:3000/zeit-github-test-dev/github-e2e-test-dev-domain-issues/j65m90cmn) or [visit](https://github-e2e-test-dev-domain-issues-j65m90cmn.now.sh) the non-aliased deployment)


This is awkward to write, but I noticed you rewrote my commit. 😅

Writing the language name with a lowercase 'b' was intentional on my part, it's like Spanish in that names of language are always written lowercase.


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v1-with-alias-aaxlnwptil.now.sh
* https://z-github-e2e-tests-dev-only.now.sh


Failed to assign a domain to your deployment due to the following error:

~~~
The domain goau5b0fs8.com is not verfied and cannot be used as an alias.
~~~

([Learn more](http://localhost:3000/zeit-github-test-dev/github-e2e-test-dev-domain-issues/d8pg4nu1f) or [visit](https://github-e2e-test-dev-domain-issues-d8pg4nu1f.now.sh) the non-aliased deployment)


Successfully deployed to following URLs:

* https://tsps-69u90ezvo.now.sh
* https://tsps.now.sh
* https://tsps.wangchenxu.now.sh
* https://tsps-git-master.wangchenxu.now.sh


Hi!
The new "width" value for img seems to break images that doesn't perfectly fit the card's size. (it stretches them up). Was it an intended change?
It seems we now have to use !important or inline styles to override this behaviour, so I'd rather ask you first before making such changes!

Thank you in advance


I am kinda new at the Thunderbird building of extensions.  90 percent of the extensions that I use have now become useless because of update 68.3.1 release. Your experimental fork does exactly what I want in a restart extension. I would love to build it but am not sure.  Can you help me?

Thank you in advance,
George


WARNING: [AllowBackup] On SDK version 23 and up, your app data will be automatically backed up and restored on app install. Consider adding the attribute `android:fullBackupContent` to specify an `@xml` resource which configures which files to backup. More info: https://developer.android.com/training/backup/autosyncapi.html
 The `allowBackup` attribute determines if an application's data can be backed up and restored. It is documented at http://developer.android.com/reference/android/R.attr.html#allowBackup

By default, this flag is set to `true`. When this flag is set to `true`, application data can be backed up and restored by the user using `adb backup` and `adb restore`.

This may have security consequences for an application. `adb backup` allows users who have enabled USB debugging to copy application data off of the device. Once backed up, all application data can be read by the user. `adb restore` allows creation of application data from a source specified by the user. Following a restore, applications should not assume that the data, file permissions, and directory permissions were created by the application itself.

Setting `allowBackup="false"` opts an application out of both backup and restore.

To fix this warning, decide whether your application should support backup, and explicitly set `android:allowBackup=(true|false)"`.

If not set to false, and if targeting API 23 or later, lint will also warn that you should set `android:fullBackupContent` to configure auto backup.


WARNING: [GoogleAppIndexingWarning] App is not indexable by Google Search; consider adding at least one Activity with an ACTION-VIEW intent filter. See issue explanation for more details.
 Adds URLs to get your app into the Google index, to get installs and traffic to your app from Google Search.


Thanks.


Add dockerfile and cloud.yml files


So ein Schlingel


added by me


Although there are no existing php unit tests for this task it would make sense to add some that mirror the testing scenarios in the tracker testing instructions.


Successfully deployed to following URLs:

* https://national-parks-aui591nu0.now.sh
* https://national-parks.now.sh
* https://national-parks.jsnkng.now.sh
* https://national-parks-git-master.jsnkng.now.sh


ok go ahead


#textfield will return only one object. Therefore you don't need to use forEach here.


<!-- PMABOT:SOB -->
This commit is missing Signed-Off-By line to indicate that you agree with phpMyAdmin Developer's Certificate of Origin. Please check [contributing documentation](https://github.com/phpmyadmin/phpmyadmin/blob/master/CONTRIBUTING.md) for more information.


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v2-with-alias-ky4rw0gx2.now.sh
* https://z-github-e2e-tests-dev-alias-v2-with-alias.now.sh
* https://github-e2e-tests-dev-alias-v2-with-alias.zeit-github-test-dev1.now.sh
* https://github-e2e-tests-dev-alias-v2-with-alias-git-master.zeit-github-test-dev1.now.sh


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v2-without-alias-njpx12p0v.now.sh
* https://github-e2e-tests-dev-alias-v2-without-alias.zeit-github-test-dev1.now.sh
* https://github-e2e-tests-dev-alias-v2-without-alias-git-master.zeit-github-test-dev1.now.sh


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v1-with-alias-oizcpamwgc.now.sh
* https://z-github-e2e-tests-dev-only.now.sh


Successfully deployed to following URLs:

* https://ccc-8nygtjl9s.now.sh
* https://ccc.zeit-github-test-dev1.now.sh
* https://ccc-git-master.zeit-github-test-dev1.now.sh


Failed to assign a domain to your deployment due to the following error:

~~~
The domain dgspgmchnn.com is not verfied and cannot be used as an alias.
~~~

