Failed to assign a domain to your deployment due to the following error:

~~~
The domain sourceco.de.com is not verfied and cannot be used as an alias.
~~~

([Learn more](https://zeit.co/martinriosixto/sourcecode/rjy4bexv9) or [visit](https://sourcecode-rjy4bexv9.now.sh) the non-aliased deployment)


The exit status of a pipeline is the status of the last process in the pipeline.  In this case, that is `tee`, so it will always print '0'.

```
$ false | tee; echo $?
0
```

How about something like this?
```
(/var/lib/cloud/user-data.sh 2>&1 ; echo "User Data Script Exit Status: $?") | tee /var/log/cloud-bootstrap.log
```
This has the added advantage of recording the user-data script exit status in the log file.


The 1ms silences behavior is still unclear. There is a (now) known bug in the rtttl-player, https://github.com/adamonsoon/rtttl-parse/issues/1, which caused the music to be played at the incorrect speed on the web, but the correct speed on the swadge. The adjusted times in this PR are what they were supposed to be to begin with.


Remove logging?


Successfully deployed to following URLs:

* https://mostly-indie-ipyygxd70.now.sh
* https://mostlyindie.wunnle.dev
* https://mostlyindie.com
* https://www.mostlyindie.com
* https://mostly-indie.wunnle.now.sh
* https://mostly-indie-git-master.wunnle.now.sh


Successfully deployed to following URLs:

* https://dreamlog-97r2ubp49.now.sh
* https://dreamlog.now.sh
* https://dreamlog.pashatay.now.sh
* https://dreamlog-git-master.pashatay.now.sh


Successfully deployed to following URLs:

* https://design-system-checklist-dbvbnfopk.now.sh
* https://designsystemchecklist.com
* https://design-system-checklist.ardakaracizmeli.now.sh
* https://design-system-checklist-git-master.ardakaracizmeli.now.sh


develop (mjwitte) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Successfully deployed to following URLs:

* https://national-parks-jm5imbjcm.now.sh
* https://national-parks.now.sh
* https://national-parks.jsnkng.now.sh
* https://national-parks-git-master.jsnkng.now.sh


develop (mjwitte) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (11 of 11 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


不能发布场景


Successfully deployed to following URLs:

* https://ssrsubscriber-i4ik22d4u.now.sh
* https://ssrsubscriber.youlingcao.now.sh
* https://ssrsubscriber-git-master.youlingcao.now.sh


re


qwe


Successfully deployed to following URLs:

* https://site-qkrn53xoa.now.sh
* https://site.staart.now.sh
* https://site-git-master.staart.now.sh


removed extraneous inspect test code


Thanks for the info. Taking a look.


Ah, sorry, since it's always the scrollable versions that give trouble, I totally forgot about the lite one!
It should be fixed now! The installer will keep the same version number, but has been updated.


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-412-lfasiallcci.pantheonsite.io/)

Created multidev environment [pr-412](https://dashboard.pantheon.io/sites/d9d89786-a031-4501-a11a-542662f8f8c1#pr-412) for lfasiallcci.


Failed to assign a domain to your deployment due to the following error:

~~~
The domain byronwade.com couldn't be found.
~~~

([Learn more](https://zeit.co/bcw1995/byronwadecom/6nf32f119) or [visit](https://byronwadecom-6nf32f119.now.sh) the non-aliased deployment)


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-412-lfeventsci.pantheonsite.io/)

Created multidev environment [pr-412](https://dashboard.pantheon.io/sites/f74d847c-e689-4631-a91b-24b7f897139b#pr-412) for lfeventsci.


[SamSaffron posted](https://review.discourse.org/t/dev-remove-redundant-admin-login-route-share-with-email-login/8245/2):

I support this change, so much nicer.


[SamSaffron posted](https://review.discourse.org/t/dev-bump-shoulda-matchers-from-4-1-2-to-4-2-0-8689/8243/3):

I did not notice this upgraded i18n, should be fine.


How does this compare with a `@:constant var selection:TodoSelection` in TodoList?


webContents.excuteJavaScript里面反斜杠需要转义，
printToPDF不同版本用法不同


Successfully deployed to following URLs:

* https://bryangingechengithubio-p7u7mo0i7.now.sh
* https://bryangingechengithubio.bryangingechen.now.sh
* https://bryangingechengithubio-git-master.bryangingechen.now.sh


Successfully deployed to following URLs:

* https://my-store-admin-p6z33f4ok.now.sh
* https://my-store-admin.nexious.now.sh
* https://my-store-admin-git-master.nexious.now.sh


Successfully deployed to following URLs:

* https://componentry-dot-design-jrtkdtc1o.now.sh
* https://componentry.design
* https://componentry-dot-design.crystal-ball.now.sh
* https://componentry-dot-design-git-master.crystal-ball.now.sh


You are pushing commits at a very fast pace (across the whole organization).
Due to that, we cannot deploy the commit 771dee298edf7a94662093fb93e306ef6f1d708e.

You can try again later or [upgrade](https://zeit.co/account/plan) your plan.


@dereuromark it wasn't fully removed from master yet. https://github.com/cakephp/chronos/pull/241


Do we use Redis?


closes #10


Deleting Data from array on state.
1. Creating a function in the root component called deleteNinja with the parameter (id), so we can use the id to track and find which ninja(person) we want to remove.
2. Then we pass the function to <Ninjas /> component as that's where we want to delete it from, **so we prop called deleteNinja and set it equal to this.deleteNinja.**
3. We pass destructure the props in Ninjas.js file component, then add {deleteNinja} to the delete button. Then pass in the id of the individual ninja as the param (ninja.id). So for each ninja, this id will be different. Then place an arrow function around it so it doesn't get immediately called as it has a paranthesis.
4. Tested it with console on deleteNinja function, works. Now user filter method to cycle through array and return new array and filter certain items based on a condition in deleteNinja. Then in filter method, we pass a callback function to the individual ninja we're cycling through at that particular moment in time. Then return true or false, if true it's going to remain, if false going to take ninja we're cycling through and it's going to filter it out of the new array. We perform an evaluation to see if this id is equal to new id, with return statement.
5. Now we setState and inside we want to change the ninjas property and pass into it the new ninjas property we created.


remove_objexx_gio__2 (lefticus) - x86_64-Linux-Ubuntu-18.04-gcc-7.4: OK (2642 of 2642 tests passed, 1 test warnings)

Messages:\n
 * 1 test had: EIO diffs.

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


The following doc(s) have been deployed to the [5413adding](https:///5413adding-static-docs.pantheonsite.io/docs) Multidev environment:
- [/docs/assuming-write-access](https:///5413adding-static-docs.pantheonsite.io/docs/assuming-write-access)


fix to #20


FILTER METHOD


Successfully deployed to following URLs:

* https://commonlabsid-dknlioq3z.now.sh
* https://commonlabs.id
* https://commonlabsid.commonlabs-id.now.sh
* https://commonlabsid-git-master.commonlabs-id.now.sh


Issue7187 (dareumnam) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Blaziken was soon defeated by Charizard...


On Wed, 15 Jan 2020 02:34:35 -0800, Eelco Dolstra <notifications@github.com> wrote:
> To be clear, the `nixos-19.09` branch is identical to the channel. (We merged the `nixpkgs-channels` repo into `nixpkgs` a couple of months ago.) It gets updated from the `release-19.09` branch after all the tests have succeeded and all other builds have finished.
>
> Graham talked about the release process last week: https://www.youtube.com/watch?v=iRUBTBtxNu8

Oh! Thank you for the explanation, and sounds like I missed the merging
of nixpkgs-channels entirely so thank you for mentioning it.

Especially thanks for the video link (and thanks to all involved), I'm watching that now.

Sorry for the noise, appreciate the info.  Happy Nix'ing! :)

>
> --
> You are receiving this because you commented.
> Reply to this email directly or view it on GitHub:
> https://github.com/NixOS/nix/commit/30c9ca3b055a793339a850fc787fd5974e1405a8#commitcomment-36807354Non-text part: text/html


:label "Sakkunniggranskat"@sv .


