[inst/example/long_script.R:58:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/long_script.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
fit.23 <- lm(x2 ~ x3, data = data.frame(x2[, 1], x3[, 1]))
^~~~~~
```
[inst/example/long_script.R:64:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/long_script.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
fit.xx <- lm(A~B, data = x)
^~~~~~
```
[inst/example/long_script.R:70:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/long_script.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
fit_sqrt_A <- lm(I(sqrt(A))~B, data = x)
^~~~~~~~~~
```
[inst/example/simple_script.R:10:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L10) *style:* **Variable and function name style should be snake_case.**
```r
fit15.aov <- aov(V1 ~ V2 + V5, data = dat)
^~~~~~~~~
```
[inst/example/simple_script.R:13:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
tab.12 <- summary(fit12)
^~~~~~
```
[inst/example/simple_script.R:14:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
tab.13 <- summary(fit13)
^~~~~~
```
[inst/example/simple_script.R:15:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
tab.14 <- summary(fit14)
^~~~~~
```
[inst/example/simple_script.R:16:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L16) *style:* **Variable and function name style should be snake_case.**
```r
tab.15 <- append(fit15.aov, tab.14)
^~~~~~
```
[tests/testthat/lib_test.R:13:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
fit15.aov <- aov(V1 ~ V2 + V5, data = dat)
^~~~~~~~~
```
[tests/testthat/lib_test.R:16:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L16) *style:* **Variable and function name style should be snake_case.**
```r
tab.12 <- summary(fit12)
^~~~~~
```
[tests/testthat/lib_test.R:17:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
tab.13 <- summary(fit13)
^~~~~~
```
[tests/testthat/lib_test.R:18:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L18) *style:* **Variable and function name style should be snake_case.**
```r
tab.14 <- summary(fit14)
^~~~~~
```
[tests/testthat/lib_test.R:19:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
tab.15 <- append(fit15.aov, tab.14)
^~~~~~
```
[tests/testthat/test-main.R:3:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L3) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:5:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
    clean.simple.out <- clean(simple.script, "out")
    ^~~~~~~~~~~~~~~~
```
[tests/testthat/test-main.R:14:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
    filepath.out <- get_libs(script)
    ^~~~~~~~~~~~
```
[tests/testthat/test-main.R:31:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:33:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L33) *style:* **Variable and function name style should be snake_case.**
```r
    format.simple.out <- clean(simple.script, "out", format = FALSE)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-main.R:40:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L40) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- readScript(script)
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:42:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L42) *style:* **Variable and function name style should be snake_case.**
```r
    clean.multi <- clean(simple.script, vars, format = FALSE)
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:48:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L48) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:50:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
    novars.out <- capture.output(clean(simple.script))
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:55:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
    long.script <- system.file(
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:58:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x <- clean(long.script, "x")
    ^~~~~~~
```
[tests/testthat/test-main.R:59:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L59) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x2 <- clean(long.script, "x2")
    ^~~~~~~~
```
[tests/testthat/test-main.R:60:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L60) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x3 <- clean(long.script, "x3")
    ^~~~~~~~
```
[tests/testthat/test-main.R:61:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L61) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x2x3 <- clean(long.script, c("x2", "x3"))
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:62:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L62) *style:* **Variable and function name style should be snake_case.**
```r
    clean.z <- clean(long.script, "z")
    ^~~~~~~
```
[tests/testthat/test-main.R:69:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L69) *style:* **Variable and function name style should be snake_case.**
```r
    env.long <- new.env()
    ^~~~~~~~
```
[tests/testthat/test-main.R:70:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
    env.x <- new.env()
    ^~~~~
```
[tests/testthat/test-main.R:71:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L71) *style:* **Variable and function name style should be snake_case.**
```r
    env.x2 <- new.env()
    ^~~~~~
```
[tests/testthat/test-main.R:72:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L72) *style:* **Variable and function name style should be snake_case.**
```r
    env.x3 <- new.env()
    ^~~~~~
```
[tests/testthat/test-main.R:73:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L73) *style:* **Variable and function name style should be snake_case.**
```r
    env.x2x3 <- new.env()
    ^~~~~~~~
```
[tests/testthat/test-main.R:74:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L74) *style:* **Variable and function name style should be snake_case.**
```r
    env.z <- new.env()
    ^~~~~
```
[tests/testthat/test-main.R:102:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L102) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:105:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L105) *style:* **Variable and function name style should be snake_case.**
```r
    var.files <- paste0(vars, "_clean.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:106:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L106) *style:* **Variable and function name style should be snake_case.**
```r
    var.vars <- list()
    ^~~~~~~~
```
[tests/testthat/test-main.R:108:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L108) *style:* **Variable and function name style should be snake_case.**
```r
        var.clean <- clean(simple.script, vars[i])
        ^~~~~~~~~
```
[tests/testthat/test-main.R:110:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L110) *style:* **Variable and function name style should be snake_case.**
```r
        var.env <- new.env()
        ^~~~~~~
```
[tests/testthat/test-main.R:115:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L115) *style:* **Variable and function name style should be snake_case.**
```r
    var.check <- logical()
    ^~~~~~~~~
```
[tests/testthat/test-main.R:127:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L127) *style:* **Variable and function name style should be snake_case.**
```r
    long.script <- system.file(
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:130:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
    var.files <- paste0(vars, "_clean.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:131:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L131) *style:* **Variable and function name style should be snake_case.**
```r
    var.vars <- list()
    ^~~~~~~~
```
[tests/testthat/test-main.R:133:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
        var.clean <- clean(long.script, vars[i])
        ^~~~~~~~~
```
[tests/testthat/test-main.R:135:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L135) *style:* **Variable and function name style should be snake_case.**
```r
        var.env <- new.env()
        ^~~~~~~
```
[tests/testthat/test-main.R:140:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L140) *style:* **Variable and function name style should be snake_case.**
```r
    var.check <- logical()
    ^~~~~~~~~
```
[tests/testthat/test-main.R:154:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L154) *style:* **Variable and function name style should be snake_case.**
```r
    glist.out <- Rclean:::get_path(vl, "out")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:162:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L162) *style:* **Variable and function name style should be snake_case.**
```r
    noid.out <- testthat:::capture_output({Rclean:::get_path(vl)},
    ^~~~~~~~
```
[tests/testthat/test-main.R:170:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L170) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:172:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L172) *style:* **Variable and function name style should be snake_case.**
```r
    output.cap <- capture.output(
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:180:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L180) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:182:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L182) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- readScript(simple.script)
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:183:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L183) *style:* **Variable and function name style should be snake_case.**
```r
    output.cap <- capture.output(
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:190:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L190) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:201:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L201) *style:* **Variable and function name style should be snake_case.**
```r
    keep.test <- readLines("clean.simple.test.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:212:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L212) *style:* **Variable and function name style should be snake_case.**
```r
    vars.test <- get_vars(script)
    ^~~~~~~~~
```
[tests/testthat/test-main.R:223:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L223) *style:* **Variable and function name style should be snake_case.**
```r
    vars.test <- get_vars(script)
    ^~~~~~~~~
```