([Learn more](http://localhost:3000/zeit-github-test-dev/github-e2e-test-dev-domain-issues/93i96rxir) or [visit](https://github-e2e-test-dev-domain-issues-93i96rxir.now.sh) the non-aliased deployment)


@JuliaRegistrator register(branch="release-0.7")


if that's the case this should be reverted to avoid problems with the editor, I've already seen errors related to this printed in the editor


Flipped sign


`$dt->setLibraryId('_compo_');`
 `$this->jquery->renderView("@framework/main/component.html");`
c'est deux ligne je ne les comprend pas


Negative CR


@Et7f3 I'm working on NixOS, and getting the following error re. reason-font-manager:

```
error: build failed with exit code: 1
  build log:
    # esy-build-package: building: reason-font-manager@2.0.1
    # esy-build-package: pwd: /home/bscholtz/.esy/3_________________________________________________________________/b/reason_font_manager-2.0.1-9da86aa1
    # esy-build-package: running: 'refmterr' 'dune' 'build' '-p' 'reason-font-manager'
             gcc src/FontManagerLinux.o (exit 1)
    (cd _build/default/src && /usr/bin/gcc -I /home/bscholtz/.esy/3_________________________________________________________________/i/ocaml-4.7.1004-a6ae015e/lib/ocaml -fPIC -lstdc++ -g -o FontManagerLinux.o -c FontManagerLinux.cpp)
    FontManagerLinux.cpp:3:10: fatal error: fontconfig/fontconfig.h: No such file or directory
     #include <fontconfig/fontconfig.h>
              ^~~~~~~~~~~~~~~~~~~~~~~~~
    compilation terminated.
    error: command failed: 'refmterr' 'dune' 'build' '-p' 'reason-font-manager' (exited with 1)
    esy-build-package: exiting with errors above...
```

I believe I have the necessary `fontconfig` package installed, so my query is whether this commit "Try fix nix" is a related fix, and if so what the easiest way to try a version of revery with this fix in it would be? I'm using esy to build the project.

Thanks!


Huh. I did test a number of times. Maybe I did some idiotic keyboard
smashing after that but before I committed 🤦♂
--
Jeff Hammond
jeff.science@gmail.com
http://jeffhammond.github.io/


Successfully deployed to following URLs:

* https://sdv-oo257lmj5.now.sh
* https://sdv-iota-one.now.sh
* https://sdv.msroed.now.sh
* https://sdv-git-master.msroed.now.sh


Hey there , @everyone


Successfully deployed to following URLs:

* https://timdeschryverdev-hy6c65nh7.now.sh
* https://timdeschryver.dev
* https://www.timdeschryver.dev
* https://timdeschryverdev.timdeschryver.now.sh
* https://timdeschryverdev-git-master.timdeschryver.now.sh


Successfully deployed to following URLs:

* https://stremio-traktlist-74s1wv2gf.now.sh
* https://stremio-traktlist.now.sh
* https://stremio-traktlist.joaolvcm.now.sh
* https://stremio-traktlist-git-master.joaolvcm.now.sh


Successfully deployed to following URLs:

* https://carbon-website-aqk8ri4vh.now.sh
* https://carbondesignsystem.now.sh
* https://carbon-website.carbon-design-system.now.sh
* https://carbon-website-git-master.carbon-design-system.now.sh


TeamCity MAS / MAS [Build 1.0.0.397](https://teamcity.nice.org.uk/viewLog.html?buildId=63863&buildTypeId=Mas_Mas) outcome was **FAILURE**
Summary: Exit code 1 (Step: Set build number (Command Line)) (new) Build time: 00:01:09


给你留言,

安装doom-eamcs, 装上没有?

https://emacs-china.org/t/20-doom-emacs/11422/4

------------------ 原始邮件 ------------------
发件人: "improve100"<notifications@github.com>;
发送时间: 2020年1月7日(星期二) 上午10:29
收件人: "AbstProcDo/Master-Emacs-From-Scrach-with-Solid-Procedures"<Master-Emacs-From-Scrach-with-Solid-Procedures@noreply.github.com>;
抄送: "Subscribed"<subscribed@noreply.github.com>;
主题: Re: [AbstProcDo/Master-Emacs-From-Scrach-with-Solid-Procedures] add file brief (2e1dc41)

什么时候更新啊。期待。。。

—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub, or unsubscribe.


[AppVeyor has built](https://ci.appveyor.com/project/cypress-io/cypress/builds/29939778/job/semawn0g357etusy) the `win32 x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    set CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.2/win32-x64/appveyor-develop-596c2bd06e1b072936a5e3b6b675a39c3707cf3a-29939778/cypress.zip
    npm install https://cdn.cypress.io/beta/binary/3.8.2/win32-x64/appveyor-develop-596c2bd06e1b072936a5e3b6b675a39c3707cf3a-29939778/cypress.zip


[Circle has built](https://circleci.com/gh/cypress-io/cypress/226925) the `linux x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    export CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.2/linux-x64/circle-develop-596c2bd06e1b072936a5e3b6b675a39c3707cf3a-226922/cypress.zip
    npm install https://cdn.cypress.io/beta/npm/3.8.2/circle-develop-596c2bd06e1b072936a5e3b6b675a39c3707cf3a-226881/cypress.tgz