Registration pull request updated: [JuliaRegistries/General/7970](https://github.com/JuliaRegistries/General/pull/7970)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.5.0 -m "<description of version>" 7b5bbe6da2ecb88682f893b3aab45c6f7b66bf6c
git push origin v0.5.0
```


? This breaks the game


:label "Övrigt vetenskapligt"@sv .


Successfully deployed to following URLs:

* https://phoenix-bot-pbhcp7wsc.now.sh
* https://phoenix-bot.now.sh
* https://phoenix-bot.sansometom.now.sh
* https://phoenix-bot-git-master.sansometom.now.sh


meant to close #closes #9047


:label "Övrigt (populärvetenskap, debatt)"@sv .


Thanks a lot for your contribution. It will be better if the comments in the file are done in English.


wtf, I didn't type it like that... O_o


That's a more direct fix but maybe the lambda would read better (because property syntax), .e.`.files.map { it.name }`?


Content for non-telepathic human.


The goal of this Commit was to remove the switch statements in the pose-class, but because of the required introduction of linear algebra and the corresponding switch to Numpy, the changes became more extensive than originally anticipated.
 Additionally, I removed the unused actions from the HLAction-enum.


pas gedit car on ne saitr pas ce que tu as ajouter
on la commande # ECHO


Thanks man


Successfully deployed to following URLs:

* https://puma-gatsby-520vad4q6.now.sh
* https://puma-gatsby-beta-five.now.sh
* https://puma-gatsby.superfast.live
* https://puma-gatsby.crystallize.now.sh
* https://puma-gatsby-git-master.crystallize.now.sh


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Successfully deployed to following URLs:

* https://blog-meomsiph9.now.sh
* https://blog.zircel.com
* https://blog.zircel.now.sh
* https://blog-git-master.zircel.now.sh


pas besoin de recursivité, je veuxt dire l'option r


DBにはUserのIconのパスに関する情報は持っていないのに、UserDAOクラスでパスを設定するというのは役割分担が変です。
User.IconId のsetterで設定されたIconIdを使ってIconPathを設定するときれいです。

IconPathFactoryクラスでパスを生成するという設計は非常にきれいでよいです。


把正确得用词改成错误的？


Successfully deployed to following URLs:

* https://parkenconsultingcom-jg24lz5g3.now.sh
* https://www.parkenconsulting.com
* https://parkenconsultingcom.parkenconsulting.now.sh
* https://parkenconsultingcom-git-master.parkenconsulting.now.sh


e.g. in Hardwicke & Ioannidis 2018 when they did a survey of RRs, as of 22nd Feb 2018 there were only 91 journals offering. This has gone to 221 in just under 2 years (steady, exponential rise year-on-year since 2013)


Successfully deployed to following URLs:

* https://commercetools-docs-kit-lok2mn5f5.now.sh
* https://commercetools-docs-kit.now.sh
* https://commercetools-docs-kit.commercetools.now.sh
* https://commercetools-docs-kit-git-master.commercetools.now.sh


p.s. some of these are just thoughts for extra evidence/elaboration to consider. Not necesarily saying they should be included


i had to add the --force flag to push this as there was a non fast forward add error even after the git pull . command.


@JuliaRegistrator register()


Deployment failed with the following error:

~~~
Could not find a secret by name "AUTH0_DOMAIN"
~~~


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-86-gregory-industries.pantheonsite.io/)

Created multidev environment [pr-86](https://dashboard.pantheon.io/sites/6a63ef8e-11f2-468f-86b6-5973ebf0ffbd#pr-86) for gregory-industries.


@efenderbosch
Thanks for your feedback.

I'll evaluate this.


lol, I forgot to remove that as I was committing. I saw that and was like "woops". I was going to do checks for urllib3 for the bad version but ended up abandoning it when the workaround came through to force it to work.  Haha glad you caught this one. I laughed it got committed.


Registration pull request created: [JuliaRegistries/General/7986](https://github.com/JuliaRegistries/General/pull/7986)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.6.6 -m "<description of version>" 993d852c8b098ee82bd7c52e1c0baa255615c16f
git push origin v0.6.6
```


@mitchute HeatPump:PlantLoop:EIR:Heating and similar below.


Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `scripts` property.
~~~


This should not be plural


Registration pull request created: [JuliaRegistries/General/7987](https://github.com/JuliaRegistries/General/pull/7987)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.6.7 -m "<description of version>" 19a921f37c40dd846aef62d3573da61f34f784ee
git push origin v0.6.7
```


If sidecars is empty, the loop can be skipped


Successfully deployed to following URLs:

* https://cfgwebsite-atwg2rzqm.now.sh
* https://cfgwebsite.now.sh
* https://cfgwebsite.remrobem.now.sh
* https://cfgwebsite-git-master.remrobem.now.sh


✌ Deployed to https://nathanheraldcom-github-update-font.myobie.now.sh
🥳🤓🎈⭐


Successfully deployed to following URLs:

* https://rccc-landing-9135d983b.now.sh
* https://rccc-landing-suspicious-tetra.now.sh
* https://rccc-landing.zhenhuacao.now.sh
* https://rccc-landing-git-master.zhenhuacao.now.sh


@marcelluethi I think this dash stops travis from working properly.


EIR_AWHP (mitchute) - x86_64-Linux-Ubuntu-18.04-cppcheck: OK (0 of 0 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png)


Successfully deployed to following URLs:

* https://gstcalculator-5qeil8x2w.now.sh
* https://gstcalculator.now.sh
* https://gstcalculator.hirokbanik.now.sh
* https://gstcalculator-git-master.hirokbanik.now.sh


Seeing as I made them myself I doubt it very much.


![Difference between blocks](https://raw.githubusercontent.com/bobdabuilderllc/yes/f5320dfb28335fd3c1fb01000a176d71e26c4cba/.makecode/blocksdiff.png)


Successfully deployed to following URLs:

* https://zpie-qhnendd2s.now.sh
* https://zpie.now.sh
* https://zpie.brucegne.now.sh
* https://zpie-git-master.brucegne.now.sh


Successfully deployed to following URLs:

* https://moltin-stripe-paymentintents-j8a4byp5y.now.sh
* https://moltin-stripe-paymentintents.now.sh
* https://moltin-stripe-paymentintents.moltin.now.sh
* https://moltin-stripe-paymentintents-git-master.moltin.now.sh


Deployment failed with the following error:

~~~
The function for index.php can't be handled by any builder. Make sure it is inside the api/ directory.
~~~


EIR_AWHP (mitchute) - x86_64-Linux-Ubuntu-18.04-custom_check: OK (11 of 11 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png)


Successfully deployed to following URLs:

* https://docspyvecorg-1qbw1m4mp.now.sh
* https://docspyvecorg.pyvec.now.sh
* https://docspyvecorg-git-master.pyvec.now.sh


/** @var string columns for SQL query
private $columns = '';


Successfully deployed to following URLs:

* https://rccc-landing-o0oeq1akc.now.sh
* https://rccc-landing-suspicious-tetra.now.sh
* https://rccc-landing.zhenhuacao.now.sh
* https://rccc-landing-git-master.zhenhuacao.now.sh


Deployment failed with the following error:

~~~
No source file matched the function for api/index.php.
~~~


Successfully deployed to following URLs:

* https://daim-go8nbqc0w.now.sh
* https://daim.now.sh
* https://daim.damienrobinson.now.sh
* https://daim-git-master.damienrobinson.now.sh


Thanks for picking this back up! :D

I use the same handle on the Gopher slack if you want testing in an application with multi-relationship models.


asdf


Successfully deployed to following URLs:

* https://react-hook-form-website-hw35vqfix.now.sh
* https://react-hook-form.com
* https://www.react-hook-form.com
* https://react-hook-form-website.bluebill1049.now.sh
* https://react-hook-form-website-git-master.bluebill1049.now.sh


TeamCity Bvcms / Build [Build 3394](https://builds.tpsdb.com/viewLog.html?buildId=11311&buildTypeId=Bvcms_Build) is now running


tests


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


Successfully deployed to following URLs:

* https://part-placer-12f5n2ooh.now.sh
* https://part-placer.now.sh
* https://part-placer.com
* https://www.part-placer.com
* https://part-placer.tyschroed.now.sh
* https://part-placer-git-master.tyschroed.now.sh


testsasdf


Successfully deployed to following URLs:

* https://jordansitkincom-qm6wki0gw.now.sh
* https://jordansitkin.com
* https://jordansitkincom.dustmason.now.sh
* https://jordansitkincom-git-master.dustmason.now.sh


Successfully deployed to following URLs:

* https://daim-8pouhcxk8.now.sh
* https://daim.now.sh
* https://daim.damienrobinson.now.sh
* https://daim-git-master.damienrobinson.now.sh


@bluetech
This fails since https://github.com/python/typeshed/commit/c44a556fb00f6225f1b4209e24dac9e54ae990aa, i.e. likely with the next mypy release:

> Name 'warnings._Record' is not defined


:point_right: click here to view a full list of the events :point_left:


Successfully deployed to following URLs:

* https://website-flgcy1o78.now.sh
* https://keplersj.com
* https://website.keplersj.now.sh
* https://website-git-master.keplersj.now.sh