Successfully deployed to following URLs:

* https://interface-2kgf9f6d5.now.sh
* https://interface.avantgarde-finance.now.sh
* https://interface-git-master.avantgarde-finance.now.sh


The test in Sabertooth is very sensitive to changes because the first few steps at the beginning of transient have tiny values. If we run it with more time steps and see only tiny changes in the solution, we can regold. Or it is indeed caused by missing proper normalization.


The fix above prevents to save the string null in the db. If we do not rebuild the bd, we need a fix the frontend side.
Also the report.jsp page need the check
`field.value != 'null'`


This seems to have broken binary format of e.g. `01-index.cache`? Shouldn't that be stable? I just wrote a shell script to retrieve the unix timestamp from the binary format, because cabal-install doesn't expose any of it and I don't want to copy paste large chunks of haskell code.


[R/drake_config.R:478:1:](https://github.com/ropensci/drake/blob/f5aa11d1d3b3adf36ee2a993dc4f4f393fc4b74f/R/drake_config.R#L478) *style:* **Lines should not be more than 80 characters.**
```r
#'   then the cache will stay locked, and you will need to manually unlock it with
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Of course it could be done faster and more complicated :-))


PR: https://github.com/laravel/laravel/pull/5201


Successfully deployed to following URLs:

* https://relay-example-hphstzlzo.now.sh
* https://relay-example.adeira.now.sh
* https://relay-example-git-master.adeira.now.sh


Successfully deployed to following URLs:

* https://blog-e3rgx38h1.now.sh
* https://xalo.now.sh
* https://blog.halilyc.now.sh
* https://blog-git-master.halilyc.now.sh


Successfully deployed to following URLs:

* https://project-management-tool-osb86r39c.now.sh
* https://project-management-tool.now.sh
* https://project-management-tool.webistomin.now.sh
* https://project-management-tool-git-master.webistomin.now.sh


Successfully deployed to following URLs:

* https://interface-omtoiyxuh.now.sh
* https://interface.avantgarde-finance.now.sh
* https://interface-git-master.avantgarde-finance.now.sh


Successfully deployed to following URLs:

* https://ripe-components-vue-fkpna6mtc.now.sh
* https://ripe-components-vue.platforme.now.sh
* https://ripe-components-vue-git-master.platforme.now.sh


I advise you to get familiar with capitalization agreements and other stuff
Here are useful links:

https://github.com/ktaranov/naming-convention/blob/master/C%23%20Coding%20Standards%20and%20Naming%20Conventions.md

https://docs.microsoft.com/en-us/dotnet/standard/design-guidelines/naming-guidelines


goood


Basenya apaan ni om?


Oh gatsby yak


Тогда все ок)


Successfully deployed to following URLs:

* https://design-system-n93fr3r6g.now.sh
* https://components.undataforum.org
* https://design-system.undataforum.now.sh
* https://design-system-git-master.undataforum.now.sh


Successfully deployed to following URLs:

* https://now-j4peyfo6z.now.sh
* https://now-rho-two.now.sh
* https://api-frameworks.zeit.sh
* https://now.zeit.now.sh
* https://now-git-master.zeit.now.sh


# Specs execution successful
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### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
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[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


@JanVerderber v NoSQL podatkovnih bazah ni JOIN stavkov.

Namesto tega moraš ali delat dvojne klice v bazo, ali pa podvajat podatke.

Torej, kako bi se lotil tega:

V tabeli WorkspaceUser najdeš vse vnose, kjer je id_user enak ID-ju določenega userja. S tem dobiš tudi ID-je vseh workspace-ov od tega userja, ne dobiš pa titla in sluga od workspace-a. Zato imaš nato dve možnosti:

1. **Možnost A:** za vsak workspace ID narediš nov klic v bazo (preko for zanke), s katerim dobiš ven workspace objekt (ki ima title in slug). Problem tega pristopa je, da se ti poveča število klicev v bazo, kar ni najboljša stvar (vsak klic v bazo nekaj stane).
2. **Možnost B:** Da se izogneš tem dodatnim klicem v bazo, lahko namesto tega v vsak WorkspaceUser objekt poleg ID-ja userja in ID-ja workspacea shraniš še title ter slug od workspace-a. To pomeni, da bosta title in slug bila tako v Workspace modelu, kot tudi v WorkspaceUser modelu. To je podvajanje podatkov, ki v SQL bazah ni zaželjeno, medtem ko v NoSQL bazah pa brez tega ne gre. Sicer probaš to delati čim manjkrat, samo ko je res potrebno, ampak tako pač je. :)