[AppVeyor has built](https://ci.appveyor.com/project/cypress-io/cypress/builds/29939778/job/92tcd2nh5wr4kenl) the `win32 ia32` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    set CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.2/win32-ia32/appveyor-develop-596c2bd06e1b072936a5e3b6b675a39c3707cf3a-29939778/cypress.zip
    npm install https://cdn.cypress.io/beta/binary/3.8.2/win32-ia32/appveyor-develop-596c2bd06e1b072936a5e3b6b675a39c3707cf3a-29939778/cypress.zip


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


`<%@page import="test.member.dao.MemberDao"%>
<%@page import="test.member.dto.MemberDto"%>
<%@page import="java.util.List"%>
<%@ page language="java" contentType="text/html; charset=UTF-8"
    pageEncoding="UTF-8"%>

<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">

<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>/member/list.jsp</title>
<link rel="stylesheet" href="${pageContext.request.contextPath }/resources/css/bootstrap.css" />

<%
   	// MemberDao 객체의 참조값 얻어오기
   	MemberDao dao=MemberDao.getInstance();
   	// 회원목록 얻어오기
   	List<MemberDto> list=dao.getList();
%>

		HOME

Member Page

YouTube

Yunstagram

List

List of Member

				Number
				Name
				Address
				UPDATE
				DELETE

		<%for(MemberDto tmp: list){ %>

				<%=tmp.getNum() %>
				<%=tmp.getName() %>
				<%=tmp.getAddr() %>
				<a href="updateform.jsp?num=<%=tmp.getNum() %>">UPDATE
				<a href="delete.jsp?num=<%=tmp.getNum() %>">DELETE

		<%} %>

Add a member

`


You can get Cactbot from this link here:
[https://github.com/quisquous/cactbot/releases](https://github.com/quisquous/cactbot/releases)

Cactbot requires you to use ngld's OverlayPlugin:
[https://github.com/ngld/OverlayPlugin/releases](https://github.com/ngld/OverlayPlugin/releases)

If you're still using the old OverlayPlugin by [RainbowMage](https://github.com/RainbowMage/OverlayPlugin) (last update Dec 2015) or [hibiyasleep](https://github.com/hibiyasleep/OverlayPlugin) (last update Nov 2017), it's about time you switch.

The current one also merges in ACT Websocket so you don't need both ACT WS and OverlayPlugin. This is especially good for streaming if you want to just include a window without capturing your whole desktop. It's also an active project that is adding nice features. It has better focus detection. It can hide during cutscenes. It's got a much nicer updater. It makes it easier to add new events that overlays can use (like who is in your party).


🔥 Device tests completed (Failed) on iOS on [Azure DevOps](https://dev.azure.com/devdiv/DevDiv/_build/index?buildId=3363855)(iOS): [Html Report](http://xamarin-storage/jenkins/xamarin-macios/xcode11.3/5f802ef535488d12886f264b598b9c59ca2f2404/3363855/device-tests/jenkins-results/tests/index.html) 🔥

# Test results

<details>
<summary>3 tests failed, 124 tests passed.</summary>

## Failed tests

 * [NUnit] Mono BCL tests group 2/iOS Unified 64-bits - device/AssemblyBuildTarget: SDK framework (debug, profiling): Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 64-bits - device/Release: Failed
 * [NUnit] Mono BCL tests group 2/iOS Unified 64-bits - device/AssemblyBuildTarget: SDK framework (release): Failed
</details>


Successfully deployed to following URLs:

* https://centrobr42-vk-mini-apps-c15k4rcw3.now.sh
* https://centrobr42-vk-mini-apps.now.sh
* https://centrobr42-vk-mini-apps.alexgorn00.now.sh
* https://centrobr42-vk-mini-apps-git-master.alexgorn00.now.sh


Successfully deployed to following URLs:

* https://hotelsapp-b2rbc3ire.now.sh
* https://hotelsapp.now.sh
* https://hotelsapp.adrianhorizon.now.sh
* https://hotelsapp-git-master.adrianhorizon.now.sh


Successfully deployed to following URLs:

* https://dutzigithubio-pyexlfnwh.now.sh
* https://dutzi.party
* https://dutzigithubio.dutzi.now.sh
* https://dutzigithubio-git-master.dutzi.now.sh


Closes #26


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://ci-839-cgsiweb.pantheonsite.io/)

Created multidev environment [ci-839](https://dashboard.pantheon.io/sites/806fd996-4d92-45f6-a74e-dc88955a747a#ci-839) for cgsiweb.