    :x: Test Failed: va/tests/accessibility

composer va:test:accessibility

```
audited 183 packages in 1.173s
found 2 low severity vulnerabilities
  run `npm audit fix` to fix them, or `npm audit` for details

> axe_tests@1.0.0 test /var/aegir/projects/cms/pr823
> node ./tests/accessibility/aXeAccessibilityCheck.js

!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov 1
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/sections  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/page  = 1
[ { id: 'duplicate-id',
    impact: 'minor',
    tags: [ 'cat.parsing', 'wcag2a', 'wcag411' ],
    description: 'Ensures every id attribute value is unique',
    help: 'id attribute value must be unique',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/duplicate-id?application=webdriverjs',
    nodes: [ [Object], [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/landing_page  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/documentation_page  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/event  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/health_care_local_facility  = 1
[ { id: 'label',
    impact: 'critical',
    tags:
     [ 'cat.forms',
       'wcag2a',
       'wcag332',
       'wcag131',
       'section508',
       'section508.22.n' ],
    description: 'Ensures every form element has a label',
    help: 'Form elements must have labels',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/label?application=webdriverjs',
    nodes:
     [ [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object],
       [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/health_care_region_detail_page  = 1
[ { id: 'duplicate-id',
    impact: 'minor',
    tags: [ 'cat.parsing', 'wcag2a', 'wcag411' ],
    description: 'Ensures every id attribute value is unique',
    help: 'id attribute value must be unique',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/duplicate-id?application=webdriverjs',
    nodes: [ [Object], [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/health_care_region_page  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/office  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/outreach_asset  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/person_profile  = 1
[ { id: 'duplicate-id-aria',
    impact: 'critical',
    tags: [ 'cat.parsing', 'wcag2a', 'wcag411' ],
    description:
     'Ensures every id attribute value used in ARIA and in labels is unique',
    help: 'IDs used in ARIA and labels must be unique',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/duplicate-id-aria?application=webdriverjs',
    nodes: [ [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/press_release  = 1
[ { id: 'aria-allowed-attr',
    impact: 'critical',
    tags: [ 'cat.aria', 'wcag2a', 'wcag412' ],
    description: 'Ensures ARIA attributes are allowed for an element\'s role',
    help: 'Elements must only use allowed ARIA attributes',
    helpUrl:
     'https://dequeuniversity.com/rules/axe/3.3/aria-allowed-attr?application=webdriverjs',
    nodes: [ [Object] ] } ]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/regional_health_care_service_des  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/news_story  = 0
[]
!!!  NUMBER OF NEW VIOLATIONS on http://pr823.ci.cms.va.gov/node/add/support_service  = 0
[]
!!!  VIOLATION TYPES FOUND: 6 PROCESS EXITED WITH CODE 1  !!!
> npm install --only=production
> npm test
Tue, 14 Jan 2020 20:25:42 GMT axe-webdriverjs deprecated Error must be handled as the first argument of axe.analyze. See: #83 at tests/accessibility/aXeAccessibilityCheck.js:44:14
Tue, 14 Jan 2020 20:25:45 GMT axe-webdriverjs deprecated Error must be handled as the first argument of axe.analyze. See: #83 at tests/accessibility/aXeAccessibilityCheck.js:56:42
Failed to inject axe-core into one of the iframes!
Failed to inject axe-core into one of the iframes!
npm ERR! Test failed.  See above for more details.
Script npm test handling the va:test:accessibility event returned with error code 1
```

- **On:** devshop.cms.va.gov
- **In:** 01:13


The `work` and `target` folder should not be committed to git.
It is suggested to add these to a `.gitignore` file to prevent it.


Kernel crash happens due to error in the error handling while removal process is ongoing.
I'm wondering if below patch helps:

  --- a/drivers/spi/spi-pxa2xx-dma.c
  +++ b/drivers/spi/spi-pxa2xx-dma.c
  @@ -218,6 +218,7 @@ void pxa2xx_spi_dma_release(struct driver_data *drv_data)
   {
        struct spi_controller *controller = drv_data->controller;

  +       atomic_set(&drv_data->dma_running, 0);
        if (controller->dma_rx) {
                dmaengine_terminate_sync(controller->dma_rx);
                dma_release_channel(controller->dma_rx);


![](https://github.trello.services/images/mini-trello-icon.png) [Android TV app doesn't work with remote anymore, what happened?](https://trello.com/c/HMeJtCyZ/1377-android-tv-app-doesnt-work-with-remote-anymore-what-happened)


j'essaie de repartir a zero


tagging #440


Successfully deployed to following URLs:

* https://blog-dvauvd778.now.sh
* https://blog-one-zeta.now.sh
* https://tom.fm
* https://blog.zoo.now.sh
* https://blog-git-master.zoo.now.sh


### Lipsum Really?

So we __really__ were not able to find better filler text?


They got Yin, which suits them well!


Looks good.


why extra space


Successfully deployed to following URLs:

* https://portfolio-1vaqq9ye8.now.sh
* https://jeremycrump.work
* https://portfolio.jcrump88.now.sh
* https://portfolio-git-master.jcrump88.now.sh


raspberry pi pin 28
#define LED 0


How stable is this? Are we always guaranteed to get the correct company?

If we are using the API Token, then the company should be set automatically, so we should just be able to user user->company()


Successfully deployed to following URLs:

* https://national-parks-4z90ic11n.now.sh
* https://national-parks.now.sh
* https://national-parks.jsnkng.now.sh
* https://national-parks-git-master.jsnkng.now.sh


will this also validate blank strings as true?


Successfully deployed to following URLs:

* https://portfolio-32ihb5hyx.now.sh
* https://yuwen-li.com
* https://www.yuwen-li.com
* https://portfolio.muzlee1113.now.sh
* https://portfolio-git-master.muzlee1113.now.sh


Nice!


Oooh, I've never seen the format function before! That's super cool. How does it work?


nice


These comments are great!


##asdf


![Unterschied zwischen Blöcken](https://raw.githubusercontent.com/mkleinsb/pxt-calliope-test/eb74176ca5f2a6871b37a2d34eed92b797c42d5c/.github/makecode/blocksdiff.png)


Registration pull request created: [JuliaRegistries/General/7978](https://github.com/JuliaRegistries/General/pull/7978)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.3.0 -m "<description of version>" fecef26a50325bcb91da9a97e2d98c1cc826b0a2
git push origin v0.3.0
```


Successfully deployed to following URLs:

* https://sustainability-dzrvp92ub.now.sh
* https://sustainability.now.sh
* https://sustainability.tessgronski.now.sh
* https://sustainability-git-master.tessgronski.now.sh


Should it be 2020?


This commit has been deployed to DigitalOcean Spaces for easy reviewing.

| [kubernetes-tool](https://community-tools.sfo2.digitaloceanspaces.com/commits/kubernetes-tool/10477822e59b901f3c39c749aaa0d8b3ee493300/index.html) |
|---|


Successfully deployed to following URLs:

* https://haywire-3iyq8bj93.now.sh
* https://haywire.now.sh
* https://haywire.dagwoodsandwich56.now.sh
* https://haywire-git-master.dagwoodsandwich56.now.sh


Successfully deployed to following URLs:

* https://tegans-coffee-m4ng58a49.now.sh
* https://tegans-coffee.now.sh
* https://tegans-coffee.teganrauh.now.sh
* https://tegans-coffee-git-master.teganrauh.now.sh


TeamCity Identity and Access Management / Identity - ManagementPortal [Build 980-r83B5E90](https://teamcity.nice.org.uk/viewLog.html?buildId=64391&buildTypeId=IdentityandAccessManagement_BuildRoleManagementPortal) outcome was **SUCCESS**
Summary: Running Build time: 00:04:24


@zce after previously exploring other ways to handle this in Styled System, I think this is the best way for this particular case


typo alternative


[AppVeyor has built](https://ci.appveyor.com/project/cypress-io/cypress/builds/30134136/job/wu97akybfoyoeg58) the `win32 x64` version of the Test Runner.

You can install this pre-release platform-specific build using instructions at [https://on.cypress.io/installing-cypress#Install-pre-release-version](https://on.cypress.io/installing-cypress#Install-pre-release-version).

You will need to use custom `CYPRESS_INSTALL_BINARY` url and install Cypress using an url instead of the version.

    set CYPRESS_INSTALL_BINARY=https://cdn.cypress.io/beta/binary/3.8.3/win32-x64/appveyor-develop-63cb7224c7b099d828d441f6c14a8b5f7ac43a8e-30134136/cypress.zip
    npm install https://cdn.cypress.io/beta/binary/3.8.3/win32-x64/appveyor-develop-63cb7224c7b099d828d441f6c14a8b5f7ac43a8e-30134136/cypress.zip


mention that block has precedence over replacements, so it does not make sense to specify it when block is passed.


TeamCity MAS / MAS [Build 1.1.0.557-r893BC73](https://teamcity.nice.org.uk/viewLog.html?buildId=64393&buildTypeId=Mas_Mas) outcome was **SUCCESS**
Summary: Tests passed: 5 Build time: 00:01:12


Синхронизация однотипного перевода.


we can't break sites to gain more privacy. a general filter should be added so these captchas can be solved on all perimeterx sites. https://github.com/uBlockOrigin/uAssets/issues/6558#issuecomment-573459480


changes into origin


Successfully deployed to following URLs:

* https://ripe-components-vue-fivb8n2u2.now.sh
* https://ripe-components-vue.platforme.now.sh
* https://ripe-components-vue-git-master.platforme.now.sh


Successfully deployed to following URLs:

* https://retroflect-cra-mjyrhk2wn.now.sh
* https://retroflect-cra.now.sh
* https://retroflect.now.sh
* https://retroflect-cra.rahulshah7.now.sh
* https://retroflect-cra-git-master.rahulshah7.now.sh


@JuliaRegistrator `register()`


Deployment failed with the following error:

~~~
Your `package.json` file is missing a `build` property inside the `scripts` property.
~~~


Registration pull request created: [JuliaRegistries/General/7967](https://github.com/JuliaRegistries/General/pull/7967)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.2.2 -m "<description of version>" 330b525e8085c50396e668fefeb880349b84aa93
git push origin v0.2.2
```


TeamCity MAS / MAS [Build 1.1.0.553-MAS-185-Static-404](https://teamcity.nice.org.uk/viewLog.html?buildId=64378&buildTypeId=Mas_Mas) outcome was **SUCCESS**
Summary: Tests passed: 5 Build time: 00:02:40


Successfully deployed to following URLs:

* https://zenunu-kh9va0ivl.now.sh
* https://zenunu.now.sh
* https://zenunu.dtox-consulting.now.sh
* https://zenunu-git-master.dtox-consulting.now.sh


Successfully deployed to following URLs:

* https://web-guide-r5a7vlw6r.now.sh
* https://web-guide.now.sh
* https://web-guide.yurikarkhachev.now.sh
* https://web-guide-git-master.yurikarkhachev.now.sh


zdvzx


Would it make sense to change the PrepareCommand signature here to ensure the correct parameters are always passed? Something like having

```
PrepareCommand(
   IDbConnection conn,
   string sql,
   bool replaceTablePrefix = true)
```
Then the actual private implementation would check flag whether to do table prefix change, add parameter

This of course widens the scope and can be done separately


Successfully deployed to following URLs:

* https://reader-kfq415iil.now.sh
* https://reader.oacore.now.sh
* https://reader-git-master.oacore.now.sh


I didn't remove minutes, it's just not explicitly checked for. Technically any string would give you the same result as minutes.

You're right about `hours`, thanks! Wanna PR?


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


This change shows it's not backwards compatible.


Successfully deployed to following URLs:

* https://pollen-tracker-6vcf4rdrc.now.sh
* https://pollen-tracker.now.sh
* https://pollen-tracker.dblechoc.now.sh
* https://pollen-tracker-git-master.dblechoc.now.sh


wah sinau react pak


Successfully deployed to following URLs:

* https://frontend-3et77g485.now.sh
* https://frontend-jet-one.now.sh
* https://frontend.chefolio.now.sh
* https://frontend-git-master.chefolio.now.sh


Unfortunately, this is still missing some parentheses:

`{ ($.eventName = \"ConsoleLogin\") && ($.additionalEventData.MFAUsed != \"Yes\") }",`


Successfully deployed to following URLs:

* https://speedruns-ccferj5sv.now.sh
* https://speedruns.now.sh
* https://speedruns.speedrun.now.sh
* https://speedruns-git-master.speedrun.now.sh


Copy of this build can be found at
https://www.mewbuilds.com/build/48490b77f1bcc5dd9c3b371b9c754161cb71cb55/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmaWJExyDKi9b1eMy8bb9fexgrdn7dvEDMixTLXdM5qnzF
                       Virus Total analysis
                       https://www.virustotal.com/file/033d132960317d78d0220911aaea4ac97761449535c82e4b2afb459278be169b/analysis/1578966509/


add


dd


ddd


Hi Polverari!

Thanks a lot for the fix. I will release a new version now.

Cheers,

Eriberto


Yeah, it would be. The only thing is, it appears that the `verify` doesn't give a hoot about what the method call is.  I can change "TextInputClient.performAction" to "foo", and it still works.

So, I'm curious what the actual method calls are...


chillerElecEIRrefactor (mitchute) - x86_64-MacOS-10.13-clang: OK (2599 of 2599 tests passed, 0 test warnings)

![Build Badge](http://img.shields.io/badge/build%20status-warnings-yellow.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-100.0%25-green.png)


```suggestion
background-image: asset-url("music.jpg");
```


why not handle the generic rs1 and rd here as well?  otherwise lgtm.


Successfully deployed to following URLs:

* https://basis-4e49fnpnr.now.sh
* https://basis.now.sh
* https://basis.basis.now.sh
* https://basis-git-master.basis.now.sh


Executing the daily package evaluation, I will reply here when finished:

@nanosoldier `runtests(ALL, isdaily = true)`


Failed to assign a domain to your deployment due to the following error:

~~~
The domain dreamium.center couldn't be found.
~~~

([Learn more](https://zeit.co/zachkrall/dreamiumcenter/qklkrrogo) or [visit](https://dreamiumcenter-qklkrrogo.now.sh) the non-aliased deployment)


Successfully deployed to following URLs:

* https://at-watch-site-14c9ezqse.now.sh
* https://at-watch.jessicastokes.net
* https://at-watch-site.ticky.now.sh
* https://at-watch-site-git-develop.ticky.now.sh


This works but constantly opening and closing a file can be quite slow (imagine that you are writing a CSV with millions of rows). Rather prepare all the data and then save them at one.


Successfully deployed to following URLs:

* https://gatsby-theme-carbon-2ac9w38z0.now.sh
* https://gatsby-theme-carbon.now.sh
* https://gatsby-theme-carbon.carbon-design-system.now.sh
* https://gatsby-theme-carbon-git-master.carbon-design-system.now.sh


yes


Top-level functions should be surrounded by two blank lines https://pep8.org/#blank-lines


closes #4


Successfully deployed to following URLs:

* https://excalidraw-kjsgls4vj.now.sh
* https://excalidraw.now.sh
* https://excalidraw.vjeux.now.sh
* https://excalidraw-git-master.vjeux.now.sh


Deployment failed with the following error:

~~~
The property `builds` is not allowed in now.json when using Now 2.0 – please remove it.
~~~


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://ci-1102-cgsiweb.pantheonsite.io/)

Created multidev environment [ci-1102](https://dashboard.pantheon.io/sites/806fd996-4d92-45f6-a74e-dc88955a747a#ci-1102) for cgsiweb.


[BITM Web Design Batch-11 (Group-3).zip](https://github.com/skhasancse18344/laughing-octo-palm-tree/files/4066915/BITM.Web.Design.Batch-11.Group-3.zip)


Missing space after `,`


This means that the radio I'd now has to match the radio Mac, so either remove config.radio_identifier completely so we won't need to manually set the RUID in the configuration file every time we flash a new version, or keep using the radio identifier in the code. I think we should use the radio Mac but keep a member variable called RUID which we will set to the radio Mac at boot automatically and use it everywhere.
Then when we take a new device to a testbed we will update the RUID to the radio macs.

However, I sort of like the fact that prplmesh RUIDs are always 00:00:00:00:00:00 and 00:00:00:00:00:02 since it means that we don't need additional configuration for new testbed prplmesh agents, all will work with the default RUIDs.


@NoSuchUserException this will need to be repeated on Gallery, Details, and Origins


Copy of this build can be found at
https://www.mewbuilds.com/build/a1fe41730bf258e9213563b160e25051fe1d8323/index.html
                       https://www.cloudflare-ipfs.com/ipfs/QmdNSVFwaUsDgKibMoYyvAYA6643CFc2NNLeoGA59a3VsQ
                       Virus Total analysis
                       https://www.virustotal.com/file/dfa306020e920deeabafabc17ed1e031c03e5a68e655bd462f6e444517b2c458/analysis/1579040694/


Yeah, specifying `wreckrun` was breaking the tests for a little while.

Right now I get `flux wreckrun -n 1 -N 1 -c 1 echo "0.2236636671038722 0.8408240879550141" > flux_run.out`. What parts of this do you propose to include?


Deployment failed with the following error:

~~~
Could not find a secret by name "my-storyblok-api-key"
~~~


The premise is incorrect, since ST_TRIGGER is used also for things like clickable scenery (displaying in the format of overhead text or firing off a script). While this would be prevented via the searchmap, Entered gets called for ST_TRAVEL and ST_PROXIMITY only anyway.

The assert changes the previous behaviour of returning false to crashing, which is never nice, so I suggest you just log it instead.


TeamCity Bvcms / Build [Build 3401](https://builds.tpsdb.com/viewLog.html?buildId=11324&buildTypeId=Bvcms_Build) outcome was **SUCCESS**
Summary: Tests passed: 224 Build time: 00:25:40


[![Visit Site](https://raw.githubusercontent.com/pantheon-systems/terminus-build-tools-plugin/master/assets/images/visit-site-36.png)](https://pr-84-gregory-industries.pantheonsite.io/)

Created multidev environment [pr-84](https://dashboard.pantheon.io/sites/6a63ef8e-11f2-468f-86b6-5973ebf0ffbd#pr-84) for gregory-industries.


