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"lineno": 22 }, { "from_module": "Tests.test_Align_codonalign", "imports": "Bio.Align.CodonAligner", "type": "from_import", "relative_level": 0, "module_part": "Bio.Align", "symbol_part": "CodonAligner", "lineno": 23 }, { "from_module": "Tests.test_Align_codonalign", "imports": "Bio.Align.analysis.calculate_dn_ds", "type": "from_import", "relative_level": 0, "module_part": "Bio.Align.analysis", "symbol_part": "calculate_dn_ds", "lineno": 24 }, { "from_module": "Tests.test_Align_codonalign", "imports": "Bio.Align.analysis.calculate_dn_ds_matrix", "type": "from_import", "relative_level": 0, "module_part": "Bio.Align.analysis", "symbol_part": "calculate_dn_ds_matrix", "lineno": 25 }, { "from_module": "Tests.test_Align_codonalign", "imports": "Bio.Align.analysis.mktest", "type": "from_import", "relative_level": 0, "module_part": "Bio.Align.analysis", "symbol_part": "mktest", "lineno": 26 }, { "from_module": "Tests.test_Align_codonalign", "imports": "Bio.Data.CodonTable", "type": 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"relative_level": 0, "module_part": "Bio.Graphics.GenomeDiagram._Colors", "symbol_part": "ColorTranslator", "lineno": 44 }, { "from_module": "Tests.test_GenomeDiagram", "imports": "Bio.Graphics.GenomeDiagram._Graph.GraphData", "type": "from_import", "relative_level": 0, "module_part": "Bio.Graphics.GenomeDiagram._Graph", "symbol_part": "GraphData", "lineno": 45 }, { "from_module": "Tests.test_GenomeDiagram", "imports": "Bio.SeqFeature.SeqFeature", "type": "from_import", "relative_level": 0, "module_part": "Bio.SeqFeature", "symbol_part": "SeqFeature", "lineno": 46 }, { "from_module": "Tests.test_GenomeDiagram", "imports": "Bio.SeqFeature.SimpleLocation", "type": "from_import", "relative_level": 0, "module_part": "Bio.SeqFeature", "symbol_part": "SimpleLocation", "lineno": 47 } ], "Tests.test_geo": [ { "from_module": "Tests.test_geo", "imports": "Bio.Geo", "type": "from_import", "relative_level": 0, "module_part": "Bio", "symbol_part": "Geo", "lineno": 10 } ], 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"Bio.Phylo.PAML.codeml.Codeml.read_ctl_file", "lineno": 42, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.codeml", "callee": "Bio.Phylo.PAML.codeml.Codeml.run", "lineno": 55, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.baseml", "callee": "Bio.Phylo.PAML.baseml.Baseml.__init__", "lineno": 76, "resolution": "qualified_module_call" }, { "caller": "Tests.PAML.gen_results.baseml", "callee": "Bio.Phylo.PAML.baseml.Baseml.read_ctl_file", "lineno": 91, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.baseml", "callee": "Bio.Phylo.PAML.baseml.Baseml.run", "lineno": 97, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.baseml", "callee": "Bio.Phylo.PAML.baseml.Baseml.read_ctl_file", "lineno": 102, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.baseml", "callee": "Bio.Phylo.PAML.baseml.Baseml.run", "lineno": 108, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.yn00", "callee": "Bio.Phylo.PAML.yn00.Yn00.__init__", "lineno": 121, "resolution": "qualified_module_call" }, { "caller": "Tests.PAML.gen_results.yn00", "callee": "Bio.Phylo.PAML.yn00.Yn00.read_ctl_file", "lineno": 125, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.yn00", "callee": "Bio.Phylo.PAML.yn00.Yn00.run", "lineno": 129, "resolution": "local_typed_method_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.print_usage", "lineno": 156, "resolution": "direct_name_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.print_usage", "lineno": 163, "resolution": "direct_name_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.print_usage", "lineno": 171, "resolution": "direct_name_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.print_usage", "lineno": 174, "resolution": "direct_name_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.codeml", "lineno": 176, "resolution": "direct_name_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.baseml", "lineno": 178, "resolution": "direct_name_call" }, { "caller": "Tests.PAML.gen_results.", "callee": "Tests.PAML.gen_results.yn00", "lineno": 180, "resolution": "direct_name_call" } ] }, "cyclic_clusters": [ [ "Bio.PDB.Atom", "Bio.PDB.Chain", "Bio.PDB.Entity", "Bio.PDB.Model", "Bio.PDB.Residue", "Bio.PDB.Structure", "Bio.PDB.internal_coords" ], [ "Bio.Align", "Bio.Align.substitution_matrices", "Bio.AlignIO", "Bio.GenBank", "Bio.GenBank.Scanner", "Bio.Seq", "Bio.SeqFeature", "Bio.SeqIO", "Bio.SeqIO.AbiIO", "Bio.SeqIO.AceIO", "Bio.SeqIO.FastaIO", "Bio.SeqIO.GckIO", "Bio.SeqIO.GfaIO", "Bio.SeqIO.IgIO", "Bio.SeqIO.InsdcIO", "Bio.SeqIO.NibIO", "Bio.SeqIO.PdbIO", "Bio.SeqIO.PhdIO", "Bio.SeqIO.PirIO", "Bio.SeqIO.QualityIO", "Bio.SeqIO.SeqXmlIO", "Bio.SeqIO.SffIO", "Bio.SeqIO.SnapGeneIO", "Bio.SeqIO.SwissIO", "Bio.SeqIO.TabIO", "Bio.SeqIO.TwoBitIO", "Bio.SeqIO.UniprotIO", "Bio.SeqIO.XdnaIO", "Bio.SeqRecord", "Bio.Sequencing.Phd", "Bio.SwissProt", "BioSQL.BioSeq" ], [ "Bio.Phylo.BaseTree", "Bio.Phylo.CDAO", "Bio.Phylo.CDAOIO", "Bio.Phylo.NeXML", "Bio.Phylo.NeXMLIO", "Bio.Phylo.Newick", "Bio.Phylo.NewickIO", "Bio.Phylo.NexusIO", "Bio.Phylo.PhyloXML", "Bio.Phylo.PhyloXMLIO", "Bio.Phylo._io" ], [ "Bio.Blast", "Bio.Blast._parser" ], [ "Bio.motifs", "Bio.motifs.alignace", "Bio.motifs.clusterbuster", "Bio.motifs.jaspar", "Bio.motifs.mast", "Bio.motifs.meme", "Bio.motifs.minimal", "Bio.motifs.pfm", "Bio.motifs.transfac", "Bio.motifs.xms" ], [ "Bio.SeqUtils.IsoelectricPoint", "Bio.SeqUtils.ProtParam" ] ], "unresolved": [ { "module": "setup", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "setup", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .decompressobj(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .decompress(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .crc32(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 605, "pattern": "name_call_unresolved", "note": "Call to '_open(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.bgzf", "lineno": 606, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .popitem(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 641, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .fileno(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 814, "pattern": "name_call_unresolved", "note": "Call to '_open(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.bgzf", "lineno": 816, "pattern": "name_call_unresolved", "note": "Call to '_open(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.bgzf", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 829, "pattern": "attribute_call", "note": "Call via attribute access .compressobj(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .compress(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 838, "pattern": "attribute_call", "note": "Call via attribute access .crc32(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 841, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 843, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 845, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 845, "pattern": "attribute_call", "note": "Call via attribute access .crc32(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 856, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 867, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 887, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 900, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 901, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 918, "pattern": "attribute_call", "note": "Call via attribute access .fileno(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 944, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 951, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 954, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.bgzf", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 185, "pattern": "name_call_unresolved", "note": "Call to 'key_function(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.File", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 216, "pattern": "self_method_not_found", "note": "self.keys(...) not found in class '_IndexedSeqFileDict' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.File", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 240, "pattern": "self_method_not_found", "note": "self._key_function(...) not found in class '_IndexedSeqFileDict' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.File", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 302, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.File", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .isabs(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 425, "pattern": "name_call_unresolved", "note": "Call to 'proxy_factory(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.File", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 444, "pattern": "name_call_unresolved", "note": "Call to 'proxy_factory(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.File", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .isabs(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .isabs(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 492, "pattern": "name_call_unresolved", "note": "Call to 'proxy_factory(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.File", "lineno": 495, "pattern": "name_call_unresolved", "note": "Call to 'key_function(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.File", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .islice(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 568, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .popitem(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 574, "pattern": "self_method_not_found", "note": "self._proxy_factory(...) not found in class '_SQLiteManySeqFilesDict' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.File", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 578, "pattern": "self_method_not_found", "note": "self._key_function(...) not found in class '_SQLiteManySeqFilesDict' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.File", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .popitem(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 612, "pattern": "self_method_not_found", "note": "self._proxy_factory(...) not found in class '_SQLiteManySeqFilesDict' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.File", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.File", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .popitem(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 501, "pattern": "self_method_not_found", "note": "self.decode(...) not found in class 'alignment_function' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.pairwise2", "lineno": 508, "pattern": "self_method_not_found", "note": "self.alignment_function(...) not found in class 'align' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.pairwise2", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 514, "pattern": "name_call_unresolved", "note": "Call to 'new_alignment_function(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 672, "pattern": "name_call_unresolved", "note": "Call to 'gap_B_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 678, "pattern": "name_call_unresolved", "note": "Call to 'gap_A_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 697, "pattern": "name_call_unresolved", "note": "Call to 'match_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 711, "pattern": "name_call_unresolved", "note": "Call to 'gap_A_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 713, "pattern": "name_call_unresolved", "note": "Call to 'gap_A_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 721, "pattern": "name_call_unresolved", "note": "Call to 'gap_B_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 723, "pattern": "name_call_unresolved", "note": "Call to 'gap_B_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 791, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 833, "pattern": "name_call_unresolved", "note": "Call to 'match_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 1173, "pattern": "name_call_unresolved", "note": "Call to 'Alignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 1223, "pattern": "name_call_unresolved", "note": "Call to 'gap_fn(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.pairwise2", "lineno": 1232, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1339, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1344, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1382, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1383, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1396, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1398, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1404, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1405, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1407, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1410, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1411, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1411, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1412, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1414, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1417, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1417, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1417, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1417, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.pairwise2", "lineno": 1432, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .__contains__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .removeprefix(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .__iter__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 524, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 536, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 538, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 556, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .__mul__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 576, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .__mul__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 592, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 625, "pattern": "attribute_call", "note": "Call via attribute access .__mul__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 626, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 771, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 807, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 848, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 902, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 908, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 956, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .defaultdict(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 998, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1002, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1033, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1034, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1058, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1064, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1065, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1108, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1150, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1151, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1192, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1194, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1205, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1247, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1249, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1260, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1302, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1304, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1315, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1339, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1341, "pattern": "attribute_call", "note": "Call via attribute access .removeprefix(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1349, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1357, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1382, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1384, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1392, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1400, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1445, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1452, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1497, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1504, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1511, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1518, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1609, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1616, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1656, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1666, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1703, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1713, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1751, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1761, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1799, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1809, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1857, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1857, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1863, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1905, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1905, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1911, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1933, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1933, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1935, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1935, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1949, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 1949, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1983, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1987, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1988, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 1994, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class '_SeqAbstractBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Seq", "lineno": 2130, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2238, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2263, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2263, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2278, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2278, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2314, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2323, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2339, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2341, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2343, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2343, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2371, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2375, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2381, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2387, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2426, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2434, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2442, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2481, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2485, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2490, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2542, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2545, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2551, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2556, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2565, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2567, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2586, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2589, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2590, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2601, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2618, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2618, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2623, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2623, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2632, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2640, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2651, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2652, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2662, "pattern": "name_call_unresolved", "note": "Call to 'UndefinedSequenceError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Seq", "lineno": 2666, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2667, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2681, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2706, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2708, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2710, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2710, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2726, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2728, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2730, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2730, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2825, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2830, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2834, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2835, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2849, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2857, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2858, "pattern": "attribute_call", "note": "Call via attribute access .TranslationError(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2862, "pattern": "attribute_call", "note": "Call via attribute access .TranslationError(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2865, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2866, "pattern": "attribute_call", "note": "Call via attribute access .TranslationError(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2874, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2893, "pattern": "attribute_call", "note": "Call via attribute access .TranslationError(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2899, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2906, "pattern": "attribute_call", "note": "Call via attribute access .TranslationError(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 2909, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3007, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3010, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3067, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3071, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3075, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3076, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3077, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3132, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3136, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3140, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3141, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3142, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3197, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3201, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3205, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3206, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3207, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3261, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3265, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3269, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3270, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Seq", "lineno": 3271, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 86, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 87, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 88, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 89, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 93, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 97, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 102, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 107, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 112, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 116, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access ._shift(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 413, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 676, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 689, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 691, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 693, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 697, "pattern": "name_call_unresolved", "note": "Call to '_split(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 707, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 712, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 736, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 747, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 749, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 900, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 907, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 917, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 922, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .groupdict(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 929, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 935, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 938, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 943, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 944, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 953, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 957, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 980, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 987, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 989, "pattern": "name_call_unresolved", "note": "Call to 'LocationParserError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 1239, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1240, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1393, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1554, "pattern": "attribute_call", "note": "Call via attribute access ._shift(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1645, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1707, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1709, "pattern": "attribute_call", "note": "Call via attribute access .reduce(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1788, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1789, "pattern": "name_call_unresolved", "note": "Call to 'UncertainPosition(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqFeature", "lineno": 1790, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1792, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1794, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1796, "pattern": "attribute_call", "note": "Call via attribute access .groups(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1804, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1806, "pattern": "attribute_call", "note": "Call via attribute access .groups(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1807, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1855, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 1869, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'ExactPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 1874, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'ExactPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 1984, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 2011, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'WithinPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2017, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'WithinPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2085, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 2112, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'BetweenPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2118, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'BetweenPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2161, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 2173, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'BeforePosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2225, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 2237, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'AfterPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2289, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqFeature", "lineno": 2318, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'OneOfPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2324, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'OneOfPosition' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqFeature", "lineno": 2325, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .__setitem__(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 379, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqRecord", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access ._from_validated(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access ._shift(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 749, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 855, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1000, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1014, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1014, "pattern": "attribute_call", "note": "Call via attribute access ._shift(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1018, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1033, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1036, "pattern": "attribute_call", "note": "Call via attribute access .__setitem__(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1082, "pattern": "attribute_call", "note": "Call via attribute access ._shift(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1097, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1130, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1136, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1140, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1181, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1187, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1191, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1200, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1207, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1366, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1368, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1369, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1372, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1398, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1413, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1418, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1424, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1490, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1497, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqRecord", "lineno": 1527, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .testmod(...) - target object type not statically resolved." }, { "module": "Bio._utils", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .getsitepackages(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .getusersitepackages(...) - target object type not statically resolved." }, { "module": "Bio", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Affy.CelFile", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .view(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Affy.CelFile", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.a2m", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.AlignInfo", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 880, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 897, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 969, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1032, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1033, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1034, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1035, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1076, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1113, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1172, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1176, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1189, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1191, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1239, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1246, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1247, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.analysis", "lineno": 1255, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bed", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 123, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 168, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 173, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 178, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 183, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 184, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 185, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 186, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 191, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 196, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 201, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 202, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 207, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .calculate_reductions(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .to_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .to_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .updateMaxFieldSize(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .tofile(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .generate(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .generate_summaries(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 588, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .truncate(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .addOffsetSize(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .addKeysFromRow(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .fromfile(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 730, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 782, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 801, "pattern": "name_call_unresolved", "note": "Call to 'item_converter(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 803, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 818, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 819, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .decompress(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 861, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 862, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 864, "pattern": "attribute_call", "note": "Call via attribute access .decompress(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 866, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 888, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 953, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 953, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 967, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 967, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 967, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 968, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 968, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 968, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1025, "pattern": "attribute_call", "note": "Call via attribute access .is_integer(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1089, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1090, "pattern": "attribute_call", "note": "Call via attribute access .compress(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1100, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1102, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1103, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1104, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1104, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1105, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .truncate(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1110, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .truncate(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1116, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1118, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1119, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .compress(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1121, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1122, "pattern": "attribute_call", "note": "Call via attribute access .truncate(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .compress(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1126, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1127, "pattern": "attribute_call", "note": "Call via attribute access .truncate(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1159, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1166, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1167, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1169, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1177, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1190, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1200, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1219, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1243, "pattern": "self_method_not_found", "note": "self.get_value(...) not found in class '_ExtraIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Align.bigbed", "lineno": 1249, "pattern": "self_method_not_found", "note": "self.get_value(...) not found in class '_ExtraIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Align.bigbed", "lineno": 1250, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1258, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1262, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1280, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1283, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1288, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1289, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1290, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1292, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1294, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1295, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1310, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1315, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1316, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1333, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1340, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1348, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1354, "pattern": "attribute_call", "note": "Call via attribute access .iinfo(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1372, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1373, "pattern": "attribute_call", "note": "Call via attribute access .to_bytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1374, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1376, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1377, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1378, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1401, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1421, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1442, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1450, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1451, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1452, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1453, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1461, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1462, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1468, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1470, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1471, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1472, "pattern": "attribute_call", "note": "Call via attribute access .float32(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1475, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1509, "pattern": "attribute_call", "note": "Call via attribute access .calcLevelSizes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1527, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1542, "pattern": "attribute_call", "note": "Call via attribute access .traverse(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1554, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1633, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1645, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1655, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1668, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1685, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1708, "pattern": "attribute_call", "note": "Call via attribute access .traverse_range(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1748, "pattern": "attribute_call", "note": "Call via attribute access .traverse(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1751, "pattern": "attribute_call", "note": "Call via attribute access .traverse(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1756, "pattern": "attribute_call", "note": "Call via attribute access .traverse_range(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1759, "pattern": "attribute_call", "note": "Call via attribute access .traverse_range(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1762, "pattern": "attribute_call", "note": "Call via attribute access .traverse_range(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1765, "pattern": "attribute_call", "note": "Call via attribute access .traverse_range(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1783, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1789, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1797, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1806, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1835, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1846, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1853, "pattern": "name_call_unresolved", "note": "Call to 'NonLeaf(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 1857, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1858, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1862, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1870, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1871, "pattern": "name_call_unresolved", "note": "Call to 'Leaf(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 1880, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1901, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1908, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1909, "pattern": "name_call_unresolved", "note": "Call to 'NonLeaf(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 1918, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1921, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 1998, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2010, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2011, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2013, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2021, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2022, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2041, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2042, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2044, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2051, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2053, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2067, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2078, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2089, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2094, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2095, "pattern": "attribute_call", "note": "Call via attribute access .calcLevelSizes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2097, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2118, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2124, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2137, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2138, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2142, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2142, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2148, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2157, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2158, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2161, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2162, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2163, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2163, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2171, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2172, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2175, "pattern": "name_call_unresolved", "note": "Call to 'Node(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigbed", "lineno": 2182, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2187, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2195, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2196, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2199, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2199, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2209, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2224, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2224, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2226, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2227, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2230, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2233, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2238, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2238, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2239, "pattern": "attribute_call", "note": "Call via attribute access .tofile(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigbed", "lineno": 2241, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 36, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigmaf", "lineno": 41, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigmaf", "lineno": 46, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigmaf", "lineno": 51, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigmaf", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .Struct(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .decompressobj(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .decompress(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access ._read_header(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .PrintedAlignmentParser(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .tobytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .tobytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .tobytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .tobytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .tobytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .fill(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigmaf", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 40, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 45, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 50, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 55, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 60, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 65, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 70, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 75, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 80, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 85, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 90, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 95, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 100, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 105, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 110, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 115, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 120, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 125, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 130, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 135, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 140, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 145, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 150, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 155, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 160, "pattern": "name_call_unresolved", "note": "Call to 'Field(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.bigpsl", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.bigpsl", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .is_integer(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.chain", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Align.clustal", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.emboss", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.exonerate", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.fasta", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.hhr", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 56, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.interfaces", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 61, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.interfaces", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 171, "pattern": "name_call_unresolved", "note": "Call to 'read_header(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.interfaces", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 237, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.interfaces", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 248, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align.interfaces", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.interfaces", "lineno": 328, "pattern": "self_method_not_found", "note": "self.write_alignments(...) not found in class 'AlignmentWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Align.interfaces", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 330, "pattern": "self_method_not_found", "note": "self._close(...) not found in class 'AlignmentIterator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Align.maf", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.maf", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.mauve", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.msf", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .nonzero(...) - target object type not statically resolved." }, { "module": "Bio.Align.nexus", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.phylip", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .min(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.psl", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .issubdtype(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .issubdtype(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 720, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 720, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.sam", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .nonzero(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .tobytes(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access ._store_per_file_annotations(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access ._store_per_column_annotations(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access ._store_per_sequence_annotations(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access ._store_per_sequence_and_per_column_annotations(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access ._format_long_text(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access ._format_long_text(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 520, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access ._format_long_text(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access ._format_record(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .fill(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align.stockholm", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .auto(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .auto(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .auto(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .auto(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Align.tabular", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 31, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 790, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 799, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 885, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 936, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 938, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 945, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 950, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 971, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .parse_printed_alignment(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 979, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 981, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 986, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align", "lineno": 1057, "pattern": "attribute_call", "note": "Call via attribute access .PrintedAlignmentParser(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1060, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1063, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1064, "pattern": "attribute_call", "note": "Call via attribute access .fill(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1179, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1179, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1198, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1214, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1215, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1221, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1226, "pattern": "attribute_call", "note": "Call via attribute access .argmin(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1253, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1253, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1254, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align", "lineno": 1277, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1280, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1292, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1294, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1299, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1301, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1308, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1312, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1325, "pattern": "attribute_call", "note": "Call via attribute access .cast(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1335, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1438, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1443, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1455, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1496, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1498, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1503, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1505, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1511, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1512, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1520, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1537, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1549, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1613, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1629, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1647, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1647, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1672, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1672, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1697, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1697, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1722, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1722, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1742, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1761, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1800, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1802, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1823, "pattern": "attribute_call", "note": "Call via attribute access .cumsum(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1824, "pattern": "attribute_call", "note": "Call via attribute access .searchsorted(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1845, "pattern": "attribute_call", "note": "Call via attribute access .cumsum(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1846, "pattern": "attribute_call", "note": "Call via attribute access .searchsorted(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1847, "pattern": "attribute_call", "note": "Call via attribute access .searchsorted(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1912, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1916, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1921, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1925, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1953, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1989, "pattern": "attribute_call", "note": "Call via attribute access .cumsum(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 1990, "pattern": "attribute_call", "note": "Call via attribute access .searchsorted(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2014, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2015, "pattern": "attribute_call", "note": "Call via attribute access .cumsum(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2016, "pattern": "attribute_call", "note": "Call via attribute access .searchsorted(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2017, "pattern": "attribute_call", "note": "Call via attribute access .searchsorted(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2029, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2040, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2043, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2078, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2085, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2094, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2096, "pattern": "attribute_call", "note": "Call via attribute access .__class__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2098, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2099, "pattern": "attribute_call", "note": "Call via attribute access .__class__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2108, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2111, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2113, "pattern": "attribute_call", "note": "Call via attribute access .__class__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2222, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2223, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2228, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2230, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2240, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2241, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2267, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2281, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2302, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2365, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2386, "pattern": "attribute_call", "note": "Call via attribute access .AlignmentWriter(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2391, "pattern": "attribute_call", "note": "Call via attribute access .format_alignment(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2410, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2416, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2434, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2455, "pattern": "attribute_call", "note": "Call via attribute access .isascii(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2465, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2469, "pattern": "attribute_call", "note": "Call via attribute access .min(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2470, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2471, "pattern": "attribute_call", "note": "Call via attribute access .where(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2473, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2477, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2479, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2481, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2490, "pattern": "attribute_call", "note": "Call via attribute access .min(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2491, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2492, "pattern": "attribute_call", "note": "Call via attribute access .where(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2567, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2567, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2585, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2589, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2591, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2603, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2605, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2611, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2613, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2629, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2650, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2652, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2652, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2665, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2676, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2676, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2716, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2748, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2748, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2765, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2766, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2767, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2933, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2938, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2940, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2944, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 2945, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3077, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3078, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3083, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3085, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3090, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3091, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3092, "pattern": "attribute_call", "note": "Call via attribute access .min(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3093, "pattern": "attribute_call", "note": "Call via attribute access .flatnonzero(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3096, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3096, "pattern": "attribute_call", "note": "Call via attribute access .stack(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3097, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3100, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3102, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3164, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3166, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3170, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3172, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3174, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3247, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3249, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3253, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3255, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3257, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3335, "pattern": "name_call_unresolved", "note": "Call to 'key(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align", "lineno": 3338, "pattern": "attribute_call", "note": "Call via attribute access .take(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3494, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3495, "pattern": "attribute_call", "note": "Call via attribute access .prod(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3495, "pattern": "attribute_call", "note": "Call via attribute access .sign(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3496, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3498, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3502, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3503, "pattern": "attribute_call", "note": "Call via attribute access .prod(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3503, "pattern": "attribute_call", "note": "Call via attribute access .sign(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3504, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3506, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3512, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3515, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3517, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3523, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3524, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3525, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3527, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3528, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3529, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3533, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3540, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3578, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3578, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3590, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3593, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3606, "pattern": "attribute_call", "note": "Call via attribute access .clip(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3606, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3607, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3609, "pattern": "attribute_call", "note": "Call via attribute access .cumsum(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3615, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3631, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3633, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3635, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3643, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3645, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3650, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3730, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3732, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3737, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3739, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3755, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3757, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3758, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3920, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3921, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3922, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3942, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3958, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3962, "pattern": "attribute_call", "note": "Call via attribute access .AlignmentCounts(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3966, "pattern": "attribute_call", "note": "Call via attribute access .AlignmentCounts(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3970, "pattern": "attribute_call", "note": "Call via attribute access .AlignmentCounts(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 3974, "pattern": "attribute_call", "note": "Call via attribute access .AlignmentCounts(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4003, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4017, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4019, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4058, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4074, "pattern": "attribute_call", "note": "Call via attribute access .__len__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4134, "pattern": "attribute_call", "note": "Call via attribute access .reset(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4148, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4155, "pattern": "attribute_call", "note": "Call via attribute access .reset(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4326, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4347, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4398, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4403, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4405, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align", "lineno": 4413, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4421, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4428, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4434, "pattern": "attribute_call", "note": "Call via attribute access .__getattr__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4438, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4446, "pattern": "attribute_call", "note": "Call via attribute access .__getattribute__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4453, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4453, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4455, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4468, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4479, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4479, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4481, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4497, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4502, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4511, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4511, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4513, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4526, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4533, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4533, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4535, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4551, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4554, "pattern": "attribute_call", "note": "Call via attribute access .score(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4597, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4620, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4703, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4712, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4713, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4714, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4722, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4723, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4724, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4729, "pattern": "attribute_call", "note": "Call via attribute access .score(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4780, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4789, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4790, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4791, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4799, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4800, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4801, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4806, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4841, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4848, "pattern": "attribute_call", "note": "Call via attribute access .import_module(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4878, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Align", "lineno": 4878, "pattern": "name_call_unresolved", "note": "Call to 'writer(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Align", "lineno": 4910, "pattern": "attribute_call", "note": "Call via attribute access .AlignmentIterator(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .item(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .view(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .__setitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .__array_prepare__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .__array_wrap__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .view(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .view(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .__array_ufunc__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .view(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .asarray(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .ix_(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .ix_(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 340, "pattern": "self_method_not_found", "note": "self.view(...) not found in class 'Array' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Align.substitution_matrices", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .issubdtype(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .realpath(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Align.substitution_matrices", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.ClustalIO", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.EmbossIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.FastaIO", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.Interfaces", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.Interfaces", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 271, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.AlignIO.MafIO", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .isabs(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .isabs(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .isabs(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 817, "pattern": "name_call_unresolved", "note": "Call to 'append(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.AlignIO.MafIO", "lineno": 820, "pattern": "name_call_unresolved", "note": "Call to 'append(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.AlignIO.MafIO", "lineno": 823, "pattern": "name_call_unresolved", "note": "Call to 'append(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.AlignIO.MafIO", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 828, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MafIO", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MauveIO", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.MsfIO", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.NexusIO", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.NexusIO", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .write_alignment(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.PhylipIO", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 536, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO.StockholmIO", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO", "lineno": 211, "pattern": "name_call_unresolved", "note": "Call to 'writer_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.AlignIO", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.AlignIO", "lineno": 323, "pattern": "name_call_unresolved", "note": "Call to 'iterator_generator(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .add_password(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIWWW", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 514, "pattern": "self_method_not_found", "note": "self._on_root_node(...) not found in class '_XMLparser' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast.NCBIXML", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 566, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 571, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .make_parser(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .setContentHandler(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .setFeature(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .setFeature(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .setFeature(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .setFeature(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 819, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 829, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 966, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 968, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 976, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 977, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1016, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1018, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1169, "pattern": "attribute_call", "note": "Call via attribute access .append_item(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1254, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1269, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1275, "pattern": "attribute_call", "note": "Call via attribute access .ParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1289, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1296, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1300, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1302, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1308, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1311, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1313, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Blast.NCBIXML", "lineno": 1326, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .ParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .SetParamEntityParsing(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .ExternalEntityParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .ParseFile(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .ParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .ParseFile(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .SetParamEntityParsing(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .ParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .ParseFile(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 429, "pattern": "name_call_unresolved", "note": "Call to '_HSP_cache(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast._parser", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 492, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 520, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .unescape(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 682, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 717, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 749, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 951, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 952, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1047, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1076, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1079, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1089, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1178, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1181, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1183, "pattern": "name_call_unresolved", "note": "Call to 'method(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast._parser", "lineno": 1192, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._parser", "lineno": 1195, "pattern": "name_call_unresolved", "note": "Call to 'method(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast._writers", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .register_error(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .escape(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 46, "pattern": "self_method_not_found", "note": "self._write_query_id(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 47, "pattern": "self_method_not_found", "note": "self._write_query_def(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 48, "pattern": "self_method_not_found", "note": "self._write_query_len(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 54, "pattern": "self_method_not_found", "note": "self._write_query_seq(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 62, "pattern": "self_method_not_found", "note": "self._start_mbstat(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 64, "pattern": "self_method_not_found", "note": "self._end_mbstat(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 168, "pattern": "self_method_not_found", "note": "self._start_hit_targets(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 170, "pattern": "self_method_not_found", "note": "self._start_hitdescr(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 180, "pattern": "self_method_not_found", "note": "self._end_hitdescr(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 181, "pattern": "self_method_not_found", "note": "self._end_hit_targets(...) not found in class 'BaseXMLWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Blast._writers", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 648, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 674, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 704, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 709, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 747, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 771, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 781, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 784, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 787, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 792, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 798, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 801, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 804, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 807, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 810, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 816, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 819, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 822, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 828, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 831, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 837, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 840, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 843, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 857, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 860, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 863, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 866, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 869, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 878, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 918, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 921, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 924, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 936, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 944, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 952, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 973, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 979, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 994, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1001, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1004, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1012, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1020, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1028, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1041, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1048, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1055, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1062, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1069, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1077, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1093, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1101, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1117, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1133, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1141, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1149, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1157, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1165, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1181, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1189, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1197, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1205, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1221, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1229, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1237, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1244, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1251, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1259, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1266, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1273, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1280, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1295, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1303, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1311, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1319, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1327, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1335, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1342, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1349, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1356, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1363, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1371, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1379, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1387, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1395, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1403, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1411, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1419, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1427, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1435, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1443, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1451, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1459, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1467, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1475, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1483, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1491, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1499, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1507, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast._writers", "lineno": 1515, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .__str__(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .fill(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .fill(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .wrap(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .wrap(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .diff(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .wrap(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 702, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 703, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .ParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 725, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 774, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .popleft(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 818, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 841, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 862, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 865, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 995, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 998, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast", "lineno": 1002, "pattern": "name_call_unresolved", "note": "Call to 'Writer(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Blast", "lineno": 1004, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1007, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1108, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1123, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1179, "pattern": "attribute_call", "note": "Call via attribute access .add_password(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1187, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1216, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1231, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1236, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1244, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1246, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1252, "pattern": "attribute_call", "note": "Call via attribute access .peek(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1255, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1260, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1262, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1264, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1266, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1282, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1286, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1289, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1293, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1294, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1304, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1306, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1311, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1313, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1314, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1314, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1314, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1318, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1321, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1321, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Blast", "lineno": 1321, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.CAPS", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.CAPS", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 22, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Cluster", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .version(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .kcluster(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .kmedoids(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .treecluster(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .somcluster(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .clusterdistance(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .clustercentroids(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .distancematrix(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .pca(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 714, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .shape(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1029, "pattern": "attribute_call", "note": "Call via attribute access .arange(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1033, "pattern": "attribute_call", "note": "Call via attribute access .arange(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1062, "pattern": "attribute_call", "note": "Call via attribute access .argsort(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1075, "pattern": "attribute_call", "note": "Call via attribute access .argsort(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1087, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1091, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1096, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1097, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1100, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1103, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1110, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1123, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1124, "pattern": "attribute_call", "note": "Call via attribute access .argsort(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1126, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1132, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1144, "pattern": "attribute_call", "note": "Call via attribute access .shape(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1149, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1153, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1157, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1159, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1160, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1161, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1164, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1165, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1167, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1169, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1170, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1172, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1174, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1176, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1177, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1179, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1180, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1183, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1184, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1186, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1188, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1189, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1207, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1209, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1212, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1212, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1219, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1221, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1223, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1228, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1230, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1232, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1242, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1245, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1251, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1253, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1255, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1257, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1264, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1267, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1273, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1275, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1283, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1283, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.Cluster", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .toSeq(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 183, "pattern": "name_call_unresolved", "note": "Call to 'DM(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.codonalign.codonalignment", "lineno": 184, "pattern": "name_call_unresolved", "note": "Call to 'DM(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.codonalign.codonalignment", "lineno": 227, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.codonalign.codonalignment", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonalignment", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 248, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.codonalign.codonseq", "lineno": 250, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.codonalign.codonseq", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .ungap(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 710, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 725, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 914, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1193, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1209, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1210, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1211, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1215, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign.codonseq", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 158, "pattern": "name_call_unresolved", "note": "Call to 'exit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.codonalign", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .end(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 606, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .groupdict(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 648, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 648, "pattern": "attribute_call", "note": "Call via attribute access .span(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 663, "pattern": "attribute_call", "note": "Call via attribute access .end(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 672, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 676, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 685, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 707, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 707, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 709, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 745, "pattern": "attribute_call", "note": "Call via attribute access .get_full_rf_table(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.codonalign", "lineno": 790, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Compass", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 257, "pattern": "name_call_unresolved", "note": "Call to 'TranslationError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Data.CodonTable", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 428, "pattern": "name_call_unresolved", "note": "Call to 'TranslationError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Data.CodonTable", "lineno": 450, "pattern": "name_call_unresolved", "note": "Call to 'TranslationError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Data.CodonTable", "lineno": 474, "pattern": "name_call_unresolved", "note": "Call to 'TranslationError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Data.CodonTable", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 505, "pattern": "name_call_unresolved", "note": "Call to 'NCBICodonTableDNA(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Data.CodonTable", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.CodonTable", "lineno": 556, "pattern": "name_call_unresolved", "note": "Call to 'NCBICodonTableRNA(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Data.IUPACData", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.IUPACData", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Data.IUPACData", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Data.PDBData", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Data.PDBData", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.Primer3", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Emboss.PrimerSearch", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 152, "pattern": "self_method_not_found", "note": "self.append(...) not found in class 'ListElement' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Entrez.Parser", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 226, "pattern": "self_method_not_found", "note": "self.append(...) not found in class 'OrderedListElement' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Entrez.Parser", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .system(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .getenv(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .expanduser(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .makedirs(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .makedirs(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .ParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .SetParamEntityParsing(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 386, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Entrez.Parser", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .ParseFile(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 446, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Entrez.Parser", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .Parse(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 648, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 677, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Entrez.Parser", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 736, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 773, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 787, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 803, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 829, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 842, "pattern": "attribute_call", "note": "Call via attribute access .store(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 851, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 880, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 917, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 927, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1023, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1030, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1042, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1049, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1062, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1066, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1068, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1069, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1075, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1079, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1081, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1082, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1095, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1122, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1124, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1138, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1141, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1152, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1153, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1157, "pattern": "attribute_call", "note": "Call via attribute access .ExternalEntityParserCreate(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1159, "pattern": "attribute_call", "note": "Call via attribute access .ParseFile(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1160, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Entrez.Parser", "lineno": 1162, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .get_content_subtype(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .TextIOWrapper(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Entrez", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.cellosaurus", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Enzyme", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prodoc", "lineno": 171, "pattern": "name_call_unresolved", "note": "Call to 'read_line(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.ExPASy.Prosite", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .groups(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.Prosite", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .setContentHandler(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy.ScanProsite", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.ExPASy", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .TextIOWrapper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Record", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .start_feature_table(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .feature_key(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .location(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .feature_qualifier(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .feature_qualifier(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .sequence(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .record_end(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 641, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 678, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 682, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 691, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 722, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 734, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 736, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 747, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 756, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 758, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 771, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 772, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 774, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 780, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 780, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 781, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 788, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 804, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 808, "pattern": "attribute_call", "note": "Call via attribute access .accession(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 812, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 816, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 818, "pattern": "attribute_call", "note": "Call via attribute access .version_suffix(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 828, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 836, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 837, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 861, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 862, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 870, "pattern": "attribute_call", "note": "Call via attribute access .reference_num(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 885, "pattern": "attribute_call", "note": "Call via attribute access .reference_bases(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 885, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 889, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 893, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 911, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .pubmed_id(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 919, "pattern": "attribute_call", "note": "Call via attribute access .comment(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 928, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 928, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 936, "pattern": "attribute_call", "note": "Call via attribute access .dblink(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 936, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 936, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .authors(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 956, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .project(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .keywords(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 970, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 975, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 981, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 988, "pattern": "attribute_call", "note": "Call via attribute access .contig_location(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1023, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1024, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1026, "pattern": "attribute_call", "note": "Call via attribute access ._feed_first_line(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1041, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1041, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1041, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1053, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1056, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1060, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1062, "pattern": "attribute_call", "note": "Call via attribute access .version_suffix(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1064, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1066, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1067, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1067, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1067, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1069, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1072, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1072, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1073, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1086, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1091, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1092, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1094, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1101, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1105, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1113, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1116, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1129, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1129, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1134, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1135, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1137, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1141, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1146, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1147, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1159, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1192, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1197, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1201, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1202, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1206, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1215, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1220, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1222, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1223, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1227, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1232, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1239, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1242, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1242, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1299, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1311, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1315, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1322, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1330, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1331, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1346, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1350, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1351, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1354, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1356, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1361, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1361, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1362, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1364, "pattern": "attribute_call", "note": "Call via attribute access .date(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1365, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1394, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1408, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1410, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1416, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1417, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1425, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1426, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1426, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1427, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1427, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1437, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1451, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1455, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1462, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1470, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1471, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1481, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1482, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1484, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1486, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1486, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1488, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1488, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1490, "pattern": "attribute_call", "note": "Call via attribute access .molecule_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1490, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1491, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1491, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1492, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1493, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1495, "pattern": "attribute_call", "note": "Call via attribute access .date(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1496, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1496, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1512, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1513, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1513, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1517, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1522, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1523, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1524, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1530, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1531, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1542, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1544, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1545, "pattern": "attribute_call", "note": "Call via attribute access .topology(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1546, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1547, "pattern": "attribute_call", "note": "Call via attribute access .date(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1549, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1556, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1556, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1565, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1566, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1567, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1568, "pattern": "attribute_call", "note": "Call via attribute access .residue_type(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1569, "pattern": "attribute_call", "note": "Call via attribute access .data_file_division(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1570, "pattern": "attribute_call", "note": "Call via attribute access .date(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1571, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1571, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1574, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1578, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1578, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1579, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1579, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1580, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1580, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1584, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1588, "pattern": "attribute_call", "note": "Call via attribute access .locus(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1588, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1588, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1589, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1589, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1631, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1632, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1639, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1641, "pattern": "attribute_call", "note": "Call via attribute access .version(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1646, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1648, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1651, "pattern": "attribute_call", "note": "Call via attribute access .version(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1651, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1652, "pattern": "attribute_call", "note": "Call via attribute access .gi(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1652, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1659, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1665, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1667, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1670, "pattern": "attribute_call", "note": "Call via attribute access .dblink(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1670, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1675, "pattern": "attribute_call", "note": "Call via attribute access .dblink(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1675, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1693, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1710, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1714, "pattern": "attribute_call", "note": "Call via attribute access .reference_num(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1719, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1721, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1724, "pattern": "attribute_call", "note": "Call via attribute access .reference_num(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1724, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1725, "pattern": "attribute_call", "note": "Call via attribute access .reference_bases(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1725, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1743, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1756, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1761, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1766, "pattern": "attribute_call", "note": "Call via attribute access .organism(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1769, "pattern": "attribute_call", "note": "Call via attribute access .taxonomy(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1787, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1789, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1801, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1804, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1810, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1812, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1813, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1817, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1818, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1832, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1841, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1843, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1844, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1856, "pattern": "attribute_call", "note": "Call via attribute access .comment(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1858, "pattern": "attribute_call", "note": "Call via attribute access .structured_comment(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1875, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1890, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1894, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1895, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1899, "pattern": "attribute_call", "note": "Call via attribute access .base_count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1900, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1901, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1905, "pattern": "attribute_call", "note": "Call via attribute access .origin_name(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1906, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1907, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1908, "pattern": "attribute_call", "note": "Call via attribute access .tls(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1909, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1910, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1911, "pattern": "attribute_call", "note": "Call via attribute access .tsa(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1912, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1913, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1914, "pattern": "attribute_call", "note": "Call via attribute access .wgs(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1915, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1916, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1917, "pattern": "attribute_call", "note": "Call via attribute access .add_wgs_scafld(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1918, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1919, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1927, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1928, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1930, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1932, "pattern": "attribute_call", "note": "Call via attribute access .origin_name(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.Scanner", "lineno": 1938, "pattern": "attribute_call", "note": "Call via attribute access .contig_location(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.utils", "lineno": 54, "pattern": "name_call_unresolved", "note": "Call to 'cleaner(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.GenBank.utils", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank.utils", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 348, "pattern": "name_call_unresolved", "note": "Call to 'ParserFailureError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.GenBank", "lineno": 357, "pattern": "name_call_unresolved", "note": "Call to 'ParserFailureError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.GenBank", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .setdefault(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 675, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .clean_value(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 764, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 840, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 857, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 871, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 895, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 901, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 904, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 904, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 939, "pattern": "name_call_unresolved", "note": "Call to 'ParserFailureError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.GenBank", "lineno": 948, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 948, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 949, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 963, "pattern": "name_call_unresolved", "note": "Call to 'ParserFailureError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.GenBank", "lineno": 978, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 990, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1008, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1026, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1045, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1052, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1065, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1091, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1112, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1116, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1152, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1152, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.GenBank", "lineno": 1158, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Geo.Record", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Geo.Record", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 16, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Geo", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 773, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.BasicChromosome", "lineno": 803, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.ColorSpiral", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .random(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.ColorSpiral", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .hsv_to_rgb(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Comparative", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Comparative", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.DisplayRepresentation", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Distribution", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .ceil(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Distribution", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Distribution", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Distribution", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.Distribution", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 25, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .HexColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .HexColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .Canvas(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .setFont(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .saveState(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .scale(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .drawImage(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .restoreState(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .setStrokeColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .beginPath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .setLineWidth(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .setLineWidth(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .moveTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .drawPath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .setLineWidth(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .circle(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .roundRect(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .rect(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .setFont(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .drawCentredString(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .setFont(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .setStrokeColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .setStrokeColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .setStrokeColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .setStrokeColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .setDash(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .setDash(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .beginPath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .moveTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .moveTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .moveTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .moveTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.KGML_vis", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .drawPath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Graphics", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Graphics", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics", "lineno": 86, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Graphics", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .drawToFile(...) - target object type not statically resolved." }, { "module": "Bio.Graphics", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .drawToFile(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._AbstractDrawer", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._AbstractDrawer", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._AbstractDrawer", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._AbstractDrawer", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .range(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .get_drawn_levels(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .get_drawn_levels(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .get_sets(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .get_features(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 342, "pattern": "name_call_unresolved", "note": "Call to 'method(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access ._trackA(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access ._trackB(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .get_drawn_levels(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .get_graphs(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 682, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .linearlyInterpolatedColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 758, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .get_sets(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 856, "pattern": "attribute_call", "note": "Call via attribute access .get_graphs(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 857, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 971, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 980, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1011, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1029, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1130, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1138, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1146, "pattern": "attribute_call", "note": "Call via attribute access .closePath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1175, "pattern": "attribute_call", "note": "Call via attribute access .moveTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1177, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1186, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1189, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1230, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1234, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1239, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1241, "pattern": "attribute_call", "note": "Call via attribute access .closePath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1334, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1344, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1345, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1347, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1356, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1357, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .closePath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1496, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1504, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1513, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1514, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1515, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1531, "pattern": "attribute_call", "note": "Call via attribute access .closePath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1546, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1555, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1566, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1567, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1568, "pattern": "attribute_call", "note": "Call via attribute access .lineTo(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1584, "pattern": "attribute_call", "note": "Call via attribute access .closePath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1681, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1690, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1705, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1714, "pattern": "attribute_call", "note": "Call via attribute access .addArc(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CircularDrawer", "lineno": 1730, "pattern": "attribute_call", "note": "Call via attribute access .closePath(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .toColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Colors", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CrossLink", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .get_sets(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CrossLink", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CrossLink", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .get_sets(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._CrossLink", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .range(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Diagram", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Feature", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Feature", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .artemis_color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Feature", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Feature", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .set_color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._FeatureSet", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Graph", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Graph", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Graph", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Graph", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .range(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._GraphSet", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .get_drawn_levels(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .get_sets(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .get_sets(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .get_graphs(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 566, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .getBounds(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 682, "pattern": "attribute_call", "note": "Call via attribute access .get_features(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 736, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access ._trackA(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access ._trackB(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 820, "pattern": "attribute_call", "note": "Call via attribute access .get_drawn_levels(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 1102, "pattern": "name_call_unresolved", "note": "Call to 'method(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 1186, "pattern": "attribute_call", "note": "Call via attribute access .get_graphs(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 1202, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 1299, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 1323, "pattern": "attribute_call", "note": "Call via attribute access .linearlyInterpolatedColor(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._LinearDrawer", "lineno": 1374, "pattern": "attribute_call", "note": "Call via attribute access .quartiles(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .range(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Graphics.GenomeDiagram._Track", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .TextIOWrapper(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.REST", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.KEGG", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .splitlines(...) - target object type not statically resolved." }, { "module": "Bio.KEGG", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 88, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Compound", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 101, "pattern": "name_call_unresolved", "note": "Call to 'struct_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Compound", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 109, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Compound", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Compound", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 151, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Enzyme", "lineno": 159, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Enzyme", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 167, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Enzyme", "lineno": 175, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Enzyme", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 183, "pattern": "name_call_unresolved", "note": "Call to 'struct_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Enzyme", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Enzyme", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 73, "pattern": "name_call_unresolved", "note": "Call to 'id_wrap(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.KEGG.Gene", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Gene", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .add_entry(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .add_graphics(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .add_component(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .__setattr__(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .add_reaction(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .add_relation(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_parser", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .asctime(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .tostring(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .parseString(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .toprettyxml(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .hexval(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .hexval(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .from_iterable(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 705, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 764, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 767, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 769, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 772, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 847, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.KGML.KGML_pathway", "lineno": 856, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.KEGG.Map", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 167, "pattern": "name_call_unresolved", "note": "Call to 'Record(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Medline", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Medline", "lineno": 194, "pattern": "name_call_unresolved", "note": "Call to 'Record(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Medline", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.alignace", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.motifs.clusterbuster", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .getroot(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.mast", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 100, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'GenericPositionMatrix' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.motifs.matrix", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 313, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'GenericPositionMatrix' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.motifs.matrix", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .calculate(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .arange(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .where(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .calculate(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .where(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .argsort(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 520, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .isinf(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .pow(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .isinf(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .pow(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .dist_pearson_at(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs.matrix", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .getroot(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.meme", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.minimal", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.motifs.pfm", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .min_score(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .max_score(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .ic(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .log_odds(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .pwm(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.motifs.thresholds", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .partition(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .partition(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .partition(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.transfac", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .getAttribute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .getAttribute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .getAttribute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .getAttribute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.xms", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 27, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.motifs", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .log_odds(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .log2(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .log2(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 568, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.motifs", "lineno": 625, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 66, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.motifs.jaspar.db", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 571, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 571, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 676, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 678, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 694, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 694, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 730, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 767, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 769, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar.db", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .__hash__(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.motifs.jaspar", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 373, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 513, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 526, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 556, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 558, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 604, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 679, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 708, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 709, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 709, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 714, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 721, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 742, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 767, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 767, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 771, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 781, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 799, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 805, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 807, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 809, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 815, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 815, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 819, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 889, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 890, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 912, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 921, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 945, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 951, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 957, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 963, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 983, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 996, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 998, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1005, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1014, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1024, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1024, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1054, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1067, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1075, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1076, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1078, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1086, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1093, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1121, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1125, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1138, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1145, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1158, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1167, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1171, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1178, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1179, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1198, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1225, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1230, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1244, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1275, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1280, "pattern": "attribute_call", "note": "Call via attribute access .rest(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .next_word(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1284, "pattern": "attribute_call", "note": "Call via attribute access .next_word(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1286, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1289, "pattern": "attribute_call", "note": "Call via attribute access .next_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1290, "pattern": "attribute_call", "note": "Call via attribute access .next_word(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1291, "pattern": "attribute_call", "note": "Call via attribute access .next_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1292, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1293, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1294, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1295, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1296, "pattern": "attribute_call", "note": "Call via attribute access .next_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1297, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .peek_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1312, "pattern": "attribute_call", "note": "Call via attribute access .next_word(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1316, "pattern": "attribute_call", "note": "Call via attribute access .peek_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1320, "pattern": "attribute_call", "note": "Call via attribute access .next_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1322, "pattern": "attribute_call", "note": "Call via attribute access .next_word(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1326, "pattern": "attribute_call", "note": "Call via attribute access .peek_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1328, "pattern": "attribute_call", "note": "Call via attribute access .next_nonwhitespace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1330, "pattern": "attribute_call", "note": "Call via attribute access .next_word(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1335, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1339, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1340, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1372, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1377, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1384, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1391, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1405, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1412, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1417, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1462, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1467, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1538, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1540, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1540, "pattern": "attribute_call", "note": "Call via attribute access .difference(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1544, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1567, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1569, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1570, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1571, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1572, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1574, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1576, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1578, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1580, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1582, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1584, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1586, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1587, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1595, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1598, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1611, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1614, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1615, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1617, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1623, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1625, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1630, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1630, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1631, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1632, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1636, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1638, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1638, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1641, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1643, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1646, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1654, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1663, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1701, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1705, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1708, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1709, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1733, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1741, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1753, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1757, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1769, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1774, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1774, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1780, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1780, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1785, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1787, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1797, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1797, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1803, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1803, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1807, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1809, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1823, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1823, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1823, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1832, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1838, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1848, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1854, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1858, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1862, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1883, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1884, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1907, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1907, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1908, "pattern": "attribute_call", "note": "Call via attribute access .smprint(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1908, "pattern": "attribute_call", "note": "Call via attribute access .weighting(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1915, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1916, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1916, "pattern": "attribute_call", "note": "Call via attribute access .difference(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1927, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1939, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1944, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1952, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1954, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1962, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 1984, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 1985, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2002, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2016, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 2021, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2026, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2029, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2038, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 2044, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2045, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2053, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2054, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2072, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2074, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2106, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2119, "pattern": "attribute_call", "note": "Call via attribute access .scanfile(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nexus", "lineno": 2122, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nexus", "lineno": 2126, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 50, "pattern": "name_call_unresolved", "note": "Call to 'ChainException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .set_id(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .set_prev(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .add_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 63, "pattern": "name_call_unresolved", "note": "Call to 'ChainException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get_prev(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .remove_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .set_prev(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .add_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 77, "pattern": "name_call_unresolved", "note": "Call to 'ChainException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 84, "pattern": "name_call_unresolved", "note": "Call to 'ChainException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 95, "pattern": "name_call_unresolved", "note": "Call to 'ChainException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 97, "pattern": "name_call_unresolved", "note": "Call to 'ChainException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .set_prev(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .get_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .get_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 117, "pattern": "name_call_unresolved", "note": "Call to 'NodeException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .get_succ(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 138, "pattern": "name_call_unresolved", "note": "Call to 'NodeException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Nodes", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Nodes", "lineno": 167, "pattern": "name_call_unresolved", "note": "Call to 'NodeException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.StandardData", "lineno": 31, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.StandardData", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.StandardData", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.StandardData", "lineno": 69, "pattern": "name_call_unresolved", "note": "Call to 'NexusError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.StandardData", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.StandardData", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.StandardData", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.StandardData", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .escape(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .escape(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 77, "pattern": "name_call_unresolved", "note": "Call to 'data(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 95, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 156, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 158, "pattern": "self_method_not_found", "note": "self.dataclass(...) not found in class 'Tree' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Nexus.Trees", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 203, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 240, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 249, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 255, "pattern": "self_method_not_found", "note": "self.dataclass(...) not found in class 'Tree' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Nexus.Trees", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 284, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 286, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 315, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 392, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .set_subtree(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .get_taxa(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .get_taxa(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 443, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .get_taxa(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .all_ids(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 587, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 589, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .choice(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .gauss(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .shuffle(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 780, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 780, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 795, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 799, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 808, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 811, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 849, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 862, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 865, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 875, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 890, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 894, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 902, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 909, "pattern": "attribute_call", "note": "Call via attribute access .has_support(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .branchlength2support(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 911, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 914, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 929, "pattern": "attribute_call", "note": "Call via attribute access .get_taxa(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .get_taxa(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 933, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 935, "pattern": "attribute_call", "note": "Call via attribute access ._walk(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 936, "pattern": "attribute_call", "note": "Call via attribute access .get_taxa(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 956, "pattern": "name_call_unresolved", "note": "Call to 'dataclass(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Nexus.Trees", "lineno": 965, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 975, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 980, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Nexus.Trees", "lineno": 994, "pattern": "name_call_unresolved", "note": "Call to 'TreeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.NMR.NOEtools", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Bio.NMR.NOEtools", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Bio.NMR.NOEtools", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Bio.NMR.NOEtools", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Bio.NMR.NOEtools", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.NOEtools", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.NOEtools", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.NMR.xpktools", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .species(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .species(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .add_node(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .add_edge(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .parents(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .parent_edges(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .children(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .child_edges(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .nodes(...) - target object type not statically resolved." }, { "module": "Bio.Pathway", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .labels(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.Graph", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .nodes(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .nodes(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .children(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .children(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .nodes(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .nodes(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .children(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Pathway.Rep.MultiGraph", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .children(...) - target object type not statically resolved." }, { "module": "Bio.PDB.AbstractPropertyMap", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.AbstractPropertyMap", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .makedirs(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.alphafold_db", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .capitalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .isalpha(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .capitalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .capitalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .isclose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .isclose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .set_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .asarray(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .average(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .flag_disorder(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 566, "pattern": "attribute_call", "note": "Call via attribute access .set_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 568, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Atom", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 16, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.binary_cif", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .frombuffer(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .divide(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .multiply(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .repeat(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .cumsum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .dtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .issubdtype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .integer_unpack(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .stack(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .init_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.binary_cif", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .tolist(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .tolist(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 77, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.cealign", "lineno": 90, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.cealign", "lineno": 118, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.cealign", "lineno": 123, "pattern": "name_call_unresolved", "note": "Call to 'run_cealign(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.cealign", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.PDB.cealign", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Chain", "lineno": 143, "pattern": "self_method_not_found", "note": "self.get_id(...) not found in class 'Chain' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Chain", "lineno": 155, "pattern": "self_method_not_found", "note": "self.get_list(...) not found in class 'Chain' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Chain", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Chain", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Chain", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Chain", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Dice", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .Popen(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .Popen(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .communicate(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .splitext(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .check_output(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .check_output(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_id_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_id_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.DSSP", "lineno": 548, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Entity", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access ._reset_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 271, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Entity", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .set_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 280, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Entity", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .set_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .popleft(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .asarray(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .asarray(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .average(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .disordered_add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .set_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Entity", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 152, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 206, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 208, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 265, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.FragmentMapper", "lineno": 305, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.HSExposure", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 127, "pattern": "name_call_unresolved", "note": "Call to 'rotaxis(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.HSExposure", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .left_multiply(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.HSExposure", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 108, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 144, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .round(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .round(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .shape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .shape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .size(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 492, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ic_rebuild", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 571, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 588, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 633, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 662, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 663, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 663, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 706, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 707, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .pretty_str(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .pretty_str(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 720, "pattern": "attribute_call", "note": "Call via attribute access .split_akl(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 747, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 756, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 759, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 809, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 810, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access ._build_rak_cache(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 907, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .full(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 931, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 935, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 938, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 940, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 947, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 949, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 950, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 953, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 954, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 956, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 965, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 966, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 990, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 998, "pattern": "attribute_call", "note": "Call via attribute access .full(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1023, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1024, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1028, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1034, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1037, "pattern": "attribute_call", "note": "Call via attribute access .split_akl(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1040, "pattern": "attribute_call", "note": "Call via attribute access ._link_dihedra(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1046, "pattern": "attribute_call", "note": "Call via attribute access .split_akl(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1049, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1061, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1065, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1068, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1071, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1071, "pattern": "attribute_call", "note": "Call via attribute access .disordered_has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1090, "pattern": "attribute_call", "note": "Call via attribute access .flag_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1092, "pattern": "attribute_call", "note": "Call via attribute access .disordered_add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1095, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1095, "pattern": "attribute_call", "note": "Call via attribute access .disordered_has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1096, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1098, "pattern": "attribute_call", "note": "Call via attribute access .set_bfactor(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1099, "pattern": "attribute_call", "note": "Call via attribute access .set_occupancy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1100, "pattern": "attribute_call", "note": "Call via attribute access .get_serial_number(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1108, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1108, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1113, "pattern": "attribute_call", "note": "Call via attribute access .fromiter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1113, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1114, "pattern": "attribute_call", "note": "Call via attribute access .deg2rad(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1115, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1164, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1167, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1171, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .logical_not(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1177, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1182, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1185, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1187, "pattern": "attribute_call", "note": "Call via attribute access .where(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1194, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1197, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1200, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1201, "pattern": "attribute_call", "note": "Call via attribute access .einsum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1215, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1258, "pattern": "attribute_call", "note": "Call via attribute access .assemble(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1260, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1283, "pattern": "attribute_call", "note": "Call via attribute access ._create_edra(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1291, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1292, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1293, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1296, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1300, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1301, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1304, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1319, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1323, "pattern": "attribute_call", "note": "Call via attribute access .logical_not(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1340, "pattern": "attribute_call", "note": "Call via attribute access .any(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1344, "pattern": "attribute_call", "note": "Call via attribute access .deg2rad(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1345, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1346, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1393, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1402, "pattern": "attribute_call", "note": "Call via attribute access .multiply(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1406, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1410, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1442, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1442, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1444, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1467, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1494, "pattern": "attribute_call", "note": "Call via attribute access .logical_not(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1497, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1545, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1589, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1590, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1592, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .pretty_str(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1604, "pattern": "attribute_call", "note": "Call via attribute access .split_akl(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1611, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1639, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1640, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1641, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1642, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1643, "pattern": "attribute_call", "note": "Call via attribute access .rad2deg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1644, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1646, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1647, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1648, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1656, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1664, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1664, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1664, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1666, "pattern": "attribute_call", "note": "Call via attribute access .arctan2(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1667, "pattern": "attribute_call", "note": "Call via attribute access .rad2deg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1678, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1683, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1684, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1685, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1686, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1701, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1710, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1714, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1716, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1721, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1723, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1725, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1726, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1732, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1735, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1738, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1739, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1746, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1747, "pattern": "attribute_call", "note": "Call via attribute access ._write_mtx(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1748, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1756, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1767, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1782, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1803, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1806, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1818, "pattern": "attribute_call", "note": "Call via attribute access .clear_transforms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1823, "pattern": "attribute_call", "note": "Call via attribute access .assemble(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1831, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1835, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1837, "pattern": "attribute_call", "note": "Call via attribute access .is_backbone(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1837, "pattern": "attribute_call", "note": "Call via attribute access .is_backbone(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1841, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1844, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1845, "pattern": "attribute_call", "note": "Call via attribute access ._writeSCAD_dihed(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1847, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1848, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1855, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1856, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1860, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1863, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1864, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1875, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1880, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1882, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1897, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1905, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1908, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1912, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1913, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1952, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1955, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1964, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1965, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1972, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1981, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1990, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1992, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1995, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1996, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1997, "pattern": "attribute_call", "note": "Call via attribute access ._write_mtx(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1998, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 1999, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2037, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2044, "pattern": "attribute_call", "note": "Call via attribute access .sign(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2064, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2128, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2141, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2142, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2159, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2161, "pattern": "attribute_call", "note": "Call via attribute access .rad2deg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2169, "pattern": "attribute_call", "note": "Call via attribute access .rad2deg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2170, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2172, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2173, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2174, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2208, "pattern": "attribute_call", "note": "Call via attribute access .set_angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2209, "pattern": "attribute_call", "note": "Call via attribute access .set_angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2597, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2602, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2613, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2616, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2618, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2656, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2674, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2695, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2698, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2699, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2700, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2717, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2721, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2723, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2733, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2743, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2762, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2775, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2860, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2864, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2868, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2886, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2887, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2917, "pattern": "attribute_call", "note": "Call via attribute access .appendleft(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2936, "pattern": "attribute_call", "note": "Call via attribute access .asarray(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2949, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2967, "pattern": "attribute_call", "note": "Call via attribute access .appendleft(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 2975, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3029, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3033, "pattern": "attribute_call", "note": "Call via attribute access .altloc_match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3039, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3040, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3041, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3121, "pattern": "name_call_unresolved", "note": "Call to 'obj(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 3151, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3151, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3151, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3153, "pattern": "attribute_call", "note": "Call via attribute access .split_akl(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3158, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3161, "pattern": "attribute_call", "note": "Call via attribute access .altloc_match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3162, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3177, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3179, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3199, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3209, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3220, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3223, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3235, "pattern": "attribute_call", "note": "Call via attribute access ._set_hedra(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3250, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3273, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3275, "pattern": "attribute_call", "note": "Call via attribute access ._pdb_atom_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3277, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3278, "pattern": "attribute_call", "note": "Call via attribute access ._pdb_atom_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3332, "pattern": "attribute_call", "note": "Call via attribute access ._pdb_atom_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3345, "pattern": "attribute_call", "note": "Call via attribute access .get_segid(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3346, "pattern": "attribute_call", "note": "Call via attribute access .isspace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3350, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3384, "pattern": "name_call_unresolved", "note": "Call to '_pfDef(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 3410, "pattern": "attribute_call", "note": "Call via attribute access ._asdict(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3417, "pattern": "attribute_call", "note": "Call via attribute access .get_bfactor(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3450, "pattern": "attribute_call", "note": "Call via attribute access ._residue_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3458, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3463, "pattern": "attribute_call", "note": "Call via attribute access ._pdb_atom_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3464, "pattern": "attribute_call", "note": "Call via attribute access ._pdb_atom_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3467, "pattern": "attribute_call", "note": "Call via attribute access ._pdb_atom_string(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3478, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3500, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3505, "pattern": "attribute_call", "note": "Call via attribute access .bits(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3524, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3525, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3529, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3549, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3552, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3554, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3556, "pattern": "name_call_unresolved", "note": "Call to 'AK(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 3556, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3557, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3559, "pattern": "name_call_unresolved", "note": "Call to 'AK(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 3559, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3560, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3561, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3568, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3576, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3578, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3640, "pattern": "attribute_call", "note": "Call via attribute access ._get_angle_for_tuple(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3647, "pattern": "attribute_call", "note": "Call via attribute access ._get_angle_for_tuple(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3653, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3654, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3659, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3661, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3666, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3666, "pattern": "attribute_call", "note": "Call via attribute access .rak(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3668, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3671, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3674, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3675, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3676, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3685, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3734, "pattern": "attribute_call", "note": "Call via attribute access .angle_dif(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3780, "pattern": "attribute_call", "note": "Call via attribute access .angle_dif(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3821, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3823, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3826, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3828, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3841, "pattern": "attribute_call", "note": "Call via attribute access .get_length(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3854, "pattern": "attribute_call", "note": "Call via attribute access .set_length(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3862, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3862, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3866, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3866, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3918, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3953, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3973, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 3984, "pattern": "attribute_call", "note": "Call via attribute access .gen_key(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4010, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4011, "pattern": "attribute_call", "note": "Call via attribute access .cr_class(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4017, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4020, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4022, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4024, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4033, "pattern": "attribute_call", "note": "Call via attribute access .is_backbone(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4144, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4293, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4322, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4325, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4330, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4367, "pattern": "attribute_call", "note": "Call via attribute access ._get_hedron(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4371, "pattern": "attribute_call", "note": "Call via attribute access ._get_hedron(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4377, "pattern": "name_call_unresolved", "note": "Call to 'HedronMatchError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 4381, "pattern": "attribute_call", "note": "Call via attribute access ._get_hedron(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4384, "pattern": "name_call_unresolved", "note": "Call to 'HedronMatchError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 4442, "pattern": "attribute_call", "note": "Call via attribute access .deg2rad(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4462, "pattern": "attribute_call", "note": "Call via attribute access .deg2rad(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .arctan2(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4464, "pattern": "attribute_call", "note": "Call via attribute access .rad2deg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4472, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4472, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4472, "pattern": "attribute_call", "note": "Call via attribute access .square(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4472, "pattern": "attribute_call", "note": "Call via attribute access .angle_dif(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4476, "pattern": "attribute_call", "note": "Call via attribute access .angle_dif(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4496, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4581, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4588, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4597, "pattern": "name_call_unresolved", "note": "Call to '_fieldsDef(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.internal_coords", "lineno": 4626, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4634, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4644, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4647, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4649, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4656, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4656, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4663, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4665, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4674, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4676, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4678, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4680, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4693, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4696, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4698, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4828, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4829, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4839, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4840, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4851, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4851, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4855, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.PDB.internal_coords", "lineno": 4856, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIF2Dict", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .accept_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .accept_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .accept_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .accept_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .get_serial_number(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .get_name(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .get_bfactor(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmcifio", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .filterwarnings(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .set_header(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 180, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .init_seg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .set_line_counter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 259, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 263, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .init_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .set_anisou(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .set_symmetry(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 364, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .filterwarnings(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 496, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .init_seg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .set_line_counter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 555, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 571, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 576, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .init_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.MMCIFParser", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .set_anisou(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Model", "lineno": 44, "pattern": "self_method_not_found", "note": "self.get_id(...) not found in class 'Model' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Model", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Model", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .Popen(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .communicate(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NACCESS", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 51, "pattern": "name_call_unresolved", "note": "Call to 'KDTree(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 91, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .require(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 114, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.NeighborSearch", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .neighbor_search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.parse_pdb_header", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .capitalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .isalpha(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .truncate(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .accept_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .accept_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 413, "pattern": "name_call_unresolved", "note": "Call to 'PDBIOException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PDBIO", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .accept_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 435, "pattern": "name_call_unresolved", "note": "Call to 'PDBIOException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PDBIO", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .accept_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 448, "pattern": "name_call_unresolved", "note": "Call to 'get_atom_line(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PDBIO", "lineno": 465, "pattern": "name_call_unresolved", "note": "Call to 'PDBIOException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PDBIO", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBIO", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .closing(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .closing(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .closing(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .access(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .makedirs(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .retrieve_assembly_file(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .makedirs(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .move(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .partial(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .access(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .makedirs(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .submit(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .partial(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .partial(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 672, "pattern": "attribute_call", "note": "Call via attribute access .partial(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBList", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .set_header(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .init_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBMLParser", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .filterwarnings(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .set_header(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .set_line_counter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .set_line_counter(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 205, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PDBParser", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .init_seg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .init_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .set_anisou(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .set_siguij(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .set_sigatm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PDBParser", "lineno": 412, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PICIO", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .split_akl(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access ._hedraDict2chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 708, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 709, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 737, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 749, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .groups(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 770, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 830, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 845, "pattern": "attribute_call", "note": "Call via attribute access .today(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .strftime(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 848, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 858, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 859, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 879, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access ._write_PIC(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 887, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 892, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 893, "pattern": "attribute_call", "note": "Call via attribute access .get_serial_number(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 897, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 900, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 901, "pattern": "attribute_call", "note": "Call via attribute access .set_serial_number(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 904, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .set_serial_number(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 911, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 912, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 924, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 940, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1043, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.PICIO", "lineno": 1045, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1046, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1092, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1093, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1094, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1096, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1097, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1098, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1101, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1103, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1103, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PICIO", "lineno": 1115, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .get_vector(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .get_level(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 352, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 358, "pattern": "name_call_unresolved", "note": "Call to 'accept(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 366, "pattern": "name_call_unresolved", "note": "Call to 'accept(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 367, "pattern": "name_call_unresolved", "note": "Call to 'accept(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 368, "pattern": "name_call_unresolved", "note": "Call to 'is_connected(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 444, "pattern": "name_call_unresolved", "note": "Call to 'test_dist(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Polypeptide", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Polypeptide", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .splitext(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryDirectory(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .rename(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.PSEA", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .trace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .trace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .flatten(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .eye(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 283, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 309, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 311, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 316, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 335, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 338, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 346, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 352, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.qcprot", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.qcprot", "lineno": 362, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Residue", "lineno": 46, "pattern": "self_method_not_found", "note": "self.get_id(...) not found in class 'Residue' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Residue", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 81, "pattern": "self_method_not_found", "note": "self.has_id(...) not found in class 'Residue' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Residue", "lineno": 82, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Residue", "lineno": 101, "pattern": "self_method_not_found", "note": "self.get_list(...) not found in class 'Residue' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Residue", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 133, "pattern": "self_method_not_found", "note": "self.get_resname(...) not found in class 'DisorderedResidue' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Residue", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 150, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Residue", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .set_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Residue", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .detach_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.ResidueDepth", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .defaultdict(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 198, "pattern": "name_call_unresolved", "note": "Call to 'KDTree(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.SASA", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .max(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 217, "pattern": "name_call_unresolved", "note": "Call to 'KDTree(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.SASA", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SASA", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .applyMtx(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 170, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.SCADIO", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access ._write_SCAD(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access ._write_SCAD(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.SCADIO", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Selection", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Selection", "lineno": 53, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Selection", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .get_level(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Selection", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .get_level(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Selection", "lineno": 61, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Selection", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .from_iterable(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Selection", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Structure", "lineno": 28, "pattern": "self_method_not_found", "note": "self.get_id(...) not found in class 'Structure' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.PDB.Structure", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Structure", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureAlignment", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureAlignment", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureAlignment", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureAlignment", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureAlignment", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .get_altloc(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .disordered_has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .disordered_add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 174, "pattern": "name_call_unresolved", "note": "Call to 'PDBConstructionException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .get_fullname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .has_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .disordered_add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .flag_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .flag_disordered(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .set_anisou(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .set_siguij(...) - target object type not statically resolved." }, { "module": "Bio.PDB.StructureBuilder", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .set_sigatm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 35, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Superimposer", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 51, "pattern": "name_call_unresolved", "note": "Call to 'PDBException(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.Superimposer", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Bio.PDB.Superimposer", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .trace(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .normalized(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .normalized(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .normalized(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .normalized(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .angle(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .det(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .det(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .det(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .arctan2(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 637, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 654, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 678, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 685, "pattern": "attribute_call", "note": "Call via attribute access .norm(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .arctan2(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .arccos(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .divide(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 697, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 697, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .reshape(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 704, "pattern": "attribute_call", "note": "Call via attribute access .arctan2(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 714, "pattern": "attribute_call", "note": "Call via attribute access .matmul(...) - target object type not statically resolved." }, { "module": "Bio.PDB.vectors", "lineno": 730, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB", "lineno": 30, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .init_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .init_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .init_seg(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .init_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .init_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.DefaultParser", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .set_symmetry(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .product(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .init_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .set_xtal_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .set_header_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .set_bio_assembly_trans(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .get_models(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .accept_model(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .set_model_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .accept_chain(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .accept_residue(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .set_entity_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .set_chain_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .set_group_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .accept_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .accept_atom(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .set_atom_info(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .finalize_structure(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf.mmtfio", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf", "lineno": 15, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.PDB.mmtf", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .pass_data_on(...) - target object type not statically resolved." }, { "module": "Bio.PDB.mmtf", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .interp(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 720, "pattern": "attribute_call", "note": "Call via attribute access .arange(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 734, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 734, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 794, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 831, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 835, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 843, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 938, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 938, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 946, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 959, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 963, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 968, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1013, "pattern": "attribute_call", "note": "Call via attribute access .reader(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1018, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1033, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1034, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1039, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1039, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1042, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1047, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1060, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1065, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1077, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1080, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1082, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1087, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1090, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1092, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1095, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1097, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1100, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1102, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1105, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1110, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1112, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1115, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1117, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1126, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1161, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1168, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1171, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1174, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1175, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1177, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1180, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1201, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.phen_micro", "lineno": 1201, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 30, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .exp(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .exp(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .exp(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .exp(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .exp(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .std(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .std(...) - target object type not statically resolved." }, { "module": "Bio.phenotype.pm_fitting", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .std(...) - target object type not statically resolved." }, { "module": "Bio.phenotype", "lineno": 92, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.phenotype", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.phenotype", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.phenotype", "lineno": 137, "pattern": "name_call_unresolved", "note": "Call to 'writer_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.phenotype", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .deque(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .popleft(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 29, "pattern": "name_call_unresolved", "note": "Call to 'get_children(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 37, "pattern": "name_call_unresolved", "note": "Call to 'get_children(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 47, "pattern": "name_call_unresolved", "note": "Call to 'get_children(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 149, "pattern": "name_call_unresolved", "note": "Call to 'matcher_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 200, "pattern": "name_call_unresolved", "note": "Call to 'match_obj(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 200, "pattern": "name_call_unresolved", "note": "Call to 'match_kwargs(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .chain(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 293, "pattern": "name_call_unresolved", "note": "Call to 'order_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 391, "pattern": "name_call_unresolved", "note": "Call to 'match(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .get_path(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .get_path(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 479, "pattern": "name_call_unresolved", "note": "Call to 'depth_of(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .count_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .ladderize(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 697, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 715, "pattern": "name_call_unresolved", "note": "Call to 'clade_cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 753, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 774, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .choice(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .gauss(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 787, "pattern": "attribute_call", "note": "Call via attribute access .shuffle(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 841, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .__class__(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 856, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 856, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 861, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 873, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 873, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 892, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 897, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 914, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1009, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1101, "pattern": "attribute_call", "note": "Call via attribute access .from_name(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1102, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1104, "pattern": "attribute_call", "note": "Call via attribute access .from_hex(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1183, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1187, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.BaseTree", "lineno": 1192, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 41, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 45, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 110, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .Graph(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .n3(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .URIRef(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .URIRef(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .Literal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .Literal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .Literal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .URIRef(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.CDAOIO", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .zfill(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 194, "pattern": "self_method_not_found", "note": "self.count(...) not found in class '_BitString' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Phylo.Consensus", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 206, "pattern": "self_method_not_found", "note": "self.count(...) not found in class '_BitString' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Phylo.Consensus", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .contains(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 220, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.Consensus", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .chain(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .index_one(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .contains(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .chain(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .index_one(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .iscompatible(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .contains(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .contains(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .independent(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .index_one(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .contains(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .contains(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 413, "pattern": "attribute_call", "note": "Call via attribute access .independent(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .independent(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .index_one(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .count_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .build_tree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .build_tree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 613, "pattern": "name_call_unresolved", "note": "Call to 'consensus(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.Consensus", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .from_bool(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.Consensus", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 110, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NewickIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .finditer(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 183, "pattern": "name_call_unresolved", "note": "Call to 'NewickError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NewickIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 207, "pattern": "name_call_unresolved", "note": "Call to 'NewickError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NewickIO", "lineno": 214, "pattern": "name_call_unresolved", "note": "Call to 'NewickError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NewickIO", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .end(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .ladderize(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NewickIO", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXML", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 40, "pattern": "name_call_unresolved", "note": "Call to 'register_namespace(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 105, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access ._make_tree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .SubElement(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .SubElement(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .SubElement(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .SubElement(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .tostring(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .parseString(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .toprettyxml(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .toprettyxml(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .SubElement(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 311, "pattern": "name_call_unresolved", "note": "Call to 'convert_uri(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 321, "pattern": "name_call_unresolved", "note": "Call to 'convert_uri(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .SubElement(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NeXMLIO", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NexusIO", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NexusIO", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NexusIO", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NexusIO", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NexusIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.NexusIO", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 38, "pattern": "name_call_unresolved", "note": "Call to 'testfunc(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 219, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .from_clade(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .to_phylogeny(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .from_clade(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .to_seqrecord(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .to_seqrecord(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 420, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .from_clade(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 787, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 855, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1032, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1054, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1099, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1146, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1159, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1162, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1169, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1171, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1177, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1184, "pattern": "attribute_call", "note": "Call via attribute access .from_seqfeature(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1223, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1238, "pattern": "attribute_call", "note": "Call via attribute access .to_seqfeature(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXML", "lineno": 1367, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 33, "pattern": "name_call_unresolved", "note": "Call to 'register_namespace(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .to_phylogeny(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .from_tree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .from_tree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .Tree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .to_phyloxml(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .Phyloxml(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 146, "pattern": "name_call_unresolved", "note": "Call to 'construct(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 156, "pattern": "name_call_unresolved", "note": "Call to 'construct(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 164, "pattern": "name_call_unresolved", "note": "Call to 'construct(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 172, "pattern": "name_call_unresolved", "note": "Call to 'construct(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .Phyloxml(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .Phylogeny(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 357, "pattern": "name_call_unresolved", "note": "Call to 'PhyloXMLError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .Clade(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 411, "pattern": "name_call_unresolved", "note": "Call to 'PhyloXMLError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .Id(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 427, "pattern": "name_call_unresolved", "note": "Call to 'PhyloXMLError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .Sequence(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .Taxonomy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .Other(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .Accession(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .Annotation(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .BinaryCharacters(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .CladeRelation(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .BranchColor(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .Confidence(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .Date(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .Distribution(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .ProteinDomain(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 566, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 568, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .DomainArchitecture(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .Events(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .Id(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .MolSeq(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .Point(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .Polygon(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .Property(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 623, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .Reference(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .SequenceRelation(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 633, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .Uri(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 678, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 702, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .ElementTree(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .getroot(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 722, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .getroot(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 731, "pattern": "self_method_not_found", "note": "self.phylogeny(...) not found in class 'Writer' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 794, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 804, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 804, "pattern": "self_method_not_found", "note": "self.bc(...) not found in class 'Writer' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 805, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .Element(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 828, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PhyloXMLIO", "lineno": 830, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .expandtabs(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .__setitem__(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .chain(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .combinations(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .get_distance(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 745, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 803, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 860, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 865, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .get_score(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 942, "pattern": "attribute_call", "note": "Call via attribute access .get_score(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .get_path(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 968, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 985, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 990, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 991, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 998, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1013, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1014, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1015, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1020, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1028, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1034, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1035, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1036, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1041, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1042, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1043, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1048, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1049, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1086, "pattern": "attribute_call", "note": "Call via attribute access .root_at_midpoint(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1089, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1090, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1118, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1136, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1140, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.TreeConstruction", "lineno": 1283, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 2879, "pattern": "attribute_call", "note": "Call via attribute access .fromstring(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 2881, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 2882, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._cdao_owl", "lineno": 2885, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 31, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo._utils", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .add_edge(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .to_hex(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .to_hex(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .add_edge(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .add_edge(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .add_node(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .DiGraph(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .Graph(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .add_node(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 106, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo._utils", "lineno": 111, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo._utils", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .Graph(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .Graph(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .ceil(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 354, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo._utils", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 407, "pattern": "name_call_unresolved", "note": "Call to 'label_colors(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo._utils", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .count_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .figure(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .add_subplot(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .hlines(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .set_solid_capstyle(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .set_solid_joinstyle(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .LineCollection(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .vlines(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .set_solid_capstyle(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .set_solid_joinstyle(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .LineCollection(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .to_hex(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 538, "pattern": "name_call_unresolved", "note": "Call to 'label_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo._utils", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .text(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .text(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .add_collection(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .add_collection(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .set_title(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .set_xlabel(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .set_ylabel(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .set_xlim(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .set_ylim(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo._utils", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .show(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .partition(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .partition(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.baseml", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.codeml", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML.yn00", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .mkdir(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._paml", "lineno": 125, "pattern": "name_call_unresolved", "note": "Call to 'PamlError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 12, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_baseml", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 12, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_codeml", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Phylo.PAML._parse_yn00", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .get_individual(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .skip_population(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .get_individual(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .get_individual(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .get_individual(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .get_individual(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.FileParser", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .get_individual(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop.LargeFileParser", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.PopGen.GenePop", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 256, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 258, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 260, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 380, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 381, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 382, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 383, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 388, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 389, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 390, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 391, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 392, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 398, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 408, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 414, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 416, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 417, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 418, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 419, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 422, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 424, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 425, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 426, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 427, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 428, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 430, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 431, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 432, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 433, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 436, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 446, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 473, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .finditer(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 482, "pattern": "name_call_unresolved", "note": "Call to 'Join(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.PrintFormat", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 201, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'FormattedSeq' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Restriction.Restriction", "lineno": 207, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'FormattedSeq' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Restriction.Restriction", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .finditer(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 244, "pattern": "self_method_not_found", "note": "self.klass(...) not found in class 'FormattedSeq' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Restriction.Restriction", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 245, "pattern": "self_method_not_found", "note": "self.klass(...) not found in class 'FormattedSeq' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Restriction.Restriction", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .add_nocheck(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access ._mod1(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 536, "pattern": "attribute_call", "note": "Call via attribute access ._search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access ._search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .finditer(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 975, "pattern": "attribute_call", "note": "Call via attribute access ._modify(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 977, "pattern": "attribute_call", "note": "Call via attribute access ._drop(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1003, "pattern": "attribute_call", "note": "Call via attribute access .finditer(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1011, "pattern": "name_call_unresolved", "note": "Call to 'group(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 1012, "pattern": "name_call_unresolved", "note": "Call to 'modif(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 1014, "pattern": "name_call_unresolved", "note": "Call to 'revmodif(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 1018, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access ._drop(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1142, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1148, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1238, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1272, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1278, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1368, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1380, "pattern": "attribute_call", "note": "Call via attribute access ._mod2(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1405, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1411, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1501, "pattern": "attribute_call", "note": "Call via attribute access .is_3overhang(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1516, "pattern": "attribute_call", "note": "Call via attribute access ._mod2(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1603, "pattern": "attribute_call", "note": "Call via attribute access .cut_twice(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1605, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1612, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1635, "pattern": "attribute_call", "note": "Call via attribute access ._mod2(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1720, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1720, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1723, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1723, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1724, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1753, "pattern": "attribute_call", "note": "Call via attribute access .cut_twice(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1755, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1770, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1815, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1818, "pattern": "attribute_call", "note": "Call via attribute access ._drop(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1930, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1995, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 1996, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2003, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2005, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2006, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2006, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2019, "pattern": "attribute_call", "note": "Call via attribute access .__contains__(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2080, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2106, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'RestrictionBatch' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.Restriction.Restriction", "lineno": 2107, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2118, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2127, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2131, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2167, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2204, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2210, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2210, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2210, "pattern": "attribute_call", "note": "Call via attribute access .suppl_codes(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2211, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2233, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2240, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2251, "pattern": "name_call_unresolved", "note": "Call to 'DNA(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 2269, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2289, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2357, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2366, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2390, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2390, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2396, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2396, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2402, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2402, "pattern": "attribute_call", "note": "Call via attribute access .is_3overhang(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2408, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2408, "pattern": "attribute_call", "note": "Call via attribute access .is_defined(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2414, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2420, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2426, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2432, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2438, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2441, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2448, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2449, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2457, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2462, "pattern": "name_call_unresolved", "note": "Call to 'test(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 2479, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2481, "pattern": "name_call_unresolved", "note": "Call to 'test(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 2497, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2502, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2516, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2521, "pattern": "name_call_unresolved", "note": "Call to 'test(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 2538, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2540, "pattern": "name_call_unresolved", "note": "Call to 'test(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 2552, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2580, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2603, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2610, "pattern": "name_call_unresolved", "note": "Call to 'T(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Restriction.Restriction", "lineno": 2616, "pattern": "attribute_call", "note": "Call via attribute access .is_comm(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2624, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.Restriction.Restriction", "lineno": 2629, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Cla", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Des", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Des", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Des", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Des", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Dom", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Dom", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Dom", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Dom", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Dom", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Hie", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Hie", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Hie", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Hie", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Hie", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Hie", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .__getitem__(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Raf", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 11, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 12, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .groups(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP.Residues", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .getDescendents(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .toHieRecord(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .toDesRecord(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .toClaRecord(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 373, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .getChildren(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .toClaRecord(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 520, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .getNodeBySunid(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .getNodeBySunid(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .getDescendentsFromSQL(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .getChildren(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .getAscendentFromSQL(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .getParent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .getParent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .toDesRecord(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .getParent(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 826, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 829, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .getDomainBySid(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 841, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 842, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 843, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .getDomainBySid(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 855, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 887, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 889, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 890, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 893, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 902, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SCOP", "lineno": 908, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 216, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 362, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 376, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 413, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 533, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 540, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .absorb(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 571, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlatIO", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 164, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 165, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 166, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 364, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 427, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 438, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 450, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 451, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 461, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 462, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 497, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.FastaIO", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._index", "lineno": 31, "pattern": "self_method_not_found", "note": "self._parser(...) not found in class 'SearchIndexer' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._index", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._utils", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._utils", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._utils", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._utils", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO", "lineno": 310, "pattern": "name_call_unresolved", "note": "Call to 'iterator(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO", "lineno": 419, "pattern": "name_call_unresolved", "note": "Call to 'key_function(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO", "lineno": 493, "pattern": "name_call_unresolved", "note": "Call to 'proxy_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO", "lineno": 619, "pattern": "name_call_unresolved", "note": "Call to 'writer_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 235, "pattern": "name_call_unresolved", "note": "Call to 'iterfunc(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 270, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 354, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 431, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 454, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 462, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 474, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 559, "pattern": "name_call_unresolved", "note": "Call to 'iterfunc(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 628, "pattern": "name_call_unresolved", "note": "Call to 'getfunc(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 633, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 769, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 780, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 782, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 845, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 861, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_tab", "lineno": 888, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 260, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 274, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 363, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 391, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 439, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 451, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 498, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 507, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 511, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 541, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .findtext(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 547, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 566, "pattern": "self_method_not_found", "note": "self._parser(...) not found in class 'BlastXmlIndexer' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 588, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 623, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 631, "pattern": "self_method_not_found", "note": "self._parser(...) not found in class 'BlastXmlIndexer' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 671, "pattern": "self_method_not_found", "note": "self._write(...) not found in class '_BlastXmlGenerator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 690, "pattern": "self_method_not_found", "note": "self.ignorableWhitespace(...) not found in class '_BlastXmlGenerator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 691, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 696, "pattern": "self_method_not_found", "note": "self._write(...) not found in class '_BlastXmlGenerator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 711, "pattern": "self_method_not_found", "note": "self._write(...) not found in class '_BlastXmlGenerator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 720, "pattern": "self_method_not_found", "note": "self.ignorableWhitespace(...) not found in class '_BlastXmlGenerator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 745, "pattern": "self_method_not_found", "note": "self._write(...) not found in class '_BlastXmlGenerator' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 770, "pattern": "attribute_call", "note": "Call via attribute access .startDocument(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 771, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 774, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .endParents(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .endDocument(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 822, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .endParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 838, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 838, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .endParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 870, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .endParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 877, "pattern": "attribute_call", "note": "Call via attribute access .startParents(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 879, "pattern": "attribute_call", "note": "Call via attribute access .endParents(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .endParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 892, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 904, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .endParents(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 922, "pattern": "attribute_call", "note": "Call via attribute access .startParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .simpleElement(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.BlastIO.blast_xml", "lineno": 937, "pattern": "attribute_call", "note": "Call via attribute access .endParent(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_cigar", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 302, "pattern": "name_call_unresolved", "note": "Call to 'func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 306, "pattern": "name_call_unresolved", "note": "Call to 'func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 492, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_text", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO.exonerate_vulgar", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 252, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 289, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 382, "pattern": "name_call_unresolved", "note": "Call to 'bool_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 503, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 510, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .absorb(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.ExonerateIO._base", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 65, "pattern": "name_call_unresolved", "note": "Call to 'bool_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 203, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 212, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 224, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HHsuiteIO.hhsuite2_text", "lineno": 233, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 26, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 115, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 205, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 218, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .createHit(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer2_text", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 136, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 139, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 147, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 155, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_domtab", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 118, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 121, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 126, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 133, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_tab", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 54, "pattern": "name_call_unresolved", "note": "Call to 'bool_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 146, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 256, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 274, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 300, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO.hmmer3_text", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 15, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.HmmerIO._base", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 312, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 379, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 382, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 390, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_tab", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 75, "pattern": "name_call_unresolved", "note": "Call to 'bool_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 169, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 299, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 337, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 342, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .end(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .finditer(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 399, "pattern": "name_call_unresolved", "note": "Call to 'op(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 400, "pattern": "name_call_unresolved", "note": "Call to 'op(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 425, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO.infernal_text", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO._base", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO._base", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InfernalIO._base", "lineno": 35, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InfernalIO._base", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 90, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 120, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 125, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 142, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 151, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 157, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 162, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 168, "pattern": "name_call_unresolved", "note": "Call to 'caster(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO.InterproscanIO.interproscan_xml", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 247, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'Hit' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.hit", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 394, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'Hit' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.hit", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 418, "pattern": "name_call_unresolved", "note": "Call to 'func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO._model.hit", "lineno": 422, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'Hit' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.hit", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hit", "lineno": 455, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'Hit' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access ._str_aln(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 369, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'HSP' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 520, "pattern": "name_call_unresolved", "note": "Call to 'startfunc(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 521, "pattern": "name_call_unresolved", "note": "Call to 'endfunc(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 800, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'HSPFragment' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 851, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.hsp", "lineno": 1124, "pattern": "name_call_unresolved", "note": "Call to 'op(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO._model.query", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 240, "pattern": "self_method_not_found", "note": "self._hit_key_function(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 310, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 460, "pattern": "self_method_not_found", "note": "self._hit_key_function(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 514, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 568, "pattern": "name_call_unresolved", "note": "Call to 'func(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SearchIO._model.query", "lineno": 569, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .filter(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 582, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 593, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SearchIO._model.query", "lineno": 717, "pattern": "self_method_not_found", "note": "self._hit_key_function(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model.query", "lineno": 720, "pattern": "self_method_not_found", "note": "self.__class__(...) not found in class 'QueryResult' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SearchIO._model._base", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .getdefaultencoding(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .date(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AbiIO", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AceIO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.AceIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 556, "pattern": "self_method_not_found", "note": "self.record2title(...) not found in class 'FastaWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.FastaIO", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GckIO", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .hexdigest(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .sha256(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .fullmatch(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.GfaIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.IgIO", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .parse_records(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .parse_records(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .parse_records(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .parse_cds_features(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .parse_cds_features(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 786, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 792, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 805, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 805, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 807, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 827, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 854, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 861, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 874, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 888, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 889, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 889, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 890, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 890, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 900, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 922, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 980, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 981, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 986, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 995, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1023, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1029, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1031, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1031, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1035, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1036, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1044, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1044, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1044, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1047, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1052, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1056, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1105, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1113, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1115, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1140, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1142, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1164, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1169, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1205, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1209, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1212, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1215, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1215, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1216, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1216, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1217, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1217, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1218, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1218, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1220, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1225, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1228, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1234, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1235, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1239, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1243, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1248, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1249, "pattern": "attribute_call", "note": "Call via attribute access .ljust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1251, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1251, "pattern": "attribute_call", "note": "Call via attribute access .rjust(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1252, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1258, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1259, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1269, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1269, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1270, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1272, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1291, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1302, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1303, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1332, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1334, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1402, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1434, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1445, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1455, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1483, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1485, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1487, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1489, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1498, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1507, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1511, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1519, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1523, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1526, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1542, "pattern": "attribute_call", "note": "Call via attribute access .parse_records(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.InsdcIO", "lineno": 1549, "pattern": "attribute_call", "note": "Call via attribute access .parse_records(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 87, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 93, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 202, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 205, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 217, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.Interfaces", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .hex(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .hexlify(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .fromhex(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.NibIO", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .unhexlify(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .defaultdict(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .defaultdict(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .defaultdict(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .defaultdict(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PdbIO", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PhdIO", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 239, "pattern": "self_method_not_found", "note": "self.record2title(...) not found in class 'PirWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqIO.PirIO", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.PirIO", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 669, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 678, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 682, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 720, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 819, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 829, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 935, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 937, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 946, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 953, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1029, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1037, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1042, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1049, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1057, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1082, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1089, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1094, "pattern": "attribute_call", "note": "Call via attribute access .isascii(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1110, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1116, "pattern": "attribute_call", "note": "Call via attribute access .tolist(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1116, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1231, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1396, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1456, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1524, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1540, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1541, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1548, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1548, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1554, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1639, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1654, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1668, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1721, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1735, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1760, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1768, "pattern": "self_method_not_found", "note": "self.record2title(...) not found in class 'QualPhredWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1772, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1779, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1794, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1797, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1802, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1803, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1811, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1814, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1815, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1820, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1834, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1906, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1917, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1922, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1936, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1985, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 1995, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2000, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2014, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2139, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2141, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2148, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2167, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2169, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2176, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2177, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2178, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2194, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2214, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2234, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2252, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2272, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2297, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2320, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2345, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2366, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2389, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2392, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2410, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2410, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2429, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2441, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2446, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2449, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2453, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2455, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2512, "pattern": "attribute_call", "note": "Call via attribute access .hex(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2512, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.QualityIO", "lineno": 2517, "pattern": "name_call_unresolved", "note": "Call to 'predicate(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .make_parser(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .setContentHandler(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .setFeature(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .getContentHandler(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .feed(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .startDocument(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .write_records(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 607, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .endDocument(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .characters(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .characters(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 685, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 701, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 702, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 706, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 710, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 722, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .startElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SeqXmlIO", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .endElement(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 312, "pattern": "name_call_unresolved", "note": "Call to 'StreamModeError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.SffIO", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 366, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 701, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 705, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 706, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 734, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 764, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 848, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 870, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 908, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 908, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 925, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 926, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 927, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 927, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 938, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 967, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 991, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .unpack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1005, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1045, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1051, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1056, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1075, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1081, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1086, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1098, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1119, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1138, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1165, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1186, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1187, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1199, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1200, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1203, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1214, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1217, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1226, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1230, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1231, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1234, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1261, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1261, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1270, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1273, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1280, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1282, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1295, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1297, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1320, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1323, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1324, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1326, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1343, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1351, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1353, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1367, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1368, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1404, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1412, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1420, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1420, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1437, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1440, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1441, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1444, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1461, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1464, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1465, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1467, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SffIO", "lineno": 1473, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .strptime(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .hasAttribute(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .hasAttribute(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .hasAttribute(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .hasAttribute(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .getElementsByTagName(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SnapGeneIO", "lineno": 352, "pattern": "name_call_unresolved", "note": "Call to 'handler(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.SwissIO", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SwissIO", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SwissIO", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SwissIO", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SwissIO", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.SwissIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TabIO", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .to_string(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 80, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .fromfile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .convert(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .fromfile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .fromfile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .fromfile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .fromfile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .from_bytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.TwoBitIO", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .iterparse(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .clear(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .iter(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .tostring(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 373, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .UncertainPosition(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .setdefault(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.UniprotIO", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .groups(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO.XdnaIO", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 53, "pattern": "self_method_not_found", "note": "self._iterator(...) not found in class 'SeqFileRandomAccess' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqIO._index", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .calcsize(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 536, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 568, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 668, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 678, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO._index", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 501, "pattern": "name_call_unresolved", "note": "Call to 'alignment_iterator_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 541, "pattern": "name_call_unresolved", "note": "Call to 'alignment_writer_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 605, "pattern": "name_call_unresolved", "note": "Call to 'writer_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 671, "pattern": "name_call_unresolved", "note": "Call to 'iterator_generator(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO", "lineno": 796, "pattern": "name_call_unresolved", "note": "Call to 'key_function(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 937, "pattern": "name_call_unresolved", "note": "Call to 'proxy_class(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqIO", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Bio.SeqIO", "lineno": 1153, "pattern": "name_call_unresolved", "note": "Call to 'f(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.Sequencing.Ace", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Ace", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.Sequencing.Phd", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .crc32(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .sha1(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .encodebytes(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .digest(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.CheckSum", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.IsoelectricPoint", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.IsoelectricPoint", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .count_amino_acids(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.IsoelectricPoint", "lineno": 88, "pattern": "name_call_unresolved", "note": "Call to '_PA(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SeqUtils.IsoelectricPoint", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.IsoelectricPoint", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.lcc", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .log10(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .log10(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .log10(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .log10(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 568, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 571, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 931, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 955, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 955, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 971, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 971, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1012, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1015, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.MeltingTemp", "lineno": 1063, "pattern": "attribute_call", "note": "Call via attribute access .log(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils.ProtParam", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .Scrollbar(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .Scrollbar(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .Canvas(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .winfo_toplevel(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .geometry(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .create_text(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .create_text(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .create_text(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .create_text(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .create_oval(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .create_line(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .create_line(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .bbox(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 566, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 572, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 608, "pattern": "self_method_not_found", "note": "self.update(...) not found in class 'CodonAdaptationIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqUtils", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 648, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SeqUtils", "lineno": 723, "pattern": "self_method_not_found", "note": "self.items(...) not found in class 'CodonAdaptationIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Bio.SeqUtils", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SVDSuperimposer", "lineno": 24, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt.KeyWList", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .TextIOWrapper(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 582, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 589, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 668, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 685, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 749, "pattern": "name_call_unresolved", "note": "Call to 'FeatureTable(...)' not found in local, imported, or builtin symbols." }, { "module": "Bio.SwissProt", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 758, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 764, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 788, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 794, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 798, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 799, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 819, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 827, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.SwissProt", "lineno": 840, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Bio.TogoWS", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .TextIOWrapper(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.UniGene", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Bio.UniProt.GOA", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .match(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Bio.UniProt", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .urlencode(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .indices(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .get_subseq_as_string(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .get_subseq_as_string(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get_subseq_as_string(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .execute_one(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeq", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .execute_one(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 76, "pattern": "name_call_unresolved", "note": "Call to 'connect(...)' not found in local, imported, or builtin symbols." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 78, "pattern": "name_call_unresolved", "note": "Call to 'connect(...)' not found in local, imported, or builtin symbols." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 149, "pattern": "name_call_unresolved", "note": "Call to 'Adapt(...)' not found in local, imported, or builtin symbols." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .list_biodatabase_names(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .fetch_dbid_by_dbname(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .rollback(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .cursor(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .autocommit(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .rollback(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .execute_one(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .fetch_dbid_by_dbname(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .fetch_seqid_by_display_id(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .fetch_seqid_by_accession(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 654, "pattern": "attribute_call", "note": "Call via attribute access .fetch_seqid_by_version(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .fetch_seqids_by_accession(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 694, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 709, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .list_bioentry_ids(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 748, "pattern": "name_call_unresolved", "note": "Call to 'lookup_func(...)' not found in local, imported, or builtin symbols." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 780, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 798, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "BioSQL.BioSeqDatabase", "lineno": 799, "pattern": "attribute_call", "note": "Call via attribute access .IntegrityError(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .insert_id(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .set_isolation_level(...) - target object type not statically resolved." }, { "module": "BioSQL.DBUtils", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .set_isolation_level(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .execute_one(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .execute_one(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .executemany(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .execute_one(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 667, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 691, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 691, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 701, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 736, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 754, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 786, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 804, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 820, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 827, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 837, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 838, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 859, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 874, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 918, "pattern": "attribute_call", "note": "Call via attribute access .last_id(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 946, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1014, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1069, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1136, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1155, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1189, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1195, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1196, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1197, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1217, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetch_col0(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1234, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1258, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "BioSQL.Loader", "lineno": 1260, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 355, "pattern": "name_call_unresolved", "note": "Call to 'apidoc_main(...)' not found in local, imported, or builtin symbols." }, { "module": "Doc.conf", "lineno": 356, "pattern": "name_call_unresolved", "note": "Call to 'apidoc_main(...)' not found in local, imported, or builtin symbols." }, { "module": "Doc.conf", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .rmtree(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Doc.conf", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .add_css_file(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 45, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Doc.examples.ACT_example", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .Color(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 108, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Doc.examples.ACT_example", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Doc.examples.ACT_example", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.clustal_run", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Doc.examples.clustal_run", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .calculate_consensus(...) - target object type not statically resolved." }, { "module": "Doc.examples.fasta_dictionary", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.examples.fasta_iterator", "lineno": 16, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.examples.fasta_iterator", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .Diagram(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .linearlyInterpolatedColor(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 202, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.Proux_et_al_2002_Figure_6", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.www_blast", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Doc.examples.www_blast", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Doc.examples.www_blast", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Doc.examples.nmr.simplepredict", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.examples.nmr.simplepredict", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Doc.examples.nmr.simplepredict", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .getopt(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.query_pubmed", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 74, "pattern": "name_call_unresolved", "note": "Call to '_urlretrieve(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.scop_pdb", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .getopt(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 114, "pattern": "name_call_unresolved", "note": "Call to '_urlretrieve(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.scop_pdb", "lineno": 117, "pattern": "name_call_unresolved", "note": "Call to '_urlretrieve(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.scop_pdb", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .getAtoms(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.scop_pdb", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.update_ncbi_codon_table", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.GenBank.check_output_simple", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .getsize(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .warn(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .getfile(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .currentframe(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.generate_three_to_one_dict", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .ArgumentParser(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .add_argument(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .parse_args(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 66, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 82, "pattern": "name_call_unresolved", "note": "Call to 'HSExposureCA(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 88, "pattern": "name_call_unresolved", "note": "Call to 'HSExposureCB(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 95, "pattern": "name_call_unresolved", "note": "Call to 'ExposureCN(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 98, "pattern": "name_call_unresolved", "note": "Call to 'HSExposureCA(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 102, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 106, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 109, "pattern": "name_call_unresolved", "note": "Call to 'ResidueDepth(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 113, "pattern": "name_call_unresolved", "note": "Call to 'ResidueDepth(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .get_iterator(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .set_bfactor(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 146, "pattern": "name_call_unresolved", "note": "Call to 'PDBIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.PDB.hsexpo", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Scripts.PDB.hsexpo", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_load", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .remove_database(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_load", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_load", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_load", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_load", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_read", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_read", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_read", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_read", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_read", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Scripts.Performance.biosql_performance_read", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .removeprefix(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .__new__(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 401, "pattern": "name_call_unresolved", "note": "Call to 'klass(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .gmtime(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .buildtype(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 536, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 588, "pattern": "attribute_call", "note": "Call via attribute access .copyfile(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 588, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 597, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .copyfile(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .copyfile(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 633, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 654, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 705, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 747, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 919, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 922, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 924, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 940, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 946, "pattern": "attribute_call", "note": "Call via attribute access .dropwhile(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 946, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 954, "pattern": "name_call_unresolved", "note": "Call to 'take(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 954, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 967, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 970, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 970, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 988, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 988, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 991, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 996, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1016, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1016, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1045, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1045, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1051, "pattern": "attribute_call", "note": "Call via attribute access .OptionParser(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1054, "pattern": "name_call_unresolved", "note": "Call to 'add(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1064, "pattern": "attribute_call", "note": "Call via attribute access .parse_args(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.ranacompiler", "lineno": 1076, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.rebase_update", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .strftime(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.rebase_update", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .today(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.rebase_update", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.rebase_update", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.rebase_update", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.Restriction.rebase_update", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .Tk(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .add_separator(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .Scrollbar(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .Listbox(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .selection_set(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .StringVar(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .Radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .Radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .Radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .invoke(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .Scrollbar(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .Text(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .Scrollbar(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .Text(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .StringVar(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .Sizegrip(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .curselection(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.SeqGui.SeqGui", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .mainloop(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .getopt(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.nextorf", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbbtools", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .Tk(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbbtools", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbbtools", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbbtools", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .mainloop(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .Toplevel(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .askdirectory(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .showerror(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .destroy(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .splitext(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .splitext(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .askdirectory(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .call(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .showerror(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .destroy(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .lift(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .StringVar(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .Combobox(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .current(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .Combobox(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .LabelFrame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .Entry(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .destroy(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .BlastDisplayer(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .RunCommand(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .Tk(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blast", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .mainloop(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 62, "pattern": "name_call_unresolved", "note": "Call to 'NcbiblastnCommandline(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 64, "pattern": "name_call_unresolved", "note": "Call to 'NcbiblastpCommandline(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 66, "pattern": "name_call_unresolved", "note": "Call to 'NcbiblastxCommandline(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 68, "pattern": "name_call_unresolved", "note": "Call to 'NcbitblastnCommandline(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 70, "pattern": "name_call_unresolved", "note": "Call to 'NcbitblastxCommandline(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .set_parameter(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .showerror(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .destroy(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 132, "pattern": "self_method_not_found", "note": "self.com(...) not found in class 'BlastWorker' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .showwarning(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .title(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_blastbg", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .mainloop(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .ScrolledText(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .tag_configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_help", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .compile(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .Entry(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 126, "pattern": "name_call_unresolved", "note": "Call to 'x(...)' not found in local, imported, or builtin symbols." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .askcolor(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .tag_config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .see(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 184, "pattern": "self_method_not_found", "note": "self.destroy(...) not found in class 'XDNAsearch' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .Tk(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .xbb_widget(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .insert_sequence(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_search", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .mainloop(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .strftime(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .localtime(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_translations", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .add_separator(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 32, "pattern": "self_method_not_found", "note": "self.configure(...) not found in class 'NotePad' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .Scrollbar(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .Text(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .asksaveasfilename(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_utils", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .option_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .add_separator(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .IntVar(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .StringVar(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .add_radiobutton(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .Menu(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .add_command(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .add_cascade(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .config(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .destroy(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .Button(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .Frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .Label(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .Entry(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .Text(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .bind(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .selection_own(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .selection_get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .selection_get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .selection_own(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .askopenfilename(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .configure(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .text_id(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .text_id(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .gcframe(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .text_id(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .frame_nice(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .frame(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .text_id(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .text_id(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .strftime(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .localtime(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .selection_own(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .tag_ranges(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .selection_own(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .tag_ranges(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .selection_own(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .tag_ranges(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .sub(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .antiparallel(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .tag_remove(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .print_exc(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .delete(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .focus(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .mark_set(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .focus(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .mark_set(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 523, "pattern": "attribute_call", "note": "Call via attribute access .tag_add(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .Tk(...) - target object type not statically resolved." }, { "module": "Scripts.xbbtools.xbb_widget", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .mainloop(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .system(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 47, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.common_BioSQL", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .ConfigParser(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 87, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.common_BioSQL", "lineno": 100, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.common_BioSQL", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 113, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.common_BioSQL", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 120, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.common_BioSQL", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .autocommit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .sleep(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .load_database_sql(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .remove_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 885, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 902, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 945, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 955, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 966, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 971, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 979, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1000, "pattern": "attribute_call", "note": "Call via attribute access .rollback(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1001, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1012, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1026, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1029, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1047, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1068, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1118, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1119, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1121, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1123, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1125, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'ClosedLoopTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1130, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1139, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'ClosedLoopTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1141, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1142, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1156, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1158, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1171, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1195, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1203, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1204, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1206, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1208, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1210, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TransferTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1214, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1217, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1219, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TransferTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1221, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1231, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1231, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1240, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1248, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1250, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1252, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1257, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1257, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1261, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1268, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1279, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1286, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1295, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1329, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1335, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1363, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1364, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1371, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1379, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1390, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1392, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1397, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1398, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'AutoSeqIOTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1399, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1400, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'AutoSeqIOTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1403, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1403, "pattern": "attribute_call", "note": "Call via attribute access .isdigit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1403, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1405, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1406, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'AutoSeqIOTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1414, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1415, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'AutoSeqIOTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1421, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1422, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'AutoSeqIOTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.common_BioSQL", "lineno": 1464, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1467, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1474, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1476, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1501, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1504, "pattern": "attribute_call", "note": "Call via attribute access .rollback(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1505, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1514, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1516, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1539, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1549, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1594, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1594, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1600, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1600, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1601, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1601, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1602, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1602, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1604, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1604, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1608, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1608, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1609, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1609, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1611, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1611, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1613, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1613, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1616, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1616, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1617, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1617, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1619, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1619, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1626, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1626, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1628, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1628, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1636, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1637, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1638, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1639, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1643, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1644, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1645, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1646, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1650, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1650, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1651, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1651, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1654, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1654, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1655, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1655, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1656, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1656, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1659, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1659, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1662, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1662, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1665, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1665, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1668, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1668, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1671, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1671, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1675, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1675, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1679, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL", "lineno": 1679, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .system(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .remove_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .execute_and_fetchall(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.common_BioSQL_online", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .alignment_function(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .localxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .globalmx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .globalmx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .localxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .localxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .localds(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .localds(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .localxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .localms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .localds(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .localxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .globalxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .localms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .localms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .globalms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .globalms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .globalms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .globalms(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .localxd(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .localxd(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .localxd(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .localds(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .localds(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .localds(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .localxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .localxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 759, "pattern": "attribute_call", "note": "Call via attribute access .globalxs(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 798, "pattern": "attribute_call", "note": "Call via attribute access .globalmc(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .globalmc(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 866, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 866, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 887, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .localxx(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 906, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.pairwise2_testCases", "lineno": 917, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.requires_internet", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .getaddrinfo(...) - target object type not statically resolved." }, { "module": "Tests.requires_internet", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.run_tests", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .getopt(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .difference_update(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .__init__(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 230, "pattern": "self_method_not_found", "note": "self._makeResult(...) not found in class 'TestRunner' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.run_tests", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .TestLoader(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .loadTestsFromName(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .countTestCases(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .printErrors(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .DocTestSuite(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .wasSuccessful(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .printErrors(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .wasSuccessful(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .printErrors(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .format_exc(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .collect(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .time(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.run_tests", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 112, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'CheckIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.search_tests_common", "lineno": 121, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'CheckIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.search_tests_common", "lineno": 131, "pattern": "self_method_not_found", "note": "self.assertNotEqual(...) not found in class 'CheckIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.search_tests_common", "lineno": 137, "pattern": "self_method_not_found", "note": "self.assertNotEqual(...) not found in class 'CheckIndex' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.search_tests_common", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .symmetric_difference(...) - target object type not statically resolved." }, { "module": "Tests.search_tests_common", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .difference(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .difference(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .difference(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .difference(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.seq_tests_common", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Ace", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Ace", "lineno": 1210, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Ace", "lineno": 1602, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Ace", "lineno": 2178, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Ace", "lineno": 2179, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Affy", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .assert_allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .assert_allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .assert_allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .assert_allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .assert_allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .assert_allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 320, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .pack(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Affy", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .calculate_consensus(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 871, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .calculate_consensus(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 979, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 1053, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 1055, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_align", "lineno": 1112, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 691, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 798, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 799, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 867, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 895, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 919, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 947, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 961, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 985, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 999, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1007, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1094, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1108, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1122, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1136, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1160, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1171, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1182, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1193, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1255, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1264, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1284, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1289, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1294, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1315, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1320, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1325, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1340, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1349, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1365, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1380, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1389, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1398, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1404, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1406, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1415, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO", "lineno": 1416, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_ClustalIO", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_convert", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_EmbossIO", "lineno": 15, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_EmbossIO", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_EmbossIO", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_EmbossIO", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_EmbossIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_EmbossIO", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 746, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 774, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 794, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 841, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 857, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 865, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_FastaIO", "lineno": 876, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .realpath(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_MauveIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_AlignIO_PhylipIO", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 633, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 793, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 838, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_a2m", "lineno": 906, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_Alignment", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 624, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 663, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 669, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 675, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 771, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 793, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 809, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 827, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 835, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 867, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 869, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 885, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 893, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 907, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 947, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 949, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 956, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 959, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 982, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 998, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1000, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1006, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1008, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1014, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1017, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1038, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1040, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1054, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1056, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1062, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1064, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1073, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1096, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1098, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1112, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1114, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1122, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1128, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1131, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1152, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1154, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1168, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1170, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1176, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1178, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1187, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1255, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1258, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1261, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1284, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1301, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1320, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1390, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 1444, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2125, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2166, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2199, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2238, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2263, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2288, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2313, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2354, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2374, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2462, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2474, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2482, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2565, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2571, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2577, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2585, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2605, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2620, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2643, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2659, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2669, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2675, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2681, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2690, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2696, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2706, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2804, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2815, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2822, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2836, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2837, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2838, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2846, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2849, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2857, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2860, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2874, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2877, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2883, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2886, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2914, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2927, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2944, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2947, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2954, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2957, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2966, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2969, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2975, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 2978, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3063, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3066, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3079, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3082, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3098, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3101, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3109, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3112, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3117, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3119, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3124, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3127, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3135, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3138, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3143, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3145, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3150, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3153, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3162, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3165, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3170, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3173, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3178, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3180, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3287, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3306, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3328, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3359, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3371, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3402, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3417, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3435, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3453, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3476, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3488, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3502, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3519, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3534, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3552, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3570, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3605, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3607, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3611, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3613, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3614, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3623, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3643, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3647, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3671, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_Alignment", "lineno": 3672, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 868, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 931, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1317, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1389, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1394, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1395, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1396, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1416, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1419, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1438, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1499, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1502, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1521, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1582, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1585, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1604, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1665, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1668, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1687, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1748, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1751, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1770, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1831, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1834, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1853, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1914, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1917, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1936, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 1997, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2000, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2027, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2088, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2091, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2110, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2171, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2174, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2193, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2254, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2257, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2276, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2337, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2340, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2359, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2420, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2423, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2442, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2503, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2506, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2525, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2586, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2589, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2608, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2669, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2672, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2691, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2752, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2755, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2774, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2835, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2838, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2857, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2918, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2921, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 2940, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3001, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3004, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3023, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3084, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3087, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3106, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3167, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3170, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3189, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3245, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3250, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3251, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3252, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3270, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3273, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3292, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3353, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3356, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3375, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3436, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3439, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3458, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3514, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3519, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3520, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3521, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3539, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3542, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3561, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3622, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3625, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3644, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3705, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3708, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3727, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3788, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3791, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3810, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3871, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3874, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3901, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3962, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3965, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 3984, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4045, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4048, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4067, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4128, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4131, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4150, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4211, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4214, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4233, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4294, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4297, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4316, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4377, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4380, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4399, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4460, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4482, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4543, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4546, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4565, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4629, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4648, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4709, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4712, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4731, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4795, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4814, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4875, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4878, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4897, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4958, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4961, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 4980, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5041, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5044, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5063, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5119, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5124, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5125, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5126, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5144, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5147, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5166, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5227, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5230, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5249, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5310, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5332, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5393, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5396, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5415, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5476, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5479, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5498, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5559, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5562, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5581, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5642, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5645, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5664, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5725, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5728, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5755, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5816, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5819, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5838, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5899, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5902, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5921, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5982, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 