Successfully deployed to following URLs:

* https://marka-cpevwvpzt.now.sh
* https://marka.now.sh
* https://marka.gregorytmarsh.now.sh
* https://marka-git-master.gregorytmarsh.now.sh


Successfully deployed to following URLs:

* https://componentry-dot-design-c9gevtzs7.now.sh
* https://componentry.design
* https://componentry-dot-design.crystal-ball.now.sh
* https://componentry-dot-design-git-master.crystal-ball.now.sh


It has typo


Successfully deployed to following URLs:

* https://bestie-cvuk78ozf.now.sh
* https://bestie.now.sh
* https://bestie.pashatay.now.sh
* https://bestie-git-master.pashatay.now.sh


Gracias por tu pronta respuesta. Cuantas horas conseguiste de dominio
público? Me parece interesante tu resultado. Estuve trabajando con los
datos de OpenSLR, TEDx, y tus 120h que subiste a Kaggle, ademas del Common
Voice y solo llegue alrededor del 44% de WER. Con los datos de Caito
generalizo demasiado. Qué otras alternativas has encontrado?

Saludos, suerte con tu proyecto de QuartzNet, el paper es muy interesante.

Víctor Noriega.

On Tue, Jan 7, 2020, 3:36 PM Carlos Fonseca <notifications@github.com>
wrote:

> Hola @victornoriega <https://github.com/victornoriega>, es correcto con
> todos los datasets que hay de dominio público y mis datasets privados llego
> al 20% WER en el set de entrenamiento de common voice(lógico no incluido en
> el entrenamiento).
>
> Los datasets de dominio público + los datasets privados que tento soman
> 700h para que tenga una idea de las horas para lograr ese 20%.
>
> Actualmente entreno QuartzNet de Nvidia y a como lo noto creo va a superar
> mis entrenamientos pasados con WER más bajos.
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/carlfm01/my-speech-datasets/commit/441dce6e24b29ed03b22b94e70dfc4187d2bf222?email_source=notifications&email_token=AF4RSQHGQ3LOUNAJP2EWNMLQ4T7VNA5CNFSM4KD4GBIKYY3PNVWWK3TUL52HS4DFVVBW63LNNF2EG33NNVSW45FKMNXW23LFNZ2F62LEZYBC77OM#commitcomment-36699596>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AF4RSQCDWATU2AOR4DH33RTQ4T7VNANCNFSM4KD4GBIA>
> .
>


[R/ABC_SMC.R:11:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/nLTTDiff.R:59:27:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/richelbilderbeek/nLTT/blob/91d3c4cd8940c792d058ad749b70e98fe9f094cd/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


Hi @Kami,

Just to let you know I upgraded to `st3.2dev-49` which uses pymonog==3.10.0 with mongoengine==0.18.2 and internal timer caused the follow exception to be raised.  This is on Ubuntu Bionic.  This is the same error mentioned here https://forum.stackstorm.com/t/is-python3-7-officially-supported-by-stackstorm/938/9

```
2020-01-06 16:42:01,671 140559349558616 ERROR (unknown file) [-] --- Logging error ---
2020-01-06 16:42:01,673 140559349558616 ERROR (unknown file) [-] Traceback (most recent call last):
2020-01-06 16:42:01,673 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,674 140559349558616 ERROR (unknown file) [-]   File "/usr/lib/python3.6/logging/__init__.py", line 994, in emit
2020-01-06 16:42:01,674 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,675 140559349558616 ERROR (unknown file) [-]   File "/usr/lib/python3.6/logging/__init__.py", line 840, in format
2020-01-06 16:42:01,675 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,675 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/logging/formatters.py", line 241, in format
2020-01-06 16:42:01,675 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,677 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/logging/formatters.py", line 151, in _format_extra_attributes
2020-01-06 16:42:01,677 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,677 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/logging/formatters.py", line 65, in serialize_object
2020-01-06 16:42:01,678 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,678 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/models/db/stormbase.py", line 105, in to_serializable_dict
2020-01-06 16:42:01,678 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,678 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/models/db/rule.py", line 122, in mask_secrets
2020-01-06 16:42:01,679 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,680 140559349558616 ERROR (unknown file) [-] AttributeError: 'str' object has no attribute 'get'
2020-01-06 16:42:01,680 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,680 140559349558616 ERROR (unknown file) [-] Call stack:
2020-01-06 16:42:01,681 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/eventlet/greenthread.py", line 221, in main
2020-01-06 16:42:01,682 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,682 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/transport/consumers.py", line 71, in _process_message
2020-01-06 16:42:01,682 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,683 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2reactor/rules/worker.py", line 88, in process
2020-01-06 16:42:01,683 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,683 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2reactor/rules/engine.py", line 40, in handle_trigger_instance
2020-01-06 16:42:01,683 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,684 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2reactor/rules/engine.py", line 89, in enforce_rules
2020-01-06 16:42:01,684 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,685 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2reactor/rules/enforcer.py", line 118, in enforce
2020-01-06 16:42:01,685 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,685 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/log.py", line 105, in func_wrapper
2020-01-06 16:42:01,685 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,686 140559349558616 ERROR (unknown file) [-]   File "/opt/stackstorm/st2/lib/python3.6/site-packages/st2common/log.py", line 167, in _audit
2020-01-06 16:42:01,686 140559349558616 ERROR (unknown file) [-]
2020-01-06 16:42:01,687 140559349558616 ERROR (unknown file) [-] Message: 'Rule enforced. Execution %s, TriggerInstance %s and Rule %s.'
```


Anything shorter than:

```solidity
refundedAmt = msg.value.div(3).mul(3).minus(msg.value);
```

My initial point was that I wanted to get you to find a way to treat the remainder that is sort of agnostic to the `2` or `3`.