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selectebio


nip: Extracting it to constant or using something like `java.util.concurrent.TimeUnit.SECONDS.toMinutes(carRideStatistics.travelTime.stats.avg)`


No reason. Thanks ;)


TeamCity Identity and Access Management / identity-hostedpages [Build 1124](https://teamcity.nice.org.uk/viewLog.html?buildId=64053&buildTypeId=IdentityandAccessManagement_IdentityHostedpages) is now running


[tests/testthat/test-create_n_mb_species_file.R:15:1:](https://github.com/richelbilderbeek/razzo/blob/ca515d6f4616864824418323aff02176fe961ee1/tests/testthat/test-create_n_mb_species_file.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
        pattern = "razzo_project.results.n_mb_species\\.csv$", filename, perl = TRUE, value = TRUE
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


Возможно. Мы обновляем все задачи из-за выбранной стратегии - обновлять всё разом. Мы так поступаем в rerender, мы так поступаем контроллерах и т.п.


- What will happen if the category code already exists in the database?
- What will happen if some of those fields contain SQL?


![](https://github.trello.services/images/mini-trello-icon.png) [[13056] Ruffina: (Arakis) символы многоточия и кавычек >> обрубают остаток текста в вебредакторе](https://trello.com/c/9CXDqJWO/380-13056-ruffina-arakis-%D1%81%D0%B8%D0%BC%D0%B2%D0%BE%D0%BB%D1%8B-%D0%BC%D0%BD%D0%BE%D0%B3%D0%BE%D1%82%D0%BE%D1%87%D0%B8%D1%8F-%D0%B8-%D0%BA%D0%B0%D0%B2%D1%8B%D1%87%D0%B5%D0%BA-%D0%BE%D0%B1%D1%80%D1%83%D0%B1%D0%B0%D1%8E%D1%82-%D0%BE%D1%81%D1%82%D0%B0%D1%82%D0%BE%D0%BA-%D1%82%D0%B5%D0%BA%D1%81%D1%82%D0%B0-%D0%B2-%D0%B2%D0%B5%D0%B1%D1%80%D0%B5%D0%B4%D0%B0%D0%BA%D1%82%D0%BE%D1%80%D0%B5)


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yeah, I was just thinking the same thing as what you said a little after I wrote that comment. it's still magic, so the only benefit is slightly cleaner syntax and "declaring" your props earlier/at the top of the function.

same with onClick, when you use the react component, it feels like a regular element, yeah. probably fine.


Sorry, the line length of my black is on default, hope that is okay. Also, isort was run on the file.


Input is not validated, always validate all data retrieved from the client.


Why it is called titleName? It should be just title or name.


[tests/testthat/test-create_n_mb_species_file.R:15:1:](https://github.com/richelbilderbeek/razzo/blob/6172b97d2355a3c77695b1a93aa2178e1351a1f5/tests/testthat/test-create_n_mb_species_file.R#L15) *style:* **Lines should not be more than 80 characters.**
```r
        pattern = "razzo_project.results.n_mb_species\\.csv$", filename, perl = TRUE, value = TRUE
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```


remove_objexx_gio (lefticus) - Win64-Windows-10-VisualStudio-16: OK (2596 of 2596 tests passed, 14 test warnings)

Messages:\n
 * 12 tests had: BND diffs.
 * 2 tests had: EIO diffs.
 * 1 test had: MTD diffs.
 * 1 test had: Table small diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


update all files


@nanosoldier `runtests(ALL, isdaily = true)`


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I would recommend a naming suggestion; if you're targeting an element with JavaScript, use `js-` in the classname. This way when you refactor your code, you know if the class is used for `CSS styling` for `JavaScript`.


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Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


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7451_Documentation_2019b (jmarrec) - x86_64-MacOS-10.13-clang: OK (2596 of 2596 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


Please don't give static path


Failed to assign a domain to your deployment due to the following error:

~~~
The domain ep32ierqc7.com is not verfied and cannot be used as an alias.
~~~

([Learn more](http://localhost:3000/zeit-github-test-dev/github-e2e-test-dev-domain-issues/3tealtfox) or [visit](https://github-e2e-test-dev-domain-issues-3tealtfox.now.sh) the non-aliased deployment)