5985, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6004, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6065, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6068, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6087, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6148, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6151, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6170, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6234, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6253, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6314, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6317, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6336, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6397, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6400, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6419, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6480, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6483, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6502, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6563, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6566, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6585, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6646, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6649, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6668, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6729, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6732, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6751, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6812, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6815, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6834, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6895, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6898, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6917, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6973, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6978, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6979, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6980, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 6999, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7002, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7029, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7089, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7092, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7119, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7179, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 7182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8365, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8425, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8428, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8515, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8575, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8578, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8601, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8661, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8664, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8683, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8743, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8746, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8769, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8829, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 8832, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9227, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9283, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9288, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9289, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9290, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9307, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 9310, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11459, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11519, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11522, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11589, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11649, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11652, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11711, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11767, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11772, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11773, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11774, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11783, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11805, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11808, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11816, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11818, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11843, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11843, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11845, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11969, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11972, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11980, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11982, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11988, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 11990, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12015, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12015, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12017, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12120, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12122, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12127, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12128, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12129, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12137, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12168, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12203, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12203, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12205, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12264, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12264, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12266, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12325, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12325, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12327, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12386, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12386, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12388, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12449, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12449, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12451, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12510, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12510, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12512, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12571, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12571, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12573, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12634, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12634, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12636, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12697, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12699, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12705, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bed", "lineno": 12706, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 23, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_bigbed", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 590, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 725, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 794, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 863, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 866, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 871, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 935, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 940, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1001, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1004, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1009, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1070, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1073, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1078, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1139, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1142, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1147, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1208, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1211, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1216, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1277, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1280, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1285, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1346, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1349, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1354, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1415, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1418, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1423, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1484, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1487, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1492, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1553, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1556, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1561, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1622, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1625, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1630, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1691, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1694, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1699, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1760, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1763, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1768, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1829, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1832, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1837, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1898, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1901, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1906, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1967, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1970, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 1975, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2037, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2039, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2040, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2085, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2093, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2154, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2157, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2162, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2223, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2226, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2231, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2293, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2295, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2296, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2355, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2358, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2363, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2424, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2427, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2432, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2493, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2496, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2501, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2562, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2565, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2570, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2634, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2639, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2700, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2703, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2708, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2777, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2838, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2841, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2846, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2907, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2910, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2915, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2976, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2979, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 2984, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3045, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3048, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3053, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3114, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3117, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3122, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3183, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3186, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3191, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3252, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3255, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3260, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3321, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3324, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3329, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3390, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3393, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3398, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3459, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3462, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3467, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3528, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3531, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3536, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3597, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3600, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3605, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3667, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3669, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3670, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3729, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3732, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3737, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3798, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3801, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3806, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3867, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3870, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3875, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3936, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3939, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 3944, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4005, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4008, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4013, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4074, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4077, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4082, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4143, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4146, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4151, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4212, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4215, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4220, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4281, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4284, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4289, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4350, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4353, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4358, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4419, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4422, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4427, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4488, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4491, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4496, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4557, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4560, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4565, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4629, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4634, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4695, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4698, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4703, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4764, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4767, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4772, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4833, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4836, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4841, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4902, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4905, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4910, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4971, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4974, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 4979, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5040, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5043, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5048, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5109, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5112, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5117, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5178, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5181, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5186, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5248, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5250, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5251, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5302, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5305, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5310, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5370, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5373, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5378, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5438, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5441, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5446, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5506, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5509, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5514, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5574, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5577, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5582, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5642, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5645, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5650, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5710, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5713, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5718, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5778, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5781, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5786, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5846, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5848, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 5849, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6032, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6035, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6043, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6045, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6084, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6087, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6095, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6097, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6103, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6105, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6123, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6133, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6135, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6137, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6138, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6213, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6213, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6217, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6281, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6282, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6287, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6351, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6352, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6357, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6421, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6422, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6427, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6491, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6497, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6561, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6562, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6567, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6637, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6701, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6702, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6707, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6771, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6777, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6841, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6842, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6847, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6903, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6906, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6908, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6917, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6918, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6919, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6923, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6933, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6934, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6935, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6985, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6985, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 6987, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7046, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7046, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7048, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7107, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7107, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7109, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7168, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7168, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7170, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7231, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7233, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7292, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7292, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7294, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7353, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7353, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7355, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7416, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7416, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7418, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7479, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7481, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7482, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7503, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7509, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7512, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7515, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7518, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7521, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7524, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7527, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7533, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7540, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7541, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7580, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7581, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7623, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7627, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7635, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7636, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7644, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7649, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7657, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7658, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7667, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7672, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7681, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7682, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7691, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7696, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7705, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7706, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7715, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7720, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7729, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7730, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7739, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7744, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7753, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7754, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7763, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7768, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7777, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7778, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7787, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7792, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7801, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7802, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7811, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7816, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7825, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7826, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7841, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7845, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7853, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7854, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7861, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7865, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7873, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7874, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7881, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7885, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7893, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7894, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7901, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7905, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7913, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7914, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7598, "pattern": "attribute_call", "note": "Call via attribute access .skipUnless(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7922, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 7924, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 8014, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigbed", "lineno": 8015, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 734, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 773, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 930, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 967, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1122, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1140, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1141, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1143, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1196, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1384, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1386, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1423, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1628, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1663, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1880, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1882, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 1938, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2053, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2053, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2056, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2057, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2059, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2079, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2229, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2231, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2243, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2244, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2246, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2301, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2444, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2444, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2446, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2606, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2608, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2627, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2629, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2652, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2831, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2833, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2847, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2848, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2850, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 2878, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3019, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3021, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3033, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3034, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3036, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3051, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3168, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3168, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3171, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3172, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3174, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3179, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3404, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3406, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3441, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3442, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3444, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3493, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3771, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3773, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 3860, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4057, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4059, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4088, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4089, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4091, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4136, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4347, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4347, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4349, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4502, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4504, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4515, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4516, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4518, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4543, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4684, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4684, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4687, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4688, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4690, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4726, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4889, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4891, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4903, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4904, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4906, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 4933, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5090, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5092, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5106, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5107, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5109, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5142, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5325, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5327, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5350, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5351, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5353, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5400, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5531, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5531, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5534, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5535, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5537, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5553, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5712, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5714, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5728, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5729, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5731, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5768, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5923, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5937, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5938, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5940, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 5963, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6106, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6106, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6109, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6110, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6112, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6142, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6297, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6299, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6311, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6312, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6314, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6337, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6506, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6508, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6522, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6523, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6525, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6550, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6740, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6756, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6757, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6759, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6786, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6981, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 6983, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7006, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7007, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7009, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7057, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7198, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7198, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7201, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7204, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7215, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7372, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7375, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7382, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7383, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7400, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7612, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7614, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7636, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7637, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7639, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7677, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7960, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 7962, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8039, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8208, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8208, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8211, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8212, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8214, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8276, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8444, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8446, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8462, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8463, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8465, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8484, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8633, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8633, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8636, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8637, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8639, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8655, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8902, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8904, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8940, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8942, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 8954, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9180, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9197, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9198, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9200, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9231, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9512, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9514, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9544, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9545, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9547, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9616, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9855, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9857, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9889, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9890, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9892, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 9931, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10246, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10248, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10308, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10309, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10311, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10392, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10696, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10698, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10734, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10735, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10737, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 10797, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11146, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11148, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11200, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11561, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11563, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11615, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11946, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 11948, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12011, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12221, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12223, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12245, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12246, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12248, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12280, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12454, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12456, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12476, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12477, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12479, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12506, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12565, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12608, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12609, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12611, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12625, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12826, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12894, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigmaf", "lineno": 12895, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 23, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_bigpsl", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 602, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 842, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 847, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 918, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 921, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 926, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1000, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1005, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1076, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1079, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1084, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1155, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1158, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1163, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1234, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1237, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1242, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1313, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1316, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1321, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1392, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1395, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1400, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1471, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1474, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1479, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1550, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1553, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1558, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1629, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1637, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1708, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1711, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1716, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1787, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1790, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1795, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1866, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1869, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1874, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1945, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1948, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 1953, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2024, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2027, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2032, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2103, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2106, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2111, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2182, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2185, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2190, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2261, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2264, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2269, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2335, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2337, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2338, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2373, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2376, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2381, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2452, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2455, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2460, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2531, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2534, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2539, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2604, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2606, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2607, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2656, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2659, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2664, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2735, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2738, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2743, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2814, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2822, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2893, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2896, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2901, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2972, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2975, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 2980, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3051, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3054, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3059, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3130, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3133, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3138, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3209, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3212, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3217, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3288, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3296, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3367, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3370, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3375, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3446, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3449, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3454, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3525, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3528, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3533, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3604, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3607, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3612, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3683, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3686, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3691, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3762, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3765, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3770, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3841, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3844, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3849, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3920, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3923, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3928, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 3999, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4002, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4007, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4078, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4081, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4086, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4152, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4154, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4155, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4204, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4207, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4212, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4283, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4286, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4291, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4362, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4365, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4370, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4441, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4444, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4449, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4520, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4523, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4528, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4599, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4602, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4607, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4678, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4681, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4686, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4757, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4760, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4765, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4836, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4839, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4844, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4915, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4918, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4923, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4994, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 4997, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5002, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5073, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5076, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5081, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5152, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5155, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5160, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5234, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5239, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5310, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5318, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5389, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5392, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5397, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5468, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5471, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5476, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5547, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5550, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5555, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5629, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5634, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5705, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5708, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5713, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5784, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5787, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5792, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5863, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5866, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5871, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5944, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5946, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5947, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5979, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5982, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 5987, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6057, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6060, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6065, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6135, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6138, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6143, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6213, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6221, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6291, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6294, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6299, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6369, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6372, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6377, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6447, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6450, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6455, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6525, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6528, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6533, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6612, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6615, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6620, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6701, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6765, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6766, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6779, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6781, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6782, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6803, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6805, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6806, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6835, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6838, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6843, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6904, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6907, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6912, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6973, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6976, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 6983, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7044, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7047, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7052, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7113, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7116, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7121, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7182, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7185, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7190, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7251, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7254, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7259, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7320, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7323, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7328, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7382, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7392, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7453, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7456, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7461, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7515, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7517, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7571, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7571, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7573, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7627, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7627, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7629, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7683, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7683, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7685, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7739, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7747, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7801, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7801, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7803, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7857, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7857, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7859, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7913, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7913, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7915, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7969, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7969, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 7971, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8025, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8025, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8027, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8081, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8081, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8083, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8137, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8137, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8139, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8193, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8193, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8195, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8249, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8249, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8251, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8305, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8308, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8319, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8373, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8376, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8387, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8441, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8444, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8455, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8532, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8535, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8546, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8600, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8603, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8614, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8668, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8671, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8680, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8754, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8757, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8768, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8829, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8832, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8837, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8891, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8894, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8907, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8968, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8971, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 8980, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9034, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9046, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9100, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9103, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9116, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9170, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9173, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9182, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9236, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9239, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9252, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9313, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9316, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9327, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9381, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9381, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9383, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9437, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9437, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9439, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9493, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9493, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9495, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9549, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9549, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9551, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9605, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9605, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9607, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9661, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9661, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9663, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9724, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9727, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9738, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9792, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9794, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9848, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9848, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9850, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9904, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9904, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9906, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9960, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9960, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 9962, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10016, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10018, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10021, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10075, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10077, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10080, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10134, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10134, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10136, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10190, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10190, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10192, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10246, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10246, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10248, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10302, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10302, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10304, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10358, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10358, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10360, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10414, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10414, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10416, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10470, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10470, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10472, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10526, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10526, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10528, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10582, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10582, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10584, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10638, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10638, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10640, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10694, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10694, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10696, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10750, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10750, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10752, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10806, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10808, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10811, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10865, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10865, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10867, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10921, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10921, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10923, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10977, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10977, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 10979, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11033, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11033, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11035, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11089, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11089, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11091, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11145, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11145, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11147, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11201, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11201, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11203, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11257, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11257, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11259, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11313, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11315, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11369, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11369, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11371, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11425, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11425, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11427, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11481, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11481, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11483, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11537, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11537, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11539, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11593, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11593, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11595, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11649, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11649, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11651, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11705, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11705, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11707, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11761, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11761, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11763, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11817, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11819, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11873, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11873, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11875, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11929, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11929, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11931, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11985, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11985, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 11987, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12041, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12041, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12043, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12097, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12100, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12109, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12163, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12163, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12165, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12219, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12219, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12221, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12275, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12275, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12277, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12331, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12331, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12333, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12387, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12387, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12389, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12443, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12443, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12445, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12499, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12499, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12501, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12555, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12555, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12557, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12611, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12611, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12613, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12667, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12667, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12669, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12723, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12723, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12725, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12779, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12779, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12781, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12859, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12866, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12869, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12872, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12875, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12878, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12881, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12884, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12891, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12899, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12900, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12935, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_bigpsl", "lineno": 12936, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 25, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_chain", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 975, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 978, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 990, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1386, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1456, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1458, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1459, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1470, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1509, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1512, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1525, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1609, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1677, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1680, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1693, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1761, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1764, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1777, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1845, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1848, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1861, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1929, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1932, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 1945, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2013, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2016, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2030, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2106, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2109, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2123, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2191, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2194, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2207, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2275, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2278, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2291, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2363, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2366, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2380, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2448, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2451, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2464, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2532, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2535, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2548, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2616, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2619, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2630, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2698, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2701, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2714, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2782, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2785, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2798, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2866, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2869, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2882, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2950, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2953, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 2966, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3034, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3050, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3118, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3121, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3134, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3202, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3218, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3286, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3289, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3302, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3358, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3363, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3382, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3414, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3417, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3430, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3498, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3501, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3514, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3582, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3585, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3598, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3657, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3705, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3773, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3776, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3789, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3857, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3860, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3873, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3941, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3944, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 3958, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4034, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4051, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4119, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4122, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4135, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4203, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4206, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4219, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4291, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4294, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4308, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4376, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4379, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4392, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4460, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4463, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4476, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4544, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4547, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4561, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4629, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4645, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4713, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4716, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4729, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4797, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4800, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4813, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4881, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4884, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4897, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4965, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4968, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 4981, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5049, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5052, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5065, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5133, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5136, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5149, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5217, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5220, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5233, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5289, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5294, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5326, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5329, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5342, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5410, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5413, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5426, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5494, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5497, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5510, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5578, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5581, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5594, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5662, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5665, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5678, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5746, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5749, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5762, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5830, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5833, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5847, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5923, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5926, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 5940, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6008, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6011, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6024, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6092, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6095, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6108, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6180, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6183, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6197, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6265, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6268, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6281, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6349, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6352, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6365, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6433, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6436, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6450, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6518, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6521, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6534, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6602, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6605, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6618, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6686, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6689, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6702, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6770, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6773, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6786, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6854, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6857, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6870, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6938, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6941, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 6954, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7022, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7025, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7038, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7106, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7109, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7122, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7181, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7190, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7256, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7280, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_chain", "lineno": 7281, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 704, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 770, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 808, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 873, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 874, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 876, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 1016, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 1081, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_clustal", "lineno": 1082, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 15, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_codonalign", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 877, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 877, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 949, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 951, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 954, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1266, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1266, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1409, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1409, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1552, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1552, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1695, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1695, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1838, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1838, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1963, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 1963, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2088, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2208, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2214, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2214, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2379, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2385, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2517, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2523, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2523, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2649, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2651, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 2654, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3536, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3536, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3679, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3679, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3822, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3822, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3965, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 3965, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4108, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4108, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4233, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4233, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4358, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4358, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4478, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4484, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4484, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4649, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4655, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4787, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4793, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4793, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4919, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4921, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 4924, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5807, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5807, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5851, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5851, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5877, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5877, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5901, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5903, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5906, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5989, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 5989, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6006, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6007, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6021, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6023, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6026, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6088, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6111, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6113, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6140, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6141, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6161, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6187, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6190, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6228, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6228, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6245, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6245, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6262, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6262, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6275, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6277, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6280, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6315, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6315, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6536, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6536, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6766, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6766, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6960, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 6960, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7157, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7157, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7354, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7354, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7543, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7545, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 7548, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8401, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8401, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8454, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8454, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8507, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8507, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8560, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8560, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8613, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8613, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8666, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8666, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8719, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8719, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8772, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8825, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8825, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8878, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8878, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8931, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8931, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8984, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 8984, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9037, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9090, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9090, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9143, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9143, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9196, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9196, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9249, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9249, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9302, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9302, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9355, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9355, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9408, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9408, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9461, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9461, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9514, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9514, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9567, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9620, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9620, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9673, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9673, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9726, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9726, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9779, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9779, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9824, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9825, "pattern": "attribute_call", "note": "Call via attribute access .mapall(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9845, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_codonalign", "lineno": 9846, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_emboss", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 730, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 739, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 831, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 917, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 917, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 931, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1037, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1039, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1071, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1072, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1074, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1099, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1179, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1181, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1214, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1241, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1321, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1323, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1357, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1385, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1475, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1477, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1514, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1517, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1540, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1616, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1617, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1650, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1652, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1675, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1751, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1752, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1784, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1785, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1787, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1810, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1886, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1888, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1925, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1926, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1928, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 1951, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2027, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2029, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2066, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2067, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2069, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2092, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2182, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2185, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2262, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2349, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2352, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2649, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2741, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2744, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2777, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2865, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2868, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2901, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2990, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 2993, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3012, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3100, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3103, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3122, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3213, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3369, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3426, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_emboss", "lineno": 3427, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 20, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_exonerate", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 641, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 725, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 730, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 785, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 788, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 812, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 876, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 879, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 886, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 902, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 903, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 909, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 914, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 969, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 972, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1005, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1010, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1065, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1068, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1099, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1104, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1161, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1165, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1168, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1172, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1175, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1193, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1196, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1202, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1207, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1264, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1267, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1273, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1278, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1335, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1338, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1364, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1369, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1424, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1428, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1431, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1435, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1438, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1456, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1459, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1467, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1472, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1529, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1532, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1540, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1545, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1602, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1605, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1642, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1647, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1704, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1708, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1711, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1715, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1718, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1736, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1737, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1741, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1746, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1803, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1804, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1808, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1813, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1870, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1873, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1879, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1884, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1939, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1943, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1946, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1950, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1953, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1971, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1972, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1978, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 1983, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2040, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2041, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2047, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2052, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2109, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2112, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2120, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2125, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2182, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2186, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2189, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2193, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2196, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2214, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2221, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2226, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2283, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2284, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2288, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2293, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2350, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2353, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2359, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2364, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2419, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2423, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2426, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2430, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2433, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2451, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2453, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2460, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2465, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2522, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2523, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2529, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2534, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2591, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2594, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2602, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2607, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2664, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2668, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2671, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2675, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2678, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2696, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2696, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2700, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2705, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2760, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2764, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2767, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2771, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2774, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2792, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2797, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2802, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2859, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2863, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2866, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2870, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2873, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2891, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2894, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2900, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2905, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2962, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2965, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2973, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 2978, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3035, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3044, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3049, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3106, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3109, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3117, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3122, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3179, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3202, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3207, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3264, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3267, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3294, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3299, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3356, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3359, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3389, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3394, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3451, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3454, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3495, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3500, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3555, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3559, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3562, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3580, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3583, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3591, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3596, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3653, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3661, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3666, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3723, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3726, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3753, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3758, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3815, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3818, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3859, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3864, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3921, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3925, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3928, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3932, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3935, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3953, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3954, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3958, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 3963, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4020, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4021, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4025, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4030, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4087, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4092, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4097, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4152, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4156, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4159, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4163, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4166, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4184, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4185, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4191, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4196, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4253, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4254, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4260, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4265, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4322, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4323, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4329, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4334, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4391, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4395, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4398, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4402, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4405, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4423, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4424, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4428, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4433, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4490, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4491, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4495, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4500, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4557, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4558, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4562, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4567, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4622, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4626, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4629, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4633, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4636, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4654, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4661, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4666, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4723, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4724, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4730, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4735, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4793, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4799, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4804, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4861, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4865, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4868, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4872, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4875, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4893, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4894, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4898, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4903, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4960, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 4963, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5015, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5020, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5077, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5080, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5128, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5133, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5188, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5192, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5195, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5199, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5202, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5220, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5221, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5227, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5232, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5289, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5292, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5345, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5350, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5407, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5410, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5455, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5460, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5517, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5521, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5524, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5528, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5531, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5549, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5550, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5554, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5559, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5616, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5619, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5647, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5652, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5709, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5712, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5742, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5747, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5804, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5805, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5809, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5814, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5871, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5874, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5894, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5899, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5956, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5959, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5981, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 