I know, DNS is still not serving AAAA. but progress.


:point_right: click here to view a full list of the events :point_left:


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-25-gregory-industries.pantheonsite.io/)

Created multidev environment [pr-25](https://dashboard.pantheon.io/sites/6a63ef8e-11f2-468f-86b6-5973ebf0ffbd#pr-25) for gregory-industries.


<details>

<summary>Submitting the task to Taskcluster failed. Details</summary>

Schema Validation Failed!
Rejecting Schema: https://firefox-ci-tc.services.mozilla.com/schemas/queue/v1/create-task-request.json#
Errors:
  * data.metadata.owner should match format "email"

---

* method:     createTask
* errorCode:  InputValidationError
* statusCode: 400
* time:       2020-01-06T15:49:31.351Z

</details>


RFC 2119 ArrayBuffer(59)

--00000000000016e2e2059b7996a8
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

RFC 2119=C2=A0Ar=
rayBuffer(59<s=
pan style=3D"font-family:consolas,monaco,"andale mono","ubun=
tu mono",monospace;font-size:12px;background-color:rgb(43,43,43);color=
:rgb(254,254,254)">)

--00000000000016e2e2059b7996a8--


[inst/example/long_script.R:58:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/long_script.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
fit.23 <- lm(x2 ~ x3, data = data.frame(x2[, 1], x3[, 1]))
^~~~~~
```
[inst/example/long_script.R:64:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/long_script.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
fit.xx <- lm(A~B, data = x)
^~~~~~
```
[inst/example/long_script.R:70:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/long_script.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
fit_sqrt_A <- lm(I(sqrt(A))~B, data = x)
^~~~~~~~~~
```
[inst/example/simple_script.R:10:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/simple_script.R#L10) *style:* **Variable and function name style should be snake_case.**
```r
fit15.aov <- aov(V1 ~ V2 + V5, data = dat)
^~~~~~~~~
```
[inst/example/simple_script.R:13:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/simple_script.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
tab.12 <- summary(fit12)
^~~~~~
```
[inst/example/simple_script.R:14:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/simple_script.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
tab.13 <- summary(fit13)
^~~~~~
```
[inst/example/simple_script.R:15:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/simple_script.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
tab.14 <- summary(fit14)
^~~~~~
```
[inst/example/simple_script.R:16:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/inst/example/simple_script.R#L16) *style:* **Variable and function name style should be snake_case.**
```r
tab.15 <- append(fit15.aov, tab.14)
^~~~~~
```
[tests/testthat/lib_test.R:13:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/lib_test.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
fit15.aov <- aov(V1 ~ V2 + V5, data = dat)
^~~~~~~~~
```
[tests/testthat/lib_test.R:16:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/lib_test.R#L16) *style:* **Variable and function name style should be snake_case.**
```r
tab.12 <- summary(fit12)
^~~~~~
```
[tests/testthat/lib_test.R:17:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/lib_test.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
tab.13 <- summary(fit13)
^~~~~~
```
[tests/testthat/lib_test.R:18:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/lib_test.R#L18) *style:* **Variable and function name style should be snake_case.**
```r
tab.14 <- summary(fit14)
^~~~~~
```
[tests/testthat/lib_test.R:19:1:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/lib_test.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
tab.15 <- append(fit15.aov, tab.14)
^~~~~~
```
[tests/testthat/test-main.R:3:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L3) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:5:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
    clean.simple.out <- clean(simple.script, "out")
    ^~~~~~~~~~~~~~~~
```
[tests/testthat/test-main.R:14:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
    filepath.out <- get_libs(script)
    ^~~~~~~~~~~~
```
[tests/testthat/test-main.R:31:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:33:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L33) *style:* **Variable and function name style should be snake_case.**
```r
    format.simple.out <- clean(simple.script, "out", format = FALSE)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-main.R:40:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L40) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- readScript(script)
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:42:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L42) *style:* **Variable and function name style should be snake_case.**
```r
    clean.multi <- clean(simple.script, vars, format = FALSE)
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:48:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L48) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:50:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
    novars.out <- capture.output(clean(simple.script))
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:55:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
    long.script <- system.file(
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:58:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x <- clean(long.script, "x")
    ^~~~~~~
```
[tests/testthat/test-main.R:59:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L59) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x2 <- clean(long.script, "x2")
    ^~~~~~~~
```
[tests/testthat/test-main.R:60:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L60) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x3 <- clean(long.script, "x3")
    ^~~~~~~~
```
[tests/testthat/test-main.R:61:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L61) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x2x3 <- clean(long.script, c("x2", "x3"))
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:62:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L62) *style:* **Variable and function name style should be snake_case.**
```r
    clean.z <- clean(long.script, "z")
    ^~~~~~~
```
[tests/testthat/test-main.R:69:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L69) *style:* **Variable and function name style should be snake_case.**
```r
    env.long <- new.env()
    ^~~~~~~~
```
[tests/testthat/test-main.R:70:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
    env.x <- new.env()