@JuliaRegistrator register branch=master


This note is specific to BizTalk Server 2016 only. Also, since NullAdapter isn't included with BizTalk, Sanjiv and I felt that it shouldn't be part of this doc


Registration pull request created: [JuliaRegistries/General/7923](https://github.com/JuliaRegistries/General/pull/7923)

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if [Julia TagBot](https://github.com/apps/julia-tagbot) is installed, or can be done manually through the github interface, or via:
```
git tag -a v0.34.10 -m "<description of version>" 167c0e2cdde750a32cc86885cb90fa0a480eb91f
git push origin v0.34.10
```


test


Códigos ainda estão incompletos


this should also be an h5


@JuliaRegistrator `register()`


Yes, That's right. Currently, it doesn't support generic seqs. Using a square boolean matrix with the dimension of the alphabet size is expensive for anything larger than char (consider integer). I mean the matrix in EqualityDefintion. That's why I ignored using this option of making two symbols equivalent. I didn't remove this class and its dependencies, maybe we can find a way to implement it for large alphabet size.


fdsfd


Successfully deployed to following URLs:

* https://tag-n81nne9ov.now.sh
* https://tag-ashy-iota.now.sh
* https://tag.andykay.now.sh
* https://tag-git-master.andykay.now.sh


I think the name "get_negation_metric" or similar would be more in line with other function names.

I do not find the naming "log_probs_n" intuitive. What is the difference to "log_probs" and can you specify this in the name? Same for "masked_indices" and "index_max_probs".


All pertaining to Unix systems, a prerequisite to UDS.  To avoid confusion I'll say file, but I always mean file name.  As such unlink() is used in place of remove, delete, destroy, ect.

It avoids race conditions.  For example if one tries to check if a file exists and then unlink it, the unlink could still fail with a file not found.  It's therefore best to unlink files and then deal(usually just ignore) with any file not found, as checking first is essentially a noop.

In this case, though, the goal is not to unlink the file...  and it's also unnecessary as a rename() will unlink any destination.  In this case if you try and unlink a file and then call bind(), the bind could still fail because the file exists!  Unlinking prior to bind should be treated as a noop, sadly it's not true and it looks like things work(when they shouldn't).

There doesn't seem to be a way to create a UDS on-top an existing file, though when working with open() it's important to manage things safely!  Ideal solutions will generate random names until one binds successfully(note umask should(and does) contain world write, for security... You undo this with set_permissions()).  Set ownership and then open up permissions(I did this backwards).  Then rename to the correct and/or final name.

Also: One of the big advantages of UDS is security, that you're not getting by setting the world bits.  I see how this maintains compatibility with TCP sockets, but it's not optimal.  Ideally there would be a group the server and clients have in common.  The server needs to be part of the group to be able to chown() to that group!

Thanks.


With respect to some upcoming changes, let make this symetrical (discuss with Sebas on upcoming changes)
virtual uint32_t Muted(const bool muted) = 0;
virtual uint32_t Muted(bool& muted) const = 0;
virtual uint32_t Volume(const uint8_t volume) = 0;
virtual uint32_t Volume(uint8_t& volume) const = 0;


[R/create_equal_alignment.R:10:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/create_equal_alignment.R#L10) *warning:* **no visible global function definition for ‘calc_dist’**
```r
  num_emp_subs <- sum(calc_dist(focal_alignment, root_sequence))
                      ^~~~~~~~~
```
[R/create_equal_alignment.R:14:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/create_equal_alignment.R#L14) *warning:* **no visible global function definition for ‘count_hidden’**
```r
  num_hidden_nodes <- count_hidden(input_tree)
                      ^~~~~~~~~~~~
```
[R/create_equal_alignment.R:28:24:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/create_equal_alignment.R#L28) *warning:* **no visible global function definition for ‘calc_dist’**
```r
  proposed_subs <- sum(calc_dist(proposed_alignment, root_sequence))
                       ^~~~~~~~~
```
[R/create_equal_alignment.R:39:9:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/create_equal_alignment.R#L39) *warning:* **no visible global function definition for ‘calc_dist’**
```r
    sum(calc_dist(local_alignment, root_sequence))
        ^~~~~~~~~
```
[R/estimate_marginal_models.R:7:25:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/estimate_marginal_models.R#L7) *style:* **Use <-, not =, for assignment.**
```r
  beast2_input_filename = beastier::create_temp_input_filename()
                        ^
```
[R/estimate_marginal_models.R:8:32:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/estimate_marginal_models.R#L8) *style:* **Use <-, not =, for assignment.**
```r
  beast2_output_state_filename = beastier::create_temp_state_filename()
                               ^
```
[R/infer_phylogeny.R:38:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/infer_phylogeny.R#L38) *style:* **Lines should not be more than 80 characters.**
```r
                                 treelog = beautier::create_treelog(filename = output_trees_filenames,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/infer_phylogeny.R:39:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/infer_phylogeny.R#L39) *style:* **Lines should not be more than 80 characters.**
```r
                                                                    log_every = 5000),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/infer_phylogeny.R:40:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/infer_phylogeny.R#L40) *style:* **Lines should not be more than 80 characters.**
```r
                                 tracelog = beautier::create_tracelog(filename = output_log_filename,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/infer_phylogeny.R:41:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/infer_phylogeny.R#L41) *style:* **Lines should not be more than 80 characters.**
```r
                                                                      log_every = 5000)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_dual_independent.R:14:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_independent.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
sim_dual_independent <- function(phy,
^
```
[R/sim_dual_independent.R:60:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_independent.R#L60) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
    P <- get_p_matrix(node_time, eig_q2, rate2)  # nolint
         ^~~~~~~~~~~~
```
[R/sim_dual_independent.R:99:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_independent.R#L99) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/sim_dual_linked.R:86:12:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_linked.R#L86) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
      P <- get_p_matrix(branch_length, eig_q, rate)   # nolint
           ^~~~~~~~~~~~
```
[R/sim_dual_linked.R:113:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_linked.R#L113) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/sim_dual_linked.R:119:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_linked.R#L119) *style:* **functions should have cyclomatic complexity of less than 15, this has 18.**
```r
sim_dual_linked <- function(phy,
^
```
[R/sim_dual_parent.R:55:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_parent.R#L55) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
    P <- get_p_matrix(node_time, eig_q2, rate2)  # nolint
         ^~~~~~~~~~~~
```
[R/sim_dual_parent.R:76:22:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_parent.R#L76) *warning:* **no visible global function definition for ‘get_index’**
```r
      local_index <- get_index(edge, parent, offspring)
                     ^~~~~~~~~
```
[R/sim_dual_parent.R:79:12:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_parent.R#L79) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
      P <- get_p_matrix(branch_length, eig_q1, rate1)  # nolint
           ^~~~~~~~~~~~
```
[R/sim_dual_parent.R:102:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_dual_parent.R#L102) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/sim_linked.R:51:29:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_linked.R#L51) *warning:* **no visible global function definition for ‘make_transition_matrix’**
```r
  node_transition_matrix <- make_transition_matrix(node_mut_rate_double)
                            ^~~~~~~~~~~~~~~~~~~~~~
```
[R/sim_linked.R:77:12:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_linked.R#L77) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
      P <- get_p_matrix(branch_length, eig_q, rate)  # nolint
           ^~~~~~~~~~~~
```
[R/sim_linked.R:100:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_linked.R#L100) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/sim_normal.R:41:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_normal.R#L41) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
    P <- get_p_matrix(tl[i], eig, rate)  # nolint
         ^~~~~~~~~~~~
```
[R/sim_normal.R:59:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_normal.R#L59) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/sim_unlinked_tree.R:43:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L43) *warning:* **no visible global function definition for ‘calc_dist’**
```r
  num_emp_subs <- sum(calc_dist(focal_alignment, rootseq))
                      ^~~~~~~~~
```
[R/sim_unlinked_tree.R:59:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L59) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
  P_n <- get_p_matrix(node_time, eig_q2, rate2)   # nolint
         ^~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:79:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L79) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
sim_unlinked_tree <- function(phy,
^
```
[R/sim_unlinked_tree.R:95:9:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L95) *warning:* **no visible global function definition for ‘calc_dist’**
```r
    sum(calc_dist(local_alignment, rootseq))
        ^~~~~~~~~
```
[R/sim_unlinked_tree.R:108:14:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L108) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
      P_b <- get_p_matrix(bl[1], eig_q1, rate1)  # nolint
             ^~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:135:16:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L135) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
        P_b <- get_p_matrix(bl[1], eig_q1, rate1)  # nolint
               ^~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:151:12:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L151) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
      P <- get_p_matrix(tl[i], eig_q1, rate1)  # nolint
           ^~~~~~~~~~~~
```
[R/sim_unlinked_tree.R:174:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L174) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/sim_unlinked_tree.R:282:1:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked_tree.R#L282) *style:* **functions should have cyclomatic complexity of less than 15, this has 19.**
```r
create_equal_alignment_tree <- function(input_tree,
^
```
[R/sim_unlinked.R:54:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked.R#L54) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
    P <- get_p_matrix(node_time, eig_q2, rate2)  # nolint
         ^~~~~~~~~~~~
```
[R/sim_unlinked.R:68:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked.R#L68) *warning:* **no visible global function definition for ‘get_p_matrix’**
```r
    P <- get_p_matrix(tl[i], eig_q1, rate1)  # nolint
         ^~~~~~~~~~~~
```
[R/sim_unlinked.R:92:23:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/sim_unlinked.R#L92) *warning:* **no visible global function definition for ‘phyDat.DNA’**
```r
  alignment_phydat <- phyDat.DNA(as.data.frame(res, stringsAsFactors = FALSE))
                      ^~~~~~~~~~
```
[R/util.R:2:10:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/R/util.R#L2) *warning:* **no visible global function definition for ‘get_p_m_rcpp’**
```r
  res <- get_p_m_rcpp(eig, branch_length, rate)
         ^~~~~~~~~~~~
```
[tests/testthat/test-calc_fraction.R:6:6:](https://github.com/thijsjanzen/nodeSub/blob/acd56e53be4e2584e32bfe67bb213fb70a45c875/tests/testthat/test-calc_fraction.R#L6) *style:* **Place a space before left parenthesis, except in a function call.**
```r
  for(frac in seq(0, 0.9)) {
     ^
```