[inst/example/long_script.R:58:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/long_script.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
fit.23 <- lm(x2 ~ x3, data = data.frame(x2[, 1], x3[, 1]))
^~~~~~
```
[inst/example/long_script.R:64:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/long_script.R#L64) *style:* **Variable and function name style should be snake_case.**
```r
fit.xx <- lm(A~B, data = x)
^~~~~~
```
[inst/example/long_script.R:70:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/long_script.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
fit_sqrt_A <- lm(I(sqrt(A))~B, data = x)
^~~~~~~~~~
```
[inst/example/simple_script.R:10:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L10) *style:* **Variable and function name style should be snake_case.**
```r
fit15.aov <- aov(V1 ~ V2 + V5, data = dat)
^~~~~~~~~
```
[inst/example/simple_script.R:13:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
tab.12 <- summary(fit12)
^~~~~~
```
[inst/example/simple_script.R:14:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
tab.13 <- summary(fit13)
^~~~~~
```
[inst/example/simple_script.R:15:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L15) *style:* **Variable and function name style should be snake_case.**
```r
tab.14 <- summary(fit14)
^~~~~~
```
[inst/example/simple_script.R:16:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/inst/example/simple_script.R#L16) *style:* **Variable and function name style should be snake_case.**
```r
tab.15 <- append(fit15.aov, tab.14)
^~~~~~
```
[tests/testthat/lib_test.R:13:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L13) *style:* **Variable and function name style should be snake_case.**
```r
fit15.aov <- aov(V1 ~ V2 + V5, data = dat)
^~~~~~~~~
```
[tests/testthat/lib_test.R:16:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L16) *style:* **Variable and function name style should be snake_case.**
```r
tab.12 <- summary(fit12)
^~~~~~
```
[tests/testthat/lib_test.R:17:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L17) *style:* **Variable and function name style should be snake_case.**
```r
tab.13 <- summary(fit13)
^~~~~~
```
[tests/testthat/lib_test.R:18:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L18) *style:* **Variable and function name style should be snake_case.**
```r
tab.14 <- summary(fit14)
^~~~~~
```
[tests/testthat/lib_test.R:19:1:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/lib_test.R#L19) *style:* **Variable and function name style should be snake_case.**
```r
tab.15 <- append(fit15.aov, tab.14)
^~~~~~
```
[tests/testthat/test-main.R:3:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L3) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:5:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L5) *style:* **Variable and function name style should be snake_case.**
```r
    clean.simple.out <- clean(simple.script, "out")
    ^~~~~~~~~~~~~~~~
```
[tests/testthat/test-main.R:14:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
    filepath.out <- get_libs(script)
    ^~~~~~~~~~~~
```
[tests/testthat/test-main.R:31:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:33:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L33) *style:* **Variable and function name style should be snake_case.**
```r
    format.simple.out <- clean(simple.script, "out", format = FALSE)
    ^~~~~~~~~~~~~~~~~
```
[tests/testthat/test-main.R:40:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L40) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- readScript(script)
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:42:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L42) *style:* **Variable and function name style should be snake_case.**
```r
    clean.multi <- clean(simple.script, vars, format = FALSE)
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:48:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L48) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:50:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L50) *style:* **Variable and function name style should be snake_case.**
```r
    novars.out <- capture.output(clean(simple.script))
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:55:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
    long.script <- system.file(
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:58:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x <- clean(long.script, "x")
    ^~~~~~~
```
[tests/testthat/test-main.R:59:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L59) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x2 <- clean(long.script, "x2")
    ^~~~~~~~
```
[tests/testthat/test-main.R:60:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L60) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x3 <- clean(long.script, "x3")
    ^~~~~~~~
```
[tests/testthat/test-main.R:61:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L61) *style:* **Variable and function name style should be snake_case.**
```r
    clean.x2x3 <- clean(long.script, c("x2", "x3"))
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:62:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L62) *style:* **Variable and function name style should be snake_case.**
```r
    clean.z <- clean(long.script, "z")
    ^~~~~~~
```
[tests/testthat/test-main.R:69:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L69) *style:* **Variable and function name style should be snake_case.**
```r
    env.long <- new.env()
    ^~~~~~~~
```
[tests/testthat/test-main.R:70:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L70) *style:* **Variable and function name style should be snake_case.**
```r
    env.x <- new.env()
    ^~~~~
```
[tests/testthat/test-main.R:71:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L71) *style:* **Variable and function name style should be snake_case.**
```r
    env.x2 <- new.env()
    ^~~~~~
```