    ^~~~~
```
[tests/testthat/test-main.R:71:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L71) *style:* **Variable and function name style should be snake_case.**
```r
    env.x2 <- new.env()
    ^~~~~~
```
[tests/testthat/test-main.R:72:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L72) *style:* **Variable and function name style should be snake_case.**
```r
    env.x3 <- new.env()
    ^~~~~~
```
[tests/testthat/test-main.R:73:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L73) *style:* **Variable and function name style should be snake_case.**
```r
    env.x2x3 <- new.env()
    ^~~~~~~~
```
[tests/testthat/test-main.R:74:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L74) *style:* **Variable and function name style should be snake_case.**
```r
    env.z <- new.env()
    ^~~~~
```
[tests/testthat/test-main.R:102:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L102) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:105:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L105) *style:* **Variable and function name style should be snake_case.**
```r
    var.files <- paste0(vars, "_clean.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:106:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L106) *style:* **Variable and function name style should be snake_case.**
```r
    var.vars <- list()
    ^~~~~~~~
```
[tests/testthat/test-main.R:108:9:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L108) *style:* **Variable and function name style should be snake_case.**
```r
        var.clean <- clean(simple.script, vars[i])
        ^~~~~~~~~
```
[tests/testthat/test-main.R:110:9:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L110) *style:* **Variable and function name style should be snake_case.**
```r
        var.env <- new.env()
        ^~~~~~~
```
[tests/testthat/test-main.R:115:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L115) *style:* **Variable and function name style should be snake_case.**
```r
    var.check <- logical()
    ^~~~~~~~~
```
[tests/testthat/test-main.R:127:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L127) *style:* **Variable and function name style should be snake_case.**
```r
    long.script <- system.file(
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:130:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
    var.files <- paste0(vars, "_clean.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:131:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L131) *style:* **Variable and function name style should be snake_case.**
```r
    var.vars <- list()
    ^~~~~~~~
```
[tests/testthat/test-main.R:133:9:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
        var.clean <- clean(long.script, vars[i])
        ^~~~~~~~~
```
[tests/testthat/test-main.R:135:9:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L135) *style:* **Variable and function name style should be snake_case.**
```r
        var.env <- new.env()
        ^~~~~~~
```
[tests/testthat/test-main.R:140:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L140) *style:* **Variable and function name style should be snake_case.**
```r
    var.check <- logical()
    ^~~~~~~~~
```
[tests/testthat/test-main.R:154:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L154) *style:* **Variable and function name style should be snake_case.**
```r
    glist.out <- Rclean:::get_path(vl, "out")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:162:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L162) *style:* **Variable and function name style should be snake_case.**
```r
    noid.out <- testthat:::capture_output({Rclean:::get_path(vl)},
    ^~~~~~~~
```
[tests/testthat/test-main.R:170:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L170) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:172:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L172) *style:* **Variable and function name style should be snake_case.**
```r
    output.cap <- capture.output(
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:180:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L180) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:182:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L182) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- readScript(simple.script)
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:183:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L183) *style:* **Variable and function name style should be snake_case.**
```r
    output.cap <- capture.output(
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:190:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L190) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:201:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L201) *style:* **Variable and function name style should be snake_case.**
```r
    keep.test <- readLines("clean.simple.test.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:212:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L212) *style:* **Variable and function name style should be snake_case.**
```r
    vars.test <- get_vars(script)
    ^~~~~~~~~
```
[tests/testthat/test-main.R:223:5:](https://github.com/MKLau/Rclean/blob/879db9c3e7aa357acdaaf811f32e14cf910a271f/tests/testthat/test-main.R#L223) *style:* **Variable and function name style should be snake_case.**
```r
    vars.test <- get_vars(script)
    ^~~~~~~~~
```


Successfully deployed to following URLs:

* https://range-wizard-client-bmi00gj27.now.sh
* https://range-wizard-client.now.sh
* https://range-wizard-client.djllap.now.sh
* https://range-wizard-client-git-master.djllap.now.sh


Deploy preview for _website_ ready!

Built with commit f942de3f364e577fbbd8ff21aa92d12e33f43417

https://atlas-jfcr7dqum.now.sh


Looks like you don't need to import `monotonically_increasing, monotonically_decreasing`


>
>
> Oh no, don't get me wrong, I never denied that. We all know where Helix originates from.
> It's just that you mentioned in the past that the schema wasn't converted, but instead remade from scratch, yet this commit hints otherwise.

Again, Helix is a fork and we developed the Schema before it was renamed.


Deployment failed with the following error:

~~~
The property `builds` is only allowed on Now 2.0 — please upgrade: https://zeit.co/upgrade
~~~


Successfully deployed to following URLs:

* https://dnda-project-2gmik06tj.now.sh
* https://dnda-project.now.sh
* https://dnda-project.vlasovproger.now.sh
* https://dnda-project-git-master.vlasovproger.now.sh


Also I would like to swap `if / else` branches to switch from `!=` to `==`. Fewer negatives - easier to read.