5986, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6041, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6045, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6048, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6052, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6055, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6073, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6074, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6080, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6085, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6142, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6145, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6180, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6185, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6242, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6245, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6284, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6289, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6346, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6347, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6353, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6358, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6415, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6418, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6445, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6450, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6507, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6510, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6539, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6544, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6601, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6605, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6608, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6612, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6615, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6633, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6636, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6642, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6647, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6704, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6707, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6713, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6718, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6773, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6777, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6780, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6784, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6787, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6805, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6808, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6816, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6821, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6878, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6881, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6889, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6894, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6951, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6955, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6958, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6962, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6965, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6983, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6984, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6988, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 6993, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7050, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7052, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7056, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7061, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7118, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7120, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7124, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7129, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7184, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7188, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7191, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7195, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7198, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7216, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7217, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7223, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7228, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7285, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7288, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7296, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7301, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7358, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7361, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7369, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7374, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7431, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7435, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7438, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7442, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7445, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7463, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7465, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7469, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7474, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7531, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7531, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7534, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7539, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7594, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7598, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7601, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7605, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7608, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7628, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7634, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7639, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7696, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7696, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7701, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7706, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7763, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7767, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7770, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7774, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7777, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7795, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7796, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7800, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7805, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7862, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7865, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7871, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7876, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7933, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7936, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7941, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 7996, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8000, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8003, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8025, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8026, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8032, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8037, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8094, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8097, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8105, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8110, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8167, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8170, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8180, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8185, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8242, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8248, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8251, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8255, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8258, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8276, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8279, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8287, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8292, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8347, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8353, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8356, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8360, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8363, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8381, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8384, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8394, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8399, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8456, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8462, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8465, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8469, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8472, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8490, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8493, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8500, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8555, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8561, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8564, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8586, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8589, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8603, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8608, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8665, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8687, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_exonerate", "lineno": 8688, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 623, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 881, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_fasta", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_format_matrix", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 606, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 770, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 922, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 948, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1066, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1069, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1075, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1076, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1078, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1095, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1222, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1223, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1225, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1242, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1363, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1369, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1370, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1372, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1389, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1507, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1510, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1516, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1517, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1519, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1536, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1642, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1645, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1651, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1652, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1654, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1664, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1770, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1773, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1779, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1780, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1782, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1792, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1898, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1901, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1907, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1908, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1910, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 1920, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2026, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2029, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2035, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2036, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2049, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2155, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2158, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2164, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2165, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2167, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2177, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2283, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2286, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2292, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2293, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2295, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2305, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2411, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2414, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2420, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2421, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2423, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2433, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2539, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2542, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2548, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2549, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2551, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2561, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2665, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2668, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2674, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2675, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2677, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2686, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2790, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2793, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2799, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2800, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2802, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2811, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2913, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2916, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2922, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2923, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 2933, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3035, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3044, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3045, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3047, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3056, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3158, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3161, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3167, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3168, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3170, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3177, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3279, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3282, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3288, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3289, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3300, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3406, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3409, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3415, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3416, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3418, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3428, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3534, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3537, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3543, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3544, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3546, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3556, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3658, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3661, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3667, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3668, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3670, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3677, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3795, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3798, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3804, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3805, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3807, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3835, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3941, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3944, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3950, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3951, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3953, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 3964, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4066, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4069, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4075, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4076, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4078, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4086, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4192, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4195, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4201, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4204, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4215, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4329, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4332, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4338, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4339, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4362, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4424, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4429, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4508, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4511, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4517, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4518, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4520, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4551, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4673, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4676, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4682, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4683, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4685, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4715, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4837, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4840, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4846, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4847, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4849, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4872, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4994, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 4997, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5003, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5004, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5006, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5029, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5151, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5154, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5160, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5161, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5163, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5186, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5308, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5311, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5317, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5318, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5320, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5343, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5461, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5464, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5470, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5471, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5473, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5490, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5608, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5611, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5617, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5618, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5620, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5637, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5755, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5758, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5764, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5765, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5767, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5784, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5902, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5905, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5911, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5912, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5914, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 5931, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6037, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6040, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6046, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6047, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6049, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6060, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6166, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6169, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6175, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6176, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6178, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6188, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6294, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6297, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6303, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6304, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6306, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6317, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6423, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6426, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6432, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6433, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6435, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6445, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6551, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6554, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6560, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6561, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6563, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6573, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6675, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6678, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6684, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6685, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6687, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6696, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6802, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6805, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6811, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6812, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6814, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6824, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6930, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6933, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6940, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6942, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 6953, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7059, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7062, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7068, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7069, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7071, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7081, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7183, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7186, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7192, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7193, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7195, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7203, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7309, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7312, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7318, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7319, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7321, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7330, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7436, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7439, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7445, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7446, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7448, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7458, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7560, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7563, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7569, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7570, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7572, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7581, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7683, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7686, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7692, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7693, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7695, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7704, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7810, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7813, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7819, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7820, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7822, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7832, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7936, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7939, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7945, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7946, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7948, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 7957, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8075, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8078, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8084, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8085, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8087, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8116, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8222, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8225, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8232, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8234, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8245, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8351, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8354, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8361, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8363, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8374, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8480, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8483, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8489, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8503, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8609, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8612, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8618, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8619, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8621, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8632, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8750, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8753, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8759, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8760, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8762, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8785, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8847, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8852, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8907, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8910, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8916, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8917, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8917, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 8920, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9018, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9021, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9027, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9028, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9028, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9031, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9129, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9132, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9138, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9142, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9240, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9243, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9249, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9250, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9250, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9253, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9351, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9354, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9361, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9361, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9364, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9462, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9465, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9471, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9472, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9472, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9475, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9573, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9576, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9582, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9583, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9583, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9586, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9682, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9685, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9691, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9695, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9793, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9796, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9802, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9803, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9803, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9806, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9904, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9907, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9913, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9914, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9914, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9917, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9979, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 9984, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10068, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10071, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10077, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10078, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10080, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10115, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10242, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10245, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10251, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10252, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10254, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10287, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10414, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10417, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10423, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10424, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10426, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10461, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10588, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10591, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10597, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10598, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10600, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10638, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10765, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10768, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10774, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10775, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10777, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10816, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10943, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10946, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10952, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10953, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10955, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 10990, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11117, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11120, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11126, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11127, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11129, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11167, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11272, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11275, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11281, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11282, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11284, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11293, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11355, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11360, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11444, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11447, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11453, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11454, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11456, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11495, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11622, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11625, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11634, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11673, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11800, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11803, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11809, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11810, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11812, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11851, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11978, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11981, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11987, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11988, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 11990, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12029, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12156, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12159, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12165, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12166, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12168, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12207, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12334, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12337, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12343, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12344, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12346, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12385, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12512, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12521, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12522, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12524, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12563, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12690, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12693, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12699, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12700, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12702, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12741, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12864, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12867, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12873, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12874, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12876, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 12914, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13041, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13044, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13050, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13051, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13053, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13091, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13218, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13221, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13227, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13228, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13230, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13269, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13396, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13399, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13405, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13406, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13408, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13449, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13576, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13579, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13585, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13586, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13588, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13627, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13754, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13757, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13763, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13764, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13766, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13803, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13934, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13937, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13945, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13946, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13948, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 13990, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14117, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14120, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14128, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14129, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14131, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14171, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14298, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14301, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14309, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14310, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14312, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14351, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14478, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14481, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14489, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14531, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14658, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14661, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14667, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14668, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14670, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14710, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14837, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14840, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14848, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14849, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14851, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 14890, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15017, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15020, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15028, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15029, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15031, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15070, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15197, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15200, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15208, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15209, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15211, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15252, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15379, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15382, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15390, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15391, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15393, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15432, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15559, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15562, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15570, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15571, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15573, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15612, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15739, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15750, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15751, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15753, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15793, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15920, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15923, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15931, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15932, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15934, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 15975, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16094, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16097, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16103, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16104, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16106, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16121, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16240, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16243, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16249, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16250, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16252, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16267, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16380, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16383, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16389, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16390, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16392, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16404, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16466, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16471, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16566, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16569, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16577, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16578, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16580, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16647, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16773, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16776, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16784, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16785, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16787, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16820, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16922, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16931, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16932, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16934, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 16941, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17047, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17050, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17056, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17057, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17059, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17066, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17168, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17171, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17177, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17178, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17180, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17187, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17293, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17296, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17302, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17303, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17305, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17312, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17438, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17441, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17449, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17450, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17452, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17478, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17596, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17599, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17605, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17606, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17608, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17623, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17729, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17732, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17738, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17739, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17741, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17748, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17866, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17869, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17875, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17876, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17878, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17893, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 17999, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18002, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18008, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18009, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18011, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18018, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18136, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18145, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18146, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18148, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18164, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18286, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18289, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18299, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18300, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18302, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18333, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18435, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18438, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18444, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18445, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18447, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18454, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18556, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18559, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18565, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18566, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18568, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18577, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18699, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18702, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18710, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18711, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18713, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18741, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18859, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18862, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18868, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18869, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18871, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18885, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18991, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 18994, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19000, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19001, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19003, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19010, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19116, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19119, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19125, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19126, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19128, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19135, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19241, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19244, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19250, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19251, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19253, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19260, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19382, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19391, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19392, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19394, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19411, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19537, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19540, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19548, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19549, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19551, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19578, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19680, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19683, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19690, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19701, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19807, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19810, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19816, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19819, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19826, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19932, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19935, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19941, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19942, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19944, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 19951, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20069, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20072, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20078, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20079, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20081, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20096, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20198, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20201, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20207, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20208, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20210, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20217, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20323, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20326, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20332, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20333, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20335, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20342, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20459, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20462, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20468, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20469, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20471, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20486, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20616, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20619, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20627, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20628, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20630, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20663, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20778, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20779, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20781, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20788, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20894, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20897, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20903, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20904, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20906, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 20913, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21015, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21018, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21024, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21025, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21027, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21034, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21152, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21155, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21161, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21162, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21164, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21183, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21245, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21250, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21345, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21348, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21354, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21355, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21357, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21422, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21524, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21527, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21533, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21534, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21536, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21543, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21645, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21648, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21654, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21657, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21664, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21782, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21785, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21791, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21792, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21794, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21810, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21912, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21915, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21921, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21922, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21924, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 21933, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22035, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22044, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22045, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22047, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22054, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22172, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22175, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22181, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22184, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22201, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22303, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22306, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22312, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22315, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22324, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22450, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22453, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22463, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22464, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22466, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22497, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22614, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22617, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22623, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22624, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22626, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22641, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22743, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22746, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22752, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22753, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22755, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22762, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22880, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22883, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22889, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22890, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22892, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 22908, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23026, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23029, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23035, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23036, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23052, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23154, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23157, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23163, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23164, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23166, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23173, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23275, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23278, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23284, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23285, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23287, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23296, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23398, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23401, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23407, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23408, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23410, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23418, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23480, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23485, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23501, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23506, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23515, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23623, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23625, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23634, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23635, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23636, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23647, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23705, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_hhr", "lineno": 23706, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_maf", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 745, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 894, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 896, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1160, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1162, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1257, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1430, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1432, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1557, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1660, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1660, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1690, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1713, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1844, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1846, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1895, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1896, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1898, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 1953, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2056, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2056, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2112, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2262, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2264, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2314, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2315, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2317, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2340, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2501, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2503, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2559, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2560, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2562, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2595, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2727, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2729, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2771, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2774, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2789, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2900, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2900, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2925, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2926, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2928, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 2933, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3134, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3136, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3225, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3226, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3228, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3277, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3496, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3498, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3676, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3853, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3855, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3932, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3933, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3935, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 3980, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4101, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4101, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4210, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4351, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4353, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4396, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4397, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4399, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4424, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4545, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4545, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4585, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4586, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4588, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4624, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4773, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4775, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4822, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4823, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4825, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4852, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4993, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 4995, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5045, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5046, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5048, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5084, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5245, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5247, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5315, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5316, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5318, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5376, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5497, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5497, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5527, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5528, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5530, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5546, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5685, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5687, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5741, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5744, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5781, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5920, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5922, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5970, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5971, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5973, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 5996, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6123, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6123, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6160, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6161, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6163, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6193, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6332, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6334, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6382, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6383, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6408, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6565, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6616, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6617, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6619, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6644, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6823, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6825, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6877, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6878, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6880, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 6907, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7080, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7082, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7152, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7153, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7155, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7208, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7341, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7371, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7372, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7374, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7385, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7530, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7533, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7573, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7574, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7576, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7591, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7783, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7785, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7857, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7858, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7860, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 7898, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8133, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8135, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8295, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8434, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8434, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8487, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8488, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8552, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8711, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8713, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8763, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8764, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8766, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8785, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8924, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8924, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8957, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8958, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8960, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 8976, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9199, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9201, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9293, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9294, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9296, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9380, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9591, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9593, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9659, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9660, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9662, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9705, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9958, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 9960, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10056, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10057, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10059, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10128, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10350, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10352, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10441, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10442, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10444, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10483, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10766, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10768, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10903, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10904, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10906, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 10987, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11257, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11259, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11374, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11375, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11377, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11437, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11750, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11752, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 11888, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12197, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12199, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12350, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12647, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12649, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12791, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12981, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 12983, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13054, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13055, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13057, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13095, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13258, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13260, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13317, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13318, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13320, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13347, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13413, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13415, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13416, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13509, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13656, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13658, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13694, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13695, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13697, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13720, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13796, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13798, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13834, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13835, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13837, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13845, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13925, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13927, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13960, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13961, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13963, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 13971, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14033, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14046, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14047, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14048, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14052, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14052, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14061, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14064, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14065, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14066, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14070, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14070, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14079, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14091, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14094, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14095, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14096, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14105, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14114, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14137, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_maf", "lineno": 14138, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_mauve", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 702, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 704, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 707, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 708, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 714, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 795, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 815, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 833, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 907, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 918, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .fromkeys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 998, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1035, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1037, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1040, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1041, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1046, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1047, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1058, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_mauve", "lineno": 1059, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 23, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_msf", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_msf", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_nexus", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 348, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_nexus", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_phylip", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 668, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 839, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 842, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 864, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 1039, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 1097, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_phylip", "lineno": 1098, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 26, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_psl", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 555, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 966, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1032, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1035, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1047, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1050, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1067, "pattern": "attribute_call", "note": "Call via attribute access .swapcase(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1447, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1505, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1510, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1511, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1512, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1533, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1534, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1535, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1594, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1604, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1607, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1618, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1743, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1744, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1746, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1756, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1759, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1770, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1896, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1897, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1899, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1907, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1910, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 1921, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2048, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2049, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2051, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2063, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2066, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2077, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2204, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2207, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2219, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2222, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2233, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2361, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2363, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2373, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2376, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2387, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2518, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2521, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2532, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2675, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2678, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2689, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2816, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2819, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2830, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2833, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2844, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2970, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2971, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2973, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2983, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2986, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 2997, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3136, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3150, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3275, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3276, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3278, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3291, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3294, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3305, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3432, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3433, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3435, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3445, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3448, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3459, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3589, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3592, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3603, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3730, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3731, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3733, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3744, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3747, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3758, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3885, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3886, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3888, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3898, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3901, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 3912, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4039, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4040, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4042, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4053, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4056, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4067, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4194, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4195, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4197, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4208, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4211, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4222, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4349, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4350, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4352, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4362, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4365, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4376, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4502, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4503, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4505, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4514, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4517, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4528, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4655, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4656, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4658, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4668, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4671, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4682, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4809, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4810, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4812, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4822, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4825, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4836, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4930, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4935, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4936, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4937, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4957, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4962, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4963, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 4964, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5015, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5016, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5018, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5026, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5029, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5040, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5165, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5166, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5168, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5178, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5181, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5192, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5318, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5319, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5321, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5329, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5332, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5343, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5437, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5442, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5443, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5444, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5496, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5497, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5499, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5511, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5514, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5525, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5652, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5653, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5667, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5670, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5681, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5808, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5809, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5811, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5821, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5824, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5835, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5966, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5969, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 5980, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6123, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6126, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6137, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6264, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6265, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6267, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6278, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6281, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6292, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6418, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6419, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6421, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6431, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6434, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6445, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6584, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6587, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6598, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6723, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6724, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6726, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6739, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6753, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6880, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6881, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6883, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6893, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6896, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 6907, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7037, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7040, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7051, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7178, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7179, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7181, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7192, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7195, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7206, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7333, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7334, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7336, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7346, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7349, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7360, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7487, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7488, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7501, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7504, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7515, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7642, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7643, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7645, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7656, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7659, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7670, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7797, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7798, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7800, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7810, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7813, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7824, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7950, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7951, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7953, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7962, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7965, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 7976, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8103, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8104, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8106, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8116, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8119, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8130, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8257, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8258, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8260, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8270, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8273, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8284, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8378, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8383, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8384, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8385, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8435, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8436, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8438, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8446, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8449, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8460, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8585, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8586, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8588, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8598, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8601, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8612, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8738, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8739, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8741, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8749, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8752, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8763, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8890, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8891, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8893, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8905, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8908, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 8919, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9046, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9047, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9049, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9061, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9064, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9075, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9202, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9203, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9215, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9218, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9229, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9363, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9374, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9517, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9520, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9531, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9658, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9659, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9661, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9672, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9675, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9686, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9812, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9813, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9815, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9825, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9828, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9839, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9978, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9981, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 9992, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10117, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10118, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10120, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10133, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10136, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10147, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10274, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10275, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10277, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10287, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10290, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10301, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10431, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10434, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10445, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10572, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10573, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10575, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10586, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10589, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10600, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10727, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10728, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10730, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10740, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10743, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10754, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10881, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10882, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10884, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10895, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10898, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 10909, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11036, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11039, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11050, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11053, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11064, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11191, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11192, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11194, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11204, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11207, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11218, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11344, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11345, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11347, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11356, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11359, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11370, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11497, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11498, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11500, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11510, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11513, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11524, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11651, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11652, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11654, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11664, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11667, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11678, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11772, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11777, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11778, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11779, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11789, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11794, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11845, "pattern": "attribute_call", "note": "Call via attribute access .read_dna(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11849, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11852, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11863, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11985, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11988, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 11999, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12129, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12132, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12143, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12273, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12276, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12287, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12405, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12408, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12419, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12535, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12538, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12549, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12670, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12673, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12684, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12814, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12828, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12922, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12927, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12928, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12929, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12952, "pattern": "attribute_call", "note": "Call via attribute access .read_dna(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 12977, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13064, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13081, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13082, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13153, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13153, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13156, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13159, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13172, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13304, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13304, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13307, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13310, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13321, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13453, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13453, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13456, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13459, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13470, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13564, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13569, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13570, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13571, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13595, "pattern": "attribute_call", "note": "Call via attribute access .read_dna(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13614, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13635, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13709, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13724, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13755, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13778, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_psl", "lineno": 13779, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 20, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_sam", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 705, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 773, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 782, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 785, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1174, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1242, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1245, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1254, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1257, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1646, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1724, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1734, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1737, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1831, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1834, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1853, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1915, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1918, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1937, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 1999, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2002, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2021, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2083, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2086, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2105, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2167, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2170, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2189, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2251, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2254, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2273, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2334, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2337, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2356, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2418, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2421, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2448, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2510, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2513, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2532, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2594, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2597, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2616, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2678, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2681, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2700, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2762, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2765, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2784, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2846, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2849, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2868, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2930, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2933, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 2952, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3013, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3016, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3035, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3097, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3100, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3119, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3181, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3184, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3203, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3265, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3268, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3287, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3349, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3352, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3371, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3433, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3436, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3455, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3517, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3520, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3539, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3601, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3604, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3623, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3688, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3691, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3770, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3773, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3792, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3854, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3857, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3876, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3938, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3941, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 3960, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4025, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4028, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4107, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4110, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4129, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4191, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4194, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4213, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4275, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4278, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4297, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4359, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4362, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4381, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4443, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4446, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4473, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4535, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4538, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4557, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4619, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4622, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4641, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4703, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4706, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4725, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4787, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4790, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4809, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4871, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4874, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4893, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4955, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4958, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 4977, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5039, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5042, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5061, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5123, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5126, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5145, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5207, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5210, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5229, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5291, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5294, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5313, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5375, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5378, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5397, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5459, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5462, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5481, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5543, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5546, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5565, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5627, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5630, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5649, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5714, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5717, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5796, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5799, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5818, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5880, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5883, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5902, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5964, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5967, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 5986, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6048, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6051, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6070, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6132, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6135, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6154, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6216, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6219, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6238, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6300, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6303, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6322, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6384, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6387, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6414, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6476, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6479, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6498, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6560, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6563, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6582, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6644, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6647, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6666, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6728, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6731, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6750, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6812, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6815, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6834, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6896, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6899, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6918, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6980, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 6983, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7002, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7064, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7067, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7086, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7148, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7151, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7170, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7232, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7235, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7254, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7316, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7319, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7338, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7400, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7403, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7422, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7484, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7487, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7506, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7568, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7571, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7590, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7655, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7658, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7676, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7676, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7750, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7750, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7974, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 