No es necesario el all.


Espacio después de los dos puntos.


TeamCity Glyssen / Glyssen pull requests (64-bit) [Build *.*.816.e6148fc2e78c0c2798ececb89bab3b6cb0f96454](https://build.palaso.org/viewLog.html?buildId=177336&buildTypeId=Glyssen_GlyssenPullRequests64bitWithSilNuGetPackages) outcome was **FAILURE**
Summary: Tests failed: 7, passed: 2397, ignored: 18 Build time: 00:11:22
### Failed tests
```
GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange("beloved","maidens"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 920

GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideCoversTwoBlocksInVerse_OneBlockExplicitlyAssignedToOverrideCharacter_OverrideNotApplied("narrator-SNG","maidens"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideCoversTwoBlocksInVerse_OneBlockExplicitlyAssignedToOverrideCharacter_OverrideNotApplied(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 947

GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange("maidens","maidens"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 920

GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange("narrator-SNG","narrator-SNG"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 920

GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange("beloved","Solomon, king"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 920

GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange("maidens","Solomon, king"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideTwoBlocksInVerse_NeitherBlockExplicitlyAssignedToOverrideCharacter_GetsOverrideCharacterForNarratorBlocksInCoveredRange(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 920

GlyssenTests.dll: GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideCoversTwoBlocksInVerse_OneBlockExplicitlyAssignedToOverrideCharacter_OverrideNotApplied("maidens","narrator-SNG"): Test(s) failed. System.InvalidOperationException : Sequence contains no matching element
   at System.Linq.Enumerable.Single[TSource](IEnumerable`1 source, Func`2 predicate)
   at GlyssenTests.BookScriptTests.GetSngChapter1Verse4(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 892
   at GlyssenTests.BookScriptTests.GetCharacterIdInScript_OverrideCoversTwoBlocksInVerse_OneBlockExplicitlyAssignedToOverrideCharacter_OverrideNotApplied(String characterC1V4B3, String characterC1V4B4) in C:\BuildAgent\work\6f6447acf44d9c11\GlyssenTests\BookScriptTests.cs:line 947

```


Renombrar.


Ah, I missed that part.
But anyway this way it would make more sense.


Successfully deployed to following URLs:

* https://portfolio-ki6w95cni.now.sh
* https://portfolio-swart-alpha.now.sh
* https://himanshuvarshney.now.sh
* https://portfolio.varshney-himanshu.now.sh
* https://portfolio-git-master.varshney-himanshu.now.sh


Addressed by #5154.


Deployment failed with the following error:

~~~
You defined 1 build that did not match any source files (please ensure they are NOT defined in .nowignore):
~~~


Hi @mzajkowski,

I thought your package was abandoned. There was a message saying that last commit was 3 years ago. I didn't really think thoroughly about it..
I am sorry for package, I needed to use that package in my projects.  I will send some PR to your code than I will remove my package


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


Successfully deployed to following URLs:

* https://web-87dh08htp.now.sh
* https://web-git-master.youngtech.now.sh


Reading this at last! Thanks! :nerd_face:

Why not use [`gert`](https://jeroen.cran.dev/gert/) to clone and get the commit log? :-)

I especially like the plots. I was wondering whether it'd make sense to add a notion of commit "size" too.

In any case if there are less commits after review, that's interesting. Less need to improve software, software viewed as stable? Authors viewing it a bit as a journal paper?


The main use is to exactly match third party implementations when redistributing their weights


Successfully deployed to following URLs:

* https://frontendcommunitycalendar-mkhsbuddl.now.sh
* https://frontendcommunitycalendar.comcalender.now.sh
* https://frontendcommunitycalendar-git-develop.comcalender.now.sh


Add .idea folder to gitignore file


it should be free function. Not "methods" in object


Successfully deployed to following URLs:

* https://jblancoglcom-f4biaz8zw.now.sh
* https://jblancoglcom-git-master.jblancogl1.now.sh


CspNonceHeaderResponse on master already contains a solution for that, I don't understand why you want to change it.


FixMinFieldsAndIdfEd (JasonGlazer) - x86_64-MacOS-10.13-clang: Tests Failed (1993 of 2598 tests passed, 20 test warnings)

Messages:\n
 * 605 tests had: Table big diffs.
 * 158 tests had: EIO diffs.
 * 98 tests had: MDD diffs.
 * 100 tests had: MTD diffs.
 * 98 tests had: RDD diffs.
 * 37 tests had: ESO small diffs.
 * 45 tests had: MTR small diffs.
 * 12 tests had: BND diffs.
 * 1 test had: JSON big diffs.
 * 2 tests had: AUD diffs.
 * 4 tests had: ERR diffs.

Failures:\n

regression Test Summary
 * Passed: 65
 * Failed: 605

![Build Badge](http://img.shields.io/badge/build%20status-passing-green.png) ![Test Badge](http://img.shields.io/badge/tests%20passed-76.71%25-red.png)


Successfully deployed to following URLs:

* https://gstcalculator-bj41bko1q.now.sh
* https://gstcalculator.now.sh
* https://gstcalculator.hirokbanik.now.sh
* https://gstcalculator-git-master.hirokbanik.now.sh


Successfully deployed to following URLs:

* https://meetup-redirecter-5wfqki3fz.now.sh
* https://meetup.dev-night.io
* https://m.dev-night.io
* https://meetup-redirecter.dev-night1.now.sh
* https://meetup-redirecter-git-master.dev-night1.now.sh


Successfully deployed to following URLs:

* https://zpie-l7cu8r632.now.sh
* https://zpie.now.sh
* https://zpie.brucegne.now.sh
* https://zpie-git-master.brucegne.now.sh


Deployment failed with the following error:

~~~
Could not find a secret by name "nacelle_space_id_starship_lite"
~~~


Successfully deployed to following URLs:

* https://gatsby-theme-documentation-qow1r5ggr.now.sh
* https://docs-theme.johno.com
* https://gatsby-theme-documentation.johno1.now.sh
* https://gatsby-theme-documentation-git-master.johno1.now.sh