Successfully deployed to following URLs:

* https://front-end-o3q5ifvum.now.sh
* https://front-end-kappa-nine.now.sh
* https://front-end.smcguire1826.now.sh
* https://front-end-git-master.smcguire1826.now.sh


## Plan result [CI link]( https://circleci.com/gh/ryo1620/workout_app/253 )

No changes. Infrastructure is up-to-date.

Details (Click me)

Acquiring state lock. This may take a few moments...
Refreshing Terraform state in-memory prior to plan...
The refreshed state will be used to calculate this plan, but will not be
persisted to local or remote state storage.

data.aws_iam_policy_document.eks_assume_role: Refreshing state...
data.aws_route53_zone.workout11: Refreshing state...
aws_ecr_repository.workout11: Refreshing state... [id=workout11-repo]
data.aws_iam_policy_document.eks_fargate_assume_role: Refreshing state...
aws_iam_policy.external_dns_iam_policy: Refreshing state... [id=arn:aws:iam::012055136996:policy/ExternalDNSIAMPolicy]
aws_vpc.workout11: Refreshing state... [id=vpc-0beab9a7a881b6d81]
aws_cloudwatch_log_group.workout11: Refreshing state... [id=/aws/eks/workout11-eks/cluster]
aws_db_parameter_group.workout11: Refreshing state... [id=workout11-db-parameter-group]
aws_dynamodb_table.tfstate: Refreshing state... [id=workout11-tfstate]
aws_iam_policy.alb_ingress_controller_iam_policy: Refreshing state... [id=arn:aws:iam::012055136996:policy/ALBIngressControllerIAMPolicy]
aws_kms_key.workout11: Refreshing state... [id=1814963e-29b5-46cf-aab0-655dfd2eb7e6]
aws_s3_bucket.tfstate: Refreshing state... [id=workout11-tfstate]
aws_iam_role.eks_fargate_pod_execution_role: Refreshing state... [id=eks-fargate-pod-execution]
aws_iam_role.eks_role: Refreshing state... [id=eks-master]
aws_acm_certificate.workout11: Refreshing state... [id=arn:aws:acm:ap-northeast-1:012055136996:certificate/51138d54-2342-4dcd-a905-6b664caefe8a]
aws_iam_role_policy_attachment.eks_fargate_pod_execution: Refreshing state... [id=eks-fargate-pod-execution-20191231135454222500000002]
aws_iam_role_policy_attachment.cluster_AmazonEKSServicePolicy: Refreshing state... [id=eks-master-20191231135454249300000004]
aws_iam_role_policy_attachment.cluster_AmazonEKSClusterPolicy: Refreshing state... [id=eks-master-20191231135454240400000003]
aws_ecr_lifecycle_policy.workout11: Refreshing state... [id=workout11-repo]
aws_route53_record.workout11_certificate: Refreshing state... [id=Z17R07MY85WBCS__18a521abb2cc9ccf922022e63328e5da.workout11.com._CNAME]
aws_acm_certificate_validation.workout11: Refreshing state... [id=2019-12-31 13:57:09 +0000 UTC]
aws_kms_alias.workout11: Refreshing state... [id=alias/workout11-kubesec]
aws_internet_gateway.workout11: Refreshing state... [id=igw-04e6b298b373a18c6]
aws_route_table.private_1: Refreshing state... [id=rtb-0f472a5427b1afde4]
aws_route_table.private_0: Refreshing state... [id=rtb-0b5e9ca781cba224b]
aws_subnet.public_0: Refreshing state... [id=subnet-0ce1bb8ebea4bcd0d]
aws_route_table.public: Refreshing state... [id=rtb-09af094e64489fb60]
aws_subnet.private_1: Refreshing state... [id=subnet-0973ce6028e73c8d7]
aws_subnet.private_0: Refreshing state... [id=subnet-07b0e96e04014ef22]
module.eks_sg.aws_security_group.default: Refreshing state... [id=sg-08c33d554f3a2a3f1]
module.postgres_sg.aws_security_group.default: Refreshing state... [id=sg-09f98c79edab7294d]
aws_subnet.public_1: Refreshing state... [id=subnet-0ebef4c58ccc24fb3]
module.postgres_sg.aws_security_group_rule.egress: Refreshing state... [id=sgrule-858422768]
module.postgres_sg.aws_security_group_rule.ingress: Refreshing state... [id=sgrule-3938245922]
aws_eip.nat_gateway_0: Refreshing state... [id=eipalloc-0bb8bdb9e185c5d87]
aws_route.public: Refreshing state... [id=r-rtb-09af094e64489fb601080289494]
aws_eip.nat_gateway_1: Refreshing state... [id=eipalloc-0be3c1ff14a190058]
aws_route_table_association.public_0: Refreshing state... [id=rtbassoc-0939242ff93366104]
aws_route_table_association.private_1: Refreshing state... [id=rtbassoc-0673075a203aadd92]
module.eks_sg.aws_security_group_rule.egress: Refreshing state... [id=sgrule-1933888031]
module.eks_sg.aws_security_group_rule.ingress: Refreshing state... [id=sgrule-3921160810]
aws_db_subnet_group.workout11: Refreshing state... [id=workout11-db-subnet-group]
aws_route_table_association.private_0: Refreshing state... [id=rtbassoc-035f36966deca920a]
aws_eks_cluster.workout11: Refreshing state... [id=workout11-eks]
aws_route_table_association.public_1: Refreshing state... [id=rtbassoc-007592d35fd8be61c]
aws_nat_gateway.nat_gateway_1: Refreshing state... [id=nat-02c0d408504a3467d]
aws_nat_gateway.nat_gateway_0: Refreshing state... [id=nat-06f80fbffebdf8077]
aws_route.private_1: Refreshing state... [id=r-rtb-0f472a5427b1afde41080289494]
aws_route.private_0: Refreshing state... [id=r-rtb-0b5e9ca781cba224b1080289494]
aws_eks_fargate_profile.workout11: Refreshing state... [id=workout11-eks:workout11-eks-fargate]
aws_iam_openid_connect_provider.workout11: Refreshing state... [id=arn:aws:iam::012055136996:oidc-provider/oidc.eks.ap-northeast-1.amazonaws.com/id/373B18B17B5C76615D8CEB5803E37A24]
aws_eks_fargate_profile.workout11_kube_system: Refreshing state... [id=workout11-eks:workout11-eks-fargate-kube-system]
data.aws_iam_policy_document.tfstate: Refreshing state...
aws_s3_bucket_policy.tfstate: Refreshing state... [id=workout11-tfstate]
data.aws_iam_policy_document.oidc_assume_role: Refreshing state...
aws_iam_role.oidc_role: Refreshing state... [id=oidc-eks]
aws_iam_role_policy_attachment.oidc_ExternalDNSIAMPolicy: Refreshing state... [id=oidc-eks-20200103134710955400000001]
aws_iam_role_policy_attachment.oidc_ALBIngressControllerIAMPolicy: Refreshing state... [id=oidc-eks-20200102203319397800000001]
aws_db_instance.workout11: Refreshing state... [id=workout11-postgres]