7975, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8118, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8119, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8262, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8263, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8406, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8407, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8545, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8557, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8565, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8566, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8568, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8626, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8627, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8636, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8648, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8656, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8657, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8659, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8719, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8720, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8729, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8741, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8749, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8750, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8752, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8812, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8813, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8822, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8836, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8844, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8845, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8847, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8907, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8908, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8917, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8931, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8940, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 8942, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9002, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9003, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9012, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9026, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9034, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9035, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9095, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9096, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9105, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9119, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9127, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9128, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9130, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9190, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9191, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9200, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9214, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9222, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9223, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9225, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9285, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9286, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9295, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9309, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9317, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9318, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9320, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9378, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9379, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9388, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9402, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9410, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9411, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9413, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9473, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9474, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9483, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9497, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9505, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9506, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9508, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9568, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9569, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9576, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9607, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9630, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_sam", "lineno": 9631, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_stockholm", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 870, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 872, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 959, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1119, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1121, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1183, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1356, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1495, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1704, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1706, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 1833, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2053, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2055, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2212, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2457, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2459, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2562, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2744, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2745, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 2842, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 4009, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 4011, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 4771, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 4893, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 4893, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 4940, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5095, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5097, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5166, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5410, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5412, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5532, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5732, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5734, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 5819, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6002, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6004, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6090, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6220, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6220, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6267, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6360, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6390, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6492, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6525, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6699, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6700, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6762, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6844, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6847, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6850, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6851, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6913, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6914, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6916, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6962, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6965, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6966, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 6968, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7010, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7019, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7020, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7022, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7045, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7048, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7049, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7051, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7070, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7083, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7086, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7101, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7104, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7117, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7120, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7133, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7136, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7149, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7152, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7165, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7168, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7177, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7178, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7180, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7194, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7197, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7198, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7200, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7210, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7221, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7222, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7224, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7280, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7283, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7284, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7286, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7339, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7352, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7355, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7364, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7365, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7367, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7407, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7410, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7411, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7413, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7449, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7462, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7465, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7474, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7475, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7477, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7489, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7492, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7493, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7495, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7503, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7512, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7513, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7525, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7528, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7529, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7531, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7537, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7546, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7547, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7549, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7563, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7566, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7569, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7579, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7588, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7589, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7591, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7628, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7634, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7667, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7677, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7680, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7683, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7684, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7685, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7686, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7687, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7691, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_stockholm", "lineno": 7692, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 12, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 1135, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 1543, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 1570, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 1980, "pattern": "attribute_call", "note": "Call via attribute access .log2(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2395, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2397, "pattern": "attribute_call", "note": "Call via attribute access .mean(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2416, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2417, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2418, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2421, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2438, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_align_substitution_matrices", "lineno": 2439, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Align_tabular", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 536, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 731, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 767, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 848, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 851, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 874, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 877, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 892, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 969, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 972, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 995, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1008, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1103, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1104, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1112, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1189, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1191, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1204, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1207, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1212, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1289, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1304, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1305, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1317, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1398, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1401, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1421, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1422, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1424, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1439, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1545, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1547, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1566, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1569, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1606, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1695, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1698, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1721, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1722, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1724, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1763, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1840, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1843, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1858, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1859, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1861, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1871, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1952, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1955, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1976, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1977, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1979, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 1994, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2071, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2071, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2083, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2084, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2086, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2091, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2168, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2171, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2192, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2193, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2195, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2207, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2288, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2314, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2315, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2317, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2332, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2409, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2412, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2431, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2432, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2434, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2447, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2524, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2527, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2542, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2543, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2545, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2551, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2628, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2631, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2646, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2647, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2649, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2659, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2736, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2738, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2751, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2752, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2754, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2759, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2840, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2843, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2863, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2864, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2866, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2881, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2945, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 2947, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3025, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3027, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3045, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3159, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3161, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3179, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3281, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3284, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3307, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3308, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3310, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3381, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3463, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3466, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3489, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3517, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3591, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3594, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3609, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3610, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3612, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3620, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3694, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3697, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3712, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3713, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3715, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3726, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3800, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3802, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3815, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3816, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3818, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3824, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3898, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3900, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3913, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3914, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3916, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3922, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3996, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 3998, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4011, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4012, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4014, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4021, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4099, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4101, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4120, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4121, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4123, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4140, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4214, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4229, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4230, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4232, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4237, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4315, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4318, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4338, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4339, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4356, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4487, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4489, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4507, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4621, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4623, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4641, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4743, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4746, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4770, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4772, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4843, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4925, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4928, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4951, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4952, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4954, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 4979, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5053, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5056, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5071, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5072, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5074, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5082, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5156, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5159, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5174, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5175, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5177, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5188, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5262, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5264, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5277, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5278, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5280, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5286, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5362, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5375, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5376, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5378, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5384, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5458, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5460, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5473, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5474, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5476, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5483, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5561, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5563, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5582, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5583, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5585, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5602, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5676, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5678, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5691, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5694, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5699, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5777, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5780, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5800, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5801, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5803, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5818, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5878, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5928, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 5993, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6058, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6124, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6190, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6256, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6322, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6388, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6454, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6520, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6586, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6652, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6731, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6800, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6869, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 6946, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7012, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7078, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7144, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7210, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7276, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7342, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7408, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7474, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7548, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7605, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7662, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7719, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7776, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7833, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7890, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 7947, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8004, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8061, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8118, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8175, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8274, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8276, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8302, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8397, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8400, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8429, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8525, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8528, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8557, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8648, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8648, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8674, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8765, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8768, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8797, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8888, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8890, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 8917, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9008, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9011, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9040, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9131, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9133, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9160, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9251, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9254, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9283, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9374, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9376, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9403, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9494, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9497, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9526, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9613, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9616, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9645, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9725, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9790, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9855, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9921, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 9987, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10053, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10119, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10185, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10251, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10317, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10383, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10449, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10521, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10580, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10639, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10698, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10757, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10816, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10875, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10934, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 10993, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11052, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11129, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11132, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11202, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11271, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11274, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11344, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11413, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11416, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11486, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11555, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11558, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11628, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11697, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11700, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11770, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11839, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11842, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11912, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11977, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 11980, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12044, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12113, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12116, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12183, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12248, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12251, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12312, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12377, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12380, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12447, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12512, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12580, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12649, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12652, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12719, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12788, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12791, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12858, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12927, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12930, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 12997, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13062, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13065, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13132, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13197, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13200, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13261, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13330, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13333, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13400, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13469, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13472, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13539, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13604, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13607, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13674, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13743, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13746, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13813, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13878, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13881, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 13947, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14012, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14015, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14080, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14149, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14152, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14219, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14288, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14291, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14358, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14427, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14430, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14497, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14566, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14569, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14636, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14701, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14704, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14769, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14838, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14841, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14908, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14977, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 14980, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15047, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15112, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15115, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15176, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15245, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15248, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15315, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15384, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15387, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15454, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15523, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15526, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15593, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15662, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15665, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15732, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15801, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15804, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15871, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15940, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 15943, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16010, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16075, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16078, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16143, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16208, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16211, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16272, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16341, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16344, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16411, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16476, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16479, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16546, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16611, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16614, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16675, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16744, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16747, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16814, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16883, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16886, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 16953, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17018, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17021, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17088, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17153, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17156, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17217, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17286, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17289, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17356, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17421, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17424, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17491, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17560, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17563, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17630, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17699, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17702, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17769, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17834, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17837, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17904, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17969, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 17972, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18037, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18106, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18109, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18176, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18241, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18244, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18309, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18378, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18381, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18448, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18513, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18516, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18583, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18648, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18651, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18714, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18783, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18786, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18853, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18922, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 18992, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19061, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19064, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19131, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19200, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19203, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19270, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19339, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19342, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19409, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19478, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19481, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19548, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19617, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19620, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19687, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19756, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19759, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19826, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19895, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19898, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 19965, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20034, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20104, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20173, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20176, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20243, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20312, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20315, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20382, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20451, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20454, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20521, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20590, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20593, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20660, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20729, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20732, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20799, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20868, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20871, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 20938, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21007, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21010, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21077, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21146, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21149, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21216, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21285, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21288, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21355, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21424, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21427, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21494, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21563, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21566, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21633, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21702, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21705, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21772, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21841, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21844, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21911, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21980, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 21983, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22050, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22119, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22122, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22189, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22258, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22261, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22328, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22397, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22400, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22467, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22536, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22539, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22606, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22675, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22678, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22745, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22814, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22817, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22884, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22953, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 22956, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23023, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23088, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23091, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23158, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23223, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23226, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23289, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23354, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23357, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23418, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23487, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23557, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23626, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23629, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23696, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23765, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23768, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23835, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23900, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23903, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 23970, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24039, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24042, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24109, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24174, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24177, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24244, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24309, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24312, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24373, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24442, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24445, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24512, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24581, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24584, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24651, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24720, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24723, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24790, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24855, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24858, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24925, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24994, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 24997, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25064, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25133, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25136, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25203, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25272, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25275, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25342, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25411, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25414, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25481, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25550, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25553, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25620, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25759, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25824, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25827, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25893, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25962, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 25965, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26032, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26097, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26100, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26167, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26236, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26239, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26306, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26375, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26378, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26445, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26514, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26517, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26584, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26653, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26656, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26723, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26792, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26795, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26862, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26931, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 26934, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27001, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27066, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27069, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27134, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27199, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27267, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27336, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27339, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27406, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27471, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27474, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27541, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27606, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27609, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27670, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27735, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27738, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27805, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27870, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27873, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 27938, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28003, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28006, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28067, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28132, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28135, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28196, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28261, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28264, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28325, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28390, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28393, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28454, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28519, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28522, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28587, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28652, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28720, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28785, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28788, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28849, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28914, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28917, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 28978, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29043, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29046, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29111, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29176, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29179, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29244, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29309, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29312, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29377, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29442, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29445, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29506, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29575, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29578, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29645, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29710, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29713, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29778, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29843, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29846, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29911, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29976, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 29979, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30040, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30105, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30108, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30169, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30234, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30237, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30298, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30363, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30366, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30427, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30492, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30495, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30556, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30621, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30624, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30685, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30750, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30753, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30818, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30883, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30886, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 30947, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31012, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31015, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31076, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31141, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31144, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31209, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31274, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31277, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31338, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31403, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31406, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31467, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31532, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31535, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31596, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31661, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31664, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31725, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31790, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31793, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31854, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31919, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31922, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 31983, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32048, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32051, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32112, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32177, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32180, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32241, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32306, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32309, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32370, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32435, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32438, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32499, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32564, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32567, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32628, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32693, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32696, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32757, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32822, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32825, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32886, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32951, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 32954, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33015, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33080, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33083, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33144, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33209, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33212, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33273, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33338, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33402, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33467, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33470, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33531, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33596, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33599, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33660, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33725, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33728, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33789, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33854, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33857, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33918, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33983, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 33986, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34047, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34112, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34115, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34176, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34241, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34244, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34305, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34370, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34373, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34434, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34499, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34502, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34563, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34628, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34631, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34692, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34757, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34760, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34821, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34886, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34889, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 34950, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35015, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35018, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35079, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35144, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35147, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35208, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35273, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35276, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35337, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35402, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35405, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35466, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35531, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35534, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35595, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35660, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35663, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35724, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35789, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35792, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35853, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35918, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35921, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 35982, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36047, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36050, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36111, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36176, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36179, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36240, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36305, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36308, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36369, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36434, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36437, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36502, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36567, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36570, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36631, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36696, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36699, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36764, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36829, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36832, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36897, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36962, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 36965, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37030, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37095, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37098, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37163, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37228, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37231, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37296, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37361, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37364, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37425, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37490, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37493, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37554, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37619, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37622, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37683, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37748, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37751, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37812, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37877, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37880, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 37941, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38006, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38009, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38070, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38135, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38138, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38199, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38264, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38267, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38328, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38393, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38396, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38457, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38522, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38525, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38586, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38651, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38654, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38715, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38780, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38783, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38844, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38909, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38912, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 38973, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39038, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39041, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39102, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39167, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39170, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39231, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39296, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39299, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39360, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39425, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39428, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39489, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39554, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39557, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39618, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39683, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39686, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39747, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39812, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39815, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39876, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39941, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 39944, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40005, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40070, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40073, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40134, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40199, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40263, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40328, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40331, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40392, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40457, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40460, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40521, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40586, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40589, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40650, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40715, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40718, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40779, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40844, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40847, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40908, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40973, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 40976, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41037, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41102, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41105, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41166, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41234, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41295, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41360, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41363, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41424, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41489, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41556, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41621, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41624, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41691, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41756, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41759, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41826, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41891, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41894, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 41961, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42026, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42029, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42096, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42161, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42164, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42225, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42290, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42293, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42354, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42419, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42422, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42487, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42552, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42555, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42616, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42681, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42684, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42745, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42810, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42813, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42874, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 42942, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43003, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43068, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43071, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43136, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43201, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43204, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43269, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43334, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43337, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43398, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43463, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43466, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43531, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43591, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Align_tabular", "lineno": 43592, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .seekable(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .isatty(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .fileno(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .fileno(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .fileno(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 396, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_bgzf", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_MySQLdb", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_MySQLdb", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_MySQLdb_online", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_MySQLdb_online", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_MySQLdb_online", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_mysql_connector", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_mysql_connector", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_mysql_connector_online", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_mysql_connector_online", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_mysql_connector_online", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_psycopg2", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_psycopg2", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_psycopg2_online", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_psycopg2_online", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_psycopg2_online", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .load_database_sql(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .new_database(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .commit(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .lookup(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 69, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'BackwardsCompatibilityTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3_online", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3_online", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_BioSQL_sqlite3_online", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 676, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 740, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 963, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 966, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1080, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1193, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1196, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1306, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1309, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1419, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1422, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1533, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1536, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1647, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1650, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1759, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1762, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1871, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1874, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1967, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1969, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1972, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 1979, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2039, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2201, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2204, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2335, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2338, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2432, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2435, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2563, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2566, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2694, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2697, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2825, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2828, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2956, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 2959, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3087, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3090, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3211, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3214, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3308, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3311, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3426, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3428, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3438, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3468, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3470, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3473, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3480, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3482, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3485, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3496, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3535, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3622, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3625, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3717, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3720, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3807, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3810, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3882, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3885, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3972, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 3975, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4048, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4051, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4137, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4140, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4213, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4216, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4305, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4308, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4380, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4383, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4470, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4473, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4573, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4576, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4665, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4668, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4758, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4761, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4847, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4850, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4928, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4930, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4933, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4940, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4942, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4945, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 4952, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5038, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5041, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5147, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5149, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5152, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5163, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5339, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5342, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5439, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5442, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5535, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5538, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5629, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5723, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5726, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5817, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5820, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5911, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 5914, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6005, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6008, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6099, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6102, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6193, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6196, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6283, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6286, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6401, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6404, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6494, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6497, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6590, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6593, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6689, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6692, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6786, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6789, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6883, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6886, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6980, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 6983, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7077, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7080, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7174, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7177, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7270, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7273, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7395, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7398, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7470, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7473, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7553, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7556, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7636, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7639, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7719, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7722, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7804, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7807, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7887, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7890, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7976, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 7979, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8059, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8062, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8141, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8144, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8237, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8240, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8320, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8323, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8409, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8412, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8496, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8499, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8582, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8585, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8662, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8665, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8742, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8745, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8822, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8825, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8904, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8907, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8988, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 8991, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9090, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9093, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9202, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9312, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9315, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9423, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9426, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9533, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9536, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9652, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9761, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9764, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9872, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9875, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9983, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 9986, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10095, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10098, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10194, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10196, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10199, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10206, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10318, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10321, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10403, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10406, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10507, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10510, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10616, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10619, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10700, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10703, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10784, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10787, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10868, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10871, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10952, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 10955, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11036, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11039, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11119, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11122, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11187, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11202, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11204, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11207, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11214, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11216, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11219, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11230, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11268, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11361, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11364, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11487, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11612, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11615, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11737, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11740, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11863, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11866, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11988, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 11991, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12113, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12116, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12239, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12242, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12365, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12368, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12489, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12597, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12599, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12602, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12609, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12611, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12614, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12625, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12776, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12779, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12899, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 12902, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13022, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13025, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13126, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13129, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13242, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13245, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13340, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13342, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13345, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13352, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13391, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13487, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13490, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13581, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13584, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13662, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13665, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13754, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13757, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13846, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13849, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 13942, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14032, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14035, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14124, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14127, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14217, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14220, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14310, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14403, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14406, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14480, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14482, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14485, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14492, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14494, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14497, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14508, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14523, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14538, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14540, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14543, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14550, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14552, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14555, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14632, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14635, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14685, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14688, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14723, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14738, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14753, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14755, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14758, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14765, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14767, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14770, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14893, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14896, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14987, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 14990, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15045, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15058, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15078, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15100, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15122, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15147, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15166, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_parser", "lineno": 15167, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_Record", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_Record", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_Record", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_Record", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Blast_Record", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_CAPS", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_CAPS", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_cellosaurus", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_cellosaurus", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Chi2", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Chi2", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 14, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Cluster", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 555, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 719, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 754, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 756, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 785, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 797, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 858, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 895, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 907, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 944, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 969, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 981, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 994, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 995, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1004, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1055, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1097, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1098, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1115, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1181, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1191, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1243, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1255, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1274, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1278, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1281, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1284, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1290, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1290, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1293, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1293, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1351, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1390, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1396, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1402, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1408, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1414, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1420, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1446, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1452, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1458, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1464, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1470, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1476, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1502, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1508, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1514, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1520, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1526, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1532, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1558, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1564, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1570, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1576, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1582, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1588, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1597, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1606, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1635, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1642, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1649, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1656, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1663, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1670, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1695, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1702, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1709, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1716, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1723, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1730, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1755, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1762, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1769, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1776, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1783, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1790, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1815, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1822, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1829, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1836, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1843, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1850, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1860, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1877, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1943, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1958, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1973, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 1988, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2003, "pattern": "attribute_call", "note": "Call via attribute access .cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2018, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2080, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2142, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2204, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2227, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2228, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2237, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2249, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2250, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2268, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2281, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2294, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2321, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2361, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2374, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2440, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2453, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2493, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2506, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2560, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2569, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2613, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2630, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2670, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2683, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2697, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2703, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2716, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2722, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2737, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2746, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2749, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2760, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2773, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2787, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2897, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2929, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2930, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2931, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2932, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2933, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2940, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2944, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2955, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2958, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2964, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2970, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2979, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2986, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2994, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 2997, "pattern": "attribute_call", "note": "Call via attribute access .ones(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 3005, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 3059, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 3114, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Cluster", "lineno": 3115, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .CodonSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .get_codon_num(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .get_codon(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .get_codon(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .get_codon(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .get_codon(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .toSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .CodonSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .CodonSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .CodonSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .CodonSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .CodonAlignment(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .get_aln_length(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .toMultipleSeqAlignment(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .toMultipleSeqAlignment(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .get_dn_ds_matrix(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .get_dn_ds_matrix(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .mktest(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_codonalign", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access .__str__(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 786, "pattern": "attribute_call", "note": "Call via attribute access .