[R/ABC_SMC.R:11:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L11) *style:* **Lines should not be more than 80 characters.**
```r
# @param    current                 vector       Current parameter combination for which we are determining the weight
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:12:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L12) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                   scalar       standard deviation of the perturbation
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:13:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L13) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function  function     Function to calculate the prior probability of a set of parameters
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:36:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L36) *style:* **Lines should not be more than 80 characters.**
```r
# @brief apply the ABC routine used in our Methods in Ecology and Evolution Paper
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:43:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L43) *style:* **Lines should not be more than 80 characters.**
```r
# @param    statistics                    vector      A vector containing functions that take a tree as an argument and return a single scalar value (the statistic).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:44:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L44) *style:* **Lines should not be more than 80 characters.**
```r
# @param    simulation_function           vector      A function that implements the diversification model and returns an object of class phylo
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:45:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L45) *style:* **Lines should not be more than 80 characters.**
```r
# @param    init_epsilon_values           vector      A vector containing the initial threshold values for the summary statistics from the vector statistics.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:46:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L46) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_generating_function     function    Function to generate parameters from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:47:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L47) *style:* **Lines should not be more than 80 characters.**
```r
# @param    prior_density_function        function    Function to calculate the prior probability of a set of parameters (should match prior_generating_function in shape)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:48:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L48) *style:* **Lines should not be more than 80 characters.**
```r
# @param    number_of_particles           scalar      Number of particles to be used per iteration of the ABC-SMC algorithm.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:49:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L49) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                         scalar      Standard deviation of the perturbance distribution (perturbance distribution is a gaussian with mean 0).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:50:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L50) *style:* **Lines should not be more than 80 characters.**
```r
# @param    stop_rate                     scalar      If the acceptance rate drops below \code{stopRate}, stop the ABC-SMC algorithm  and assume convergence.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:51:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L51) *style:* **Lines should not be more than 80 characters.**
```r
# @return                                 matrix      A matrix with n columns, where n is the number of parameters you are trying to estimate.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:75:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L75) *style:* **Lines should not be more than 80 characters.**
```r
#'   from the prior distribution of these parameters (e.g. a function returning lambda and mu in case of the birth-death model)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:126:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L126) *style:* **functions should have cyclomatic complexity of less than 15, this has 42.**
```r
abc_smc_nltt <- function(tree,
^
```
[R/ABC_SMC.R:276:13:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L276) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
        if ( (number_accepted / tried) < stop_rate) {
            ^
```
[R/ABC_SMC.R:301:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L301) *style:* **Lines should not be more than 80 characters.**
```r
# @brief Estimate the likelihood of a given tree, provided a likelihood function, using a Monte Carlo Markov Chain
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:308:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L308) *style:* **Lines should not be more than 80 characters.**
```r
# @param    likelihood_function   function    Function that calculates the likelihood of our diversification model, given the tree.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:309:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L309) *style:* **Lines should not be more than 80 characters.**
```r
#                                             function should be of the format function(parameters, phy).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:310:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L310) *style:* **Lines should not be more than 80 characters.**
```r
# @param    parameters            vector      Initial parameters to start the chain.
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:311:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L311) *style:* **Lines should not be more than 80 characters.**
```r
# @param    logtransforms         scalar      Whether to perform jumps on logtransformed parameters (TRUE) or not (FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:313:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L313) *style:* **Lines should not be more than 80 characters.**
```r
# @param    burnin                scalar      Length of the burnin, default is 30% of iterations
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:315:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L315) *style:* **Lines should not be more than 80 characters.**
```r
# @param    sigma                 scalar      Standard deviation of the jumping distribution, which is N(0, sigma).
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:316:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L316) *style:* **Lines should not be more than 80 characters.**
```r
# @return                         mcmc        An MCMC object, as used by the package "coda".
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/ABC_SMC.R:320:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/ABC_SMC.R#L320) *style:* **functions should have cyclomatic complexity of less than 15, this has 34.**
```r
mcmc_nltt <- function(phy, likelihood_function,
^
```
[R/get_average_nltt_matrix.R:14:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/get_average_nltt_matrix.R#L14) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
get_average_nltt_matrix <- function(
^
```
[R/get_n_lineages.R:17:12:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/get_n_lineages.R#L17) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
    return(1:length(phylogeny$tip.label))
           ^
```
[R/nltt_diff_exact_extinct.R:27:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L27) *style:* **functions should have cyclomatic complexity of less than 15, this has 23.**
```r
nltt_diff_exact_extinct <- function(
^
```
[R/nltt_diff_exact_extinct.R:50:27:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L50) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nltt_diff_exact_extinct.R:57:25:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L57) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nltt_diff_exact_extinct.R:82:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L82) *style:* **Lines should not be more than 80 characters.**
```r
    species_number_n <- species_number / max(species_number)  #normalize lineages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:87:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L87) *style:* **Lines should not be more than 80 characters.**
```r
    event_times2_n <- 1 - event_times2 / min(event_times2) #normalize branching times
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:88:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L88) *style:* **Lines should not be more than 80 characters.**
```r
    species_number2_n <- species_number2 / max(species_number2)  #normalize lineages
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:136:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L136) *style:* **Commented code should be removed.**
```r
  # testit::assert(event_times[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:137:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L137) *style:* **Commented code should be removed.**
```r
  # testit::assert(species_number[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:138:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L138) *style:* **Commented code should be removed.**
```r
  # testit::assert(event_times2[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:139:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L139) *style:* **Commented code should be removed.**
```r
  # testit::assert(species_number[1] >= 0.0)
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:141:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L141) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(event_times >= 0.0 & event_times <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:142:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L142) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(species_number >= 0.0 & species_number <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:143:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L143) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(event_times2 >= 0.0 & event_times2 <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:144:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L144) *style:* **Commented code should be removed.**
```r
  # testit::assert(all(species_number >= 0.0 & species_number <= 1.0))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltt_diff_exact_extinct.R:183:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L183) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:184:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L184) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nltt_diff_exact_extinct.R:185:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltt_diff_exact_extinct.R#L185) *style:* **Trailing blank lines are superfluous.**
```r

^
```
[R/nLTTDiff.R:59:27:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L59) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "since"){
                          ^~
```
[R/nLTTDiff.R:66:25:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L66) *style:* **There should be a space between right parenthesis and an opening curly brace.**
```r
  if (time_unit == "ago"){
                        ^~
```
[R/nLTTDiff.R:186:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L186) *style:* **Lines should not be more than 80 characters.**
```r
#' Calculates the exact difference between the lineage through time curves of tree1 & tree2 (normalized in time and for the number of lineages)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:274:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L274) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:275:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L275) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:283:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L283) *style:* **Lines should not be more than 80 characters.**
```r
#' @usage nLTTstat(tree1, tree2, distance_method = "abs", ignore_stem = TRUE, log_transform = FALSE)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:344:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L344) *style:* **Lines should not be more than 80 characters.**
```r
# @param    distance_method        string     Method to calculate the difference, either absolute, or squared
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:345:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L345) *style:* **Lines should not be more than 80 characters.**
```r
# @param    ignore_stem            logical    Should the phylogeny its stem be ignored?
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nLTTDiff.R:346:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nLTTDiff.R#L346) *style:* **Lines should not be more than 80 characters.**
```r
# @return                          scalar     normalized Lineage-Through-Time difference between tree1 & tree2
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[R/nltts_plot.R:19:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/nltts_plot.R#L19) *style:* **functions should have cyclomatic complexity of less than 15, this has 17.**
```r
nltts_plot <- function(
^
```
[R/plot_nLTT.R:36:23:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/plot_nLTT.R#L36) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
nltt_plot <- function( phy, xlab = "Normalized Time",
                      ^
```
[R/plot_nLTT.R:51:28:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                           ^
```
[R/plot_nLTT.R:51:33:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/plot_nLTT.R#L51) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs( min( xy[, 1])) #make sure time runs from 0..T
                                ^
```
[R/plot_nLTT.R:52:28:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/plot_nLTT.R#L52) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] / max( xy[, 1])      #normalize time
                           ^
```
[R/plot_nLTT.R:94:32:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/plot_nLTT.R#L94) *style:* **Do not place spaces around code in parentheses or square brackets.**
```r
  xy[, 1] <- xy[, 1] + abs(min( xy[, 1])) #make sure time runs from 0..T
                               ^
```
[R/stretch_nltt_matrix.R:22:1:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/R/stretch_nltt_matrix.R#L22) *style:* **functions should have cyclomatic complexity of less than 15, this has 16.**
```r
stretch_nltt_matrix <- function(
^
```
[tests/testthat/test-abc_smc_nltt.R:30:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-abc_smc_nltt.R#L30) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-abc_smc_nltt.R:35:3:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-abc_smc_nltt.R#L35) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-abc_smc_nltt.R:49:3:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-abc_smc_nltt.R#L49) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- stats::optimize(f = tofit, interval = c(0, 1))
  ^~
```
[tests/testthat/test-abc_smc_nltt.R:55:3:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-abc_smc_nltt.R#L55) *style:* **Variable and function name style should be snake_case.**
```r
  A <- abc_smc_nltt(
  ^
```
[tests/testthat/test-get_average_nltt.R:10:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-get_average_nltt.R#L10) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-get_average_nltt.R:41:5:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-get_average_nltt.R#L41) *style:* **Commented code should be removed.**
```r
  # suppressWarnings(RNGversion("3.5.0"))
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
```
[tests/testthat/test-mcmc_nltt.R:14:3:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-mcmc_nltt.R#L14) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-mcmc_nltt.R:31:3:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-mcmc_nltt.R#L31) *style:* **Variable and function name style should be snake_case.**
```r
  ML <- optim(par = c(1, 0.001), fn = tofit)
  ^~
```
[tests/testthat/test-mcmc_nltt.R:58:3:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-mcmc_nltt.R#L58) *style:* **Variable and function name style should be snake_case.**
```r
  LL_BD <- function(params, phy) {
  ^~~~~
```
[tests/testthat/test-nltt_diff_exact_extinct.R:29:16:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-nltt_diff_exact_extinct.R#L29) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages1 <- 1:length(event_times)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:30:16:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-nltt_diff_exact_extinct.R#L30) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages2 <- 1:length(event_times2)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:77:16:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-nltt_diff_exact_extinct.R#L77) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages1 <- 1:length(event_times)
               ^
```
[tests/testthat/test-nltt_diff_exact_extinct.R:78:16:](https://github.com/Neves-P/nLTT/blob/839a7da6e6f00a4bcf38dd506daec880ac8f22cc/tests/testthat/test-nltt_diff_exact_extinct.R#L78) *warning:* **Avoid 1:length(...) expressions, use seq_len.**
```r
  lineages2 <- 1:length(event_times2)
               ^
```


Successfully deployed to following URLs:

* https://link-ac89kxmob.now.sh
* https://link.jianzhao.org
* https://www.jianzhao.org
* https://payroll.jianzhao.org
* https://link.cbdyzj.now.sh
* https://link-git-master.cbdyzj.now.sh


Interactor Facade needs backticks