------------------------------------------------------------------------

No changes. Infrastructure is up-to-date.

This means that Terraform did not detect any differences between your
configuration and real physical resources that exist. As a result, no
actions need to be performed.
Releasing state lock. This may take a few moments...


typo at the end (should be *do to* instead)


Just *developers* is enough I believe


thats


fixed at 3287ad6


Successfully deployed to following URLs:

* https://reacnetgenerator-dlwvms0l1.now.sh
* https://reacnetgenerator.njzjz.now.sh
* https://reacnetgenerator-git-master.njzjz.now.sh


헉 맞네요,,,,그래서 영상출력이 오류가.. 났던것이군요....
내일 다시 공부하고 수정해서 올리겠습니다 감사합니당!!


Is this appropriate in a static context? In Android Studio tests it caused an NPE during ToolWindowId class initialization.


Ok.


Deployment failed with the following error:

~~~
You tried to create a Now 1.0 deployment. Please use Now 2.0 instead: https://zeit.co/upgrade
~~~


thx


@wysohn
the part starting at
`for (int i = 0; i < size; i++) {`
and `while (newIterator.hasNext()) {`
do the same thing (copying the items to the new inventory)
remove one of them


Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `scripts` property.
~~~


Baz


```scala
def getBestValue(line: String): Long = {
  line.replaceAll(" +", " ").split(" ").reverse(5).toLong
}

def printSummary(resultFilePath: String): Unit = {
  val resultFile = new File(resultFilePath)
  val segments = org.apache.spark.sql.catalyst.util.fileToString(resultFile).split("-----.+\n")
  Seq.tabulate(segments.size - 1) { i =>
    val line = segments(i + 1).split("\n")
    val name = segments(i).split("\n").last.reverse.split(":", 2).last.reverse
    val bestTime = getBestValue(line(0))
    val pushDownBestTime = getBestValue(line(1))
    println(s"$name,${bestTime},${pushDownBestTime}")
  }
}

printSummary("/Users/yumwang/opensource/spark/sql/core/benchmarks/ParquetFilterPushdownBenchmark-results.txt")
```


plantFluidToFluidHX (mitchute) - x86_64-Linux-Ubuntu-18.04-gcc-7.4-IntegrationCoverage-Debug: OK (674 of 675 tests passed, 0 test warnings)

Failures:\n

integration Test Summary
 * Passed: 674
 * Timeout: 1

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-99.85%25-yellow.png) ![Coverage Badge](http://img.shields.io/badge/coverage%20status-68.42%25-green.png)


testing


oh,yeah,you are right,thank you for pointing out the mistake,I'll change it at once.it should be
39 | UART4_RXD | SPI1_RXD | GPIO1_A7 | 21


@gerzytet
I literally just uncommented everything and had experimented on this single line. It's your project, so feel free to modify it


Successfully deployed to following URLs:

* https://lunch-selector-88xz5kf7o.now.sh
* https://lunch-selector.alexlied.now.sh
* https://lunch-selector-git-master.alexlied.now.sh