[tests/testthat/test-main.R:72:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L72) *style:* **Variable and function name style should be snake_case.**
```r
    env.x3 <- new.env()
    ^~~~~~
```
[tests/testthat/test-main.R:73:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L73) *style:* **Variable and function name style should be snake_case.**
```r
    env.x2x3 <- new.env()
    ^~~~~~~~
```
[tests/testthat/test-main.R:74:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L74) *style:* **Variable and function name style should be snake_case.**
```r
    env.z <- new.env()
    ^~~~~
```
[tests/testthat/test-main.R:102:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L102) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:105:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L105) *style:* **Variable and function name style should be snake_case.**
```r
    var.files <- paste0(vars, "_clean.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:106:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L106) *style:* **Variable and function name style should be snake_case.**
```r
    var.vars <- list()
    ^~~~~~~~
```
[tests/testthat/test-main.R:108:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L108) *style:* **Variable and function name style should be snake_case.**
```r
        var.clean <- clean(simple.script, vars[i])
        ^~~~~~~~~
```
[tests/testthat/test-main.R:110:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L110) *style:* **Variable and function name style should be snake_case.**
```r
        var.env <- new.env()
        ^~~~~~~
```
[tests/testthat/test-main.R:115:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L115) *style:* **Variable and function name style should be snake_case.**
```r
    var.check <- logical()
    ^~~~~~~~~
```
[tests/testthat/test-main.R:127:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L127) *style:* **Variable and function name style should be snake_case.**
```r
    long.script <- system.file(
    ^~~~~~~~~~~
```
[tests/testthat/test-main.R:130:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L130) *style:* **Variable and function name style should be snake_case.**
```r
    var.files <- paste0(vars, "_clean.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:131:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L131) *style:* **Variable and function name style should be snake_case.**
```r
    var.vars <- list()
    ^~~~~~~~
```
[tests/testthat/test-main.R:133:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L133) *style:* **Variable and function name style should be snake_case.**
```r
        var.clean <- clean(long.script, vars[i])
        ^~~~~~~~~
```
[tests/testthat/test-main.R:135:9:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L135) *style:* **Variable and function name style should be snake_case.**
```r
        var.env <- new.env()
        ^~~~~~~
```
[tests/testthat/test-main.R:140:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L140) *style:* **Variable and function name style should be snake_case.**
```r
    var.check <- logical()
    ^~~~~~~~~
```
[tests/testthat/test-main.R:154:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L154) *style:* **Variable and function name style should be snake_case.**
```r
    glist.out <- Rclean:::get_path(vl, "out")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:162:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L162) *style:* **Variable and function name style should be snake_case.**
```r
    noid.out <- testthat:::capture_output({Rclean:::get_path(vl)},
    ^~~~~~~~
```
[tests/testthat/test-main.R:170:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L170) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:172:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L172) *style:* **Variable and function name style should be snake_case.**
```r
    output.cap <- capture.output(
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:180:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L180) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:182:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L182) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- readScript(simple.script)
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:183:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L183) *style:* **Variable and function name style should be snake_case.**
```r
    output.cap <- capture.output(
    ^~~~~~~~~~
```
[tests/testthat/test-main.R:190:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L190) *style:* **Variable and function name style should be snake_case.**
```r
    simple.script <- system.file(
    ^~~~~~~~~~~~~
```
[tests/testthat/test-main.R:201:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L201) *style:* **Variable and function name style should be snake_case.**
```r
    keep.test <- readLines("clean.simple.test.R")
    ^~~~~~~~~
```
[tests/testthat/test-main.R:212:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L212) *style:* **Variable and function name style should be snake_case.**
```r
    vars.test <- get_vars(script)
    ^~~~~~~~~
```
[tests/testthat/test-main.R:223:5:](https://github.com/MKLau/Rclean/blob/9ccab19a4dd06ede97e75b4a336daebf5611e77c/tests/testthat/test-main.R#L223) *style:* **Variable and function name style should be snake_case.**
```r
    vars.test <- get_vars(script)
    ^~~~~~~~~
```


Hi


## Lipsum Really?

So we __really__ were not able to find better filler text?


Successfully deployed to following URLs:

* https://nextwechat-mwt3e3d3n.now.sh
* https://nextwechat.rifanyy.now.sh
* https://nextwechat-git-master.rifanyy.now.sh


Successfully deployed to following URLs:

* https://f1-gpf9kwpbu.now.sh
* https://f1-orpin-alpha.now.sh
* https://dev.f1calendar.com
* https://f1.ay8s.now.sh
* https://f1-git-master.ay8s.now.sh


[R/ABC_SMC.R:11:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/nLTTDiff.R:59:27:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


Deployment failed with the following error:

~~~
The value of the `version` property within now.json can only be `1` or `2`.
~~~


Please add an appropriate copyright header, e.g.:

/*******************************************************************************
 * Copyright (c) 2020 SWTChart project.
 *
 * This program and the accompanying materials are made
 * available under the terms of the Eclipse Public License 2.0
 * which is available at https://www.eclipse.org/legal/epl-2.0/
 *
 * SPDX-License-Identifier: EPL-2.0
 *
 * Contributors:
 * Frank Buloup - initial API and implementation
 *******************************************************************************/


Hello


Successfully deployed to following URLs:

* https://sample-ljf4v7to2.now.sh
* https://sample-alpha-nine.now.sh
* https://sample.masanari.now.sh
* https://sample-git-master.masanari.now.sh


> @apgsga-jhe Hmmm, this actually should go away ;-)

@chhex : yep agreed :)


super travail olivier


I tested it and in general it works. But flickering and artifacts in case of SPIFFS access is till there, of course.


Successfully deployed to following URLs:

* https://landing-ftasjbzc0.now.sh
* https://landing-vert-beta.now.sh
* https://landing.truck-rideshare.now.sh
* https://landing-git-master.truck-rideshare.now.sh


good..


Successfully deployed to following URLs:

* https://authentication-microservice-m7yb3y7ar.now.sh
* https://authentication-microservice.dimitamp.now.sh
* https://authentication-microservice-git-master.dimitamp.now.sh


LGTM. The complexity is `O(n^2)` though. I will submit a PR based on using `set` to improve it to `O(n)`.


Successfully deployed to following URLs:

* https://scvoetgithubio-fwnfr8t5g.now.sh
* https://scvoet.me
* https://scvoet.now.sh
* https://blog.scvoet.me
* https://www.scvoet.me
* https://scvoetgithubio.scvoet.now.sh
* https://scvoetgithubio-git-master.scvoet.now.sh


Successfully deployed to following URLs:

* https://sample-en5f2f0gw.now.sh
* https://sample-alpha-nine.now.sh
* https://sample.masanari.now.sh
* https://sample-git-master.masanari.now.sh


1. It does not get all folders. It gets the first 100 folders from google drive, and returns a `nextPageToken` to get the text 100 folders:

<img width="848" alt="all-folders" src="https://user-images.githubusercontent.com/6686679/72088686-59ab1180-3313-11ea-950b-d3a511b0cc28.png">

2. It gets folders from all google drive, not only subfolders of NeuralNotes.
    In NeuralNotes we don't need any user's folders except the ones inside of the "NeuralNotes/" folder.


Successfully deployed to following URLs:

* https://mddoks-3eaqsfncd.now.sh
* https://mddoks.now.sh
* https://mddoks.mauroreisvieira.now.sh
* https://mddoks-git-master.mauroreisvieira.now.sh


"homepage": "https://vivek-351code.github.io/Startup-Funding-News/",


I don't know if this commit message is correct...
このコミットメッセージが正しい英文かわかりません…

Original text (Japanese)/原文(日本語): `/colortool/内のhidtestをcolortoolに名称変更`


We can skip this if condition check as well. Just the else part would be sufficient for us.


Successfully deployed to following URLs:

* https://mak-r9nkb9yu1.now.sh
* https://mak-umber-two.now.sh
* https://mak.nursultansharsheev.now.sh
* https://mak-git-master.nursultansharsheev.now.sh


hello


TeamCity Bvcms / Build [Build 3367](https://builds.tpsdb.com/viewLog.html?buildId=11184&buildTypeId=Bvcms_Build) outcome was **SUCCESS**
Summary: Tests passed: 211 Build time: 00:24:56


TeamCity Bvcms / Build [Build 3369](https://builds.tpsdb.com/viewLog.html?buildId=11186&buildTypeId=Bvcms_Build) is now running


"the the" - should be "then the"


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-93-cgsiweb.pantheonsite.io/)

Created multidev environment [pr-93](https://dashboard.pantheon.io/sites/806fd996-4d92-45f6-a74e-dc88955a747a#pr-93) for cgsiweb.


It is `file`, not `files`. It is an element of an array, not the whole array.


Failed to assign a domain to your deployment due to the following error:

~~~
The domain epineda.dev is not verfied and cannot be used as an alias.
~~~

([Learn more](https://zeit.co/sepineda/epinedadev/4f9t4gwrq) or [visit](https://epinedadev-4f9t4gwrq.now.sh) the non-aliased deployment)


The value of `req.user` is set by the second argument of the `done()` callback in this line: `return done(null, {...profile, groups})`. The `done()` callback returns `undefined`, hence the error you see. Try something like this:

```js
// All users are ok, as we control the entire user pool.
const user = {...profile, groups};

user.visibleSources =
  Array.from(sources.values())
    .filter(source => source.visibleToUser(user))
    .map(source => source._name);

return done(null, user);
```


Successfully deployed to following URLs:

* https://mywebsite-ax120uhxe.now.sh
* https://mywebsite-murex-five.now.sh
* https://mywebsite.ja3180.now.sh
* https://mywebsite-git-master.ja3180.now.sh


Successfully deployed to following URLs:

* https://mayra-kwo6bxi5b.now.sh
* https://mayra.now.sh
* https://mayra.dyst.now.sh
* https://mayra-git-master.dyst.now.sh


[R/ABC_SMC.R:11:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/nLTTDiff.R:59:27:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/thijsjanzen/nLTT/blob/585ee97233acf2bf64c9218bc1079346850558dc/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```


Successfully deployed to following URLs:

* https://theprojectalpha-imgjr02nz.now.sh
* https://project-alpha.now.sh
* https://theprojectalpha.now.sh
* https://theprojectalpha.hugos29dev.now.sh
* https://theprojectalpha-git-master.hugos29dev.now.sh


Successfully deployed to following URLs:

* https://pkgr-20srcbwfm.now.sh
* https://pkgr.now.sh
* https://pkgr.rxts.now.sh
* https://pkgr-git-master.rxts.now.sh


Commit line type - Question 5-> Question 4


Successfully deployed to following URLs:

* https://tree-edzbdwuzl.now.sh
* https://tree-chi-lake.now.sh
* https://tree.react-component.now.sh
* https://tree-git-master.react-component.now.sh


what's the value of @user here?, didn't defined before using I guess.


Successfully deployed to following URLs:

* https://parkenconsultingcom-3t0vd6yo0.now.sh
* https://www.parkenconsulting.com
* https://parkenconsultingcom.parkenconsulting.now.sh
* https://parkenconsultingcom-git-master.parkenconsulting.now.sh


Successfully deployed to following URLs:

* https://lizwiki-4oquxyfp4.now.sh
* https://liz.wiki
* https://lizwiki.lizhengnacl.now.sh
* https://lizwiki-git-master.lizhengnacl.now.sh


both ${VG} *and* ${LV} must exist to reach here, so i think it is fine.

However, if both must exist and doesn't matter which ${LV} is active. Why bother the given ${LV} to check?
I think you can always check the ${VG} is attached via `dmsetup ...` then pick up the 1st LV to read 1 byte. In this case, you don't need the two `if else` any more.


Successfully deployed to following URLs:

* https://grant-dho71sfj0.now.sh
* https://grant.executebig.org
* https://grant.executebig.now.sh
* https://grant-git-master.executebig.now.sh


Successfully deployed to following URLs:

* https://theprojectalpha-eixmmb5bc.now.sh
* https://project-alpha.now.sh
* https://theprojectalpha.now.sh
* https://theprojectalpha.hugos29dev.now.sh
* https://theprojectalpha-git-master.hugos29dev.now.sh


Successfully deployed to following URLs:

* https://parkenconsultingcom-5k0nasnt9.now.sh
* https://www.parkenconsulting.com
* https://parkenconsultingcom.parkenconsulting.now.sh
* https://parkenconsultingcom-git-master.parkenconsulting.now.sh


either fix the typo for Project resource or always remember to use **Projectt** in place of **Project**


Thanks with  Appreciate


Successfully deployed to following URLs:

* https://grant-pe7zyn35p.now.sh
* https://grant.executebig.org
* https://grant.executebig.now.sh
* https://grant-git-master.executebig.now.sh


Successfully deployed to following URLs:

* https://xr-graph-eqc71ge3w.now.sh
* https://xr-graph.now.sh
* https://xr-graph.marlon360.now.sh
* https://xr-graph-git-master.marlon360.now.sh


bkkhćjhldrc


Btw, this only makes sense to do for the UTF-8 case (no the UTF-16 case).

So, I would comment it out like the `// Or ReadAllBytes if the file encoding is UTF-8:` section, OR, flip it so that the UTF-16 one is commented out, but this isn't.


TeamCity Bvcms / Build [Build 3355](https://builds.tpsdb.com/viewLog.html?buildId=11159&buildTypeId=Bvcms_Build) outcome was **FAILURE**
Summary: Tests failed: 1 (1 new), passed: 210 Build time: 00:24:21
### Failed tests
```
Webapp collection (1): IntegrationTests.Areas.Search.Views.Query.EditConditionTests.FundIds_Should_Appear_In_TopGiver_Search_Condition: OpenQA.Selenium.WebDriverTimeoutException : Timed out after 10 seconds
   at OpenQA.Selenium.Support.UI.DefaultWait`1.ThrowTimeoutException(String exceptionMessage, Exception lastException)
   at OpenQA.Selenium.Support.UI.DefaultWait`1.Until[TResult](Func`2 condition)
   at IntegrationTests.Support.FeatureTestBase.WaitForElement(String css, Int32 maxWaitTimeInSeconds, Boolean visible) in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Support\FeatureTestBase.cs:line 573
   at IntegrationTests.Areas.Search.Views.Query.EditConditionTests.FundIds_Should_Appear_In_TopGiver_Search_Condition() in C:\TeamCity\buildAgent\work\de2c4e6ef697cb99\IntegrationTests\Areas\Search\Views\Query\EditConditionTests.cs:line 22

```


TeamCity Bvcms / Build [Build 3357](https://builds.tpsdb.com/viewLog.html?buildId=11161&buildTypeId=Bvcms_Build) is now running


I think it's an issue I've run up against before that I've been meaning to look into, thanks for doing it!


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-53-gregory-industries.pantheonsite.io/)

Created multidev environment [pr-53](https://dashboard.pantheon.io/sites/6a63ef8e-11f2-468f-86b6-5973ebf0ffbd#pr-53) for gregory-industries.


TeamCity Bvcms / Build [Build 3358](https://builds.tpsdb.com/viewLog.html?buildId=11164&buildTypeId=Bvcms_Build) is now running


TeamCity Bvcms / Build [Build 3356](https://builds.tpsdb.com/viewLog.html?buildId=11160&buildTypeId=Bvcms_Build) outcome was **SUCCESS**
Summary: Tests passed: 211 Build time: 00:25:13


Failed to assign a domain to your deployment due to the following error:

~~~
You are not owner of the domain "atlasengine.dev".
~~~

([Learn more](https://zeit.co/peaceiris/test-nurodev-atlas/qsskxq2s1) or [visit](https://test-nurodev-atlas-qsskxq2s1.now.sh) the non-aliased deployment)


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


Successfully deployed to following URLs:

* https://ccc-7zt6qj08h.now.sh
* https://ccc.zeit-github-test-dev1.now.sh
* https://ccc-git-master.zeit-github-test-dev1.now.sh


Successfully deployed to following URLs:

* https://github-e2e-tests-dev-alias-v2-without-alias-cd2d1oztd.now.sh
* https://github-e2e-tests-dev-alias-v2-without-alias.zeit-github-test-dev1.now.sh
* https://github-e2e-tests-dev-alias-v2-without-alias-git-master.zeit-github-test-dev1.now.sh


Does it have consumers?


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Failed to assign a domain to your deployment due to the following error:

~~~
The domain now.pl is not verfied and cannot be used as an alias.
~~~

([Learn more](https://zeit.co/akiramoo7/portfolio/lygvcrznu) or [visit](https://portfolio-lygvcrznu.now.sh) the non-aliased deployment)


Thank you so much!

Now, I get the following error regarding the libyade:

# set usePolyhedra=True if poly option is set
# use profiler or not
python -m cProfile -o /tmp/surf1.pro surf1.py
Traceback (most recent call last):
  File "/usr/lib/python2.7/runpy.py", line 174, in _run_module_as_main
    "__main__", fname, loader, pkg_name)
  File "/usr/lib/python2.7/runpy.py", line 72, in _run_code
    exec code in run_globals
  File "/usr/lib/python2.7/cProfile.py", line 200, in <module>
    main()
  File "/usr/lib/python2.7/cProfile.py", line 193, in main
    runctx(code, globs, None, options.outfile, options.sort)
  File "/usr/lib/python2.7/cProfile.py", line 49, in runctx
    prof = prof.runctx(statement, globals, locals)
  File "/usr/lib/python2.7/cProfile.py", line 140, in runctx
    exec cmd in globals, locals
  File "surf1.py", line 9, in <module>
    import libyade
ImportError: dynamic module does not define init function (initlibyade)
makefile:41: recipe for target 'example' failed
make: *** [example] Error 1


Successfully deployed to following URLs:

* https://nextf1-ro8g3ygcj.now.sh
* https://nextf1.now.sh
* https://nextf1.com
* https://nextf1.havgry.now.sh
* https://nextf1-git-master.havgry.now.sh


Successfully deployed to following URLs:

* https://med-cabinet-jze2923yj.now.sh
* https://med-cabinet.now.sh
* https://med-cabinet.anthonylopez.now.sh
* https://med-cabinet-git-master.anthonylopez.now.sh


Successfully deployed to following URLs:

* https://sdv-3p3iwvmp9.now.sh
* https://sdv-iota-one.now.sh
* https://sdv.msroed.now.sh
* https://sdv-git-master.msroed.now.sh


@tpetazzoni Using hard links is a good idea, but it also lets you shoot yourself in the foot a little bit.

Take this example
PackageA builds and installs FileA to staging
PackageB builds and modifies FileA is such a way that FileA doesn't work anymore

Since it is a hardlink, FileA is now broken for all packages depending on PackageA and you would need to rebuild both PackageA to get a working copy again, even though PackageB was the one that corrupted the file.

Not sure if you can come up with another way that would enforce a new file created if the file is modified. Using `sed -i 'expr' FileA` is fine, but using `echo "something" >> FileA` will modify all versions.

I've thought of using unionfs, but that would probably add a lot more complication than its worth and you would have tons of mounts you would then need to manage. I've also tried inotify, but it didn't seem reliable and is also a bit complicated to manage.

I just thought I would bring this to your attention in case you weren't already aware of it.


Successfully deployed to following URLs:

* https://shareimage-46jz52tdn.now.sh
* https://shareimage.now.sh
* https://shareimage.jnovaxer.now.sh
* https://shareimage-git-master.jnovaxer.now.sh


Successfully deployed to following URLs:

* https://chartcomposer-qgp3fau79.now.sh
* https://songdocs.io
* https://chartcomposer.songdocs.now.sh
* https://chartcomposer-git-master.songdocs.now.sh


Successfully deployed to following URLs:

* https://personal-website-ewizqwxmm.now.sh
* https://personal-website-eight-plum.now.sh
* https://gabriellaroche.dev
* https://personal-website.glarochedev.now.sh
* https://personal-website-git-master.glarochedev.now.sh


Successfully deployed to following URLs:

* https://vanillafunctions-kifwzyfkz.now.sh
* https://hukamnama.amandeep.tech
* https://khalsa.tech
* https://www.khalsa.tech
* https://hukamnama.khalsa.tech
* https://vanillafunctions.khalsa.now.sh
* https://vanillafunctions-git-master.khalsa.now.sh


exit


Successfully deployed to following URLs:

* https://gatsby-theme-carbon-iqjyfxhm6.now.sh
* https://gatsby-theme-carbon.now.sh
* https://gatsby-theme-carbon.carbon-design-system.now.sh
* https://gatsby-theme-carbon-git-master.carbon-design-system.now.sh


Copy of this build can be found at
https://www.mewbuilds.com/build/a5d19ea582407c49e4143307c9eba23af054c558/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmVuvGzjnKMiYjS2gfKNGHrhHvo3fBeRvpWTFXHWhiFL57
                       Virus Total analysis
                       https://www.virustotal.com/file/5a7d48729768c8d8277a403a588706f986a45d3741265af3990201a9c440d7cd/analysis/1578529884/


@tjjh89017 @BPI-SINOVOIP @Dangku This fixes the buffer deallocation issue.

[patch.txt](https://github.com/BPI-SINOVOIP/BPI-W2-bsp/files/4037983/patch.txt)


![amelia-k20 pro](https://user-images.githubusercontent.com/58150791/72027564-e8dc0900-32c2-11ea-926b-dd0c33489902.jpg)


Hi @Sniki, it means that viewer developers (like HWSensors) need to implement reading sensor values from I/O Registry and display them in human-readable format (potentially building some kind of profiles). Value interpretation is partially covered [here](https://applelife.ru/posts/854847) but in brief it is all about reading [datasheets](https://applelife.ru/threads/datasheets-k-chipam-superio.2944734/).


@BinaryMoon Newer PHPStan support array shapes.

```php
@return array{html: string, last: bool}
```


PyCharm не видел этот файл, поэтому загрузила его вручную


@schlessera Can we revert this? https://github.com/wp-cli/wp-cli/releases/tag/v2.4.0 was released.


Successfully deployed to following URLs:

* https://front-end-bzom1wg7m.now.sh
* https://front-end-kappa-nine.now.sh
* https://front-end.smcguire1826.now.sh
* https://front-end-git-master.smcguire1826.now.sh


Successfully deployed to following URLs:

* https://dotcom-68zy4ihma.now.sh
* https://smokeyfro.com
* https://dotcom.smokeyfro.now.sh
* https://dotcom-git-master.smokeyfro.now.sh


it's of course unfinished and I've done only 4 section's


Does this still work?


TeamCity MAS / MAS [Build 1.0.1.441-MAS-179-CMS-nuspec](https://teamcity.nice.org.uk/viewLog.html?buildId=64081&buildTypeId=Mas_Mas) outcome was **SUCCESS**
Summary: Running Build time: 00:08:00


Successfully deployed to following URLs:

* https://surname-site-a73lxu5ac.now.sh
* https://stickajones.org
* https://surname-site.keplersj.now.sh
* https://surname-site-git-master.keplersj.now.sh


TeamCity MAS / MAS WIP [Build 1.0.0.452-MAS-179-CMS-nuspec](https://teamcity.nice.org.uk/viewLog.html?buildId=64087&buildTypeId=Mas_MasWip) outcome was **SUCCESS**
Summary: Tests passed: 5 Build time: 00:01:20


Closes https://github.com/BioKIC/NEON-Biorepository-Data-Docs/issues/38