__str__(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 820, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_CodonTable", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 22, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_ColorSpiral", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .rgb_to_hsv(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .ellipse(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .setFillColor(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .rect(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_ColorSpiral", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Compass", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Compass", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Compass", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Compass", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Compass", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Consensus", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_EMBL_unittest", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_EmbossPrimer", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .NonCallableMock(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .add_header(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .patch(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .assertIsInstance(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .assertCountEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .patch(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 382, "pattern": "name_call_unresolved", "note": "Call to 'etool(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Entrez", "lineno": 386, "pattern": "name_call_unresolved", "note": "Call to 'etool(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Entrez", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .patch(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 391, "pattern": "name_call_unresolved", "note": "Call to 'etool(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Entrez", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .rmtree(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .union(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .loadTestsFromName(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .TestLoader(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .DocTestSuite(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .TestSuite(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_online", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .splitext(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .dump(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 8866, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 8867, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 8876, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 8915, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Entrez_parser", "lineno": 8916, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Enzyme", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy_offline", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_ExPASy_offline", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_File", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_File", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .rmtree(...) - target object type not statically resolved." }, { "module": "Tests.test_File", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_File", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .absolute(...) - target object type not statically resolved." }, { "module": "Tests.test_File", "lineno": 102, "pattern": "name_call_unresolved", "note": "Call to 'CustomPathLike(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_File", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_File", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 2363, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 2364, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 2951, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 2952, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 2979, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 2980, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 3007, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 3008, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 3062, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 3063, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 3474, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 3475, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6264, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6265, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6843, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6844, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6903, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6904, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6963, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 6964, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7081, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7082, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7141, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7142, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7492, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7493, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7508, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7509, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7560, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7561, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7574, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7575, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7586, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7587, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7598, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7599, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7615, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7616, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7640, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7641, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7646, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7646, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7650, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7650, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7654, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7654, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7658, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7658, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7664, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7665, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7676, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7677, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7688, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7689, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7702, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7703, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7710, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7711, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7728, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7730, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7738, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7746, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7753, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7754, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7756, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7757, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7779, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7788, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7796, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7807, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7832, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7832, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7842, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7842, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7857, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7857, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7889, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7890, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7904, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7904, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7907, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7907, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7922, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7923, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7954, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7956, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7996, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 7999, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8003, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8004, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8009, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8011, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8012, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8015, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8032, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8033, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8035, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8051, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8052, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8054, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8070, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8071, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8073, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8085, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8086, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8088, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8105, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8124, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8125, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8127, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8128, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8129, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8138, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8146, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8147, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8149, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8150, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8151, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8159, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8175, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8183, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8184, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8186, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8187, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8188, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8196, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8205, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8213, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8214, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8299, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8300, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8304, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8308, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8314, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8376, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8380, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8386, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8400, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8404, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8410, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8457, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8465, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8468, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8469, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8483, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8484, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8491, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8492, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8496, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8497, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8501, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8502, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8516, "pattern": "attribute_call", "note": "Call via attribute access .parse_cds_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8518, "pattern": "attribute_call", "note": "Call via attribute access .parse_cds_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8524, "pattern": "attribute_call", "note": "Call via attribute access .parse_records(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8650, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_GenBank", "lineno": 8651, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .clone(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 99, "pattern": "name_call_unresolved", "note": "Call to 'function(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 112, "pattern": "name_call_unresolved", "note": "Call to 'function(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .cos(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .sin(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 258, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 316, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 411, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 578, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 583, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 605, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 621, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 627, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 655, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 666, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 672, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 675, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 680, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 686, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 719, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 743, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 745, "pattern": "attribute_call", "note": "Call via attribute access .get_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 749, "pattern": "attribute_call", "note": "Call via attribute access .get_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .get_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 759, "pattern": "attribute_call", "note": "Call via attribute access .del_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 760, "pattern": "attribute_call", "note": "Call via attribute access .get_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 764, "pattern": "attribute_call", "note": "Call via attribute access .get_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .move_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 781, "pattern": "attribute_call", "note": "Call via attribute access .renumber_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 794, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access .write_to_string(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 810, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 816, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 827, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 858, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 870, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 879, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 880, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .write_to_string(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 886, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 887, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 891, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 900, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 901, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 906, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 909, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 942, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 957, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 972, "pattern": "attribute_call", "note": "Call via attribute access .new_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 975, "pattern": "attribute_call", "note": "Call via attribute access .new_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 978, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 985, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 994, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1001, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1002, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1004, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1011, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1012, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1017, "pattern": "name_call_unresolved", "note": "Call to 'Diagram(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1019, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1028, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1031, "pattern": "name_call_unresolved", "note": "Call to 'FeatureSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1032, "pattern": "name_call_unresolved", "note": "Call to 'FeatureSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1034, "pattern": "name_call_unresolved", "note": "Call to 'FeatureSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1035, "pattern": "name_call_unresolved", "note": "Call to 'FeatureSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1036, "pattern": "name_call_unresolved", "note": "Call to 'FeatureSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1037, "pattern": "name_call_unresolved", "note": "Call to 'FeatureSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1051, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1060, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1071, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1071, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1078, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1079, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1080, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1080, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1084, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1085, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1089, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1090, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1090, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1094, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1095, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1096, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1096, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1099, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1100, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1101, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1101, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1105, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1106, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1107, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1110, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1111, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1113, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1114, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1115, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1115, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1117, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1118, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1119, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1119, "pattern": "name_call_unresolved", "note": "Call to 'CrossLink(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1126, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1128, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1132, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1135, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1138, "pattern": "attribute_call", "note": "Call via attribute access .add_feature(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1142, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1143, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1144, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1145, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1147, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1148, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1151, "pattern": "attribute_call", "note": "Call via attribute access .set_all_features(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1153, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1154, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1156, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1157, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1159, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1162, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1163, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1170, "pattern": "name_call_unresolved", "note": "Call to 'GraphSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1173, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1181, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1184, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1186, "pattern": "name_call_unresolved", "note": "Call to 'GraphSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1187, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1195, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1203, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1209, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1211, "pattern": "name_call_unresolved", "note": "Call to 'GraphSet(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .new_graph(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1220, "pattern": "name_call_unresolved", "note": "Call to 'Track(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1221, "pattern": "attribute_call", "note": "Call via attribute access .add_set(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1225, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1226, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1227, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1228, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1229, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1230, "pattern": "attribute_call", "note": "Call via attribute access .add_track(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1236, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1237, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1240, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1248, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1249, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1251, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1258, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1259, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1261, "pattern": "attribute_call", "note": "Call via attribute access .set_all_tracks(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1262, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1271, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1272, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1276, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_GenomeDiagram", "lineno": 1277, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_geo", "lineno": 4986, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_geo", "lineno": 4987, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 28, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 37, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 50, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 99, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 110, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 115, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsBitmaps", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 28, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .choice(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .random(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .choice(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .random(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .dumpProperties(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .getProperties(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .setProperties(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .random(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 410, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .add_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .add_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .add_label(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .set_scale(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access ._color_from_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access ._color_from_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .add_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .add_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 455, "pattern": "attribute_call", "note": "Call via attribute access .add_label(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .fill_chromosome(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .add_count(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .add_label(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .get_segment_info(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsChromosome", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 24, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .uniform(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsDistribution", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .seed(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .randrange(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_GraphicsGeneral", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .get_KGML(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_KEGG_online", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_KeyWList", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KeyWList", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KeyWList", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_KeyWList", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 24, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_KGML_graphics", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_KGML_graphics", "lineno": 42, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_KGML_graphics", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .mkdir(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 29, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .mkdir(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_graphics_online", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .mkdir(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .gettempprefix(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .gettempprefix(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .get_KGML(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_KGML_nographics", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .isdir(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .rmtree(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access ._get_record(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 238, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestGetRecord' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_MafIO_index", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access ._get_record(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 323, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestGetRecord' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_MafIO_index", "lineno": 335, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .get_spliced(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .get_spliced(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 617, "pattern": "attribute_call", "note": "Call via attribute access .get_spliced(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 662, "pattern": "attribute_call", "note": "Call via attribute access .get_spliced(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 679, "pattern": "attribute_call", "note": "Call via attribute access .get_spliced(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 714, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 714, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_MafIO_index", "lineno": 744, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Medline", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Medline", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_mmtf", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .get_models(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .get_models(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 143, "pattern": "name_call_unresolved", "note": "Call to 'MMTFIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_mmtf", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 190, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_mmtf", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 192, "pattern": "name_call_unresolved", "note": "Call to 'MMTFIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_mmtf", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 221, "pattern": "name_call_unresolved", "note": "Call to 'MMTFIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_mmtf", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 234, "pattern": "name_call_unresolved", "note": "Call to 'CAonly(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_mmtf", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf_online", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf_online", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf_online", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf_online", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf_online", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_mmtf_online", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 20, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_motifs", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1337, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1339, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1378, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1380, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1426, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1428, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1478, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1480, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1481, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1481, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1483, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1485, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1489, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1489, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1490, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1490, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1492, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1492, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1568, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1570, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1593, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1595, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1662, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1664, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1766, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1768, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1846, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1848, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1901, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1903, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1967, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 1969, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2029, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2031, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2086, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2088, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2154, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2156, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2211, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2213, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2293, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2295, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2384, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2386, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2439, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2441, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2485, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2487, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2539, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2541, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2603, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2605, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2669, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2671, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2731, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2733, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2802, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2804, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2890, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2892, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2964, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 2966, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 3975, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 3977, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4018, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4020, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4062, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4064, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4114, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4116, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4157, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4159, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4200, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4838, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4840, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4860, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4862, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4923, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4943, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4945, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4964, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4997, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 4999, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5013, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5015, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5022, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5023, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5107, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5108, "pattern": "attribute_call", "note": "Call via attribute access .log_odds(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5109, "pattern": "attribute_call", "note": "Call via attribute access .calculate(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5126, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5127, "pattern": "attribute_call", "note": "Call via attribute access .log_odds(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5128, "pattern": "attribute_call", "note": "Call via attribute access .calculate(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5140, "pattern": "attribute_call", "note": "Call via attribute access .normalize(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5141, "pattern": "attribute_call", "note": "Call via attribute access .log_odds(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5142, "pattern": "attribute_call", "note": "Call via attribute access .calculate(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5150, "pattern": "attribute_call", "note": "Call via attribute access .isnan(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5161, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs", "lineno": 5162, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs_online", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs_online", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .weblogo(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs_online", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .weblogo(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs_online", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_motifs_online", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2041, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2084, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2117, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2146, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2177, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2187, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2281, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2311, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2343, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2515, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2593, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 2835, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 3193, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 3579, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4010, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4078, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4390, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4391, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4392, "pattern": "attribute_call", "note": "Call via attribute access .BytesIO(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4407, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBIXML", "lineno": 4408, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .Mock(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .Mock(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 266, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_NCBI_qblast", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_NCBI_qblast", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .normpath(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 749, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 750, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 751, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 865, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 866, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 867, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 898, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 899, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 900, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 928, "pattern": "attribute_call", "note": "Call via attribute access .write_alignment(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 929, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 930, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 942, "pattern": "attribute_call", "note": "Call via attribute access .write_alignment(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 943, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 944, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 957, "pattern": "attribute_call", "note": "Call via attribute access .write_alignment(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 958, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 959, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 972, "pattern": "attribute_call", "note": "Call via attribute access .write_alignment(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 973, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 982, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 988, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 989, "pattern": "attribute_call", "note": "Call via attribute access .search_taxon(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .display(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 994, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1020, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1024, "pattern": "attribute_call", "note": "Call via attribute access .is_compatible(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1096, "pattern": "attribute_call", "note": "Call via attribute access .get_data(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1196, "pattern": "attribute_call", "note": "Call via attribute access .get_data(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1235, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1237, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1240, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1253, "pattern": "attribute_call", "note": "Call via attribute access .node(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1253, "pattern": "attribute_call", "note": "Call via attribute access .get_succ(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1557, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1558, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1559, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1577, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1594, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1595, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1597, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1598, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1602, "pattern": "attribute_call", "note": "Call via attribute access .write_file(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1606, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Nexus", "lineno": 1607, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .residue_dict(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .write_header(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .writelines(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_NMR", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise2", "lineno": 23, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_pairwise2", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise2", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise2_no_C", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise2_no_C", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_pairwise_aligner", "lineno": 904, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 908, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 961, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 963, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 966, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1026, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1027, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1030, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1083, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1085, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1088, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1197, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1198, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1201, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1262, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1263, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1266, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1407, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1408, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1411, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1502, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1503, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1506, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1581, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1581, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1583, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1624, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1665, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1728, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1728, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1730, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1771, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1812, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1881, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1881, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1883, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1924, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 1965, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2028, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2028, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2030, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2071, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2112, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2180, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2180, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2182, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2223, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2264, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2327, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2327, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2329, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2370, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2411, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2485, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2487, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2490, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2531, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2572, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2635, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2635, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2637, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2678, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2719, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2789, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2789, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2791, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2832, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2873, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2936, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2938, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2941, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 2982, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3023, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3097, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3099, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3102, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3143, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3184, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3247, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3247, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3249, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3290, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3331, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3401, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3401, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3403, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3444, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3485, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3548, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3548, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3550, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3591, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3632, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3734, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3734, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3736, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3777, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3833, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3833, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3835, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3876, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3939, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3939, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3941, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 3982, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4038, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4040, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4081, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4181, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4182, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4185, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4226, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4282, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4282, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4284, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4325, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4388, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4389, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4392, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4433, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4489, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4489, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4491, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4532, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4631, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4632, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4635, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4676, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4739, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4740, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4743, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4784, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4885, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4886, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4889, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4930, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4993, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4994, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 4997, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5038, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5137, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5138, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5141, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5182, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5238, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5239, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5242, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5283, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5346, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5347, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5350, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5391, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5447, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5448, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5451, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5492, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5592, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5593, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5596, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5637, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5700, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5701, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5704, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5745, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5843, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5844, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5847, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5888, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5944, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5945, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5948, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 5989, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6052, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6053, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6056, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6097, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6153, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6154, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6157, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6198, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6298, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6299, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6302, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6343, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6406, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6407, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6410, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6451, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6551, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6552, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6555, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6596, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6659, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6660, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6663, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6704, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6804, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6805, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6808, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6849, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6912, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6913, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6916, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 6957, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7058, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7058, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7060, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7101, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7157, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7158, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7161, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7202, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7258, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7258, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7260, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7301, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7364, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7364, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7366, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7407, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7463, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7464, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7467, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7508, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7564, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7564, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7566, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7607, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7709, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7709, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7711, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7752, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7816, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7816, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7818, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7859, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7963, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7964, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 7967, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8008, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8064, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8065, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8068, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8109, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8172, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8173, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8176, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8217, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8273, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8274, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8277, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8318, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8418, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8419, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8422, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8463, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8526, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8527, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8530, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8571, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8674, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8675, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8678, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8719, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8775, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8776, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8779, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8820, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8876, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8877, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8880, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8921, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8984, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8985, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 8988, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9029, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9085, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9086, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9089, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9130, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9186, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9187, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9190, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9231, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9338, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9338, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9340, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9377, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9420, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9477, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9478, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9481, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9522, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9561, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9625, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9625, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9627, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9668, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9707, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9764, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9765, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9768, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9809, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9848, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9896, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9958, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9958, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 9960, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10001, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10040, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10104, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10104, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10106, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10147, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10186, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10289, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10289, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10291, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10332, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10371, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10435, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10435, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10437, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10478, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10517, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10623, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10623, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10625, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10662, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10705, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10762, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10763, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10766, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10807, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10846, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10910, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10910, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10912, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10953, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 10992, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11049, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11050, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11053, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11094, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11133, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11238, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11238, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11240, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11281, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11320, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11384, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11384, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11386, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11427, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11466, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11571, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11571, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11573, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11614, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11653, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11717, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11717, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11719, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11760, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11799, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11896, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11896, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11898, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 11939, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12033, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12033, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12035, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12076, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12132, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12132, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12134, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12175, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12271, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12271, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12273, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12314, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12490, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12492, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12495, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12536, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12599, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12601, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12604, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12645, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12754, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12755, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12758, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12799, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12855, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12856, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12859, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12900, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12963, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12964, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 12967, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13008, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13064, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13065, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13068, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13109, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13214, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13215, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13218, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13259, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13322, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13323, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13326, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13367, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13446, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13448, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13451, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13492, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13548, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13549, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13552, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13593, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13649, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13651, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13654, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13695, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13751, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13752, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13755, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13796, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13859, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13861, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13864, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13905, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13961, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13962, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 13965, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14006, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14062, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14064, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14067, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14108, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14164, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14165, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14168, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14209, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14313, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14313, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14315, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14356, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14412, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14412, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14414, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14455, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14518, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14518, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14520, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14561, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14617, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14617, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14619, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14660, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14769, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14769, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14771, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14812, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14868, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14868, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14870, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14911, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14974, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14974, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 14976, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15017, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15073, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15073, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15075, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15116, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15221, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15221, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15223, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15264, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15320, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15320, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15341, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15341, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15343, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15384, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15440, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15440, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15442, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15483, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15562, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15562, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15564, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15605, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15661, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15661, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15663, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15704, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15767, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15767, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15769, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15810, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15866, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15866, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15868, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 15909, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16041, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16101, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16168, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16228, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16313, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16318, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16323, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16371, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16412, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16489, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16571, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16637, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16718, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16791, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16864, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16928, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16931, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16936, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16937, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16938, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16939, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16961, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 16976, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17023, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17029, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17035, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17036, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17037, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17039, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17058, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17123, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17183, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17231, "pattern": "attribute_call", "note": "Call via attribute access .eye(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17248, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17295, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17336, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17341, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17347, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17350, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17375, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17378, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17526, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17717, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17974, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17975, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 17978, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18036, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18038, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18041, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18117, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18118, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18121, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18189, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18244, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18330, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18331, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18334, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18408, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18409, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18412, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18482, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18483, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18562, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18563, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18568, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18632, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18632, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18633, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18672, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18678, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18684, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18689, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18715, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18721, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18727, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18732, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18758, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18764, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18770, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18775, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18797, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18803, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18809, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18814, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18834, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18840, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18846, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18851, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18873, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18879, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18885, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18890, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18909, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18915, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18921, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18926, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18947, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18953, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18959, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18964, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18984, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18990, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 18996, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19001, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19023, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19029, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19035, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19040, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19070, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19110, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19150, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19195, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19201, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19207, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19229, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19269, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19309, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19354, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19360, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19366, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19389, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19429, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19469, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19514, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19520, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19526, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19532, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19549, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19589, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19629, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19675, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19681, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19687, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19712, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19752, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19792, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19838, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19844, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19850, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19871, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19911, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19951, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 19997, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20003, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20009, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20031, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20071, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20111, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20157, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20163, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20169, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20175, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20192, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20232, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20272, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20318, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20324, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20330, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20382, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20420, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20471, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20509, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20560, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20598, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20649, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20687, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20738, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20776, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20827, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20865, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20916, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 20954, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21005, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21043, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21094, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21132, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21201, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21394, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21493, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21591, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21689, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 21809, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22131, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22199, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22260, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22347, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22399, "pattern": "attribute_call", "note": "Call via attribute access .counts(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22441, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_aligner", "lineno": 22442, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 631, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 636, "pattern": "attribute_call", "note": "Call via attribute access .popen(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 637, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 638, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 667, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 675, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 685, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 685, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 697, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 706, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .randint(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 742, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 748, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 756, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 762, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 778, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 784, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 790, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 799, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 812, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 822, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 828, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 843, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 862, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 863, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 921, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 924, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 925, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 933, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 934, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 992, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 997, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_pairwise_alignment_map", "lineno": 998, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .rmdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .read_ctl_file(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 288, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_baseml", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .rmdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .read_ctl_file(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 269, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .combinations(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .combinations(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_codeml", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .access(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 59, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PAML_tools", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .read_ctl_file(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 92, "pattern": "self_method_not_found", "note": "self.assertGreater(...) not found in class 'CodemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 93, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'CodemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 94, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'CodemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 95, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'CodemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .read_ctl_file(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 113, "pattern": "self_method_not_found", "note": "self.assertGreater(...) not found in class 'BasemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 114, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'BasemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 115, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BasemlTest' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .read_ctl_file(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 135, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'Yn00Test' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_PAML_tools", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_tools", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .rmdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .read_ctl_file(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .glob(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PAML_yn00", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Pathway", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_alphafold_db", "lineno": 10, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_alphafold_db", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_binary_cif", "lineno": 13, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_binary_cif", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_binary_cif", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_binary_cif", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 16, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .asarray(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 38, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 42, "pattern": "name_call_unresolved", "note": "Call to 'CEAligner(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .set_reference(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 64, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 70, "pattern": "name_call_unresolved", "note": "Call to 'CEAligner(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .set_reference(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 83, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 87, "pattern": "name_call_unresolved", "note": "Call to 'CEAligner(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .set_reference(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 98, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 102, "pattern": "name_call_unresolved", "note": "Call to 'CEAligner(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .set_reference(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .align(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_CEAligner", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 22, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Dice", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Dice", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 28, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Disordered", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .get_unpacked_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 86, "pattern": "name_call_unresolved", "note": "Call to 'PDBIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Disordered", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .disordered_remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .disordered_remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .disordered_add(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .disordered_remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .disordered_remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .disordered_remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Disordered", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 28, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .check_output(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .check_call(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .check_output(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .SkipTest(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 96, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 97, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 105, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 118, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 130, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 140, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 150, "pattern": "name_call_unresolved", "note": "Call to 'make_dssp_dict(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 156, "pattern": "name_call_unresolved", "note": "Call to 'make_dssp_dict(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 161, "pattern": "name_call_unresolved", "note": "Call to 'make_dssp_dict(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 180, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 184, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 213, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 218, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 233, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 247, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 261, "pattern": "name_call_unresolved", "note": "Call to 'DSSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_DSSP", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_DSSP", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 25, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Exposure", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 43, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Exposure", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 62, "pattern": "name_call_unresolved", "note": "Call to 'HSExposureCA(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Exposure", "lineno": 87, "pattern": "name_call_unresolved", "note": "Call to 'HSExposureCB(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Exposure", "lineno": 109, "pattern": "name_call_unresolved", "note": "Call to 'ExposureCN(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Exposure", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Exposure", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 32, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 36, "pattern": "name_call_unresolved", "note": "Call to 'FragmentMapper(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_FragmentMapper", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .distance_plot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .dihedral_signs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .copy_initNCaCs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .distplot_to_dh_arrays(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .distance_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .deg2rad(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .bits(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .bits(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .abs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .abs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 219, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .set_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .get_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .set_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .bond_set(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .set_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .get_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .set_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .get_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 337, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .get_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 374, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .group(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .set_flexible(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .set_hbond(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .findall(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .atom_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .distance_plot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .distance_plot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .dihedral_signs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .init_edra(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .distplot_to_dh_arrays(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .distance_to_internal_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .zeros(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .copy_initNCaCs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .distance_plot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .abs(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .amax(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .make_extended(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .get_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .set_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .internal_to_atom_coordinates(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .round(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .update_dCoordSpace(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 600, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 601, "pattern": "attribute_call", "note": "Call via attribute access .applyMtx(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 608, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .pick_angle(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 637, "pattern": "attribute_call", "note": "Call via attribute access .__repr__(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 652, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .all(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 654, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 659, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 663, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_internal_coords", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 25, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_KDTree", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_KDTree", "lineno": 56, "pattern": "name_call_unresolved", "note": "Call to 'RandomAtom(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_KDTree", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .KDTree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .KDTree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .KDTree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .Point(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .KDTree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .neighbor_search(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .neighbor_simple_search(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .KDTree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .neighbor_search(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .Neighbor(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_KDTree", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 20, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .dedent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .dedent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .dedent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 322, "pattern": "attribute_call", "note": "Call via attribute access .dedent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .dedent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .dedent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIF2Dict", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 35, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 36, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 170, "pattern": "name_call_unresolved", "note": "Call to 'CAonly(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .set_dict(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 204, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFIO", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 27, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 72, "pattern": "name_call_unresolved", "note": "Call to 'PPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 72, "pattern": "name_call_unresolved", "note": "Call to 'CaPPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .get_name(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .get_fullname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .get_bfactor(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .get_anisou(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .get_name(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .get_fullname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .get_bfactor(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .get_anisou(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .assert_array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .get_anisou(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 211, "pattern": "name_call_unresolved", "note": "Call to 'PPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 211, "pattern": "name_call_unresolved", "note": "Call to 'CaPPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 253, "pattern": "name_call_unresolved", "note": "Call to 'PPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 253, "pattern": "name_call_unresolved", "note": "Call to 'CaPPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_id_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_id_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 325, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .disordered_select(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 367, "pattern": "name_call_unresolved", "note": "Call to 'PDBIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 368, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 372, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 373, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 391, "pattern": "name_call_unresolved", "note": "Call to 'PDBIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 402, "pattern": "name_call_unresolved", "note": "Call to 'PDBIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 411, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_MMCIFParser", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_NACCESS", "lineno": 27, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_NACCESS", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .check_call(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_NACCESS", "lineno": 63, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_NACCESS", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_NACCESS", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_NACCESS", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 32, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 52, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_parse_pdb_header", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 36, "pattern": "name_call_unresolved", "note": "Call to 'PDBIO(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 37, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 254, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 292, "pattern": "name_call_unresolved", "note": "Call to 'CAonly(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 327, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 429, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .splitlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .splitlines(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 479, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 486, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 491, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 520, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 521, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .set_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .save(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 544, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBIO", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .rmtree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .patch(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .patch(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .rmtree(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBList", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'PDBMLParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 29, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 30, "pattern": "name_call_unresolved", "note": "Call to 'PDBMLParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBMLParser", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 25, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 42, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 43, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 128, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 357, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 358, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .is_disordered(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .disordered_get_id_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 491, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 492, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .get_parent(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 625, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 626, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PDBParser", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 28, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 33, "pattern": "name_call_unresolved", "note": "Call to 'PPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 57, "pattern": "name_call_unresolved", "note": "Call to 'PPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 76, "pattern": "name_call_unresolved", "note": "Call to 'PPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .get_phi_psi_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .get_phi_psi_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .get_phi_psi_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 105, "pattern": "name_call_unresolved", "note": "Call to 'CaPPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .get_ca_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 155, "pattern": "name_call_unresolved", "note": "Call to 'CaPPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .get_sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 174, "pattern": "name_call_unresolved", "note": "Call to 'CaPPBuilder(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .build_peptides(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .get_tau_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .get_theta_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Polypeptide", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 26, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PSEA", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .StringIO(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .TemporaryDirectory(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .endwith(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 114, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_PSEA", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_PSEA", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 15, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .linspace(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .linspace(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 117, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 152, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .eye(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .linspace(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .linspace(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .sum(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_QCPSuperimposer", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .check_output(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .SkipTest(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 40, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 41, "pattern": "name_call_unresolved", "note": "Call to 'MMCIFParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 50, "pattern": "name_call_unresolved", "note": "Call to 'ResidueDepth(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 100, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_ResidueDepth", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .Path(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 30, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SASA", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SASA", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .get_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 23, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Selection", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get_models(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Selection", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 32, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 49, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 76, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 161, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .set_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .strictly_equals(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 211, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 236, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 345, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 355, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 370, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 402, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 420, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .get_full_id(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 464, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 492, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 492, "pattern": "name_call_unresolved", "note": "Call to 'Vector(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 492, "pattern": "name_call_unresolved", "note": "Call to 'Vector(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 508, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .get_list(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 533, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .int64(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 560, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .detach_child(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .center_of_mass(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_SMCRA", "lineno": 604, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 35, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 55, "pattern": "name_call_unresolved", "note": "Call to 'StructureAlignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 75, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 96, "pattern": "name_call_unresolved", "note": "Call to 'StructureAlignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 97, "pattern": "name_call_unresolved", "note": "Call to 'StructureAlignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 129, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .get_resname(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 168, "pattern": "name_call_unresolved", "note": "Call to 'StructureAlignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 171, "pattern": "name_call_unresolved", "note": "Call to 'StructureAlignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 201, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 211, "pattern": "name_call_unresolved", "note": "Call to 'StructureAlignment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_StructureAlignment", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .astype(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .transform(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 43, "pattern": "name_call_unresolved", "note": "Call to 'Superimposer(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .set_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .identity(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .apply(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_Superimposer", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 47, "pattern": "name_call_unresolved", "note": "Call to 'calc_angle(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 48, "pattern": "name_call_unresolved", "note": "Call to 'calc_dihedral(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 96, "pattern": "name_call_unresolved", "note": "Call to 'refmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 106, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .transpose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 122, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 130, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 138, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 139, "pattern": "name_call_unresolved", "note": "Call to 'm2rotaxis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 147, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 148, "pattern": "name_call_unresolved", "note": "Call to 'm2rotaxis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 156, "pattern": "name_call_unresolved", "note": "Call to 'rotmat(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 157, "pattern": "name_call_unresolved", "note": "Call to 'm2rotaxis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 166, "pattern": "name_call_unresolved", "note": "Call to 'rotaxis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 167, "pattern": "name_call_unresolved", "note": "Call to 'm2rotaxis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PDB_vectors", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .allclose(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .sqrt(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .radians(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .radians(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .empty(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .dot(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .array_equal(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .get_array(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PDB_vectors", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 373, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phd", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_phenotype", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 97, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .get_times(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .get_times(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .get_signals(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .get_signals(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 303, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .get_times(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .get_times(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .get_signals(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .get_signals(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 318, "pattern": "self_method_not_found", "note": "self.assertWarnsRegex(...) not found in class 'TestPhenoMicro' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_phenotype", "lineno": 326, "pattern": "self_method_not_found", "note": "self.assertWarnsRegex(...) not found in class 'TestPhenoMicro' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_phenotype", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_phenotype_fit", "lineno": 28, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_phenotype_fit", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .load(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_phenotype_fit", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .count_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 98, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .convert(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 135, "pattern": "attribute_call", "note": "Call via attribute access .convert(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .convert(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 144, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .mktemp(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .count_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 211, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .count_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .root_with_outgroup(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .root_at_midpoint(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .splitlines(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 315, "pattern": "attribute_call", "note": "Call via attribute access .find_any(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 352, "pattern": "attribute_call", "note": "Call via attribute access .find_elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 356, "pattern": "attribute_call", "note": "Call via attribute access .get_path(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 365, "pattern": "attribute_call", "note": "Call via attribute access .trace(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .trace(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 388, "pattern": "attribute_call", "note": "Call via attribute access .common_ancestor(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .distance(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .is_bifurcating(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 424, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 427, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .is_monophyletic(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 435, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .total_branch_length(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .collapse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .collapse_all(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 459, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 462, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 465, "pattern": "attribute_call", "note": "Call via attribute access .collapse_all(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 466, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 468, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 480, "pattern": "attribute_call", "note": "Call via attribute access .ladderize(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .ladderize(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .prune(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .prune(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .prune(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 519, "pattern": "attribute_call", "note": "Call via attribute access .prune(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 530, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 531, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .get_nonterminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .assertTrue(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 514, "pattern": "name_call_unresolved", "note": "Call to 'cls(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_PhyloXML", "lineno": 516, "pattern": "attribute_call", "note": "Call via attribute access .system(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .to_phylogeny(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 649, "pattern": "attribute_call", "note": "Call via attribute access .to_phyloxml_container(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .Sequence(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .Accession(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 661, "pattern": "attribute_call", "note": "Call via attribute access .MolSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 664, "pattern": "attribute_call", "note": "Call via attribute access .Annotation(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .Annotation(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 667, "pattern": "attribute_call", "note": "Call via attribute access .DomainArchitecture(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .ProteinDomain(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 681, "pattern": "attribute_call", "note": "Call via attribute access .to_seqrecord(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access .from_seqrecord(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 689, "pattern": "attribute_call", "note": "Call via attribute access .to_alignment(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 694, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 695, "pattern": "attribute_call", "note": "Call via attribute access .from_seqrecord(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .to_alignment(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 714, "pattern": "attribute_call", "note": "Call via attribute access .from_seqrecord(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 781, "pattern": "attribute_call", "note": "Call via attribute access .Confidence(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 782, "pattern": "attribute_call", "note": "Call via attribute access .Taxonomy(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 784, "pattern": "attribute_call", "note": "Call via attribute access .Clade(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 788, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 790, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 798, "pattern": "attribute_call", "note": "Call via attribute access .Phylogeny(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 809, "pattern": "attribute_call", "note": "Call via attribute access .BranchColor(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 810, "pattern": "attribute_call", "note": "Call via attribute access .to_hex(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 811, "pattern": "attribute_call", "note": "Call via attribute access .BranchColor(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 812, "pattern": "attribute_call", "note": "Call via attribute access .to_hex(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .BranchColor(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .to_hex(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 821, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 822, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 824, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_PhyloXML", "lineno": 825, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 19, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .assertNotIn(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .assertNotIn(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .assertEqual(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_CDAO", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Phylo_igraph", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .find_clades(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .to_igraph(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .to_igraph(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .vcount(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .ecount(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .vcount(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .to_igraph(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .vcount(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .ecount(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .vcount(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_igraph", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 18, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .use(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 31, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .ioff(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .ioff(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .ioff(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .draw(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .draw_ascii(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .draw_ascii(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_matplotlib", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_networkx", "lineno": 17, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Phylo_networkx", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_networkx", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .to_networkx(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_networkx", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .nodes(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_networkx", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_networkx", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .parse(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .get_terminals(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Phylo_NeXML", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .skip_population(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .skip_population(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .NamedTemporaryFile(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .remove_loci_by_position(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .remove_locus_by_position(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .remove_locus_by_name(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .remove_loci_by_name(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .remove_population(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .remove_locus_by_name(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .remove_locus_by_position(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PopGen_GenePop_nodepend", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .get_charge(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .get_radius(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .get_occupancy(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .get_bfactor(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .get_coord(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .get_charge(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .get_charge(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .get_radius(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .get_radius(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .get_radius(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 146, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .get_residues(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .get_atoms(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_PQR", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 345, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 558, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 883, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 956, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 1042, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 1360, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_prodoc", "lineno": 1361, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 17, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 2531, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 2579, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 2727, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 3165, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 3337, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 3496, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_prosite", "lineno": 3497, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 37, "pattern": "attribute_call", "note": "Call via attribute access .count_amino_acids(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .molecular_weight(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .molecular_weight(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .aromaticity(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .instability_index(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .flexibility(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .isoelectric_point(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .charge_at_pH(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .secondary_structure_fraction(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .protein_scale(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .gravy(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .gravy(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .molar_extinction_coefficient(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 253, "pattern": "attribute_call", "note": "Call via attribute access .molar_extinction_coefficient(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_ProtParam", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 24, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_RCSBFormats", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 40, "pattern": "name_call_unresolved", "note": "Call to 'PDBParser(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_RCSBFormats", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .get_structure(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .get_models(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .get_models(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .get_chains(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_RCSBFormats", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 46, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 47, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 48, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 49, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 58, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 61, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 66, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 68, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 68, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 69, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 70, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 70, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 71, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .circularise(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 75, "pattern": "attribute_call", "note": "Call via attribute access .linearise(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .to_circular(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .to_linear(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .is_linear(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .cut_once(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 104, "pattern": "attribute_call", "note": "Call via attribute access .is_3overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .is_defined(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .is_ambiguous(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 108, "pattern": "attribute_call", "note": "Call via attribute access .is_unknown(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .is_palindromic(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 110, "pattern": "attribute_call", "note": "Call via attribute access .is_comm(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .supplier_list(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 112, "pattern": "attribute_call", "note": "Call via attribute access .elucidate(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 114, "pattern": "attribute_call", "note": "Call via attribute access .characteristic(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .catalyze(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .is_3overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 131, "pattern": "attribute_call", "note": "Call via attribute access .catalyze(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .is_blunt(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .is_3overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .is_5overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 139, "pattern": "attribute_call", "note": "Call via attribute access .overhang(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .catalyze(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .is_palindromic(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .is_defined(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .is_ambiguous(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 151, "pattern": "attribute_call", "note": "Call via attribute access .is_unknown(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 152, "pattern": "attribute_call", "note": "Call via attribute access .elucidate(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 156, "pattern": "attribute_call", "note": "Call via attribute access .elucidate(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .is_defined(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .is_ambiguous(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .is_unknown(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .is_comm(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .suppliers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .supplier_list(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .buffers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .catalyse(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 184, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 187, "pattern": "name_call_unresolved", "note": "Call to 'FormattedSeq(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 207, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 212, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 215, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 218, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .isoschizomers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .elucidate(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .elucidate(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .elucidate(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .is_isoschizomer(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 247, "pattern": "attribute_call", "note": "Call via attribute access .is_equischizomer(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .is_neoschizomer(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .equischizomers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .neoschizomers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .isoschizomers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .compatible_end(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 292, "pattern": "attribute_call", "note": "Call via attribute access .compatible_end(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .make_format(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .print_as(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .print_as(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .print_as(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 433, "pattern": "name_call_unresolved", "note": "Call to 'Analysis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .full(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 437, "pattern": "attribute_call", "note": "Call via attribute access .change(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 438, "pattern": "attribute_call", "note": "Call via attribute access .change(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .full(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .full(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .change(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 450, "pattern": "name_call_unresolved", "note": "Call to 'RestrictionBatch(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 451, "pattern": "attribute_call", "note": "Call via attribute access .suppl_codes(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .is_restriction(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 453, "pattern": "name_call_unresolved", "note": "Call to 'RestrictionBatch(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .add(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .elements(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .as_string(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 494, "pattern": "name_call_unresolved", "note": "Call to 'RestrictionBatch(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .current_suppliers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .add_supplier(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 504, "pattern": "name_call_unresolved", "note": "Call to 'RestrictionBatch(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .search(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 530, "pattern": "name_call_unresolved", "note": "Call to 'RestrictionBatch(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 531, "pattern": "name_call_unresolved", "note": "Call to 'Analysis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 533, "pattern": "attribute_call", "note": "Call via attribute access .blunt(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 534, "pattern": "attribute_call", "note": "Call via attribute access .full(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 536, "pattern": "attribute_call", "note": "Call via attribute access .with_sites(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .without_site(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .with_site_size(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 541, "pattern": "attribute_call", "note": "Call via attribute access .overhang5(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .overhang3(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 545, "pattern": "attribute_call", "note": "Call via attribute access .defined(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .with_N_sites(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .only_between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 552, "pattern": "attribute_call", "note": "Call via attribute access .only_between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .only_between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 554, "pattern": "attribute_call", "note": "Call via attribute access .only_between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .only_between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 557, "pattern": "attribute_call", "note": "Call via attribute access .only_outside(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .with_name(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 560, "pattern": "attribute_call", "note": "Call via attribute access .with_name(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access ._boundaries(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 563, "pattern": "attribute_call", "note": "Call via attribute access ._boundaries(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access ._boundaries(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access ._boundaries(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 570, "pattern": "name_call_unresolved", "note": "Call to 'RestrictionBatch(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 571, "pattern": "name_call_unresolved", "note": "Call to 'Analysis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .show_only_between(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .outside(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .do_not_cut(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 590, "pattern": "self_method_not_found", "note": "self.StringIO(...) not found in class 'TestPrintOutputs' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_Restriction", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .suppliers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 594, "pattern": "attribute_call", "note": "Call via attribute access .suppliers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .all_suppliers(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 598, "pattern": "attribute_call", "note": "Call via attribute access .show_codes(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 599, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 604, "pattern": "self_method_not_found", "note": "self.StringIO(...) not found in class 'TestPrintOutputs' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_Restriction", "lineno": 608, "pattern": "name_call_unresolved", "note": "Call to 'Analysis(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Restriction", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .print_that(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 610, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Restriction", "lineno": 630, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .getSeqBySid(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .getSeqBySid(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .getDomainBySid(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .getSeq(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .getAstralDomainsFromFile(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .domainsClusteredById(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 50, "pattern": "attribute_call", "note": "Call via attribute access .domainsClusteredByEv(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Astral", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Cla", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Des", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Des", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Des", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Des", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Dom", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Dom", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Dom", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Dom", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Hie", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Hie", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Hie", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Hie", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Raf", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Raf", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Raf", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Raf", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Raf", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Residues", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Residues", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 116, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 128, "pattern": "attribute_call", "note": "Call via attribute access .getAscendent(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .getDescendents(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .getDescendents(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .getDescendents(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SCOP_Scop", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_tab", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_tab", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_tab", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_tab", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 26, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 41, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 56, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 66, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 80, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 100, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 120, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 129, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 134, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 139, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 144, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 149, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 154, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 159, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 164, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 169, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 173, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_tab_index", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 3988, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 3989, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 4018, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 4019, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 4048, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 4049, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 4066, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml", "lineno": 4067, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 42, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastXmlRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 207, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastXmlRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 467, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastXmlRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 727, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'BlastXmlRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 736, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastXmlIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 741, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastXmlIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 746, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastXmlIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 751, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastXmlIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 756, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastXmlIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 761, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlastXmlIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blast_xml_index", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1077, "pattern": "attribute_call", "note": "Call via attribute access .test_psl_34_001(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1083, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1084, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1087, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1088, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1091, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1092, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1098, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1101, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1106, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1109, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1114, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1115, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1118, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1119, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1122, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1123, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1124, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1125, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1128, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1129, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1132, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1133, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1134, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1135, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1138, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1141, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1144, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1147, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1151, "pattern": "attribute_call", "note": "Call via attribute access .test_psl_34_002(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1155, "pattern": "attribute_call", "note": "Call via attribute access .test_psl_34_003(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1161, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1162, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1165, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1166, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1169, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1170, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1174, "pattern": "attribute_call", "note": "Call via attribute access .test_psl_34_004(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1180, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1183, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1188, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1191, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1196, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1197, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1200, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1201, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1204, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1205, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1206, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1207, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1210, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1211, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1214, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1215, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1216, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1217, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1220, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1223, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1226, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1229, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1233, "pattern": "attribute_call", "note": "Call via attribute access .test_psl_34_005(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1239, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1240, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1243, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1244, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1247, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1248, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1254, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1257, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1262, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1265, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1270, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1271, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1274, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1275, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1278, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1279, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1280, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1281, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1284, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1285, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1288, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1289, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1290, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1291, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1294, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1297, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1300, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1303, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .test_psl_35_002(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1313, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1316, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1319, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1321, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1322, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1325, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'BlatPslxCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1329, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl", "lineno": 1330, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 20, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 25, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 30, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 35, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 40, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 45, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 50, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 55, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 60, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 65, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'BlatPslIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_blat_psl_index", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate", "lineno": 2674, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate", "lineno": 2675, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_text_index", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_text_index", "lineno": 20, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'ExonerateTextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_exonerate_text_index", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_text_index", "lineno": 25, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'ExonerateTextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_exonerate_text_index", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_text_index", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_vulgar_index", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_vulgar_index", "lineno": 20, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'ExonerateVulgarIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_exonerate_vulgar_index", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_vulgar_index", "lineno": 25, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'ExonerateVulgarIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_exonerate_vulgar_index", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_exonerate_vulgar_index", "lineno": 30, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10", "lineno": 3136, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10", "lineno": 3137, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 20, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 25, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 29, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 30, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 34, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 35, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 40, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 45, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 50, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 55, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'FastaM10IndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_fasta_m10_index", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hhsuite2_text", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hhsuite2_text", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hhsuite2_text", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 21, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 141, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 538, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 199, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer2TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 255, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer2TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 287, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer2TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 356, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer2TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 477, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer2TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 485, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 486, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer2TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 491, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer2TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 496, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer2TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 501, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer2TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 506, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer2TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 510, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer2_text_index", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab", "lineno": 647, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 23, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'HmmerDomtabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 31, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'HmmerDomtabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 43, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'HmmerDomtabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 51, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'HmmerDomtabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 58, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'HmmerDomtabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 63, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'HmmerDomtabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 68, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'HmmerDomtabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 73, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'HmmerDomtabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 78, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'HmmerDomtabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_domtab_index", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 23, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 31, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 35, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 42, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 50, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 59, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 64, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 68, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 69, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 74, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_tab_index", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_text", "lineno": 20, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_text", "lineno": 2808, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_text", "lineno": 2809, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 60, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 122, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 238, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 300, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'Hmmer3TextRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 309, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 314, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 319, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 324, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 329, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 334, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 338, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_hmmer3_text_index", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 387, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 443, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 28, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 36, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 43, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 51, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 58, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 64, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 65, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'InfernalTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 70, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'InfernalTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 75, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'InfernalTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 80, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'InfernalTabIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_tab_index", "lineno": 85, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 38, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 581, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 758, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 847, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 918, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 1054, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text", "lineno": 1055, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 23, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 86, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 136, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 343, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 504, "pattern": "self_method_not_found", "note": "self.check_raw(...) not found in class 'InfernalTabRawCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 513, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 518, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 522, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 523, "pattern": "self_method_not_found", "note": "self.check_index(...) not found in class 'Hmmer3TextIndexCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_infernal_text_index", "lineno": 528, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_interproscan_xml", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_interproscan_xml", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_interproscan_xml", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 30, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 31, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 32, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 33, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 34, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 35, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 36, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 37, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 38, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 39, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 40, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 42, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 43, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 44, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 45, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 46, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 47, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 48, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 49, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 50, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 52, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 53, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 54, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 55, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 56, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 61, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .dump(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 71, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'QueryResultCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 84, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 90, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 96, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 166, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 179, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 195, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 209, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 227, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 263, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 304, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 320, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 354, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 389, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 390, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 391, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 392, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 392, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 393, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 393, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 394, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .absorb(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 440, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 440, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 440, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .absorb(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 476, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 485, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .hit_filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 499, "pattern": "name_call_unresolved", "note": "Call to 'filter_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .hit_filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 508, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'QueryResultCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 518, "pattern": "attribute_call", "note": "Call via attribute access .hit_filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 532, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 539, "pattern": "attribute_call", "note": "Call via attribute access .hit_map(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .hit_map(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 552, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'QueryResultCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 565, "pattern": "attribute_call", "note": "Call via attribute access .hsp_filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .hsp_filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 581, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'QueryResultCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .hsp_filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 610, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .hsp_map(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .hsp_map(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 647, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'QueryResultCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 667, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 675, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 683, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 692, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 703, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 704, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 710, "pattern": "name_call_unresolved", "note": "Call to 'QueryResult(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 730, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 745, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 754, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 762, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 769, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 776, "pattern": "attribute_call", "note": "Call via attribute access .dump(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 778, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'HitCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 782, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 790, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 798, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access ._validate_hsp(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 923, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 924, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 925, "pattern": "name_call_unresolved", "note": "Call to 'Hit(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 925, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 972, "pattern": "attribute_call", "note": "Call via attribute access .filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 975, "pattern": "name_call_unresolved", "note": "Call to 'filter_func(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 984, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'HitCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .filter(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 999, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1017, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1040, "pattern": "attribute_call", "note": "Call via attribute access .map(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1041, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'HitCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 1049, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1050, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1057, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1065, "pattern": "attribute_call", "note": "Call via attribute access .sort(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1074, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1079, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1138, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1143, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1148, "pattern": "name_call_unresolved", "note": "Call to 'HSP(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1153, "pattern": "attribute_call", "note": "Call via attribute access .dump(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1154, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1154, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1155, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'HSPMultipleFragmentCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 1168, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1176, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1177, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1191, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1283, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1287, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1349, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1356, "pattern": "attribute_call", "note": "Call via attribute access .dump(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1357, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1357, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1358, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'HSPFragmentCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_model", "lineno": 1365, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1417, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1475, "pattern": "name_call_unresolved", "note": "Call to 'HSPFragment(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SearchIO_model", "lineno": 1596, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_model", "lineno": 1597, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 19, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 29, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'WriteCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_write", "lineno": 38, "pattern": "self_method_not_found", "note": "self.compare_search_obj(...) not found in class 'WriteCases' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SearchIO_write", "lineno": 43, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 59, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 204, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 210, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 216, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SearchIO_write", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 32, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 177, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 180, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 217, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .__radd__(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 271, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 272, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 284, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 293, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 295, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 297, "pattern": "attribute_call", "note": "Call via attribute access .removeprefix(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 298, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .removeprefix(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .removesuffix(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 331, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 397, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .intc(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 490, "pattern": "attribute_call", "note": "Call via attribute access .intc(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 509, "pattern": "attribute_call", "note": "Call via attribute access .intc(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 633, "pattern": "attribute_call", "note": "Call via attribute access .__radd__(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 640, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 643, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 700, "pattern": "attribute_call", "note": "Call via attribute access .intc(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 717, "pattern": "attribute_call", "note": "Call via attribute access .insert(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 721, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 733, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 736, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 741, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 749, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 763, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 767, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 773, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 781, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 785, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 810, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 814, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 832, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 847, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 855, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 855, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 857, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 857, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 904, "pattern": "attribute_call", "note": "Call via attribute access .copy(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 905, "pattern": "attribute_call", "note": "Call via attribute access .pop(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 913, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 916, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 919, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 923, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 929, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 932, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 935, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 939, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 983, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 984, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 987, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 988, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 990, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 991, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 991, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 994, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 995, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1003, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1003, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1015, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1022, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1033, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1043, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1044, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1057, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1109, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1124, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1130, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1199, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1200, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1203, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1204, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1251, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1256, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1261, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1262, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1268, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1269, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1274, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1277, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1282, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1289, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1294, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1299, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1300, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1306, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1307, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1312, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1315, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1320, "pattern": "name_call_unresolved", "note": "Call to 'dir(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_seq", "lineno": 1357, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_seq", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .loads(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .dumps(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 334, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 340, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 351, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 360, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 381, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqFeature", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 62, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 67, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 132, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqIOConverterTestBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 137, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 140, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqIOConverterTestBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 140, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 150, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'SeqIOConverterTestBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 152, "pattern": "self_method_not_found", "note": "self.write_records(...) not found in class 'SeqIOConverterTestBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 155, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'SeqIOConverterTestBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 161, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqIOConverterTestBaseClass' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 183, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .readlines(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .get_alignment_length(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 213, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 244, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 253, "pattern": "self_method_not_found", "note": "self.addTypeEqualityFunc(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 257, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 258, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 259, "pattern": "self_method_not_found", "note": "self.assertIsNotNone(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 260, "pattern": "self_method_not_found", "note": "self.assertIsNotNone(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 261, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 262, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 263, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 264, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 275, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 280, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 316, "pattern": "attribute_call", "note": "Call via attribute access .deepcopy(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .enter_context(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .enter_context(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .enter_context(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 344, "pattern": "self_method_not_found", "note": "self.fail(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 366, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 369, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 373, "pattern": "self_method_not_found", "note": "self.assertTrue(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 377, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 387, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 400, "pattern": "self_method_not_found", "note": "self.fail(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 402, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 406, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 411, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 415, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 415, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 417, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 419, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 423, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 429, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 435, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 436, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 450, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 452, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 458, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 460, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 462, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 474, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 475, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 479, "pattern": "self_method_not_found", "note": "self.fail(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 498, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 510, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 520, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 531, "pattern": "self_method_not_found", "note": "self.assertIsNotNone(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 535, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 549, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 570, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 576, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 579, "pattern": "self_method_not_found", "note": "self.failureException(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 581, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 582, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 583, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 584, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 585, "pattern": "self_method_not_found", "note": "self.assertTrue(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 591, "pattern": "self_method_not_found", "note": "self.assertTrue(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 592, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 593, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 595, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 601, "pattern": "self_method_not_found", "note": "self.assertTrue(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 602, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 603, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 605, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 612, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 613, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 614, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 615, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 620, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 621, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 625, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 629, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 630, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 635, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 637, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 643, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 649, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 650, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 652, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .reverse(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 2637, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 2641, "pattern": "self_method_not_found", "note": "self.assertRegex(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 2646, "pattern": "self_method_not_found", "note": "self.assertRegex(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 3273, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 3276, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 3278, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 3280, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 3291, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 3293, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 3296, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 3298, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 3299, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 3300, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5858, "pattern": "self_method_not_found", "note": "self.assertRaisesRegex(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5862, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5865, "pattern": "self_method_not_found", "note": "self.assertRaisesRegex(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5871, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5878, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5881, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5882, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 5888, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5900, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5906, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'TestSeqIO' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO", "lineno": 5906, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 5910, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO", "lineno": 5911, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_AbiIO", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_AbiIO", "lineno": 240, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_AbiIO", "lineno": 248, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_AbiIO", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_AbiIO", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_AbiIO", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 100, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_FastaIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 65, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 66, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 150, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 175, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 188, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 245, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'GenBankLocations' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 246, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'GenBankLocations' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 247, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'GenBankLocations' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 249, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'GenBankLocations' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 251, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'GenBankLocations' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 303, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 306, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 307, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 310, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 311, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 314, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 315, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 318, "pattern": "self_method_not_found", "note": "self.assertIsInstance(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 319, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 321, "pattern": "self_method_not_found", "note": "self.assertRaises(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 330, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 331, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 332, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 333, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 335, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 344, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 345, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 347, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 348, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 350, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 350, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 352, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 353, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 354, "pattern": "self_method_not_found", "note": "self.assertLessEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 362, "pattern": "self_method_not_found", "note": "self.assertIsNone(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 405, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 412, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'SeqFeatureExtractionWritingReading' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 575, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 576, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 577, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 578, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 579, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 582, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 583, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 584, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 585, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 586, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 592, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 593, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 594, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 595, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 604, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 605, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 606, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 607, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 613, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 613, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 615, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 619, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 625, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 626, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 627, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 628, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 631, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 632, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 633, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 634, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 641, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 642, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 644, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 647, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 648, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 650, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 652, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 653, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 655, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 656, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 665, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 666, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 667, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 668, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 670, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 671, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 673, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 673, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 674, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 675, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 680, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 683, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 684, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 687, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 687, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 689, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 694, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 697, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 697, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 698, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 698, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 700, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 701, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 706, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 709, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 710, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 712, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 712, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 713, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 714, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 715, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 724, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 725, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 726, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 729, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 731, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 733, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 735, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 749, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 753, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 753, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 754, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 755, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 758, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 760, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 762, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 764, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 765, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 772, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 775, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 775, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 776, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 777, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 779, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 781, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 782, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 783, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 785, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 786, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 796, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 800, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 800, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 801, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 802, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 805, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 806, "pattern": "attribute_call", "note": "Call via attribute access ._flip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 807, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 809, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 810, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 818, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 819, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 820, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 821, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 822, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 823, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 829, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 830, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 831, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 832, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 833, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 834, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 837, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 838, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 839, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 840, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 841, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 842, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 845, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 846, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 847, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 848, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 849, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 850, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 856, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 857, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 858, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 859, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 860, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 861, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 864, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 865, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 866, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 867, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 868, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 869, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 877, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 878, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 879, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 880, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 881, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 882, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 888, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 889, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 890, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 891, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 892, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 893, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 896, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 897, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 898, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 899, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 900, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 901, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 904, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 905, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 906, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 907, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 908, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 909, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 915, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 916, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 917, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 918, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 919, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 923, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 924, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 925, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 926, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 927, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 928, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 937, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 938, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 939, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 942, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 943, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 944, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 949, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 952, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 953, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 957, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 958, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 959, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 963, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 964, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 965, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 968, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 969, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 970, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 974, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 975, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 976, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 977, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 978, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 979, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 984, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 987, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 988, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 991, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 992, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 993, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 997, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 998, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 999, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1000, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1001, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1002, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1013, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1014, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1015, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1018, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1019, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1020, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1030, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1031, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1032, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1035, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1036, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1037, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1043, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1044, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1045, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1048, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1049, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1050, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1056, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1057, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1058, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1059, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1060, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1070, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1071, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1072, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1073, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1074, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1075, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1081, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1082, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1083, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1084, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1085, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1086, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1091, "pattern": "attribute_call", "note": "Call via attribute access .setlocale(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1099, "pattern": "attribute_call", "note": "Call via attribute access .setlocale(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1101, "pattern": "attribute_call", "note": "Call via attribute access .strptime(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1107, "pattern": "attribute_call", "note": "Call via attribute access .setlocale(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .date(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1111, "pattern": "attribute_call", "note": "Call via attribute access .strptime(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1122, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1123, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1124, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1125, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1125, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1126, "pattern": "self_method_not_found", "note": "self.assertNotIn(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1126, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1132, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1134, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1135, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1136, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1137, "pattern": "self_method_not_found", "note": "self.assertIn(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1137, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1138, "pattern": "self_method_not_found", "note": "self.assertNotIn(...) not found in class 'FeatureWriting' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1138, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1155, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1156, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1157, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1158, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1160, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1168, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'NC_000932' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1170, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_000932' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1175, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1176, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_000932' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1178, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1181, "pattern": "self_method_not_found", "note": "self.fail(...) not found in class 'NC_000932' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1183, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_000932' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1185, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_000932' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1215, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_005816' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1217, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1224, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1226, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1228, "pattern": "self_method_not_found", "note": "self.assertTrue(...) not found in class 'NC_005816' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1253, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_005816' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1257, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1258, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_005816' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1259, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'NC_005816' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1272, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1275, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestWriteRead' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_features", "lineno": 1279, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1283, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1287, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1291, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1295, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1299, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1303, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1307, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1311, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1315, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1319, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1321, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1322, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1327, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1332, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1336, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1341, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1346, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1350, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1354, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1358, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1362, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1366, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1370, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1374, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_features", "lineno": 1375, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 18, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 63, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 79, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 90, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gck", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gfa", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Gfa", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 31, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .connect(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .fetchall(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .fetchone(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .execute(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 56, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 76, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .Thread(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .start(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 194, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 197, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 200, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 208, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 220, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 222, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 224, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 241, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 251, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 265, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 305, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .getcwd(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .relpath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 317, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 328, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 329, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 401, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 404, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 417, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 423, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 426, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 439, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'IndexDictTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_index", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 445, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 463, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 492, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 512, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'IndexDictTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_index", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 520, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 529, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 546, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 553, "pattern": "attribute_call", "note": "Call via attribute access .with_suffix(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 555, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 556, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 562, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 569, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 570, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 575, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 576, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 577, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 584, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 585, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 586, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'IndexDictTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_index", "lineno": 587, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 588, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 591, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 595, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 609, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 614, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 615, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 616, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 618, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .get_raw(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 630, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'IndexDictTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_index", "lineno": 634, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 639, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 645, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 650, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 651, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 669, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'IndexDictTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_index", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 716, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 725, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 734, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 743, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 761, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 803, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_index", "lineno": 804, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 113, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 116, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'TestEmblRewrite' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 120, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 126, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 132, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 150, "pattern": "self_method_not_found", "note": "self.check_conversion(...) not found in class 'ConvertTestsInsdc' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Insdc", "lineno": 155, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .flush(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_NibIO", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 44, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 61, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .simple(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_online", "lineno": 103, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 21, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 121, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 158, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 159, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 160, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 171, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 190, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_PdbIO", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 36, "pattern": "attribute_call", "note": "Call via attribute access .compare_record(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 45, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 46, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 57, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 167, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 250, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 275, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 282, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 290, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 290, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 296, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 304, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 318, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 319, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 328, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 329, "pattern": "self_method_not_found", "note": "self.assertEqual(...) not found in class 'TestQual' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 330, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 362, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 383, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 389, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 393, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 394, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 400, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 407, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 414, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 419, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 425, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 438, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'TestWriteRead' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 444, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 447, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestWriteRead' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 515, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 517, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 518, "pattern": "self_method_not_found", "note": "self.compare_records(...) not found in class 'TestWriteRead' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 527, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 543, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 547, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 551, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 559, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 574, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 580, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 596, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 612, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 628, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 660, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 677, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 694, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 711, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 728, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 745, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 762, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 779, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 796, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 813, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 871, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 878, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 879, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 884, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 895, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 902, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 910, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 914, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 920, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 928, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 935, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 947, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 960, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 961, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 962, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 970, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 972, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 973, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 974, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1012, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1019, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1029, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1036, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1039, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1039, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1050, "pattern": "self_method_not_found", "note": "self.write_records(...) not found in class 'TestsConverter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1110, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1119, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_QualityIO", "lineno": 1120, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SeqXML", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SeqXML", "lineno": 201, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SeqXML", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SeqXML", "lineno": 203, "pattern": "attribute_call", "note": "Call via attribute access .decode(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SeqXML", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SeqXML", "lineno": 256, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 83, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 109, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 179, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 323, "pattern": "attribute_call", "note": "Call via attribute access .open(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 505, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 535, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 540, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 564, "pattern": "attribute_call", "note": "Call via attribute access .tell(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 566, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 567, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SffIO", "lineno": 573, "pattern": "attribute_call", "note": "Call via attribute access .assertRaises(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .datetime(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 74, "pattern": "attribute_call", "note": "Call via attribute access .datetime(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .datetime(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 145, "pattern": "attribute_call", "note": "Call via attribute access .datetime(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 236, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 306, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 324, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 332, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 341, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .extend(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 353, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_SnapGene", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 84, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 372, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 375, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 376, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 379, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 382, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 386, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 390, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 395, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 408, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 409, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 412, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 416, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 418, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 421, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 422, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 428, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 430, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 439, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 446, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 447, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 449, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 452, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 454, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 457, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 460, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 464, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 467, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 473, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 477, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 483, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 487, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 494, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 499, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 501, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 502, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 511, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 513, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 514, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 525, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_TwoBitIO", "lineno": 526, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 25, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 60, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 476, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 512, "pattern": "attribute_call", "note": "Call via attribute access .get(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 537, "pattern": "attribute_call", "note": "Call via attribute access .intersection(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 549, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .rstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 557, "pattern": "self_method_not_found", "note": "self.compare_reference(...) not found in class 'ParserTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 629, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 635, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 644, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 652, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'ParserTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 656, "pattern": "self_method_not_found", "note": "self.compare_record(...) not found in class 'ParserTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 657, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 658, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 669, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_UniprotIO", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 26, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 27, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .issubset(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 184, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 244, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'WriterTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_write", "lineno": 252, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 271, "pattern": "self_method_not_found", "note": "self.get_mode(...) not found in class 'WriterTests' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_write", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 285, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 309, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_write", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 102, "pattern": "attribute_call", "note": "Call via attribute access .values(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 149, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 157, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .seek(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .append(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 207, "pattern": "self_method_not_found", "note": "self.assertWarnsRegex(...) not found in class 'TestXdnaWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 213, "pattern": "self_method_not_found", "note": "self.assertWarnsRegex(...) not found in class 'TestXdnaWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 224, "pattern": "self_method_not_found", "note": "self.assertWarnsRegex(...) not found in class 'TestXdnaWriter' or its resolved inheritance chain (D-004), and not a recognized stdlib-base method." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqIO_Xdna", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 214, "pattern": "attribute_call", "note": "Call via attribute access .format(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 238, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 267, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 313, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 592, "pattern": "attribute_call", "note": "Call via attribute access .__hash__(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 611, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 622, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 646, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 669, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqRecord", "lineno": 670, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 58, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 81, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 403, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 431, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SeqUtils", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 162, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .count(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 169, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 192, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 199, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 223, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 228, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 229, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 231, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 232, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 235, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 243, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 246, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 274, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 275, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 277, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 278, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 279, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 281, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 282, "pattern": "attribute_call", "note": "Call via attribute access .count_overlap(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 294, "pattern": "attribute_call", "note": "Call via attribute access .rfind(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 301, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 304, "pattern": "attribute_call", "note": "Call via attribute access .index(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 311, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 314, "pattern": "attribute_call", "note": "Call via attribute access .rindex(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 321, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 333, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 336, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 339, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 342, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 343, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 349, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 359, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 361, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 367, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 450, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 456, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .rsplit(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 472, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 474, "pattern": "attribute_call", "note": "Call via attribute access .upper(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 482, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .lower(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 493, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 495, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 496, "pattern": "attribute_call", "note": "Call via attribute access .isupper(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 504, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 506, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .islower(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 542, "pattern": "attribute_call", "note": "Call via attribute access .encode(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 548, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 550, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 561, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 688, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 690, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 693, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 696, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 697, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 699, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 702, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 705, "pattern": "attribute_call", "note": "Call via attribute access .complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 708, "pattern": "attribute_call", "note": "Call via attribute access .complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 718, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 720, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 723, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 726, "pattern": "attribute_call", "note": "Call via attribute access .maketrans(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 727, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 729, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 732, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 735, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 738, "pattern": "attribute_call", "note": "Call via attribute access .reverse_complement_rna(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 747, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 752, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 754, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 757, "pattern": "attribute_call", "note": "Call via attribute access .transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 766, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 768, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 770, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 773, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 783, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 785, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 785, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 789, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 791, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 842, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 843, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 844, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 845, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 846, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 847, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 848, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 849, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 850, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 851, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 852, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 853, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 869, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 870, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 875, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 880, "pattern": "attribute_call", "note": "Call via attribute access .translate(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 888, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 915, "pattern": "attribute_call", "note": "Call via attribute access .array(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 947, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 951, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 955, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 980, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 981, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1000, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1003, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1004, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1020, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1021, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1057, "pattern": "attribute_call", "note": "Call via attribute access .extract(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1834, "pattern": "attribute_call", "note": "Call via attribute access .back_transcribe(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1839, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Seq_objs", "lineno": 1840, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 20, "pattern": "name_call_unresolved", "note": "Call to 'MissingPythonDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 48, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .set(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 55, "pattern": "attribute_call", "note": "Call via attribute access .get_init_rms(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 99, "pattern": "attribute_call", "note": "Call via attribute access .get_rms(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .get_rotran(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 122, "pattern": "attribute_call", "note": "Call via attribute access .get_transformed(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 129, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SVDSuperimposer", "lineno": 130, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 22, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 524, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 941, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 1546, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 1694, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 1819, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 1948, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 2346, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 5238, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 5348, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 5756, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6338, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6431, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6526, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6656, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6737, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6754, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6781, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6787, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_SwissProt", "lineno": 6788, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 24, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 69, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 70, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 77, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 148, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 154, "pattern": "attribute_call", "note": "Call via attribute access .issuperset(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 164, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 186, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 187, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 195, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 196, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 205, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 206, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 226, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 263, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 312, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 326, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 346, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 347, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 354, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 363, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 364, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 370, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 371, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 377, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 378, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 384, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 385, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 391, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 392, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 398, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 399, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 405, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 406, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 432, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 433, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 434, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 440, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 441, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 442, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 448, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 458, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 471, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 619, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_TogoWS", "lineno": 620, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_translate", "lineno": 91, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_translate", "lineno": 92, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 28, "pattern": "attribute_call", "note": "Call via attribute access .mkdtemp(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .splitlines(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .getvalue(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 136, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 138, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 185, "pattern": "attribute_call", "note": "Call via attribute access .get_distance(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 189, "pattern": "attribute_call", "note": "Call via attribute access .get_distance(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 198, "pattern": "attribute_call", "note": "Call via attribute access .get_distance(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 202, "pattern": "attribute_call", "note": "Call via attribute access .get_distance(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 221, "pattern": "attribute_call", "note": "Call via attribute access .upgma(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 225, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 230, "pattern": "attribute_call", "note": "Call via attribute access .upgma(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 234, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 237, "pattern": "attribute_call", "note": "Call via attribute access .root_at_midpoint(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .items(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .depths(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 239, "pattern": "attribute_call", "note": "Call via attribute access .is_terminal(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 245, "pattern": "attribute_call", "note": "Call via attribute access .nj(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 249, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .nj(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 262, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 266, "pattern": "attribute_call", "note": "Call via attribute access .nj(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 270, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 280, "pattern": "attribute_call", "note": "Call via attribute access .nj(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 283, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .build_tree(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 291, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 296, "pattern": "attribute_call", "note": "Call via attribute access .build_tree(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 310, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 380, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 453, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 461, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 469, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 470, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 478, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 481, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 484, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 488, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 489, "pattern": "attribute_call", "note": "Call via attribute access .read(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 497, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 500, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 503, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 507, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_TreeConstruction", "lineno": 508, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 80, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 82, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 86, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 87, "pattern": "attribute_call", "note": "Call via attribute access .dirname(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 89, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 94, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 96, "pattern": "attribute_call", "note": "Call via attribute access .isfile(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 99, "pattern": "name_call_unresolved", "note": "Call to 'MissingExternalDependencyError(...)' not found in local, imported, or builtin symbols." }, { "module": "Tests.test_Tutorial", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .listdir(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 105, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .endswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 107, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 111, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 118, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 119, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 125, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 134, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .splitext(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 153, "pattern": "attribute_call", "note": "Call via attribute access .basename(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 161, "pattern": "attribute_call", "note": "Call via attribute access .readline(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 166, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 170, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 172, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 176, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .strip(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 178, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 191, "pattern": "attribute_call", "note": "Call via attribute access .lstrip(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 193, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 209, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 227, "pattern": "attribute_call", "note": "Call via attribute access .update(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 233, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 242, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 255, "pattern": "attribute_call", "note": "Call via attribute access .DocTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 257, "pattern": "attribute_call", "note": "Call via attribute access .catch_warnings(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 258, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 259, "pattern": "attribute_call", "note": "Call via attribute access .simplefilter(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .find(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 260, "pattern": "attribute_call", "note": "Call via attribute access .DocTestFinder(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 261, "pattern": "attribute_call", "note": "Call via attribute access .run(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 264, "pattern": "attribute_call", "note": "Call via attribute access .startswith(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 268, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 273, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 276, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 286, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 287, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 289, "pattern": "attribute_call", "note": "Call via attribute access .abspath(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .exists(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 299, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 300, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 302, "pattern": "attribute_call", "note": "Call via attribute access .chdir(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 307, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_Tutorial", "lineno": 308, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_UniGene", "lineno": 1212, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_UniGene", "lineno": 1213, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt", "lineno": 10, "pattern": "attribute_call", "note": "Call via attribute access .check(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt", "lineno": 42, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 33, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 71, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 93, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 115, "pattern": "attribute_call", "note": "Call via attribute access .keys(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 142, "pattern": "attribute_call", "note": "Call via attribute access .mkstemp(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 143, "pattern": "attribute_call", "note": "Call via attribute access .close(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 163, "pattern": "attribute_call", "note": "Call via attribute access .write(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 174, "pattern": "attribute_call", "note": "Call via attribute access .remove(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 181, "pattern": "attribute_call", "note": "Call via attribute access .TextTestRunner(...) - target object type not statically resolved." }, { "module": "Tests.test_UniProt_GOA", "lineno": 182, "pattern": "attribute_call", "note": "Call via attribute access .main(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 39, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 40, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 41, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 47, "pattern": "attribute_call", "note": "Call via attribute access .split(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 49, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 51, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 52, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 53, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 54, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 72, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 73, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 78, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 88, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 95, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 101, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 106, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 123, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 124, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 127, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .join(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 133, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 147, "pattern": "attribute_call", "note": "Call via attribute access .exit(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 165, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." }, { "module": "Tests.PAML.gen_results", "lineno": 168, "pattern": "attribute_call", "note": "Call via attribute access .replace(...) - target object type not statically resolved." } ], "governance_gate": "APPROVED" }