```
`Interactor Facade`
```


:point_right: click here to view a full list of the events :point_left:


Now yes, but back when this was added, it was part of Chronos 1.2 (`"php": "^5.5.9|^7"`).


https://qgis.org/pyqgis/3.4/core/QgsProjectBadLayerHandler.html

if you change this file, can you update the link at the same time? It's a 404


Successfully deployed to following URLs:

* https://link-dgnzlev0s.now.sh
* https://link.jianzhao.org
* https://www.jianzhao.org
* https://payroll.jianzhao.org
* https://link.cbdyzj.now.sh
* https://link-git-master.cbdyzj.now.sh


typo?
`validateLayers` ?

Side question, should we follow PEP8 convention?


Good point! https://github.com/square/javapoet/pull/756


TeamCity Identity and Access Management / Identity - RoleManagementAPI [Build 780-IDAM-336-ApiProblems](https://teamcity.nice.org.uk/viewLog.html?buildId=64290&buildTypeId=IdentityandAccessManagement_RoleManagementAPI) outcome was **FAILURE**
Summary: UnitTests\Authorisation.WebAPI\Services\UserServiceTests.cs(451,30): error CS0029: Cannot implicitly convert type 'System.Guid' to 'string' (new); exit code 1 (new) Build time: 00:00:51


letzter Kommentar dazu...


@arnova : In the main script, I think you still want to test for `/usr/local/share/arno-iptables-firewall/environment` and `/usr/share/arno-iptables-firewall/environment`.  Maybe this:
```
  if [ -f /usr/local/share/arno-iptables-firewall/environment ]; then
    ENV_FILE="/usr/local/share/arno-iptables-firewall/environment"
  elif [ -f /usr/share/arno-iptables-firewall/environment ]; then
    ENV_FILE="/usr/share/arno-iptables-firewall/environment"
  else
    ENV_FILE="${0%/*/*}/share/environment"
  fi
```
BTW, your `${0%/*/*}` is a cool solution.

Or, this may work as well...
```
ENV_FILE="/usr/share/arno-iptables-firewall/environment"
if [ ! -f "$ENV_FILE" ]; then
  ENV_FILE="${0%/*/*}/share/environment"
fi
```


Successfully deployed to following URLs:

* https://quartz-hxetb6g4h.now.sh
* https://quartz.connctd.now.sh
* https://quartz-git-master.connctd.now.sh


Successfully deployed to following URLs:

* https://gstcalculator-n1h9uwy4r.now.sh
* https://gstcalculator.now.sh
* https://gstcalculator.hirokbanik.now.sh
* https://gstcalculator-git-master.hirokbanik.now.sh


Successfully deployed to following URLs:

* https://interpride-rkcz616q5.now.sh
* https://interpride2020.org
* https://www.interpride2020.org
* https://interpride.oslopride1.now.sh
* https://interpride-git-master.oslopride1.now.sh


Thanks @darbyjohnston ! I went a slightly different route in #638 where I use the `setUp()` and `tearDown()` methods from `unittests.TestCase`


# Specs execution successful
:scroll: [View logs](http://bamboo.comnull)
### Plans updated

Bamboo specs have been successfully imported and the following plans have been updated.

Project | Plan | Build
---|---|---
[Test](http://bamboo.com/browse/TEST) | [Comment test](http://bamboo.com/browse/TEST-CTEST)  | :white_check_mark: [\#1](http://bamboo.com/browse/TEST-CTEST-1)
[New project](http://bamboo.com/browse/NEW) | [Disabled plan](http://bamboo.com/browse/NEW-DISABLED) **disabled** | :white_check_mark: [\#1](http://bamboo.com/browse/NEW-DISABLED-1)

### Deployments updated

Bamboo specs have been successfully imported and the following deployment projects have been updated.

|Deployment project |
----|
[Deployment test](http://bamboo.com/deploy/viewDeploymentProjectVersions.action?id=2162689)|


`@document_url` should be dynamically named : `instance_variable_get("@#{field}_url")`


Successfully deployed to following URLs:

* https://taal-nqjnq4u06.now.sh
* https://taal.now.sh
* https://taal.jmrocela.now.sh
* https://taal-git-master.jmrocela.now.sh


Successfully deployed to following URLs:

* https://gatsby-functions-8bjf3yg4i.now.sh
* https://gatsby-functions-three-khaki.now.sh
* https://gatsby-functions.dam6pl.now.sh
* https://gatsby-functions-git-master.dam6pl.now.sh


@darxriggs thanks for the hint - done...


![image](https://user-images.githubusercontent.com/18259468/72326191-c425ce00-36d4-11ea-8e61-5c850f8d06e2.png)
When I set attribute type "integer" and if its value is 0 then it gives me this error. It should accept 0 right?


Old systems (like Tru64 UNIX) do not have /dev/stderr. Even recent systems has trouble to open that device, for example logged in as root and changed to unprivileged user with the su command.


Successfully deployed to following URLs:

* https://love-82hbprlun.now.sh
* https://love-gules-one.now.sh
* https://love.tsz.now.sh
* https://love-git-master.tsz.now.sh


@Naros, can you remind me: what's the meaning of that version property here? Thanks!


Deployment failed with the following error:

~~~
Could not find a secret by name "AUTH0_DOMAIN"
~~~


I agree that would be the more appropriate behavior. The issue is that this is bound to the `WEBPACKEXT_STORAGE_CLS` config (i.e. if it's set to `FileStorage` or `LinkStorage`) and e.g. `invenio webpack build` is already running in the `./scripts/bootstrap`... A solution would be to override it via `INVENIO_` env config, but I think it's better to think of the overall use cases and have a central point/config that decides these switches, e.g. `FLASK_ENV=(production|development)`


Deployment failed with the following error:

~~~
The property `type` is not allowed in now.json when using Now 2.0 – please remove it.
~~~


Successfully deployed to following URLs:

* https://danestves-f55hoqnmn.now.sh
* https://danestves.com
* https://danestves.danestves.now.sh
* https://danestves-git-master.danestves.now.sh


TeamCity Architecture Team / Java TC Platform / otj-server / PR Build [Build 3.0.21-SNAPSHOT.114/merge.28](https://teamcity.otenv.com/viewLog.html?buildId=11734612&buildTypeId=ArchitectureTeam_JavaTcPlatform_OtjServer_PrBuild) outcome was **SUCCESS**
Summary: Tests passed: 85, ignored: 2 Build time: 00:05:42


Àh, có set qua cái đó mà thấy xấu xấu nên dùng cái này :v


Fixed in the latest commit


Failed to assign a domain to your deployment due to the following error:

~~~
The domain byronwade.com couldn't be found.
~~~

([Learn more](https://zeit.co/bcw1995/byronwadecom/cholgpv55) or [visit](https://byronwadecom-cholgpv55.now.sh) the non-aliased deployment)


Successfully deployed to following URLs:

* https://theglandergithubio-nosmci37v.now.sh
* https://glander.now.sh
* https://theglandergithubio.theglander.now.sh
* https://theglandergithubio-git-master.theglander.now.sh


adding gh pages


Deployment failed with the following error:

~~~
An internal error occurred with ZEIT Now.
~~~


R code for iNMF


Successfully deployed to following URLs:

* https://spa-bu6eqwr8x.now.sh
* https://spa-theta-tan.now.sh
* https://spa.ielvis.now.sh
* https://spa-git-master.ielvis.now.sh


Successfully deployed to following URLs:

* https://danestves-1xtiko80k.now.sh
* https://danestves.com
* https://danestves.danestves.now.sh
* https://danestves-git-master.danestves.now.sh


on graphql playground, use:
{
	getUsers {
    name
    phone
  }
}

to get all users,

use:

mutation {
	addUser(name: "some_name", phone: "some_phone") {
    name
    phone
  }
}

to add user with name: "some_name" and phone "some_phone".